0.014345
0.000000
0.000000
0.000000
0.015858
0.000000
0.000000
0.000000
0.026350
0.00000
0.00000
0.00000
Stura, E.A.
Dive, V.
Devel, L.
Czarny, B.
Beau, F.
Vera, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
69.710
63.060
37.950
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C29 H32 N4 O6 S
564.653
N~2~-{3-[4-(4-phenylthiophen-2-yl)phenyl]propanoyl}-L-glutaminyl-L-alpha-glutamine
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
Y
129
N
C
Y
130
N
N
Y
131
N
C
Y
132
N
C
Y
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
S
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
S
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
O
Y
278
N
S
N
279
N
C
N
280
N
C
N
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
O
N
306
N
N
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
O
N
316
N
N
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
R
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
N
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
N
418
N
O
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
C
N
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
doub
Y
308
N
sing
N
309
N
sing
Y
310
N
doub
Y
311
N
sing
N
312
N
sing
Y
313
N
sing
N
314
N
sing
N
315
N
sing
Y
316
N
doub
Y
317
N
sing
N
318
N
sing
N
319
N
sing
Y
320
N
doub
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
doub
N
330
N
sing
N
331
N
sing
Y
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
287
26647
26656
10.1074/jbc.M112.380782
22689580
Simple pseudo-dipeptides with a P2' glutamate: a novel inhibitor family of matrix metalloproteases and other metzincins.
2012
10.2210/pdb3tsk/pdb
pdb_00003tsk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
bent cylindrical mirror
CCD
2011-02-01
MARMOSAIC 225 mm CCD
horizontally diffracting Si (111) monochromator and Pt coated mirrors in Kirkpatrick-Baez geometry for focusing
SINGLE WAVELENGTH
M
x-ray
1
0.87260
1.0
ID23-2
ESRF
0.87260
SYNCHROTRON
ESRF BEAMLINE ID23-2
17615.670
Macrophage metalloelastase
3.4.24.65
Catalitic subunit (UNP residues 106-263)
F171D
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
564.653
N~2~-{3-[4-(4-phenylthiophen-2-yl)phenyl]propanoyl}-L-glutaminyl-L-alpha-glutamine
1
syn
non-polymer
18.015
water
194
nat
water
MME, Macrophage elastase, ME, hME, Matrix metalloproteinase-12, MMP-12
no
no
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
HME, MMP12
9606
Homo sapiens
562
Escherichia coli
BL21
PET24A
1
2.37
48.05
VAPOR DIFFUSION, SITTING DROP
9.5
MMP-12 at 0.4 mM co-crystallized with 100 mM AHA and compound QEG at 1 mM against reservoir solution: 27% PEG 10000, 100 mM Tris-HCl, pH 9.5. 24h in cryoprotectant to remove AHA. 70 MICRO-M compound QEG in 10% di-ethylene glycol, 10% 1.2-propanediol, 10% glycerol, 10% PEG 10K, 200 mM NaCl, 33.3 mM sodium acetate, 33.3 mM ADA, 33.3 mM bicine, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Other
