0.016583
0.000000
0.000000
0.000000
0.011743
0.000000
0.000000
0.000000
0.024440
0.00000
0.00000
0.00000
Stura, E.A.
Dive, V.
Devel, L.
Czarny, B.
Beau, F.
Vera, L.
Cassar-Lajeunesse, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
60.303
85.160
40.916
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C26 H26 N2 O4
430.496
N~2~-[3-(1,1':4',1''-terphenyl-4-yl)propanoyl]-L-alpha-glutamine
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
C
N
76
N
N
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
N
N
81
S
C
N
82
N
C
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
O
N
88
N
C
Y
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
C
Y
98
N
C
Y
99
N
C
Y
100
N
C
Y
101
N
C
Y
102
N
C
Y
103
N
C
Y
104
N
C
Y
105
N
C
Y
106
N
C
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
N
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
N
C
Y
187
N
C
Y
188
N
N
Y
189
N
C
Y
190
N
C
Y
191
N
N
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
S
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
S
N
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
C
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
R
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
N
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
N
421
N
O
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
N
439
N
C
N
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
doub
Y
98
N
sing
Y
99
N
sing
N
100
N
sing
Y
101
N
doub
N
102
N
sing
Y
103
N
sing
N
104
N
sing
Y
105
N
doub
N
106
N
sing
N
107
N
sing
Y
108
N
doub
Y
109
N
sing
N
110
N
sing
Y
111
N
doub
N
112
N
sing
Y
113
N
sing
N
114
N
sing
Y
115
N
doub
Y
116
N
sing
N
117
N
sing
N
118
N
sing
Y
119
N
doub
Y
120
N
sing
Y
121
N
sing
N
122
N
sing
Y
123
N
doub
N
124
N
sing
Y
125
N
sing
N
126
N
sing
Y
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
Y
187
N
sing
Y
188
N
doub
Y
189
N
doub
N
190
N
sing
Y
191
N
sing
N
192
N
sing
Y
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
Y
311
N
doub
Y
312
N
sing
Y
313
N
sing
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
287
26647
26656
10.1074/jbc.M112.380782
22689580
Simple pseudo-dipeptides with a P2' glutamate: a novel inhibitor family of matrix metalloproteases and other metzincins.
2012
10.2210/pdb3tvc/pdb
pdb_00003tvc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
bent cylindrical mirror
CCD
2011-06-13
ADSC QUANTUM 315r
horizontally diffracting Si (111) monochromator and Pt coated mirrors in Kirkpatrick-Baez geometry for focusing
SINGLE WAVELENGTH
M
x-ray
1
0.972420
1.0
ID23-1
ESRF
0.972420
SYNCHROTRON
ESRF BEAMLINE ID23-1
19024.166
Collagenase 3
3.4.24.-
MMP-13 catalytic subunit (UNP residues 104-272)
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
430.496
N~2~-[3-(1,1':4',1''-terphenyl-4-yl)propanoyl]-L-alpha-glutamine
1
syn
