0.008649
0.000000
0.000000
0.000000
0.008649
0.000000
0.000000
0.000000
0.013258
0.00000
0.00000
0.00000
Michalska, K.
Xu, X.
Cui, H.
Chin, S.
Savchenko, A.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
115.616
115.616
75.428
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
TO BE PUBLISHED
0353
Crystal structure of putative aminomethyltransferase from Leptospirillum rubarum
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
CCD
2010-12-19
ADSC QUANTUM 315r
DOUBLE CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
19-ID
APS
0.9792
SYNCHROTRON
APS BEAMLINE 19-ID
40104.457
Putative aminomethyltransferase
1
man
polymer
35.453
CHLORIDE ION
4
syn
non-polymer
18.015
water
175
nat
water
no
yes
(MSE)GSSHHHHHHSSGRENLYFQG(MSE)LTEVSDTRIAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDE
KSLSYSFFLNPKARILFDAWCGNFEDKIALFPPAGTREEFVNHLKKYLFFRTKAKITD(MSE)SDHFREIRLVGPETISV
LLSLFDNNFSGSSFR(MSE)LKNGGYVLIHPTSFQHNLDVGLQADLFIPIDQFETTQKSLEDFTSNKGGVLLDESSYLAY
LTEKGIPLFPSELNDSFFPAEAGLDSVGVSYNKGCYVGQEPVTRLKFQGHLNRSLAGFRLEGGPFPK(MSE)EFPVTLFN
PKDGNEAGILTRTSSSDILGSGIGLGYIKRNFSENGTELLLPDAQLVRVHSLPFV
MGSSHHHHHHSSGRENLYFQGMLTEVSDTRIAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFF
LNPKARILFDAWCGNFEDKIALFPPAGTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFSGS
SFRMLKNGGYVLIHPTSFQHNLDVGLQADLFIPIDQFETTQKSLEDFTSNKGGVLLDESSYLAYLTEKGIPLFPSELNDS
FFPAEAGLDSVGVSYNKGCYVGQEPVTRLKFQGHLNRSLAGFRLEGGPFPKMEFPVTLFNPKDGNEAGILTRTSSSDILG
SGIGLGYIKRNFSENGTELLLPDAQLVRVHSLPFV
A
APC106601
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
EAY58150, UBAL2_82410567
419542
Leptospirillum rubarum
469008
Escherichia coli
BL21-Condon Plus (DE3)-RIPL
plasmid
p15Tv lic
1
3.14
60.86
6.9
0.5 M K3PO4/0.5 M Na3PO4, pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 296K
296
Midwest Center for Structural Genomics
MCSG
PSI:Biology
repository
Initial release
1
0
2011-10-12
Y
RCSB
Y
RCSB
2011-09-14
REL
REL
CL
CHLORIDE ION
HOH
water
CL
1
2
CL
CL
335
A
CL
1
2
CL
CL
336
A
CL
1
2
CL
CL
337
A
CL
1
2
CL
CL
338
A
HOH
1
3
HOH
HOH
339
A
HOH
2
3
HOH
HOH
340
A
HOH
3
3
HOH
HOH
341
A
HOH
4
3
HOH
HOH
342
A
HOH
5
3
HOH
HOH
343
A
HOH
6
3
HOH
HOH
344
A
HOH
7
3
HOH
HOH
345
A
HOH
8
3
HOH
HOH
346
A
HOH
9
3
HOH
HOH
347
A
HOH
10
3
HOH
HOH
348
A
HOH
11
3
HOH
HOH
349
A
HOH
12
3
HOH
HOH
350
A
HOH
13
3
HOH
HOH
351
A
HOH
14
3
HOH
HOH
352
A
HOH
15
3
HOH
HOH
353
A
HOH
16
3
HOH
HOH
354
A
HOH
17
3
HOH
HOH
355
A
HOH
18
3
HOH
HOH
356
A
HOH
19
3
HOH
HOH
357
A
HOH
20
3
HOH
HOH
358
A
HOH
21
3
HOH
HOH
359
A
HOH
22
3
HOH
HOH
360
A
HOH
23
3
HOH
HOH
361
A
HOH
24
3
HOH
HOH
362
A
HOH
25
3
HOH
HOH
363
A
HOH
26
3
HOH
HOH
364
A
HOH
27
3
HOH
HOH
365
A
HOH
28
3
HOH
HOH
366
A
HOH
29
3
HOH
HOH
367
A
HOH
30
3
HOH
HOH
368
A
HOH
31
3
HOH
HOH
369
A
HOH
32
3
HOH
HOH
370