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-06-20
1
1
2012-10-17
1
2
2012-12-12
1
3
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Human MMP12 in complex with non-zinc chelating inhibitor without acetohydroxamic acid
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
RCSB
Y
RCSB
2011-09-13
REL
REL
ZN
ZINC ION
CA
CALCIUM ION
QEG
N~2~-{3-[4-(4-phenylthiophen-2-yl)phenyl]propanoyl}-L-glutaminyl-L-alpha-glutamine
HOH
water
3TS4
PDB
experimental model
Inhibitor
N~2~-{3-[4-(4-PHENYLTHIOPHEN-2-YL)PHENYL]PROPANOYL}-L-GLUTAMINYL-L-ALPHA-GLUTAMINE
Peptide-like
ZN
264
2
ZN
ZN
301
A
ZN
265
2
ZN
ZN
302
A
CA
266
3
CA
CA
303
A
CA
267
3
CA
CA
304
A
CA
268
3
CA
CA
305
A
QEG
301
4
QEG
QEG
306
A
HOH
1
5
HOH
HOH
401
A
HOH
2
5
HOH
HOH
402
A
HOH
3
5
HOH
HOH
403
A
HOH
4
5
HOH
HOH
404
A
HOH
5
5
HOH
HOH
405
A
HOH
6
5
HOH
HOH
406
A
HOH
7
5
HOH
HOH
407
A
HOH
8
5
HOH
HOH
408
A
HOH
9
5
HOH
HOH
409
A
HOH
10
5
HOH
HOH
410
A
HOH
11
5
HOH
HOH
411
A
HOH
12
5
HOH
HOH
412
A
HOH
13
5
HOH
HOH
413
A
HOH
14
5
HOH
HOH
414
A
HOH
15
5
HOH
HOH
415
A
HOH
16
5
HOH
HOH
416
A
HOH
17
5
HOH
HOH
417
A
HOH
18
5
HOH
HOH
418
A
HOH
19
5
HOH
HOH
419
A
HOH
20
5
HOH
HOH
420
A
HOH
21
5
HOH
HOH
421
A
HOH
22
5
HOH
HOH
422
A
HOH
23
5
HOH
HOH
423
A
HOH
24
5
HOH
HOH
424
A
HOH
25
5
HOH
HOH
425
A
HOH
26
5
HOH
HOH
426
A
HOH
27
5
HOH
HOH
427
A
HOH
28
5
HOH
HOH
428
A
HOH
29
5
HOH
HOH
429
A
HOH
30
5
HOH
HOH
430
A
HOH
31
5
HOH
HOH
431
A
HOH
32
5
HOH
HOH
432
A
HOH
33
5
HOH
HOH
433
A
HOH
34
5
HOH
HOH
434
A
HOH
35
5
HOH
HOH
435
A
HOH
36
5
HOH
HOH
436
A
HOH
37
5
HOH
HOH
437
A
HOH
38
5
HOH
HOH
438
A
HOH
39
5
HOH
HOH
439
A
HOH
40
5
HOH
HOH
440
A
HOH
41
5
HOH
HOH
441
A
HOH
42
5
HOH
HOH
442
A
HOH
43
5
HOH
HOH
443
A
HOH
44
5
HOH
HOH
444
A
HOH
45
5
HOH
HOH
445
A
HOH
46
5
HOH
HOH
446
A
HOH
47
5
HOH
HOH
447
A
HOH
48
5
HOH
HOH
448
A
HOH
49
5
HOH
HOH
449
A
HOH
50
5
HOH
HOH
450
A
HOH
51
5
HOH
HOH
451
A
HOH
52
5
HOH
HOH
452
A
HOH
53
5
HOH
HOH
453
A
HOH
54
5
HOH
HOH
454
A
HOH
55
5
HOH
HOH
455
A
HOH
56
5
HOH
HOH
456
A
HOH
57
5
HOH
HOH
457
A
HOH
58
5
HOH
HOH
458
A
HOH
59
5
HOH
HOH
459
A
HOH
60
5
HOH
HOH
460
A
HOH
61
5
HOH
HOH
461
A
HOH
62
5
HOH
HOH
462
A
HOH
63
5
HOH
HOH
463
A
HOH
64
5
HOH
HOH
464
A
HOH
65
5
HOH
HOH
465
A
HOH
66
5
HOH
HOH
466
A
HOH
67
5
HOH
HOH
467
A
HOH
68
5
HOH
HOH
468
A
HOH
69
5
HOH
HOH
469
A
HOH
70
5
HOH
HOH
470
A
HOH
71
5
HOH
HOH
471
A
HOH
72
5
HOH
HOH
472
A
HOH
73
5
HOH
HOH
473
A
HOH
74
5
HOH
HOH
474
A
HOH
75
5
HOH
HOH
475
A
HOH
76
5
HOH
HOH
476
A
HOH
77
5
HOH
HOH
477
A
HOH
78
5
HOH
HOH
478
A
HOH
79
5
HOH
HOH
479
A
HOH
80
5
HOH
HOH
480
A
HOH
81
5
HOH
HOH
481
A
HOH
82
5
HOH
HOH
482
A
HOH
83
5
HOH
HOH
483
A
HOH
84
5
HOH
HOH
484
A
HOH
85
5
HOH
HOH
485
A
HOH
86
5
HOH
HOH
486
A
HOH
87
5
HOH
HOH
487
A
HOH
88
5
HOH
HOH
488
A
HOH
89
5
HOH
HOH
489
A
HOH
90
5
HOH
HOH
490
A
HOH
91
5
HOH
HOH
491
A
HOH
92
5
HOH
HOH
492
A
HOH
93
5
HOH
HOH
493
A
HOH
94
5
HOH
HOH
494
A
HOH
95
5
HOH