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
3
syn
non-polymer
18.015
water
105
nat
water
Matrix metalloproteinase-13, MMP-13
no
no
YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSG
LLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQ
SLYGPGDED
YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSG
LLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQ
SLYGPGDED
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Expressed as Pro-MMP13
sample
MMP13
9606
Homo sapiens
562
Escherichia coli
BL21
PET24A
1
2.76
55.45
VAPOR DIFFUSION, SITTING DROP
5.5
PROTEIN-INHIBITOR SOLUTION: MMP13 AT 20 MG/ML CO-CRYSTALLIZED WITH E3P AT 1.1 MILLI-M. RESERVOIR SOLUTION: 17.5% PEG 20K, 0.1 M MES, 0.02 M NACL. CRYOPROTECTANT: 5% DIETHYLENE GLYCOL, 5% ETHYLENE GLYCOL, 5% MPD, 5% PROPYLENE GLYCOL, 5% DMSO, 5% GLYCEROL, 0.005 M 3-(-PYRIDINIO)-1-PROPANESULFONATE, 10% PEG 20K, 0.033 M SODIUM ACETATE, 0.033 M ADA, 0.033 M BICINE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-06-20
1
1
2012-10-17
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-09-20
REL
REL
ZN
ZINC ION
CA
CALCIUM ION
E3P
N~2~-[3-(1,1':4',1''-terphenyl-4-yl)propanoyl]-L-alpha-glutamine
PEG
DI(HYDROXYETHYL)ETHER
HOH
water
3QJ2
3QJ2 catalytic domain only (Chain A)
PDB
experimental model
ZN
501
2
ZN
ZN
501
A
ZN
502
2
ZN
ZN
502
A
CA
503
3
CA
CA
503
A
CA
504
3
CA
CA
504
A
CA
505
3
CA
CA
505
A
E3P
1
4
E3P
E3P
1
A
PEG
1
5
PEG
PEG
273
A
PEG
2
5
PEG
PEG
2
A
PEG
3
5
PEG
PEG
3
A
HOH
4
6
HOH
HOH
4
A
HOH
5
6
HOH
HOH
5
A
HOH
6
6
HOH
HOH
6
A
HOH
7
6
HOH
HOH
7
A
HOH
8
6
HOH
HOH
8
A
HOH
9
6
HOH
HOH
9
A
HOH
10
6
HOH
HOH
10
A
HOH
11
6
HOH
HOH
11
A
HOH
12
6
HOH
HOH
12
A
HOH
13
6
HOH
HOH
13
A
HOH
14
6
HOH
HOH
14
A
HOH
15
6
HOH
HOH
15
A
HOH
16
6
HOH
HOH
16
A
HOH
17
6
HOH
HOH
17
A
HOH
18
6
HOH
HOH
18
A
HOH
19
6
HOH
HOH
19
A
HOH
20
6
HOH
HOH
20
A
HOH
21
6
HOH
HOH
21
A
HOH
22
6
HOH
HOH
22
A
HOH
23
6
HOH
HOH
23
A
HOH
24
6
HOH
HOH
24
A
HOH
25
6
HOH
HOH
25
A
HOH
26
6
HOH
HOH
26
A
HOH
27
6
HOH
HOH
27
A
HOH
28
6
HOH
HOH
28
A
HOH
29
6
HOH
HOH
29
A
HOH
30
6
HOH
HOH
30
A
HOH
31
6
HOH
HOH
31
A
HOH
32
6
HOH
HOH
32
A
HOH
33
6
HOH
HOH
33
A
HOH
34
6
HOH
HOH
34
A
HOH
35
6
HOH
HOH
35
A
HOH
36
6
HOH
HOH
36
A
HOH
37
6
HOH
HOH
37
A
HOH
38
6
HOH
HOH
38
A
HOH
39
6
HOH
HOH
39
A
HOH
40
6
HOH
HOH
40
A
HOH
41
6
HOH
HOH
41
A
HOH
42
6
HOH
HOH
42
A
HOH
43
6
HOH
HOH
43
A
HOH
44
6
HOH
HOH
44
A
HOH
45
6
HOH
HOH
45
A
HOH
46
6
HOH
HOH
46
A
HOH
47
6
HOH
HOH
47
A
HOH
48
6
HOH
HOH
48
A
HOH
49
6
HOH
HOH
49
A
HOH
50
6
HOH
HOH
50
A
HOH
51
6
HOH
HOH
51
A
HOH
52
6
HOH
HOH
52
A
HOH
53
6
HOH
HOH
53
A
HOH
54
6
HOH
HOH
54
A
HOH
55
6
HOH
HOH
55
A
HOH
56
6
HOH
HOH
56
A
HOH
57
6
HOH
HOH
57
A
HOH
58
6
HOH
HOH
58
A
HOH
59
6
HOH
HOH
59
A
HOH
60
6
HOH
HOH
60
A
HOH
61
6
HOH
HOH
61
A
HOH
62
6
HOH
HOH
62
A
HOH
63
6
HOH
HOH
63
A
HOH
64
6
HOH
HOH
64
A
HOH
65
