0.016425
0.009483
0.000000
0.000000
0.018966
0.000000
0.000000
0.000000
0.015658
0.00000
0.00000
0.00000
Nemeth, V.
Barabas, O.
Vertessy, G.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
60.884
60.884
63.867
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O8 P
308.182
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
DUMP
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
N
C
N
374
N
N
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
O
N
379
N
O
N
380
R
C
N
381
N
C
N
382
S
C
N
383
R
C
N
384
N
O
N
385
N
O
N
386
N
C
N
387
N
O
N
388
N
P
N
389
N
O
N
390
N
O
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
N
410
N
C
N
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
To be Published
0353
Structural Snapshots of Enzyme-Catalysed Phosphate Ester Hydrolysis Directly Visualize in-Line Attack and Inversion
DK
Acta Crystallogr.,Sect.F
1744-3091
62
399
401
16582495
Crystallization and Preliminary X-Ray Studies of Dutpase from Mason-Pfizer Monkey Retrovirus.
2006
10.2210/pdb3tta/pdb
pdb_00003tta
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
IMAGE PLATE
2005-02-01
MAR scanner 345 mm plate
SI [111], HORIZONTALLY FOCUSING
SINGLE WAVELENGTH
M
x-ray
1
0.8128
1.0
0.8430
1.0
BW7B
EMBL/DESY, HAMBURG
0.8128
0.8430
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE BW7B
16155.373
DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE
3.6.1.23
DUTPASE (CATALYTIC) DOMAIN, UNP RESIDUES 608-759
N1K
1
man
polymer
308.182
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
1
syn
non-polymer
18.015
water
96
nat
water
no
no
KRVEGPAPGPETSLWGSQLCSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRS
SITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIY
KRVEGPAPGPETSLWGSQLCSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRS
SITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MPMV
sample
GAG-PRO
11855
MASON-PFIZER MONKEY VIRUS
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PET22B
1
2.12
41.85
VAPOR DIFFUSION, HANGING DROP
8.5
PEG 8000, AMMONIUM CHLORIDE, TRIS, PH 8.5 , VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-10-12
1
1
2017-11-08
1
2
2023-09-13
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-09-14
REL
REL
UMP
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
HOH
water
2D4L
PDB ENTRY 2D4L
PDB
experimental model
UMP
777
2
UMP
UMP
777
A
HOH
1
3
HOH
HOH
153
A
HOH
2
3
HOH
HOH
154
A
HOH
3
3
HOH
HOH
155
A
HOH
4
3
HOH
HOH
156
A
HOH
5
3
HOH
HOH
157
A
HOH
6
3
HOH
HOH
158
A
HOH
7
3
HOH
HOH