HOH
495
A
HOH
96
5
HOH
HOH
496
A
HOH
97
5
HOH
HOH
497
A
HOH
98
5
HOH
HOH
498
A
HOH
99
5
HOH
HOH
499
A
HOH
100
5
HOH
HOH
500
A
HOH
101
5
HOH
HOH
501
A
HOH
102
5
HOH
HOH
502
A
HOH
103
5
HOH
HOH
503
A
HOH
104
5
HOH
HOH
504
A
HOH
105
5
HOH
HOH
505
A
HOH
106
5
HOH
HOH
506
A
HOH
107
5
HOH
HOH
507
A
HOH
108
5
HOH
HOH
508
A
HOH
109
5
HOH
HOH
509
A
HOH
110
5
HOH
HOH
510
A
HOH
111
5
HOH
HOH
511
A
HOH
112
5
HOH
HOH
512
A
HOH
113
5
HOH
HOH
513
A
HOH
114
5
HOH
HOH
514
A
HOH
115
5
HOH
HOH
515
A
HOH
116
5
HOH
HOH
516
A
HOH
117
5
HOH
HOH
517
A
HOH
118
5
HOH
HOH
518
A
HOH
119
5
HOH
HOH
519
A
HOH
120
5
HOH
HOH
520
A
HOH
121
5
HOH
HOH
521
A
HOH
122
5
HOH
HOH
522
A
HOH
123
5
HOH
HOH
523
A
HOH
124
5
HOH
HOH
524
A
HOH
125
5
HOH
HOH
525
A
HOH
126
5
HOH
HOH
526
A
HOH
127
5
HOH
HOH
527
A
HOH
128
5
HOH
HOH
528
A
HOH
129
5
HOH
HOH
529
A
HOH
130
5
HOH
HOH
530
A
HOH
131
5
HOH
HOH
531
A
HOH
132
5
HOH
HOH
532
A
HOH
133
5
HOH
HOH
533
A
HOH
134
5
HOH
HOH
534
A
HOH
135
5
HOH
HOH
535
A
HOH
136
5
HOH
HOH
536
A
HOH
137
5
HOH
HOH
537
A
HOH
138
5
HOH
HOH
538
A
HOH
139
5
HOH
HOH
539
A
HOH
140
5
HOH
HOH
540
A
HOH
141
5
HOH
HOH
541
A
HOH
142
5
HOH
HOH
542
A
HOH
143
5
HOH
HOH
543
A
HOH
144
5
HOH
HOH
544
A
HOH
146
5
HOH
HOH
545
A
HOH
147
5
HOH
HOH
546
A
HOH
148
5
HOH
HOH
547
A
HOH
149
5
HOH
HOH
548
A
HOH
150
5
HOH
HOH
549
A
HOH
151
5
HOH
HOH
550
A
HOH
152
5
HOH
HOH
551
A
HOH
153
5
HOH
HOH
552
A
HOH
154
5
HOH
HOH
553
A
HOH
155
5
HOH
HOH
554
A
HOH
156
5
HOH
HOH
555
A
HOH
157
5
HOH
HOH
556
A
HOH
158
5
HOH
HOH
557
A
HOH
159
5
HOH
HOH
558
A
HOH
160
5
HOH
HOH
559
A
HOH
161
5
HOH
HOH
560
A
HOH
162
5
HOH
HOH
561
A
HOH
163
5
HOH
HOH
562
A
HOH
164
5
HOH
HOH
563
A
HOH
165
5
HOH
HOH
564
A
HOH
166
5
HOH
HOH
565
A
HOH
167
5
HOH
HOH
566
A
HOH
168
5
HOH
HOH
567
A
HOH
169
5
HOH
HOH
568
A
HOH
170
5
HOH
HOH
569
A
HOH
171
5
HOH
HOH
570
A
HOH
172
5
HOH
HOH
571
A
HOH
173
5
HOH
HOH
572
A
HOH
174
5
HOH
HOH
573
A
HOH
175
5
HOH
HOH
574
A
HOH
176
5
HOH
HOH
575
A
HOH
177
5
HOH
HOH
576
A
HOH
178
5
HOH
HOH
577
A
HOH
179
5
HOH
HOH
578
A
HOH
180
5
HOH
HOH
579
A
HOH
181
5
HOH
HOH
580
A
HOH
182
5
HOH
HOH
581
A
HOH
183
5
HOH
HOH
582
A
HOH
184
5
HOH
HOH
583
A
HOH
185
5
HOH
HOH
584
A
HOH
186
5
HOH
HOH
585
A
HOH
187
5
HOH
HOH
586
A
HOH
188
5
HOH
HOH
587
A
HOH
189
5
HOH
HOH
588
A
HOH
190
5
HOH
HOH
589
A
HOH
191
5
HOH
HOH
590
A
HOH
192
5
HOH
HOH
591
A
HOH
193
5
HOH
HOH
592
A
HOH
194
5
HOH
HOH
593
A
HOH
195
5
HOH
HOH
594
A
MET
105
n
1
MET
105
A
GLY
106
n
2
GLY
106
A
PRO
107
n
3
PRO
107
A
VAL
108
n
4
VAL
108
A
TRP
109
n
5
TRP
109
A
ARG
110
n
6
ARG
110
A
LYS
111
n
7
LYS
111
A
HIS
112
n
8
HIS
112
A
TYR
113
n
9
TYR
113
A
ILE
114
n
10
ILE
114
A
THR
115
n
11
THR
115
A
TYR
116
n
12
TYR
116
A
ARG
117
n
13
ARG
117
A
ILE
118
n
14
ILE
118
A
ASN
119
n
15
ASN
119
A
ASN
120
n
16
ASN
120
A
TYR
121
n
17
TYR
121
A
THR
122
n
18
THR
122
A
PRO
123
n
19
PRO
123
A
ASP
124
n
20
ASP
124
A
MET
125
n
21
MET
125
A
ASN
126
n
22
ASN
126