6
HOH
HOH
65
A
HOH
66
6
HOH
HOH
66
A
HOH
67
6
HOH
HOH
67
A
HOH
68
6
HOH
HOH
68
A
HOH
69
6
HOH
HOH
69
A
HOH
70
6
HOH
HOH
70
A
HOH
71
6
HOH
HOH
71
A
HOH
72
6
HOH
HOH
72
A
HOH
73
6
HOH
HOH
73
A
HOH
74
6
HOH
HOH
74
A
HOH
75
6
HOH
HOH
75
A
HOH
76
6
HOH
HOH
76
A
HOH
77
6
HOH
HOH
77
A
HOH
78
6
HOH
HOH
78
A
HOH
79
6
HOH
HOH
79
A
HOH
80
6
HOH
HOH
80
A
HOH
81
6
HOH
HOH
81
A
HOH
82
6
HOH
HOH
82
A
HOH
83
6
HOH
HOH
83
A
HOH
84
6
HOH
HOH
84
A
HOH
85
6
HOH
HOH
85
A
HOH
86
6
HOH
HOH
86
A
HOH
87
6
HOH
HOH
87
A
HOH
88
6
HOH
HOH
88
A
HOH
89
6
HOH
HOH
89
A
HOH
90
6
HOH
HOH
90
A
HOH
91
6
HOH
HOH
91
A
HOH
92
6
HOH
HOH
92
A
HOH
93
6
HOH
HOH
93
A
HOH
94
6
HOH
HOH
94
A
HOH
95
6
HOH
HOH
95
A
HOH
96
6
HOH
HOH
96
A
HOH
97
6
HOH
HOH
97
A
HOH
98
6
HOH
HOH
98
A
HOH
99
6
HOH
HOH
99
A
HOH
100
6
HOH
HOH
100
A
HOH
101
6
HOH
HOH
101
A
HOH
102
6
HOH
HOH
102
A
HOH
103
6
HOH
HOH
103
A
HOH
1
6
HOH
HOH
274
A
HOH
2
6
HOH
HOH
275
A
HOH
3
6
HOH
HOH
276
A
HOH
104
6
HOH
HOH
277
A
HOH
105
6
HOH
HOH
278
A
TYR
104
n
1
TYR
104
A
ASN
105
n
2
ASN
105
A
VAL
106
n
3
VAL
106
A
PHE
107
n
4
PHE
107
A
PRO
108
n
5
PRO
108
A
ARG
109
n
6
ARG
109
A
THR
110
n
7
THR
110
A
LEU
111
n
8
LEU
111
A
LYS
112
n
9
LYS
112
A
TRP
113
n
10
TRP
113
A
SER
114
n
11
SER
114
A
LYS
115
n
12
LYS
115
A
MET
116
n
13
MET
116
A
ASN
117
n
14
ASN
117
A
LEU
118
n
15
LEU
118
A
THR
119
n
16
THR
119
A
TYR
120
n
17
TYR
120
A
ARG
121
n
18
ARG
121
A
ILE
122
n
19
ILE
122
A
VAL
123
n
20
VAL
123
A
ASN
124
n
21
ASN
124
A
TYR
125
n
22
TYR
125
A
THR
126
n
23
THR
126
A
PRO
127
n
24
PRO
127
A
ASP
128
n
25
ASP
128
A
MET
129
n
26
MET
129
A
THR
130
n
27
THR
130
A
HIS
131
n
28
HIS
131
A
SER
132
n
29
SER
132
A
GLU
133
n
30
GLU
133
A
VAL
134
n
31
VAL
134
A
GLU
135
n
32
GLU
135
A
LYS
136
n
33
LYS
136
A
ALA
137
n
34
ALA
137
A
PHE
138
n
35
PHE
138
A
LYS
139
n
36
LYS
139
A
LYS
140
n
37
LYS
140
A
ALA
141
n
38
ALA
141
A
PHE
142
n
39
PHE
142
A
LYS
143
n
40
LYS
143
A
VAL
144
n
41
VAL
144
A
TRP
145
n
42
TRP
145
A
SER
146
n
43
SER
146
A
ASP
147
n
44
ASP
147
A
VAL
148
n
45
VAL
148
A
THR
149
n
46
THR
149
A
PRO
150
n
47
PRO
150
A
LEU
151
n
48
LEU
151
A
ASN
152
n
49
ASN
152
A
PHE
153
n
50
PHE
153
A
THR
154
n
51
THR
154
A
ARG
155
n
52
ARG
155
A
LEU
156
n
53
LEU
156
A
HIS
157
n
54
HIS
157
A
ASP
158
n
55
ASP
158
A
GLY
159
n
56
GLY
159
A
ILE
160
n
57
ILE
160
A
ALA
161
n
58
ALA
161
A
ASP
162
n
59
ASP
162
A
ILE
163
n
60
ILE
163
A
MET
164
n
61
MET
164
A
ILE
165
n
62
ILE
165
A
SER
166
n
63
SER
166
A
PHE
167
n
64
PHE
167
A
GLY
168
n
65
GLY
168
A
ILE
169
n
66
ILE
169
A
LYS
170
n
67
LYS
170
A
GLU
171
n
68
GLU
171
A
HIS
172
n
69
HIS
172
A
GLY
173
n
70
GLY
173
A
ASP
174
n
71
ASP
174
A
PHE
175
n
72
PHE
175
A
TYR
176
n
73
TYR
176
A
PRO
177
n
74
PRO
177
A
PHE
178
n
75
PHE
178
A
ASP
179
n
76
ASP
179
A
GLY
180
n
77
GLY
180
A
PRO
181
n
78
PRO
181
A
SER
182
n
79
SER
182
A
GLY
183
n