159
A
HOH
8
3
HOH
HOH
160
A
HOH
9
3
HOH
HOH
161
A
HOH
10
3
HOH
HOH
162
A
HOH
11
3
HOH
HOH
163
A
HOH
12
3
HOH
HOH
164
A
HOH
13
3
HOH
HOH
165
A
HOH
14
3
HOH
HOH
166
A
HOH
15
3
HOH
HOH
167
A
HOH
16
3
HOH
HOH
168
A
HOH
17
3
HOH
HOH
169
A
HOH
18
3
HOH
HOH
170
A
HOH
19
3
HOH
HOH
171
A
HOH
20
3
HOH
HOH
172
A
HOH
21
3
HOH
HOH
173
A
HOH
22
3
HOH
HOH
174
A
HOH
23
3
HOH
HOH
175
A
HOH
24
3
HOH
HOH
176
A
HOH
25
3
HOH
HOH
177
A
HOH
26
3
HOH
HOH
178
A
HOH
27
3
HOH
HOH
179
A
HOH
28
3
HOH
HOH
180
A
HOH
29
3
HOH
HOH
181
A
HOH
30
3
HOH
HOH
182
A
HOH
31
3
HOH
HOH
183
A
HOH
32
3
HOH
HOH
184
A
HOH
33
3
HOH
HOH
185
A
HOH
34
3
HOH
HOH
186
A
HOH
35
3
HOH
HOH
187
A
HOH
36
3
HOH
HOH
188
A
HOH
37
3
HOH
HOH
189
A
HOH
38
3
HOH
HOH
190
A
HOH
39
3
HOH
HOH
191
A
HOH
40
3
HOH
HOH
192
A
HOH
41
3
HOH
HOH
193
A
HOH
42
3
HOH
HOH
194
A
HOH
43
3
HOH
HOH
195
A
HOH
44
3
HOH
HOH
196
A
HOH
45
3
HOH
HOH
197
A
HOH
46
3
HOH
HOH
198
A
HOH
47
3
HOH
HOH
199
A
HOH
48
3
HOH
HOH
200
A
HOH
49
3
HOH
HOH
201
A
HOH
50
3
HOH
HOH
202
A
HOH
51
3
HOH
HOH
203
A
HOH
52
3
HOH
HOH
204
A
HOH
53
3
HOH
HOH
205
A
HOH
54
3
HOH
HOH
206
A
HOH
55
3
HOH
HOH
207
A
HOH
56
3
HOH
HOH
208
A
HOH
57
3
HOH
HOH
209
A
HOH
58
3
HOH
HOH
210
A
HOH
59
3
HOH
HOH
211
A
HOH
60
3
HOH
HOH
212
A
HOH
61
3
HOH
HOH
213
A
HOH
63
3
HOH
HOH
214
A
HOH
64
3
HOH
HOH
215
A
HOH
65
3
HOH
HOH
216
A
HOH
66
3
HOH
HOH
217
A
HOH
67
3
HOH
HOH
218
A
HOH
68
3
HOH
HOH
219
A
HOH
69
3
HOH
HOH
220
A
HOH
70
3
HOH
HOH
221
A
HOH
71
3
HOH
HOH
222
A
HOH
72
3
HOH
HOH
223
A
HOH
73
3
HOH
HOH
224
A
HOH
74
3
HOH
HOH
225
A
HOH
75
3
HOH
HOH
226
A
HOH
76
3
HOH
HOH
227
A
HOH
77
3
HOH
HOH
228
A
HOH
78
3
HOH
HOH
229
A
HOH
80
3
HOH
HOH
230
A
HOH
81
3
HOH
HOH
231
A
HOH
82
3
HOH
HOH
232
A
HOH
83
3
HOH
HOH
233
A
HOH
84
3
HOH
HOH
234
A
HOH
85
3
HOH
HOH
235
A
HOH
86
3
HOH
HOH
236
A
HOH
87
3
HOH
HOH
237
A
HOH
88
3
HOH
HOH
238
A
HOH
89
3
HOH
HOH
239
A
HOH
90
3
HOH
HOH
240
A
HOH
91
3
HOH
HOH
241
A
HOH
92
3
HOH
HOH
242
A
HOH
93
3
HOH
HOH
243
A
HOH
94
3
HOH
HOH
244
A
HOH
98
3
HOH
HOH
245
A
HOH
99
3
HOH
HOH
246
A
HOH
100
3
HOH
HOH
247
A
HOH
101
3
HOH
HOH
248
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
GLN
24
n
24
GLN
24
A
LYS
25
n
25
LYS
25
A
GLN
26
n
26
GLN
26
A
PRO
27
n
27
PRO
27
A
ILE
28
n
28
ILE
28
A
SER
29
n
29
SER
29
A
LYS
30
n
30
LYS
30
A
LEU
31
n
31
LEU
31
A
THR
32
n
32
THR
32
A
ARG
33
n
33
ARG
33
A
ALA
34
n
34
ALA
34
A
THR
35
n
35
THR
35
A
PRO
36
n
36
PRO
36
A
GLY
37
n
37
GLY
37
A
SER
38
n
38
SER
38
A
ALA
39
n
39
ALA
39
A
GLY
40
n
40
GLY
40
A
LEU
41
n
41
LEU
41