A
HOH
33
3
HOH
HOH
371
A
HOH
34
3
HOH
HOH
372
A
HOH
35
3
HOH
HOH
373
A
HOH
36
3
HOH
HOH
374
A
HOH
37
3
HOH
HOH
375
A
HOH
38
3
HOH
HOH
376
A
HOH
39
3
HOH
HOH
377
A
HOH
40
3
HOH
HOH
378
A
HOH
41
3
HOH
HOH
379
A
HOH
42
3
HOH
HOH
380
A
HOH
43
3
HOH
HOH
381
A
HOH
44
3
HOH
HOH
382
A
HOH
45
3
HOH
HOH
383
A
HOH
46
3
HOH
HOH
384
A
HOH
47
3
HOH
HOH
385
A
HOH
48
3
HOH
HOH
386
A
HOH
49
3
HOH
HOH
387
A
HOH
50
3
HOH
HOH
388
A
HOH
51
3
HOH
HOH
389
A
HOH
52
3
HOH
HOH
390
A
HOH
53
3
HOH
HOH
391
A
HOH
54
3
HOH
HOH
392
A
HOH
55
3
HOH
HOH
393
A
HOH
56
3
HOH
HOH
394
A
HOH
57
3
HOH
HOH
395
A
HOH
58
3
HOH
HOH
396
A
HOH
59
3
HOH
HOH
397
A
HOH
60
3
HOH
HOH
398
A
HOH
61
3
HOH
HOH
399
A
HOH
62
3
HOH
HOH
400
A
HOH
63
3
HOH
HOH
401
A
HOH
64
3
HOH
HOH
402
A
HOH
65
3
HOH
HOH
403
A
HOH
66
3
HOH
HOH
404
A
HOH
67
3
HOH
HOH
405
A
HOH
68
3
HOH
HOH
406
A
HOH
69
3
HOH
HOH
407
A
HOH
70
3
HOH
HOH
408
A
HOH
71
3
HOH
HOH
409
A
HOH
72
3
HOH
HOH
410
A
HOH
73
3
HOH
HOH
411
A
HOH
74
3
HOH
HOH
412
A
HOH
75
3
HOH
HOH
413
A
HOH
76
3
HOH
HOH
414
A
HOH
77
3
HOH
HOH
415
A
HOH
78
3
HOH
HOH
416
A
HOH
79
3
HOH
HOH
417
A
HOH
80
3
HOH
HOH
418
A
HOH
81
3
HOH
HOH
419
A
HOH
82
3
HOH
HOH
420
A
HOH
83
3
HOH
HOH
421
A
HOH
84
3
HOH
HOH
422
A
HOH
85
3
HOH
HOH
423
A
HOH
86
3
HOH
HOH
424
A
HOH
87
3
HOH
HOH
425
A
HOH
88
3
HOH
HOH
426
A
HOH
89
3
HOH
HOH
427
A
HOH
90
3
HOH
HOH
428
A
HOH
91
3
HOH
HOH
429
A
HOH
92
3
HOH
HOH
430
A
HOH
93
3
HOH
HOH
431
A
HOH
94
3
HOH
HOH
432
A
HOH
95
3
HOH
HOH
433
A
HOH
96
3
HOH
HOH
434
A
HOH
97
3
HOH
HOH
435
A
HOH
98
3
HOH
HOH
436
A
HOH
99
3
HOH
HOH
437
A
HOH
100
3
HOH
HOH
438
A
HOH
101
3
HOH
HOH
439
A
HOH
102
3
HOH
HOH
440
A
HOH
103
3
HOH
HOH
441
A
HOH
104
3
HOH
HOH
442
A
HOH
105
3
HOH
HOH
443
A
HOH
106
3
HOH
HOH
444
A
HOH
107
3
HOH
HOH
445
A
HOH
108
3
HOH
HOH
446
A
HOH
109
3
HOH
HOH
447
A
HOH
110
3
HOH
HOH
448
A
HOH
111
3
HOH
HOH
449
A
HOH
112
3
HOH
HOH
450
A
HOH
113
3
HOH
HOH
451
A
HOH
114
3
HOH
HOH
452
A
HOH
115
3
HOH
HOH
453
A
HOH
116
3
HOH
HOH
454
A
HOH
117
3
HOH
HOH
455
A
HOH
118
3
HOH
HOH
456
A
HOH
119
3
HOH
HOH
457
A
HOH
120
3
HOH
HOH
458
A
HOH
121
3
HOH
HOH
459
A
HOH
122
3
HOH
HOH
460
A
HOH
123
3
HOH
HOH
461
A
HOH
124
3
HOH
HOH
462
A
HOH
125
3
HOH
HOH
463
A
HOH
126
3
HOH
HOH
464
A
HOH
127
3
HOH
HOH
465
A
HOH
128
3
HOH
HOH
466
A
HOH
129
3
HOH
HOH
467
A
HOH
130
3
HOH
HOH
468
A
HOH
131
3
HOH
HOH
469
A
HOH
132
3
HOH
HOH
470
A
HOH
133
3
HOH
HOH
471
A
HOH
134
3
HOH
HOH
472
A
HOH
135
3
HOH
HOH
473
A
HOH
136
3
HOH
HOH
474
A
HOH
137
3
HOH
HOH
475
A
HOH
138
3
HOH
HOH
476
A
HOH
139
3
HOH
HOH
477
A
HOH
140
3
HOH
HOH
478
A
HOH
141
3
HOH
HOH
479
A
HOH
142
3
HOH
HOH
480
A
HOH
143
3
HOH
HOH
481
A
HOH
144
3
HOH
HOH
482
A
HOH
145
3
HOH
HOH
483
A
HOH
146
3
HOH
HOH
484
A
HOH
147
3
HOH
HOH
485
A
HOH
148
3
HOH
HOH
486
A
HOH
149
3
HOH
HOH