80
GLY
183
A
LEU
184
n
81
LEU
184
A
LEU
185
n
82
LEU
185
A
ALA
186
n
83
ALA
186
A
HIS
187
n
84
HIS
187
A
ALA
188
n
85
ALA
188
A
PHE
189
n
86
PHE
189
A
PRO
190
n
87
PRO
190
A
PRO
191
n
88
PRO
191
A
GLY
192
n
89
GLY
192
A
PRO
193
n
90
PRO
193
A
ASN
194
n
91
ASN
194
A
TYR
195
n
92
TYR
195
A
GLY
196
n
93
GLY
196
A
GLY
197
n
94
GLY
197
A
ASP
198
n
95
ASP
198
A
ALA
199
n
96
ALA
199
A
HIS
200
n
97
HIS
200
A
PHE
201
n
98
PHE
201
A
ASP
202
n
99
ASP
202
A
ASP
203
n
100
ASP
203
A
ASP
204
n
101
ASP
204
A
GLU
205
n
102
GLU
205
A
THR
206
n
103
THR
206
A
TRP
207
n
104
TRP
207
A
THR
208
n
105
THR
208
A
SER
209
n
106
SER
209
A
SER
210
n
107
SER
210
A
SER
211
n
108
SER
211
A
LYS
212
n
109
LYS
212
A
GLY
213
n
110
GLY
213
A
TYR
214
n
111
TYR
214
A
ASN
215
n
112
ASN
215
A
LEU
216
n
113
LEU
216
A
PHE
217
n
114
PHE
217
A
LEU
218
n
115
LEU
218
A
VAL
219
n
116
VAL
219
A
ALA
220
n
117
ALA
220
A
ALA
221
n
118
ALA
221
A
HIS
222
n
119
HIS
222
A
GLU
223
n
120
GLU
223
A
PHE
224
n
121
PHE
224
A
GLY
225
n
122
GLY
225
A
HIS
226
n
123
HIS
226
A
SER
227
n
124
SER
227
A
LEU
228
n
125
LEU
228
A
GLY
229
n
126
GLY
229
A
LEU
230
n
127
LEU
230
A
ASP
231
n
128
ASP
231
A
HIS
232
n
129
HIS
232
A
SER
233
n
130
SER
233
A
LYS
234
n
131
LYS
234
A
ASP
235
n
132
ASP
235
A
PRO
236
n
133
PRO
236
A
GLY
237
n
134
GLY
237
A
ALA
238
n
135
ALA
238
A
LEU
239
n
136
LEU
239
A
MET
240
n
137
MET
240
A
PHE
241
n
138
PHE
241
A
PRO
242
n
139
PRO
242
A
ILE
243
n
140
ILE
243
A
TYR
244
n
141
TYR
244
A
THR
245
n
142
THR
245
A
TYR
246
n
143
TYR
246
A
THR
247
n
144
THR
247
A
GLY
248
n
145
GLY
248
A
LYS
249
n
146
LYS
249
A
SER
250
n
147
SER
250
A
HIS
251
n
148
HIS
251
A
PHE
252
n
149
PHE
252
A
MET
253
n
150
MET
253
A
LEU
254
n
151
LEU
254
A
PRO
255
n
152
PRO
255
A
ASP
256
n
153
ASP
256
A
ASP
257
n
154
ASP
257
A
ASP
258
n
155
ASP
258
A
VAL
259
n
156
VAL
259
A
GLN
260
n
157
GLN
260
A
GLY
261
n
158
GLY
261
A
ILE
262
n
159
ILE
262
A
GLN
263
n
160
GLN
263
A
SER
264
n
161
SER
264
A
LEU
265
n
162
LEU
265
A
TYR
266
n
163
TYR
266
A
GLY
267
n
164
GLY
267
A
PRO
268
n
165
PRO
268
A
GLY
269
n
166
GLY
269
A
ASP
270
n
167
ASP
270
A
GLU
271
n
168
GLU
271
A
ASP
272
n
169
ASP
272
A
author_defined_assembly
1
monomeric
A
E3P
1
G
O7
E3P
1_555
A
ZN
501
B
ZN
ZN
1_555
A
E3P
1
G
O6
E3P
1_555
53.2
A
E3P
1
G
O7
E3P
1_555
A
ZN
501
B
ZN
ZN
1_555
A
HIS
222
A
NE2
HIS
119
1_555
125.9
A
E3P
1
G
O6
E3P
1_555
A
ZN
501
B
ZN
ZN
1_555
A
HIS
222
A
NE2
HIS
119
1_555
101.1
A
E3P
1
G
O7
E3P
1_555
A
ZN
501
B
ZN
ZN
1_555
A
HIS
226
A
NE2
HIS
123
1_555
123.5
A
E3P
1
G
O6
E3P
1_555
A
ZN
501
B
ZN
ZN
1_555
A
HIS
226
A
NE2
HIS
123
1_555
92.5
A
HIS
222
A
NE2
HIS
119
1_555
A
ZN
501
B
ZN
ZN
1_555
A
HIS
226
A
NE2
HIS
123
1_555
101.3
A
E3P
1
G
O7
E3P
1_555
A
ZN
501
B
ZN
ZN
1_555
A
HIS
232
A
NE2
HIS
129
1_555
92.0
A
E3P
1
G
O6
E3P
1_555
A
ZN
501
B
ZN
ZN
1_555
A
HIS
232