A
ARG
127
n
23
ARG
127
A
GLU
128
n
24
GLU
128
A
ASP
129
n
25
ASP
129
A
VAL
130
n
26
VAL
130
A
ASP
131
n
27
ASP
131
A
TYR
132
n
28
TYR
132
A
ALA
133
n
29
ALA
133
A
ILE
134
n
30
ILE
134
A
ARG
135
n
31
ARG
135
A
LYS
136
n
32
LYS
136
A
ALA
137
n
33
ALA
137
A
PHE
138
n
34
PHE
138
A
GLN
139
n
35
GLN
139
A
VAL
140
n
36
VAL
140
A
TRP
141
n
37
TRP
141
A
SER
142
n
38
SER
142
A
ASN
143
n
39
ASN
143
A
VAL
144
n
40
VAL
144
A
THR
145
n
41
THR
145
A
PRO
146
n
42
PRO
146
A
LEU
147
n
43
LEU
147
A
LYS
148
n
44
LYS
148
A
PHE
149
n
45
PHE
149
A
SER
150
n
46
SER
150
A
LYS
151
n
47
LYS
151
A
ILE
152
n
48
ILE
152
A
ASN
153
n
49
ASN
153
A
THR
154
n
50
THR
154
A
GLY
155
n
51
GLY
155
A
MET
156
n
52
MET
156
A
ALA
157
n
53
ALA
157
A
ASP
158
n
54
ASP
158
A
ILE
159
n
55
ILE
159
A
LEU
160
n
56
LEU
160
A
VAL
161
n
57
VAL
161
A
VAL
162
n
58
VAL
162
A
PHE
163
n
59
PHE
163
A
ALA
164
n
60
ALA
164
A
ARG
165
n
61
ARG
165
A
GLY
166
n
62
GLY
166
A
ALA
167
n
63
ALA
167
A
HIS
168
n
64
HIS
168
A
GLY
169
n
65
GLY
169
A
ASP
170
n
66
ASP
170
A
ASP
171
n
67
ASP
171
A
HIS
172
n
68
HIS
172
A
ALA
173
n
69
ALA
173
A
PHE
174
n
70
PHE
174
A
ASP
175
n
71
ASP
175
A
GLY
176
n
72
GLY
176
A
LYS
177
n
73
LYS
177
A
GLY
178
n
74
GLY
178
A
GLY
179
n
75
GLY
179
A
ILE
180
n
76
ILE
180
A
LEU
181
n
77
LEU
181
A
ALA
182
n
78
ALA
182
A
HIS
183
n
79
HIS
183
A
ALA
184
n
80
ALA
184
A
PHE
185
n
81
PHE
185
A
GLY
186
n
82
GLY
186
A
PRO
187
n
83
PRO
187
A
GLY
188
n
84
GLY
188
A
SER
189
n
85
SER
189
A
GLY
190
n
86
GLY
190
A
ILE
191
n
87
ILE
191
A
GLY
192
n
88
GLY
192
A
GLY
193
n
89
GLY
193
A
ASP
194
n
90
ASP
194
A
ALA
195
n
91
ALA
195
A
HIS
196
n
92
HIS
196
A
PHE
197
n
93
PHE
197
A
ASP
198
n
94
ASP
198
A
GLU
199
n
95
GLU
199
A
ASP
200
n
96
ASP
200
A
GLU
201
n
97
GLU
201
A
PHE
202
n
98
PHE
202
A
TRP
203
n
99
TRP
203
A
THR
204
n
100
THR
204
A
THR
205
n
101
THR
205
A
HIS
206
n
102
HIS
206
A
SER
207
n
103
SER
207
A
GLY
208
n
104
GLY
208
A
GLY
209
n
105
GLY
209
A
THR
210
n
106
THR
210
A
ASN
211
n
107
ASN
211
A
LEU
212
n
108
LEU
212
A
PHE
213
n
109
PHE
213
A
LEU
214
n
110
LEU
214
A
THR
215
n
111
THR
215
A
ALA
216
n
112
ALA
216
A
VAL
217
n
113
VAL
217
A
HIS
218
n
114
HIS
218
A
GLU
219
n
115
GLU
219
A
ILE
220
n
116
ILE
220
A
GLY
221
n
117
GLY
221
A
HIS
222
n
118
HIS
222
A
SER
223
n
119
SER
223
A
LEU
224
n
120
LEU
224
A
GLY
225
n
121
GLY
225
A
LEU
226
n
122
LEU
226
A
GLY
227
n
123
GLY
227
A
HIS
228
n
124
HIS
228
A
SER
229
n
125
SER
229
A
SER
230
n
126
SER
230
A
ASP
231
n
127
ASP
231
A
PRO
232
n
128
PRO
232
A
LYS
233
n
129
LYS
233
A
ALA
234
n
130
ALA
234
A
VAL
235
n
131
VAL
235
A
MET
236
n
132
MET
236
A
PHE
237
n
133
PHE
237
A
PRO
238
n
134
PRO
238
A
THR
239
n
135
THR
239
A
TYR
240
n
136
TYR
240
A
LYS
241
n
137
LYS
241
A
TYR
242
n
138
TYR
242
A
VAL
243
n
139
VAL
243
A
ASP
244
n
140
ASP
244
A
ILE
245
n
141
ILE
245
A
ASN
246
n
142
ASN
246
A
THR
247
n
143
THR
247
A
PHE
248
n
144
PHE
248
A
ARG
249
n
145
ARG
249