487
A
HOH
150
3
HOH
HOH
488
A
HOH
151
3
HOH
HOH
489
A
HOH
152
3
HOH
HOH
490
A
HOH
153
3
HOH
HOH
491
A
HOH
154
3
HOH
HOH
492
A
HOH
155
3
HOH
HOH
493
A
HOH
156
3
HOH
HOH
494
A
HOH
157
3
HOH
HOH
495
A
HOH
158
3
HOH
HOH
496
A
HOH
159
3
HOH
HOH
497
A
HOH
160
3
HOH
HOH
498
A
HOH
161
3
HOH
HOH
499
A
HOH
162
3
HOH
HOH
500
A
HOH
163
3
HOH
HOH
501
A
HOH
164
3
HOH
HOH
502
A
HOH
165
3
HOH
HOH
503
A
HOH
166
3
HOH
HOH
504
A
HOH
167
3
HOH
HOH
505
A
HOH
168
3
HOH
HOH
506
A
HOH
169
3
HOH
HOH
507
A
HOH
170
3
HOH
HOH
508
A
HOH
171
3
HOH
HOH
509
A
HOH
172
3
HOH
HOH
510
A
HOH
173
3
HOH
HOH
511
A
HOH
174
3
HOH
HOH
512
A
HOH
175
3
HOH
HOH
513
A
n
1
-20
A
n
2
-19
A
n
3
-18
A
n
4
-17
A
n
5
-16
A
n
6
-15
A
n
7
-14
A
n
8
-13
A
n
9
-12
A
n
10
-11
A
n
11
-10
A
n
12
-9
A
n
13
-8
A
n
14
-7
A
n
15
-6
A
ASN
-5
n
16
ASN
-5
A
LEU
-4
n
17
LEU
-4
A
TYR
-3
n
18
TYR
-3
A
PHE
-2
n
19
PHE
-2
A
GLN
-1
n
20
GLN
-1
A
GLY
0
n
21
GLY
0
A
MSE
1
n
22
MSE
1
A
LEU
2
n
23
LEU
2
A
THR
3
n
24
THR
3
A
GLU
4
n
25
GLU
4
A
VAL
5
n
26
VAL
5
A
SER
6
n
27
SER
6
A
ASP
7
n
28
ASP
7
A
THR
8
n
29
THR
8
A
ARG
9
n
30
ARG
9
A
ILE
10
n
31
ILE
10
A
ALA
11
n
32
ALA
11
A
HIS
12
n
33
HIS
12
A
LYS
13
n
34
LYS
13
A
LYS
14
n
35
LYS
14
A
PHE
15
n
36
PHE
15
A
GLY
16
n
37
GLY
16
A
LEU
17
n
38
LEU
17
A
PHE
18
n
39
PHE
18
A
TYR
19
n
40
TYR
19
A
PRO
20
n
41
PRO
20
A
SER
21
n
42
SER
21
A
VAL
22
n
43
VAL
22
A
SER
23
n
44
SER
23
A
ARG
24
n
45
ARG
24
A
PRO
25
n
46
PRO
25
A
SER
26
n
47
SER
26
A
ILE
27
n
48
ILE
27
A
PHE
28
n
49
PHE
28
A
VAL
29
n
50
VAL
29
A
GLU
30
n
51
GLU
30
A
GLY
31
n
52
GLY
31
A
GLU
32
n
53
GLU
32
A
ASP
33
n
54
ASP
33
A
ARG
34
n
55
ARG
34
A
LYS
35
n
56
LYS
35
A
ASN
36
n
57
ASN
36
A
PHE
37
n
58
PHE
37
A
LEU
38
n
59
LEU
38
A
GLN
39
n
60
GLN
39
A
GLY
40
n
61
GLY
40
A
ILE
41
n
62
ILE
41
A
ALA
42
n
63
ALA
42
A
SER
43
n
64
SER
43
A
GLN
44
n
65
GLN
44
A
ASP
45
n
66
ASP
45
A
ILE
46
n
67
ILE
46
A
LEU
47
n
68
LEU
47
A
LYS
48
n
69
LYS
48
A
GLN
49
n
70
GLN
49
A
ASP
50
n
71
ASP
50
A
GLU
51
n
72
GLU
51
A
LYS
52
n
73
LYS
52
A
SER
53
n
74
SER
53
A
LEU
54
n
75
LEU
54
A
SER
55
n
76
SER
55
A
TYR
56
n
77
TYR
56
A
SER
57
n
78
SER
57
A
PHE
58
n
79
PHE
58
A
PHE
59
n
80
PHE
59
A
LEU
60
n
81
LEU
60
A
ASN
61
n
82
ASN
61
A
PRO
62
n
83
PRO
62
A
LYS
63
n
84
LYS
63
A
ALA
64
n
85
ALA
64
A
ARG
65
n
86
ARG
65
A
ILE
66
n
87
ILE
66
A
LEU
67
n
88
LEU
67
A
PHE
68
n
89
PHE
68
A
ASP
69
n
90
ASP
69
A
ALA
70
n
91
ALA
70
A
TRP
71
n
92
TRP
71
A
CYS
72
n
93
CYS
72
A
GLY
73
n
94
GLY
73
A
ASN
74
n
95
ASN
74
A
PHE
75
n
96
PHE
75
A
GLU
76
n
97
GLU
76
A
ASP
77
n
98
ASP
77
A
LYS
78
n
99
LYS
78
A
ILE
79
n
100
ILE
79
A
ALA
80
n
101
ALA
80
A
LEU
81
n
102
LEU
81
A
PHE
82
n
103
PHE
82
A
PRO
83
n
104
PRO
83
A
PRO
84
n
105
PRO
84
A
ALA
85
n
106
ALA
85
A
GLY
86
n
107
GLY
86
A
THR
87
n
108
THR
87
A
ARG
88
n
109