A
NE2
HIS
129
1_555
142.3
A
HIS
222
A
NE2
HIS
119
1_555
A
ZN
501
B
ZN
ZN
1_555
A
HIS
232
A
NE2
HIS
129
1_555
112.5
A
HIS
226
A
NE2
HIS
123
1_555
A
ZN
501
B
ZN
ZN
1_555
A
HIS
232
A
NE2
HIS
129
1_555
97.1
A
HOH
14
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
A
HOH
63
K
O
HOH
1_555
97.2
A
HOH
14
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
A
ASP
162
A
O
ASP
59
1_555
87.3
A
HOH
63
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
A
ASP
162
A
O
ASP
59
1_555
84.8
A
HOH
14
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
A
ASN
194
A
O
ASN
91
1_555
94.1
A
HOH
63
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
A
ASN
194
A
O
ASN
91
1_555
74.4
A
ASP
162
A
O
ASP
59
1_555
A
CA
505
F
CA
CA
1_555
A
ASN
194
A
O
ASN
91
1_555
159.1
A
HOH
14
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
A
GLY
196
A
O
GLY
93
1_555
86.4
A
HOH
63
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
A
GLY
196
A
O
GLY
93
1_555
175.2
A
ASP
162
A
O
ASP
59
1_555
A
CA
505
F
CA
CA
1_555
A
GLY
196
A
O
GLY
93
1_555
92.2
A
ASN
194
A
O
ASN
91
1_555
A
CA
505
F
CA
CA
1_555
A
GLY
196
A
O
GLY
93
1_555
108.6
A
HOH
14
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
95
1_555
167.3
A
HOH
63
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
95
1_555
95.3
A
ASP
162
A
O
ASP
59
1_555
A
CA
505
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
95
1_555
91.3
A
ASN
194
A
O
ASN
91
1_555
A
CA
505
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
95
1_555
91.6
A
GLY
196
A
O
GLY
93
1_555
A
CA
505
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
95
1_555
81.0
A
HOH
65
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
128
A
OD2
ASP
25
1_555
86.9
A
HOH
65
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
128
A
OD1
ASP
25
1_555
77.0
A
ASP
128
A
OD2
ASP
25
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
128
A
OD1
ASP
25
1_555
45.2
A
HOH
65
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
203
A
O
ASP
100
1_555
104.1
A
ASP
128
A
OD2
ASP
25
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
203
A
O
ASP
100
1_555
145.6
A
ASP
128
A
OD1
ASP
25
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
203
A
O
ASP
100
1_555
168.7
A
HOH
65
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
203
A
OD1
ASP
100
1_555
171.8
A
ASP
128
A
OD2
ASP
25
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
203
A
OD1
ASP
100
1_555
99.5
A
ASP
128
A
OD1
ASP
25
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
203
A
OD1
ASP
100
1_555
111.1
A
ASP
203
A
O
ASP
100
1_555
A
CA
503
D
CA
CA
1_555
A
ASP
203
A
OD1
ASP
100
1_555
67.8
A
HOH
65
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
205
A
O
GLU
102
1_555
85.1
A
ASP
128
A
OD2
ASP
25
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
205
A
O
GLU
102
1_555
71.7
A
ASP
128
A
OD1
ASP
25