A
ASP
42
n
42
ASP
42
A
LEU
43
n
43
LEU
43
A
CYS
44
n
44
CYS
44
A
SER
45
n
45
SER
45
A
THR
46
n
46
THR
46
A
SER
47
n
47
SER
47
A
HIS
48
n
48
HIS
48
A
THR
49
n
49
THR
49
A
VAL
50
n
50
VAL
50
A
LEU
51
n
51
LEU
51
A
THR
52
n
52
THR
52
A
PRO
53
n
53
PRO
53
A
GLU
54
n
54
GLU
54
A
MET
55
n
55
MET
55
A
GLY
56
n
56
GLY
56
A
PRO
57
n
57
PRO
57
A
GLN
58
n
58
GLN
58
A
ALA
59
n
59
ALA
59
A
LEU
60
n
60
LEU
60
A
SER
61
n
61
SER
61
A
THR
62
n
62
THR
62
A
GLY
63
n
63
GLY
63
A
ILE
64
n
64
ILE
64
A
TYR
65
n
65
TYR
65
A
GLY
66
n
66
GLY
66
A
PRO
67
n
67
PRO
67
A
LEU
68
n
68
LEU
68
A
PRO
69
n
69
PRO
69
A
PRO
70
n
70
PRO
70
A
ASN
71
n
71
ASN
71
A
THR
72
n
72
THR
72
A
PHE
73
n
73
PHE
73
A
GLY
74
n
74
GLY
74
A
LEU
75
n
75
LEU
75
A
ILE
76
n
76
ILE
76
A
LEU
77
n
77
LEU
77
A
GLY
78
n
78
GLY
78
A
ARG
79
n
79
ARG
79
A
SER
80
n
80
SER
80
A
SER
81
n
81
SER
81
A
ILE
82
n
82
ILE
82
A
THR
83
n
83
THR
83
A
MET
84
n
84
MET
84
A
LYS
85
n
85
LYS
85
A
GLY
86
n
86
GLY
86
A
LEU
87
n
87
LEU
87
A
GLN
88
n
88
GLN
88
A
VAL
89
n
89
VAL
89
A
TYR
90
n
90
TYR
90
A
PRO
91
n
91
PRO
91
A
GLY
92
n
92
GLY
92
A
VAL
93
n
93
VAL
93
A
ILE
94
n
94
ILE
94
A
ASP
95
n
95
ASP
95
A
ASN
96
n
96
ASN
96
A
ASP
97
n
97
ASP
97
A
TYR
98
n
98
TYR
98
A
THR
99
n
99
THR
99
A
GLY
100
n
100
GLY
100
A
GLU
101
n
101
GLU
101
A
ILE
102
n
102
ILE
102
A
LYS
103
n
103
LYS
103
A
ILE
104
n
104
ILE
104
A
MET
105
n
105
MET
105
A
ALA
106
n
106
ALA
106
A
LYS
107
n
107
LYS
107
A
ALA
108
n
108
ALA
108
A
VAL
109
n
109
VAL
109
A
ASN
110
n
110
ASN
110
A
ASN
111
n
111
ASN
111
A
ILE
112
n
112
ILE
112
A
VAL
113
n
113
VAL
113
A
THR
114
n
114
THR
114
A
VAL
115
n
115
VAL
115
A
SER
116
n
116
SER
116
A
GLN
117
n
117
GLN
117
A
GLY
118
n
118
GLY
118
A
ASN
119
n
119
ASN
119
A
ARG
120
n
120
ARG
120
A
ILE
121
n
121
ILE
121
A
ALA
122
n
122
ALA
122
A
GLN
123
n
123
GLN
123
A
LEU
124
n
124
LEU
124
A
ILE
125
n
125
ILE
125
A
LEU
126
n
126
LEU
126
A
LEU
127
n
127
LEU
127
A
PRO
128
n
128
PRO
128
A
LEU
129
n
129
LEU
129
A
ILE
130
n
130
ILE
130
A
GLU
131
n
131
GLU
131
A
THR
132
n
132
THR
132
A
ASP
133
n
133
ASP
133
A
ASN
134
n
134
ASN
134
A
LYS
135
n
135
LYS
135
A
VAL
136
n
136
VAL
136
A
n
137
137
A
n
138
138
A
n
139
139
A
n
140
140
A
n
141
141
A
n
142
142
A
n
143
143
A
n
144
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
n
152
152
A
0.9117
0.1538
-0.5532
1.6516
-0.0391
2.7534
-0.0303
-0.1362
-0.1941
0.0321
0.0085
-0.0776
0.1847
0.2265
0.0218
-0.0549
0.0140
-0.0154
-0.0779
0.0290
-0.0217
refined
2.7310
58.8764
30.3144
X-RAY DIFFRACTION
A
24
A
136