ARG
88
A
GLU
89
n
110
GLU
89
A
GLU
90
n
111
GLU
90
A
PHE
91
n
112
PHE
91
A
VAL
92
n
113
VAL
92
A
ASN
93
n
114
ASN
93
A
HIS
94
n
115
HIS
94
A
LEU
95
n
116
LEU
95
A
LYS
96
n
117
LYS
96
A
LYS
97
n
118
LYS
97
A
TYR
98
n
119
TYR
98
A
LEU
99
n
120
LEU
99
A
PHE
100
n
121
PHE
100
A
PHE
101
n
122
PHE
101
A
ARG
102
n
123
ARG
102
A
THR
103
n
124
THR
103
A
LYS
104
n
125
LYS
104
A
ALA
105
n
126
ALA
105
A
LYS
106
n
127
LYS
106
A
ILE
107
n
128
ILE
107
A
THR
108
n
129
THR
108
A
ASP
109
n
130
ASP
109
A
MSE
110
n
131
MSE
110
A
SER
111
n
132
SER
111
A
ASP
112
n
133
ASP
112
A
HIS
113
n
134
HIS
113
A
PHE
114
n
135
PHE
114
A
ARG
115
n
136
ARG
115
A
GLU
116
n
137
GLU
116
A
ILE
117
n
138
ILE
117
A
ARG
118
n
139
ARG
118
A
LEU
119
n
140
LEU
119
A
VAL
120
n
141
VAL
120
A
GLY
121
n
142
GLY
121
A
PRO
122
n
143
PRO
122
A
GLU
123
n
144
GLU
123
A
THR
124
n
145
THR
124
A
ILE
125
n
146
ILE
125
A
SER
126
n
147
SER
126
A
VAL
127
n
148
VAL
127
A
LEU
128
n
149
LEU
128
A
LEU
129
n
150
LEU
129
A
SER
130
n
151
SER
130
A
LEU
131
n
152
LEU
131
A
PHE
132
n
153
PHE
132
A
ASP
133
n
154
ASP
133
A
ASN
134
n
155
ASN
134
A
ASN
135
n
156
ASN
135
A
PHE
136
n
157
PHE
136
A
SER
137
n
158
SER
137
A
GLY
138
n
159
GLY
138
A
SER
139
n
160
SER
139
A
SER
140
n
161
SER
140
A
PHE
141
n
162
PHE
141
A
ARG
142
n
163
ARG
142
A
MSE
143
n
164
MSE
143
A
LEU
144
n
165
LEU
144
A
LYS
145
n
166
LYS
145
A
ASN
146
n
167
ASN
146
A
GLY
147
n
168
GLY
147
A
GLY
148
n
169
GLY
148
A
TYR
149
n
170
TYR
149
A
VAL
150
n
171
VAL
150
A
LEU
151
n
172
LEU
151
A
ILE
152
n
173
ILE
152
A
HIS
153
n
174
HIS
153
A
PRO
154
n
175
PRO
154
A
THR
155
n
176
THR
155
A
SER
156
n
177
SER
156
A
PHE
157
n
178
PHE
157
A
GLN
158
n
179
GLN
158
A
HIS
159
n
180
HIS
159
A
ASN
160
n
181
ASN
160
A
LEU
161
n
182
LEU
161
A
ASP
162
n
183
ASP
162
A
VAL
163
n
184
VAL
163
A
GLY
164
n
185
GLY
164
A
LEU
165
n
186
LEU
165
A
GLN
166
n
187
GLN
166
A
ALA
167
n
188
ALA
167
A
ASP
168
n
189
ASP
168
A
LEU
169
n
190
LEU
169
A
PHE
170
n
191
PHE
170
A
ILE
171
n
192
ILE
171
A
PRO
172
n
193
PRO
172
A
ILE
173
n
194
ILE
173
A
ASP
174
n
195
ASP
174
A
GLN
175
n
196
GLN
175
A
PHE
176
n
197
PHE
176
A
GLU
177
n
198
GLU
177
A
THR
178
n
199
THR
178
A
THR
179
n
200
THR
179
A
GLN
180
n
201
GLN
180
A
LYS
181
n
202
LYS
181
A
SER
182
n
203
SER
182
A
LEU
183
n
204
LEU
183
A
GLU
184
n
205
GLU
184
A
ASP
185
n
206
ASP
185
A
PHE
186
n
207
PHE
186
A
THR
187
n
208
THR
187
A
SER
188
n
209
SER
188
A
ASN
189
n
210
ASN
189
A
LYS
190
n
211
LYS
190
A
GLY
191
n
212
GLY
191
A
GLY
192
n
213
GLY
192
A
VAL
193
n
214
VAL
193
A
LEU
194
n
215
LEU
194
A
LEU
195
n
216
LEU
195
A
ASP
196
n
217
ASP
196
A
GLU
197
n
218
GLU
197
A
SER
198
n
219
SER
198
A
SER
199
n
220
SER
199
A
TYR
200
n
221
TYR
200
A
LEU
201
n
222
LEU
201
A
ALA
202
n
223
ALA
202
A
TYR
203
n
224