A
LEU
250
n
146
LEU
250
A
SER
251
n
147
SER
251
A
ALA
252
n
148
ALA
252
A
ASP
253
n
149
ASP
253
A
ASP
254
n
150
ASP
254
A
ILE
255
n
151
ILE
255
A
ARG
256
n
152
ARG
256
A
GLY
257
n
153
GLY
257
A
ILE
258
n
154
ILE
258
A
GLN
259
n
155
GLN
259
A
SER
260
n
156
SER
260
A
LEU
261
n
157
LEU
261
A
TYR
262
n
158
TYR
262
A
GLY
263
n
159
GLY
263
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
ASP
124
A
OD1
ASP
20
1_555
46.8
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
145.5
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
154.1
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
87.8
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
85.3
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
74.8
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
85.5
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
127.6
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
77.2
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
117.9
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
89.8
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
77.0
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
117.2
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
157.8
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
83.8
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
434
H
O
HOH
1_555
121.3
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
434
H
O
HOH
1_555
74.6
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
434
H
O
HOH
1_555
87.7
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
434
H
O
HOH
1_555
86.7
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
434
H
O
HOH
1_555
145.5
A
HOH
423
H
O
HOH
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
434
H
O
HOH
1_555
75.8
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
190
A
O
GLY
86
1_555
157.6
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
87.5
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
91.1
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
94.4
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
107.8
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
88.1
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
415
H
O
HOH
1_555
79.6
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
415
H
O
HOH
1_555
96.9
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
415
H
O
HOH
1_555
163.5
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
415
H
O
HOH
1_555
102.9
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
422
H
O
HOH
1_555
80.6
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
422
H
O
HOH
1_555
77.8
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
422
H
O
HOH
1_555
72.0
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
422
H
O
HOH
1_555
159.6
A
HOH
415
H
O
HOH
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
422
H
O
HOH
1_555
95.6
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