X-RAY DIFFRACTION
1
A
153
A
246
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
3
trimeric
8250
-59
13070
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_775
-y+2,x-y+2,z
crystal symmetry operation
60.8840000000
105.4541813680
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_575
-x+y,-x+2,z
crystal symmetry operation
-60.8840000000
105.4541813680
0.0000000000
A
N
GLN
26
A
N
GLN
26
A
O
TYR
65
A
O
TYR
65
A
N
LEU
41
A
N
LEU
41
A
O
LEU
124
A
O
LEU
124
A
O
ILE
125
A
O
ILE
125
A
N
LEU
75
A
N
LEU
75
A
N
GLY
74
A
N
GLY
74
A
O
ILE
94
A
O
ILE
94
A
N
LEU
51
A
N
LEU
51
A
O
VAL
113
A
O
VAL
113
A
N
LEU
60
A
N
LEU
60
A
O
ILE
104
A
O
ILE
104
A
O
LYS
107
A
O
LYS
107
A
N
GLN
88
A
N
GLN
88
1
A
HOH
160
C
HOH
1
A
CG
GLN
24
A
CG
GLN
24
1
Y
1
A
CD
GLN
24
A
CD
GLN
24
1
Y
1
A
OE1
GLN
24
A
OE1
GLN
24
1
Y
1
A
NE2
GLN
24
A
NE2
GLN
24
1
Y
1
A
NZ
LYS
30
A
NZ
LYS
30
1
Y
1
A
OE1
GLN
117
A
OE1
GLN
117
1
Y
1
A
NE2
GLN
117
A
NE2
GLN
117
1
Y
1
A
CG
ASN
119
A
CG
ASN
119
1
Y
1
A
OD1
ASN
119
A
OD1
ASN
119
1
Y
1
A
ND2
ASN
119
A
ND2
ASN
119
1
Y
1
A
CD
ARG
120
A
CD
ARG
120
1
Y
1
A
NE
ARG
120
A
NE
ARG
120
1
Y
1
A
CZ
ARG
120
A
CZ
ARG
120
1
Y
1
A
NH1
ARG
120
A
NH1
ARG
120
1
Y
1
A
NH2
ARG
120
A
NH2
ARG
120
1
Y
1
A
CD1
ILE
121
A
CD1
ILE
121
1
Y
1
A
CG
GLU
131
A
CG
GLU
131
1
Y
1
A
CD
GLU
131
A
CD
GLU
131
1
Y
1
A
OE1
GLU
131
A
OE1
GLU
131
1
Y
1
A
OE2
GLU
131
A
OE2
GLU
131
1
Y
1
A
CG
LYS
135
A
CG
LYS
135
1
Y
1
A
CD
LYS
135
A
CD
LYS
135
1
Y
1
A
CE
LYS
135
A
CE
LYS
135
1
Y
1
A
NZ
LYS
135
A
NZ
LYS
135
1
Y
1
A
LYS
1
A
LYS
1
1
Y
1
A
ARG
2
A
ARG
2
1
Y
1
A
VAL
3
A
VAL
3
1
Y
1
A
GLU
4
A
GLU
4
1
Y
1
A
GLY
5
A
GLY
5
1
Y
1
A
PRO
6
A
PRO
6
1
Y
1
A
ALA
7
A
ALA
7
1
Y
1
A
PRO
8
A
PRO
8
1
Y
1
A
GLY
9
A
GLY
9
1
Y
1
A
PRO
10
A
PRO
10
1
Y
1
A
GLU
11
A
GLU
11
1
Y
1
A
THR
12
A
THR
12
1
Y
1
A
SER
13
A
SER
13
1
Y
1
A
LEU
14
A
LEU
14
1
Y
1
A
TRP
15
A
TRP
15
1
Y
1
A
GLY
16
A
GLY
16
1
Y
1
A
SER
17
A
SER
17
1
Y
1
A
GLN
18
A
GLN
18
1
Y
1
A
LEU
19
A
LEU
19
1
Y
1
A
CYS
20
A
CYS
20
1
Y
1
A
SER
21
A
SER
21
1
Y
1
A
SER
22
A
SER
22
1
Y
1
A
GLN
23
A
GLN
23
1
Y
1
A
GLN
137
A
GLN
137
1
Y
1
A
GLN
138
A
GLN
138
1
Y
1
A
PRO
139
A
PRO
139
1
Y
1
A
TYR
140
A
TYR
140
1
Y
1
A
ARG
141
A
ARG
141
1
Y
1
A
GLY
142
A
GLY
142
1
Y
1
A
GLN
143
A
GLN
143
1
Y
1
A
GLY
144
A
GLY
144
1
Y
1
A
SER
145
A
SER
145
1
Y
1
A
PHE
146
A
PHE
146
1
Y
1
A
GLY
147
A
GLY
147
1
Y
1
A
SER
148
A
SER
148
1
Y
1
A
SER
149
A
SER
149
1
Y
1
A
ASP
150
A
ASP
150
1
Y
1
A
ILE
151
A
ILE
151
1
Y
1
A
TYR
152
A
TYR
152
1
Y
1
A
A
O
O
HOH
HOH
224
245
2.19
1