TYR
203
A
LEU
204
n
225
LEU
204
A
THR
205
n
226
THR
205
A
GLU
206
n
227
GLU
206
A
LYS
207
n
228
LYS
207
A
GLY
208
n
229
GLY
208
A
ILE
209
n
230
ILE
209
A
PRO
210
n
231
PRO
210
A
LEU
211
n
232
LEU
211
A
PHE
212
n
233
PHE
212
A
PRO
213
n
234
PRO
213
A
SER
214
n
235
SER
214
A
GLU
215
n
236
GLU
215
A
LEU
216
n
237
LEU
216
A
ASN
217
n
238
ASN
217
A
ASP
218
n
239
ASP
218
A
SER
219
n
240
SER
219
A
PHE
220
n
241
PHE
220
A
PHE
221
n
242
PHE
221
A
PRO
222
n
243
PRO
222
A
ALA
223
n
244
ALA
223
A
GLU
224
n
245
GLU
224
A
ALA
225
n
246
ALA
225
A
GLY
226
n
247
GLY
226
A
LEU
227
n
248
LEU
227
A
ASP
228
n
249
ASP
228
A
SER
229
n
250
SER
229
A
VAL
230
n
251
VAL
230
A
GLY
231
n
252
GLY
231
A
VAL
232
n
253
VAL
232
A
SER
233
n
254
SER
233
A
TYR
234
n
255
TYR
234
A
ASN
235
n
256
ASN
235
A
LYS
236
n
257
LYS
236
A
GLY
237
n
258
GLY
237
A
CYS
238
n
259
CYS
238
A
TYR
239
n
260
TYR
239
A
VAL
240
n
261
VAL
240
A
GLY
241
n
262
GLY
241
A
GLN
242
n
263
GLN
242
A
GLU
243
n
264
GLU
243
A
PRO
244
n
265
PRO
244
A
VAL
245
n
266
VAL
245
A
THR
246
n
267
THR
246
A
ARG
247
n
268
ARG
247
A
LEU
248
n
269
LEU
248
A
LYS
249
n
270
LYS
249
A
PHE
250
n
271
PHE
250
A
GLN
251
n
272
GLN
251
A
GLY
252
n
273
GLY
252
A
HIS
253
n
274
HIS
253
A
LEU
254
n
275
LEU
254
A
ASN
255
n
276
ASN
255
A
ARG
256
n
277
ARG
256
A
SER
257
n
278
SER
257
A
LEU
258
n
279
LEU
258
A
ALA
259
n
280
ALA
259
A
GLY
260
n
281
GLY
260
A
PHE
261
n
282
PHE
261
A
ARG
262
n
283
ARG
262
A
LEU
263
n
284
LEU
263
A
GLU
264
n
285
GLU
264
A
GLY
265
n
286
GLY
265
A
n
287
266
A
n
288
267
A
n
289
268
A
PRO
269
n
290
PRO
269
A
LYS
270
n
291
LYS
270
A
MSE
271
n
292
MSE
271
A
GLU
272
n
293
GLU
272
A
PHE
273
n
294
PHE
273
A
PRO
274
n
295
PRO
274
A
VAL
275
n
296
VAL
275
A
THR
276
n
297
THR
276
A
LEU
277
n
298
LEU
277
A
PHE
278
n
299
PHE
278
A
ASN
279
n
300
ASN
279
A
PRO
280
n
301
PRO
280
A
LYS
281
n
302
LYS
281
A
ASP
282
n
303
ASP
282
A
GLY
283
n
304
GLY
283
A
ASN
284
n
305
ASN
284
A
GLU
285
n
306
GLU
285
A
ALA
286
n
307
ALA
286
A
GLY
287
n
308
GLY
287
A
ILE
288
n
309
ILE
288
A
LEU
289
n
310
LEU
289
A
THR
290
n
311
THR
290
A
ARG
291
n
312
ARG
291
A
THR
292
n
313
THR
292
A
SER
293
n
314
SER
293
A
SER
294
n
315
SER
294
A
SER
295
n
316
SER
295
A
ASP
296
n
317
ASP
296
A
ILE
297
n
318
ILE
297
A
LEU
298
n
319
LEU
298
A
GLY
299
n
320
GLY
299
A
SER
300
n
321
SER
300
A
GLY
301
n
322
GLY
301
A
ILE
302
n
323
ILE
302
A
GLY
303
n
324
GLY
303
A
LEU
304
n
325
LEU
304
A
GLY
305
n
326
GLY
305
A
TYR
306
n
327
TYR
306
A
ILE
307
n
328
ILE
307
A
LYS
308
n
329
LYS
308
A
ARG
309
n
330
ARG
309
A
ASN
310
n
331
ASN
310
A
PHE
311
n
332
PHE
311
A
SER
312
n
333
SER
312
A
GLU
313
n
334
GLU
313
A
ASN
314
n
335
ASN
314
A
GLY
315
n
336
GLY
315
A
THR
316
n
337
THR
316
A
GLU
317
n
338
GLU
317
A
LEU
318
n
339
LEU
318
A
LEU