492
H
O
HOH
1_555
126.9
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
492
H
O
HOH
1_555
64.7
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
492
H
O
HOH
1_555
140.3
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
492
H
O
HOH
1_555
71.7
A
HOH
415
H
O
HOH
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
492
H
O
HOH
1_555
56.0
A
HOH
422
H
O
HOH
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
492
H
O
HOH
1_555
126.9
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
ASP
170
A
OD1
ASP
66
1_555
114.7
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
112.7
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
109.5
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
111.5
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
92.4
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
114.5
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
176
A
O
GLY
72
1_555
87.3
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
86.9
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
83.5
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
86.4
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
173.3
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
93.9
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
92.5
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
93.5
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
177.0
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
89.0
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
170.4
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
102.3
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
93.0
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
84.0
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
88.1
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
222
A
NE2
HIS
118
1_555
97.8
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
107.1
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
92.2
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HOH
471
H
O
HOH
1_555
115.3
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HOH
471
H
O
HOH
1_555
99.2
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HOH
471
H
O
HOH
1_555
133.8
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HOH
561
H
O
HOH
1_555
121.6
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HOH
561
H
O
HOH
1_555
135.6
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HOH
561
H
O
HOH
1_555
94.6
A
HOH
471
H
O
HOH
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HOH
561
H
O
HOH
1_555
47.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
148
A
O
LYS
44
A
N
ILE
114
A
N
ILE
10
A
N
ARG
117
A
N
ARG
13
A
O
ILE
159
A
O
ILE
55
A
N
VAL
162
A
N
VAL
58
A
O
PHE
197
A
O
PHE
93
A
O
HIS
196
A
O
HIS
92
A
N
HIS
183
A
N
HIS
79
A
N
THR
204
A
N
THR
100
A
O
THR
210
A
O
THR
106
1
A
A
O
O
HOH
HOH
471
561
1.92
1
A
A
O
O
HOH
HOH
455
466
2.04
1
A