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
205
A
O
GLU
102
1_555
114.4
A
ASP
203
A
O
ASP
100
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
205
A
O
GLU
102
1_555
76.8
A
ASP
203
A
OD1
ASP
100
1_555
A
CA
503
D
CA
CA
1_555
A
GLU
205
A
O
GLU
102
1_555
92.0
A
HIS
172
A
NE2
HIS
69
1_555
A
ZN
502
C
ZN
ZN
1_555
A
ASP
174
A
OD2
ASP
71
1_555
118.8
A
HIS
172
A
NE2
HIS
69
1_555
A
ZN
502
C
ZN
ZN
1_555
A
HIS
187
A
NE2
HIS
84
1_555
121.2
A
ASP
174
A
OD2
ASP
71
1_555
A
ZN
502
C
ZN
ZN
1_555
A
HIS
187
A
NE2
HIS
84
1_555
97.6
A
HIS
172
A
NE2
HIS
69
1_555
A
ZN
502
C
ZN
ZN
1_555
A
HIS
200
A
ND1
HIS
97
1_555
108.4
A
ASP
174
A
OD2
ASP
71
1_555
A
ZN
502
C
ZN
ZN
1_555
A
HIS
200
A
ND1
HIS
97
1_555
100.0
A
HIS
187
A
NE2
HIS
84
1_555
A
ZN
502
C
ZN
ZN
1_555
A
HIS
200
A
ND1
HIS
97
1_555
108.5
A
ASP
179
A
OD1
ASP
76
1_555
A
CA
504
E
CA
CA
1_555
A
GLY
180
A
O
GLY
77
1_555
80.4
A
ASP
179
A
OD1
ASP
76
1_555
A
CA
504
E
CA
CA
1_555
A
SER
182
A
O
SER
79
1_555
85.0
A
GLY
180
A
O
GLY
77
1_555
A
CA
504
E
CA
CA
1_555
A
SER
182
A
O
SER
79
1_555
79.1
A
ASP
179
A
OD1
ASP
76
1_555
A
CA
504
E
CA
CA
1_555
A
LEU
184
A
O
LEU
81
1_555
101.0
A
GLY
180
A
O
GLY
77
1_555
A
CA
504
E
CA
CA
1_555
A
LEU
184
A
O
LEU
81
1_555
172.1
A
SER
182
A
O
SER
79
1_555
A
CA
504
E
CA
CA
1_555
A
LEU
184
A
O
LEU
81
1_555
93.3
A
ASP
179
A
OD1
ASP
76
1_555
A
CA
504
E
CA
CA
1_555
A
ASP
202
A
OD2
ASP
99
1_555
100.3
A
GLY
180
A
O
GLY
77
1_555
A
CA
504
E
CA
CA
1_555
A
ASP
202
A
OD2
ASP
99
1_555
89.6
A
SER
182
A
O
SER
79
1_555
A
CA
504
E
CA
CA
1_555
A
ASP
202
A
OD2
ASP
99
1_555
166.6
A
LEU
184
A
O
LEU
81
1_555
A
CA
504
E
CA
CA
1_555
A
ASP
202
A
OD2
ASP
99
1_555
97.7
A
ASP
179
A
OD1
ASP
76
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
205
A
OE2
GLU
102
1_555
160.5
A
GLY
180
A
O
GLY
77
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
205
A
OE2
GLU
102
1_555
90.1
A
SER
182
A
O
SER
79
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
205
A
OE2
GLU
102
1_555
76.4
A
LEU
184
A
O
LEU
81
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
205
A
OE2
GLU
102
1_555
86.1
A
ASP
202
A
OD2
ASP
99
1_555
A
CA
504
E
CA
CA
1_555
A
GLU
205
A
OE2
GLU
102
1_555
96.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
152
A
O
ASN
49
A
N
LEU
118
A
N
LEU
15
A
N
ARG
121
A
N
ARG
18
A
O
ILE
165
A
O
ILE
62
A
N
SER
166
A
N
SER
63
A
O
PHE
201
A
O
PHE
98
A
O
HIS
200
A
O
HIS
97
A
N
HIS
187
A
N
HIS
84
A
N
THR
208
A
N
THR
105
A
O
TYR
214
A
O
TYR
111
1
A
ARG
109
80.70
-5.96
1
A
LYS
170
37.91
-135.97
1
A
ASP
174
-110.06
-164.53
1
A
SER
182
66.17
-173.01
1
A
ASN
194
47.86
-102.51
1
A
ASN
194
47.86
-104.45
1
A
SER
210
-129.36
-145.50
1
A
GLU
271
-114.24
-162.24
24.782
-2.7543
0.0000
0.0000
1.2548
-0.0000
1.4995
0.2341
0.1622
0.1654
2.430
40.916
369
8377
8127
4.54
97.02
0.65
RANDOM
1
Isotropic
THROUGHOUT
1.34
0.0
MOLECULAR REPLACEMENT