319
n
340
LEU
319
A
LEU
320
n
341
LEU
320
A
PRO
321
n
342
PRO
321
A
ASP
322
n
343
ASP
322
A
ALA
323
n
344
ALA
323
A
GLN
324
n
345
GLN
324
A
LEU
325
n
346
LEU
325
A
VAL
326
n
347
VAL
326
A
ARG
327
n
348
ARG
327
A
VAL
328
n
349
VAL
328
A
HIS
329
n
350
HIS
329
A
SER
330
n
351
SER
330
A
LEU
331
n
352
LEU
331
A
PRO
332
n
353
PRO
332
A
PHE
333
n
354
PHE
333
A
VAL
334
n
355
VAL
334
A
0.3488
0.6893
0.4253
2.3519
0.2413
1.0328
0.0662
-0.0671
0.0621
0.3068
0.0242
-0.1755
0.0649
-0.0171
-0.0905
-0.1129
-0.0079
0.0156
-0.0433
-0.0437
-0.0126
refined
46.3493
-22.8374
5.1566
X-RAY DIFFRACTION
0.0139
0.0689
-0.1103
0.5110
-0.3613
0.4649
0.0026
-0.0013
0.0106
0.0093
0.0392
-0.0276
0.0257
0.0281
-0.0418
0.0247
0.0727
0.0767
0.0906
0.0485
0.0536
refined
51.5251
-38.8725
-8.6258
X-RAY DIFFRACTION
1.1149
0.2377
0.2982
1.9035
-0.2094
1.5423
0.0510
-0.1126
-0.0740
0.1210
-0.0229
-0.2019
0.2010
-0.0861
-0.0280
-0.0703
-0.0176
0.0073
-0.0706
-0.0164
-0.0726
refined
45.8782
-33.2803
3.6791
X-RAY DIFFRACTION
0.9314
0.4425
0.1005
1.7302
0.4495
0.7322
0.0039
-0.0309
0.0681
-0.0356
0.0568
-0.0886
-0.0602
-0.1340
-0.0606
-0.0639
-0.0141
0.0168
-0.0694
-0.0284
-0.0214
refined
45.1290
-21.5144
-2.8199
X-RAY DIFFRACTION
3.8747
-0.2907
0.3513
5.2516
0.4092
1.2859
-0.0099
0.0640
0.3388
-0.3391
-0.1145
0.2509
-0.1239
-0.2210
0.1244
-0.0787
0.0418
-0.0166
-0.1056
-0.0033
-0.0102
refined
37.0229
-4.0687
-4.8309
X-RAY DIFFRACTION
1.4793
-0.6507
1.1489
2.1199
0.0375
2.2319
0.0392
0.2027
0.4681
-0.2299
-0.1104
-0.2705
-0.2523
0.0252
0.0712
-0.0451
0.0071
0.0600
-0.1044
-0.0079
0.0512
refined
43.4616
-3.9329
-2.6626
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain A
software_defined_assembly
PISA
1
monomeric
A
MSE
1
SELENOMETHIONINE
A
MSE
22
MET
A
MSE
110
SELENOMETHIONINE
A
MSE
131
MET
A
MSE
143
SELENOMETHIONINE
A
MSE
164
MET
A
MSE
271
SELENOMETHIONINE
A
MSE
292
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
140
A
N
SER
161
A
O
ILE
152
A
O
ILE
173
A
N
TYR
149
A
N
TYR
170
A
O
PHE
170
A
O
PHE
191
A
O
LEU
169
A
O
LEU
190
A
N
ILE
117
A
N
ILE
138
A
O
ARG
118
A
O
ARG
139
A
N
PHE
18
A
N
PHE
39
A
N
LEU
17
A
N
LEU
38
A
O
VAL
193
A
O
VAL
214
A
N
SER
55
A
N
SER
76
A
O
CYS
72
A
O
CYS
93
A
N
GLY
73
A
N
GLY
94
A
O
ALA
80
A
O
ALA
101
A
O
LEU
81
A
O
LEU
102
A
N
ILE
27
A
N
ILE
48
A
N
PHE
28
A
N
PHE
49
A
O
THR
108
A
O
THR
129
A
N
ALA
259
A
N
ALA
280
A
O
GLY
305
A
O
GLY
326
A
O
ILE
302
A
O
ILE
323
A
N
SER
293
A
N
SER
314
A
O
LEU
289
A
O
LEU
310
A
N
VAL
275
A
N
VAL
296
A
N
PHE
278
A
N
PHE
299
A
O
LEU
319
A
O
LEU
340
A
N
LEU
318
A
N
LEU
339
A
O
VAL
326
A
O
VAL
347
A
O
HIS
329
A
O
HIS
350
A
N
GLY
260
A
N
GLY
281
1
A
HOH
469
F
HOH
1
A
MSE
-20
A
MSE
1
1
Y
1
A
GLY
-19
A
GLY
2
1
Y
1
A
SER
-18
A
SER
3
1
Y
1
A
SER
-17
A
SER
4
1
Y
1
A
HIS
-16
A