A
O
O
HOH
HOH
503
577
2.14
1
A
A
O8
O
QEG
HOH
306
591
2.19
1
9.98
1.50
119.30
129.28
A
A
A
C
N
CA
ASP
PRO
PRO
231
232
232
Y
1
A
A
O
O
HOH
HOH
418
436
2.04
1_555
4_455
1
A
ASP
171
92.55
6.00
1
A
ASP
175
-141.37
16.99
1
A
HIS
206
-132.19
-157.61
27.721
-1.44
0.00
0.00
-0.26
0.00
1.71
0.967
0.935
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23174
0.16216
0.16550
2.00
33.331
458
11288
9114
4.8
80.74
5.183
0.138
RANDOM
1
Isotropic
THROUGHOUT
RIGID BODY REFINEMENT
0.249
0.206
0.80
0.80
1.40
3TS4
MAXIMUM LIKELIHOOD
MASK
2.00
33.331
194
1485
45
0
1246
0.018
0.021
1358
2.220
1.952
1852
6.596
5.000
164
37.632
23.182
66
14.952
15.000
197
10.712
15.000
8
0.177
0.200
186
0.010
0.021
1093
1.017
1.500
800
1.756
2.000
1283
2.700
3.000
558
4.129
4.500
558
0.339
0.232
2.052
35
648
20
80.73
2.0
33.33
3TSK
9572
0
0
0.142
0.074
1
7.2
3.7
83.9
1.066
2.00
2.11
1.6
0.926
1
3.4
80.9
0.045
6.32
33.33
20.7
0.040
1
4.4
79.5
0.062
4.47
6.32
20.2
0.056
1
4.5
82.5
0.080
3.65
4.47
18.3
0.072
1
4.5
84.6
0.106
3.16
3.65
12.9
0.095
1
4.3
85.1
0.175
2.83
3.16
7.9
0.154
1
3.8
85.6
0.300
2.58
2.83
5.3
0.263
1
3.5
86.5
0.422
2.39
2.58
3.6
0.369
1
3.4
85.4
0.603
2.24
2.58
2.7
0.524
1
3.4
83.5
0.787
2.11
2.24
2.1
0.686
1
3.4
83.1
data collection
DNA
refinement
REFMAC
5.5.0109
data reduction
MOSFLM
data scaling
SCALA
phasing
REFMAC
5.5.0109
Human MMP12 in complex with L-glutamate motif inhibitor
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
ASN
126
A
ASN
22
HELX_P
A
ASN
143
A
ASN
39
1
1
18
A
LEU
212
A
LEU
108
HELX_P
A
LEU
224
A
LEU
120
1
2
13
A
SER
251
A
SER
147
HELX_P
A
TYR
262
A
TYR
158
1
3
12
metalc
2.345
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.998
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.555
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.003
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
1.907
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.310
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.311
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.395
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.314
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.106
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.321
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.554
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.355
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.289
A
HIS
196
A
ND1
HIS
92
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.362
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.397
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.505
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.368
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.229
A
GLU
201
A
OE2
GLU
97
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.191
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.143
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
1.988