23.78
0.61
0.90
3QJ2 catalytic domain only (Chain A)
ML
FLAT BULK SOLVENT MODEL
41.386
0.370
2.430
40.916
105
1510
58
0
1347
0.008
1480
1.121
2005
21.949
525
0.083
194
0.006
262
0.3270
0.2217
2.7820
122
2389
93.00
0.2376
0.1599
3.5047
122
2627
99.00
0.1965
0.1433
40.9215
125
2742
99.00
35.49
2.43
85.1
3TVC
8412
8151
0.0
0.0
0.29
0.31
1
10.6
7.21
96.9
1.399
2.43
2.59
2.81
1231
1.29
1
6.63
87.4
0.79
6.81
85.1
24.27
436
0.07
1
6.23
98.0
0.139
4.84
6.81
19.12
717
0.129
1
6.91
99.3
0.156
3.96
4.84
19.14
893
0.145
1
7.23
99.0
0.237
3.43
3.96
14.48
1031
0.221
1
7.40
99.0
0.401
3.07
3.43
9.95
1163
0.374
1
7.45
98.9
0.648
2.80
3.07
6.67
1285
0.604
1
7.52
98.8
0.963
2.59
2.80
4.72
1395
0.898
1
7.58
98.4
data collection
DNA
phasing
PHASER
refinement
PHENIX
(phenix.refine)
data reduction
XDS
data scaling
XSCALE
Human MMP13 in complex with L-glutamate motif inhibitor
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
A
PHE
107
A
PHE
4
HELX_P
A
LEU
111
A
LEU
8
5
1
5
A
THR
130
A
THR
27
HELX_P
A
ASP
147
A
ASP
44
1
2
18
A
LEU
216
A
LEU
113
HELX_P
A
LEU
228
A
LEU
125
1
3
13
A
PRO
255
A
PRO
152
HELX_P
A
GLY
267
A
GLY
164
1
4
13
metalc
2.197
A
E3P
1
G
O7
E3P
1_555
A
ZN
501
B
ZN
ZN
1_555
metalc
2.588
A
E3P
1
G
O6
E3P
1_555
A
ZN
501
B
ZN
ZN
1_555
metalc
2.536
A
HOH
14
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
metalc
2.700
A
HOH
63
K
O
HOH
1_555
A
CA
505
F
CA
CA
1_555
metalc
2.764
A
HOH
65
K
O
HOH
1_555
A
CA
503
D
CA
CA
1_555
metalc
2.660
A
ASP
128
A
OD2
ASP
25
1_555
A
CA
503
D
CA
CA
1_555
metalc
3.037
A
ASP
128
A
OD1
ASP
25
1_555
A
CA
503
D
CA
CA
1_555
metalc
2.474
A
ASP
162
A
O
ASP
59
1_555
A
CA
505
F
CA
CA
1_555
metalc
2.080
A
HIS
172
A
NE2
HIS
69
1_555
A
ZN
502
C
ZN
ZN
1_555
metalc
2.179
A
ASP
174
A
OD2
ASP
71
1_555
A
ZN
502
C
ZN
ZN
1_555
metalc
2.418
A
ASP
179
A
OD1
ASP
76
1_555
A
CA
504
E
CA
CA
1_555
metalc
2.441
A
GLY
180
A
O
GLY
77
1_555
A
CA
504
E
CA
CA
1_555
metalc
2.473
A
SER
182
A
O
SER
79
1_555
A
CA
504
E
CA
CA
1_555
metalc
2.414
A
LEU
184
A
O
LEU
81
1_555
A
CA
504
E
CA
CA
1_555
metalc
2.178
A
HIS
187
A
NE2
HIS
84
1_555
A
ZN
502
C
ZN
ZN
1_555
metalc
2.441
A
ASN
194
A
O
ASN
91
1_555
A
CA
505
F
CA
CA
1_555
metalc
2.364
A
GLY
196
A
O
GLY
93
1_555
A
CA
505
F
CA
CA
1_555
metalc
2.608
A
ASP
198
A
OD1
ASP
95
1_555
A
CA
505
F
CA
CA
1_555
metalc
2.148
A
HIS
200
A
ND1
HIS
97
1_555
A
ZN
502
C
ZN
ZN
1_555
metalc
2.513
A
ASP
202
A
OD2
ASP
99
1_555
A
CA
504
E
CA
CA
1_555
metalc
2.665
A
ASP
203
A
O
ASP
100
1_555
A
CA
503
D
CA
CA
1_555
metalc
2.766
A
ASP
203
A
OD1
ASP
100
1_555
A
CA
503
D
CA
CA
1_555
metalc
2.764
A
GLU
205
A
O
GLU
102
1_555
A
CA
503
D
CA
CA
1_555
metalc
2.321
A
GLU
205
A
OE2
GLU
102
1_555
A
CA
504
E
CA
CA
1_555
metalc
2.107
A
HIS
222
A
NE2
HIS
119
1_555
A
ZN
501
B
ZN
ZN
1_555
metalc
2.214
A
HIS
226
A
NE2
HIS
123
1_555
A
ZN
501
B
ZN
ZN