HIS
5
1
Y
1
A
HIS
-15
A
HIS
6
1
Y
1
A
HIS
-14
A
HIS
7
1
Y
1
A
HIS
-13
A
HIS
8
1
Y
1
A
HIS
-12
A
HIS
9
1
Y
1
A
HIS
-11
A
HIS
10
1
Y
1
A
SER
-10
A
SER
11
1
Y
1
A
SER
-9
A
SER
12
1
Y
1
A
GLY
-8
A
GLY
13
1
Y
1
A
ARG
-7
A
ARG
14
1
Y
1
A
GLU
-6
A
GLU
15
1
Y
1
A
GLY
266
A
GLY
287
1
Y
1
A
PRO
267
A
PRO
288
1
Y
1
A
PHE
268
A
PHE
289
1
Y
1
A
LYS
14
-118.19
-91.03
1
A
GLU
76
53.92
-130.30
1
A
ASN
134
76.54
-122.02
1
A
PHE
157
-137.05
-118.09
44.34
1.88400
0.00000
0.00000
1.88400
0.00000
-3.76800
0.950
0.940
HYDROGEN ATOMS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.214
0.184
0.185
2.00
36.56
1393
34384
34384
4.050
98.0
0.179
RANDOM
1
isotropic
THROUGHOUT
0.000
SAD
0.131
0.124
0.124
ML
0.24
2.00
36.56
175
2855
4
0
2676
0.013
5401
HARMONIC
2.000
1.17
9751
HARMONIC
2.000
1474
SINUSOIDAL
2.000
69
HARMONIC
2.000
786
HARMONIC
5.000
5401
HARMONIC
20.000
1
SEMIHARMONIC
5.000
5.08
2.98
344
SEMIHARMONIC
5.00
5811
SEMIHARMONIC
4.00
0.2079
0.1835
0.1845
2.06
113
2629
2742
17
4.12
98.03
36.98
2.000
50.000
3TTG
34441
-3.000
0.09900
1
23.5000
11.800
98.3
0.67300
2.00
2.03
3.000
1
5.20
94.4
data collection
SBC-Collect
model building
SHELX
phasing
MLPHARE
model building
DM
model building
ARP/wARP
model building
Coot
refinement
BUSTER
2.10.0
data reduction
HKL-3000
data scaling
HKL-3000
phasing
SHELX
phasing
DM
Putative aminomethyltransferase
Crystal structure of putative aminomethyltransferase from Leptospirillum rubarum
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN.
A
LEU
2
A
LEU
23
HELX_P
A
SER
6
A
SER
27
5
1
5
A
ASP
7
A
ASP
28
HELX_P
A
LYS
14
A
LYS
35
1
2
8
A
ASP
33
A
ASP
54
HELX_P
A
GLY
40
A
GLY
61
1
3
8
A
THR
87
A
THR
108
HELX_P
A
TYR
98
A
TYR
119
1
4
12
A
GLU
123
A
GLU
144
HELX_P
A
PHE
132
A
PHE
153
1
5
10
A
PHE
157
A
PHE
178
HELX_P
A
LEU
161
A
LEU
182
5
6
5
A
GLN
175
A
GLN
196
HELX_P
A
GLY
191
A
GLY
212
1
7
17
A
ASP
196
A
ASP
217
HELX_P
A
LYS
207
A
LYS
228
1
8
12
A
LEU
227
A
LEU
248
HELX_P
A
VAL
232
A
VAL
253
1
9
6
A
GLY
241
A
GLY
262
HELX_P
A
GLN
251
A
GLN
272
1
10
11
A
ASN
310
A
ASN
331
HELX_P
A
SER
312
A
SER
333
5
11
3
disulf
2.108
A
CYS
238
A
SG
CYS
259
1_555
A
CYS
238
A
SG
CYS
259
8_554
covale
1.328
A
GLY
0
A
C
GLY
21
1_555
A
MSE
1
A
N
MSE
22
1_555
covale
1.340
A
MSE
1
A
C
MSE
22
1_555
A
LEU
2
A
N
LEU
23
1_555
covale
1.334
A
ASP
109
A
C
ASP
130
1_555
A
MSE
110
A
N
MSE
131
1_555
covale
1.313
A
MSE
110
A
C
MSE
131
1_555
A
SER
111
A
N
SER
132
1_555
covale
1.355
A
ARG
142
A
C
ARG
163
1_555
A
MSE
143
A
N
MSE
164
1_555
covale
1.324
A
MSE
143
A
C
MSE
164
1_555
A
LEU
144
A
N
LEU
165
1_555
covale
1.364
A
LYS
270
A
C
LYS
291
1_555
A
MSE
271
A
N
MSE
292
1_555
covale
1.348
A
MSE
271
A
C
MSE
292
1_555
A
GLU
272
A
N
GLU
293
1_555
TRANSFERASE
Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, transferase