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.522
A
ZN
301
B
ZN
ZN
1_555
A
HOH
471
H
O
HOH
1_555
metalc
2.127
A
ZN
301
B
ZN
ZN
1_555
A
HOH
561
H
O
HOH
1_555
metalc
2.533
A
CA
303
D
CA
CA
1_555
A
HOH
415
H
O
HOH
1_555
metalc
2.931
A
CA
303
D
CA
CA
1_555
A
HOH
422
H
O
HOH
1_555
metalc
3.088
A
CA
303
D
CA
CA
1_555
A
HOH
492
H
O
HOH
1_555
metalc
2.752
A
CA
304
E
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
metalc
2.573
A
CA
304
E
CA
CA
1_555
A
HOH
434
H
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
pseudo dipeptides, potent inhibitors, metzincin, Zinc metalloprotease, HYDROLASE-HYDROLASE INHIBITOR complex
MMP12_HUMAN
UNP
1
106
P39900
GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAF
GPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
106
263
3TSK
106
263
P39900
A
1
2
159
1
initiating methionine
MET
105
3TSK
A
P39900
UNP
1
1
PHE
engineered mutation
ASP
171
3TSK
A
P39900
UNP
171
67
5
2
parallel
parallel
parallel
anti-parallel
parallel
A
LYS
148
A
LYS
44
A
LYS
151
A
LYS
47
A
TYR
113
A
TYR
9
A
ILE
118
A
ILE
14
A
ILE
159
A
ILE
55
A
ALA
164
A
ALA
60
A
ALA
195
A
ALA
91
A
ASP
198
A
ASP
94
A
ALA
182
A
ALA
78
A
ALA
184
A
ALA
80
A
TRP
203
A
TRP
99
A
THR
204
A
THR
100
A
THR
210
A
THR
106
A
ASN
211
A
ASN
107
BINDING SITE FOR RESIDUE ZN A 301
A
ZN
301
Software
5
BINDING SITE FOR RESIDUE ZN A 302
A
ZN
302
Software
4
BINDING SITE FOR RESIDUE CA A 303
A
CA
303
Software
7
BINDING SITE FOR RESIDUE CA A 304
A
CA
304
Software
5
BINDING SITE FOR RESIDUE CA A 305
A
CA
305
Software
6
BINDING SITE FOR RESIDUE QEG A 306
A
QEG
306
Software
19
A
HIS
218
A
HIS
114
5
1_555
A
HIS
222
A
HIS
118
5
1_555
A
HIS
228
A
HIS
124
5
1_555
A
HOH
471
H
HOH
5
1_555
A
HOH
561
H
HOH
5
1_555
A
HIS
168
A
HIS
64
4
1_555
A
ASP
170
A
ASP
66
4
1_555
A
HIS
183
A
HIS
79
4
1_555
A
HIS
196
A
HIS
92
4
1_555
A
ASP
158
A
ASP
54
7
1_555
A
GLY
190
A
GLY
86
7
1_555
A
GLY
192
A
GLY
88
7
1_555
A
ASP
194
A
ASP
90
7
1_555
A
HOH
415
H
HOH
7
1_555
A
HOH
422
H
HOH
7
1_555
A
HOH
492
H
HOH
7
1_555
A
ASP
124
A
ASP
20
5
1_555
A
GLU
199
A
GLU
95
5
1_555
A
GLU
201
A
GLU
97
5
1_555
A
HOH
423
H
HOH
5
1_555
A
HOH
434
H
HOH
5
1_555
A
ASP
175
A
ASP
71
6
1_555
A
GLY
176
A
GLY
72
6
1_555
A
GLY
178
A
GLY
74
6
1_555
A
ILE
180
A
ILE
76
6
1_555
A
ASP
198
A
ASP
94
6
1_555
A
GLU
201
A
GLU
97
6
1_555
A
GLY
179
A
GLY
75
19
1_555
A
ILE
180
A
ILE
76
19
1_555
A
LEU
181
A
LEU
77
19
1_555
A
THR
215
A
THR
111
19
1_555
A
HIS
218
A
HIS
114
19
1_555
A
GLU
219
A
GLU
115
19
1_555
A
PRO
232
A
PRO
128
19
2_565
A
PRO
232
A
PRO
128
19
1_555
A
LYS
233
A
LYS
129
19
1_555
A
VAL
235
A
VAL
131
19
1_555
A
PHE
237
A
PHE
133
19
1_555
A
PRO
238
A
PRO
134
19
1_555
A
THR
239
A
THR
135
19
1_555
A
TYR
240
A
TYR
136
19
1_555
A
LYS
241
A
LYS
137
19
1_555
A
HOH
429
H
HOH
19
1_555
A
HOH
532
H
HOH
19
1_555
A
HOH
591
H
HOH
19
1_555
A
HOH
592
H
HOH
19
1_555
18
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