A
A
GLN
LYS
24
25
-34.25
1
-3.03
0.50
120.30
117.27
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
79
79
79
N
34.695
1.81
0.91
0.00
1.81
0.00
-2.72
0.972
0.956
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.20407
0.16241
0.16473
2.00
20
482
8493
8493
5.4
97.86
9.470
0.121
RANDOM
1
TLS and isotropic individual
THROUGHOUT
RIGID BODY REFINEMENT
0.139
0.80
0.80
1.20
PDB ENTRY 2D4L
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.00
20
96
930
20
0
814
0.019
0.022
860
1.885
2.037
1180
7.188
5.000
116
45.512
25.909
22
16.126
15.000
142
31.503
15.000
2
0.121
0.200
150
0.007
0.020
608
0.228
0.200
364
0.320
0.200
592
0.196
0.200
83
0.225
0.200
64
0.159
0.200
14
1.527
2.000
576
2.656
3.000
927
7.393
10.000
308
10.286
35.000
251
0.339
0.241
2.052
35
646
20
98.70
2.0
20
3TTA
8979
8979
-3.0
0.060
1
11.7
2.4
97.8
2.00
2.10
2.6
1239
0.493
1
2.4
98.7
data collection
MAR345
refinement
REFMAC
5.2.0005
data reduction
XDS
data scaling
XSCALE
phasing
REFMAC
5.2.0005
Crystal structure of M-PMV DUTPASE relaxed end-product (dUMP) complex
1
N
N
2
N
N
3
N
N
A
SER
29
A
SER
29
HELX_P
A
LEU
31
A
LEU
31
5
1
3
A
THR
52
A
THR
52
HELX_P
A
GLY
56
A
GLY
56
5
2
5
A
ARG
79
A
ARG
79
HELX_P
A
LYS
85
A
LYS
85
1
3
7
HYDROLASE
JELLY ROLL, HYDROLASE
A
GLY
66
A
GLY
66
1
A
PRO
67
A
PRO
67
8.17
O92810_MPMV
UNP
1
608
O92810
NRVEGPAPGPETSLWGSQLCSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRS
SITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIY
608
759
3TTA
1
152
O92810
A
1
1
152
1
ASN
engineered mutation
LYS
1
3TTA
A
O92810
UNP
608
1
2
4
2
3
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
26
A
GLN
26
A
PRO
27
A
PRO
27
A
ILE
64
A
ILE
64
A
TYR
65
A
TYR
65
A
LEU
41
A
LEU
41
A
CYS
44
A
CYS
44
A
ARG
120
A
ARG
120
A
PRO
128
A
PRO
128
A
THR
72
A
THR
72
A
GLY
78
A
GLY
78
A
GLY
92
A
GLY
92
A
ILE
94
A
ILE
94
A
THR
49
A
THR
49
A
LEU
51
A
LEU
51
A
VAL
113
A
VAL
113
A
VAL
115
A
VAL
115
A
GLN
58
A
GLN
58
A
LEU
60
A
LEU
60
A
ILE
104
A
ILE
104
A
ALA
108
A
ALA
108
A
LEU
87
A
LEU
87
A
VAL
89
A
VAL
89
BINDING SITE FOR RESIDUE UMP A 777
A
UMP
777
Software
15
A
ARG
79
A
ARG
79
15
3_575
A
SER
80
A
SER
80
15
3_575
A
SER
81
A
SER
81
15
3_575
A
GLY
92
A
GLY
92
15
1_555
A
VAL
93
A
VAL
93
15
1_555
A
ILE
94
A
ILE
94
15
1_555
A
ASP
95
A
ASP
95
15
1_555
A
TYR
98
A
TYR
98
15
1_555
A
GLU
101
A
GLU
101
15
1_555
A
ILE
102
A
ILE
102
15
1_555
A
LYS
103
A
LYS
103
15
1_555
A
MET
105
A
MET
105
15
1_555
A
HOH
153
C
HOH
15
1_555
A
HOH
194
C
HOH
15
1_555
A
HOH
224
C
HOH
15
1_555
173
P 63