A
PHE
212
A
PHE
233
1
A
PRO
213
A
PRO
234
8.11
A
PHE
273
A
PHE
294
1
A
PRO
274
A
PRO
295
-1.00
A
LEU
331
A
LEU
352
1
A
PRO
332
A
PRO
353
-13.13
A3EQP6_9BACT
UNP
1
1
A3EQP6
MLTEVSDTRIAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFEDKIA
LFPPAGTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFSGSSFRMLKNGGYVLIHPTSFQHN
LDVGLQADLFIPIDQFETTQKSLEDFTSNKGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAGLDSVGVSYNKGCYV
GQEPVTRLKFQGHLNRSLAGFRLEGGPFPKMEFPVTLFNPKDGNEAGILTRTSSSDILGSGIGLGYIKRNFSENGTELLL
PDAQLVRVHSLPFV
1
334
3TTG
1
334
A3EQP6
A
1
22
355
1
EXPRESSION TAG
MSE
-20
3TTG
A
A3EQP6
UNP
1
1
EXPRESSION TAG
GLY
-19
3TTG
A
A3EQP6
UNP
2
1
EXPRESSION TAG
SER
-18
3TTG
A
A3EQP6
UNP
3
1
EXPRESSION TAG
SER
-17
3TTG
A
A3EQP6
UNP
4
1
EXPRESSION TAG
HIS
-16
3TTG
A
A3EQP6
UNP
5
1
EXPRESSION TAG
HIS
-15
3TTG
A
A3EQP6
UNP
6
1
EXPRESSION TAG
HIS
-14
3TTG
A
A3EQP6
UNP
7
1
EXPRESSION TAG
HIS
-13
3TTG
A
A3EQP6
UNP
8
1
EXPRESSION TAG
HIS
-12
3TTG
A
A3EQP6
UNP
9
1
EXPRESSION TAG
HIS
-11
3TTG
A
A3EQP6
UNP
10
1
EXPRESSION TAG
SER
-10
3TTG
A
A3EQP6
UNP
11
1
EXPRESSION TAG
SER
-9
3TTG
A
A3EQP6
UNP
12
1
EXPRESSION TAG
GLY
-8
3TTG
A
A3EQP6
UNP
13
1
EXPRESSION TAG
ARG
-7
3TTG
A
A3EQP6
UNP
14
1
EXPRESSION TAG
GLU
-6
3TTG
A
A3EQP6
UNP
15
1
EXPRESSION TAG
ASN
-5
3TTG
A
A3EQP6
UNP
16
1
EXPRESSION TAG
LEU
-4
3TTG
A
A3EQP6
UNP
17
1
EXPRESSION TAG
TYR
-3
3TTG
A
A3EQP6
UNP
18
1
EXPRESSION TAG
PHE
-2
3TTG
A
A3EQP6
UNP
19
1
EXPRESSION TAG
GLN
-1
3TTG
A
A3EQP6
UNP
20
1
EXPRESSION TAG
GLY
0
3TTG
A
A3EQP6
UNP
21
6
5
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
140
A
SER
161
A
MSE
143
A
MSE
164
A
TYR
149
A
TYR
170
A
ILE
152
A
ILE
173
A
GLN
166
A
GLN
187
A
PRO
172
A
PRO
193
A
PHE
114
A
PHE
135
A
VAL
120
A
VAL
141
A
GLY
16
A
GLY
37
A
PHE
18
A
PHE
39
A
VAL
193
A
VAL
214
A
LEU
194
A
LEU
215
A
LEU
54
A
LEU
75
A
LEU
60
A
LEU
81
A
ILE
66
A
ILE
87
A
PHE
75
A
PHE
96
A
LYS
78
A
LYS
99
A
PHE
82
A
PHE
103
A
ILE
27
A
ILE
48
A
GLU
30
A
GLU
51
A
LYS
106
A
LYS
127
A
ASP
109
A
ASP
130
A
ARG
256
A
ARG
277
A
LEU
263
A
LEU
284
A
SER
300
A
SER
321
A
LYS
308
A
LYS
329
A
GLU
285
A
GLU
306
A
SER
295
A
SER
316
A
VAL
275
A
VAL
296
A
PHE
278
A
PHE
299
A
GLU
317
A
GLU
338
A
LEU
319
A
LEU
340
A
LEU
325
A
LEU
346
A
HIS
329
A
HIS
350
A
ARG
256
A
ARG
277
A
LEU
263
A
LEU
284
BINDING SITE FOR RESIDUE CL A 335
Software
4
BINDING SITE FOR RESIDUE CL A 336
Software
1
BINDING SITE FOR RESIDUE CL A 337
Software
3
BINDING SITE FOR RESIDUE CL A 338
Software
2
A
GLY
138
A
GLY
159
4
1_555
A
SER
139
A
SER
160
4
1_555
A
PRO
154
A
PRO
175
4
1_555
A
THR
155
A
THR
176
4
1_555
A
ARG
256
A
ARG
277
1
1_555
A
HIS
94
A
HIS
115
3
1_555
A
LYS
97
A
LYS
118
3
1_555
A
TYR
98
A
TYR
119
3
1_555
A
LYS
106
A
LYS
127
2
1_555
A
ILE
107
A
ILE
128
2
1_555
96
P 43 21 2