1_555
metalc
2.060
A
HIS
232
A
NE2
HIS
129
1_555
A
ZN
501
B
ZN
ZN
1_555
HYDROLASE/HYDROLASE INHIBITOR
pseudo dipeptides, potent inhibitors, metzincin, Zinc metalloprotease, HYDROLASE-HYDROLASE INHIBITOR complex
MMP13_HUMAN
UNP
1
104
P45452
YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSG
LLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQ
SLYGPGDED
104
272
3TVC
104
272
P45452
A
1
1
169
5
2
parallel
parallel
parallel
anti-parallel
parallel
A
ASN
152
A
ASN
49
A
ARG
155
A
ARG
52
A
ASN
117
A
ASN
14
A
ILE
122
A
ILE
19
A
ILE
163
A
ILE
60
A
GLY
168
A
GLY
65
A
ALA
199
A
ALA
96
A
ASP
202
A
ASP
99
A
ALA
186
A
ALA
83
A
ALA
188
A
ALA
85
A
TRP
207
A
TRP
104
A
THR
208
A
THR
105
A
TYR
214
A
TYR
111
A
ASN
215
A
ASN
112
BINDING SITE FOR RESIDUE ZN A 501
A
ZN
501
Software
4
BINDING SITE FOR RESIDUE ZN A 502
A
ZN
502
Software
4
BINDING SITE FOR RESIDUE CA A 503
A
CA
503
Software
4
BINDING SITE FOR RESIDUE CA A 504
A
CA
504
Software
6
BINDING SITE FOR RESIDUE CA A 505
A
CA
505
Software
6
BINDING SITE FOR RESIDUE E3P A 1
A
E3P
1
Software
18
BINDING SITE FOR RESIDUE PEG A 273
A
PEG
273
Software
5
BINDING SITE FOR RESIDUE PEG A 2
A
PEG
2
Software
5
BINDING SITE FOR RESIDUE PEG A 3
A
PEG
3
Software
6
A
E3P
1
G
E3P
4
1_555
A
HIS
222
A
HIS
119
4
1_555
A
HIS
226
A
HIS
123
4
1_555
A
HIS
232
A
HIS
129
4
1_555
A
HIS
172
A
HIS
69
4
1_555
A
ASP
174
A
ASP
71
4
1_555
A
HIS
187
A
HIS
84
4
1_555
A
HIS
200
A
HIS
97
4
1_555
A
HOH
65
K
HOH
4
1_555
A
ASP
128
A
ASP
25
4
1_555
A
ASP
203
A
ASP
100
4
1_555
A
GLU
205
A
GLU
102
4
1_555
A
ASP
179
A
ASP
76
6
1_555
A
GLY
180
A
GLY
77
6
1_555
A
SER
182
A
SER
79
6
1_555
A
LEU
184
A
LEU
81
6
1_555
A
ASP
202
A
ASP
99
6
1_555
A
GLU
205
A
GLU
102
6
1_555
A
HOH
14
K
HOH
6
1_555
A
HOH
63
K
HOH
6
1_555
A
ASP
162
A
ASP
59
6
1_555
A
ASN
194
A
ASN
91
6
1_555
A
GLY
196
A
GLY
93
6
1_555
A
ASP
198
A
ASP
95
6
1_555
A
HOH
58
K
HOH
18
1_555
A
HIS
157
A
HIS
54
18
4_445
A
LEU
184
A
LEU
81
18
1_555
A
LEU
185
A
LEU
82
18
1_555
A
ALA
186
A
ALA
83
18
1_555
A
LEU
218
A
LEU
115
18
1_555
A
HIS
222
A
HIS
119
18
1_555
A
GLU
223
A
GLU
120
18
1_555
A
HIS
226
A
HIS
123
18
1_555
A
HIS
232
A
HIS
129
18
1_555
A
LEU
239
A
LEU
136
18
1_555
A
PHE
241
A
PHE
138
18
1_555
A
PRO
242
A
PRO
139
18
1_555
A
ILE
243
A
ILE
140
18
1_555
A
TYR
244
A
TYR
141
18
1_555
A
THR
245
A
THR
142
18
1_555
A
THR
247
A
THR
144
18
1_555
A
ZN
501
B
ZN
18
1_555
A
ASN
117
A
ASN
14
5
4_445
A
ASN
152
A
ASN
49
5
4_445
A
THR
154
A
THR
51
5
4_445
A
LYS
212
A
LYS
109
5
1_555
A
GLY
213
A
GLY
110
5
1_555
A
HOH
76
K
HOH
5
1_555
A
LYS
143
A
LYS
40
5
1_555
A
VAL
144
A
VAL
41
5
1_555
A
ASP
147
A
ASP
44
5
1_555
A
PHE
252
A
PHE
149
5
1_555
A
ARG
109
A
ARG
6
6
2_545
A
LYS
112
A
LYS
9
6
1_555
A
TRP
113
A
TRP
10
6
1_555
A
SER
114
A
SER
11
6
1_555
A
PRO
191
A
PRO
88
6
1_555
A
GLY
192
A
GLY
89
6
1_555
18
P 21 21 2