0.012398 0.000000 0.001435 0.000000 0.026442 0.000000 0.000000 0.000000 0.016253 0.00000 0.00000 0.00000 Rob, A. Gerlits, O. Jiang, J.S. Gan, J.H. Huang, Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 96.60 90.00 80.660 37.819 61.937 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C10 H14 N5 O6 P Se 410.182 n 2-amino-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purine-6-selenol DNA linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N O N 147 N P N 148 N O N 149 N O N 150 N O N 151 N C N 152 R C N 153 N O N 154 S C N 155 N O N 156 N C N 157 R C Y 158 N N Y 159 N C Y 160 N N Y 161 N C Y 162 N C N 163 N N Y 164 N N Y 165 N C Y 166 N N Y 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N P N 184 N O N 185 N O N 186 N O N 187 N C N 188 R C N 189 N O N 190 S C N 191 N O N 192 N C N 193 R C N 194 N N N 195 N C N 196 N O N 197 N N N 198 N C N 199 N N N 200 N C N 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N O N 217 N P N 218 N O N 219 N O N 220 N O N 221 N C N 222 R C N 223 N O N 224 S C N 225 N O N 226 N C N 227 R C N 228 N N N 229 N C N 230 N O N 231 N N N 232 N C N 233 N O N 234 N C N 235 N C N 236 N C N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N O N 253 N P N 254 N O N 255 N O N 256 N O N 257 N C N 258 R C N 259 N O N 260 S C N 261 N O N 262 R C N 263 N O N 264 R C Y 265 N N Y 266 N C Y 267 N N Y 268 N C N 269 N C N 270 N O N 271 N N N 272 N C N 273 N N N 274 N N Y 275 N C N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N O N 298 N N N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 N C N 315 N C N 316 N C N 317 N O N 318 N O N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N N N 330 N C N 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C Y 344 N C Y 345 N N Y 346 N C Y 347 N C Y 348 N N N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N O N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 S C N 368 N C N 369 N C N 370 N C N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N N N 386 S C N 387 N C N 388 N O N 389 N C N 390 N C N 391 N C N 392 N C N 393 N O N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N N N 408 S C N 409 N C N 410 N O N 411 N C N 412 N C N 413 N C N 414 N C N 415 N N N 416 N O N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 N C N 437 N C N 438 N S N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N MG N 453 N N N 454 S C N 455 N C N 456 N O N 457 N C Y 458 N C Y 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N P N 477 N O N 478 N O N 479 N O N 480 N O N 481 N N N 482 S C N 483 N C N 484 N O N 485 N C N 486 N C N 487 N C N 488 N O N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N O Y 499 N C N 500 N P N 501 N O N 502 N O N 503 N O Y 504 N N Y 505 N C Y 506 N N N 507 N N Y 508 N N Y 509 N C N 510 N SE Y 511 N C Y 512 N N Y 513 N C N 514 N C N 515 N C N 516 R C N 517 N O N 518 R C N 519 S C N 520 N O N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N N N 536 S C N 537 N C N 538 N O N 539 N C N 540 N O N 541 N O N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N N N 550 S C N 551 N C N 552 N O N 553 R C N 554 N O N 555 N C N 556 N O N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N N N 567 S C N 568 N C N 569 N O N 570 N C Y 571 N C Y 572 N C Y 573 N C Y 574 N N Y 575 N C Y 576 N C Y 577 N C Y 578 N C Y 579 N C N 580 N O N 581 N H N 582 N H N 583 N H N 584 N H N 585 N H N 586 N H N 587 N H N 588 N H N 589 N H N 590 N H N 591 N H N 592 N H N 593 N N N 594 S C N 595 N C N 596 N O N 597 N C Y 598 N C Y 599 N C Y 600 N C Y 601 N C Y 602 N C Y 603 N C N 604 N O N 605 N O N 606 N H N 607 N H N 608 N H N 609 N H N 610 N H N 611 N H N 612 N H N 613 N H N 614 N H N 615 N H N 616 N H N 617 N O N 618 N P N 619 N O N 620 N O N 621 N O N 622 N C N 623 R C N 624 N O N 625 S C N 626 N O N 627 R C N 628 N O N 629 R C N 630 N N N 631 N C N 632 N O N 633 N N N 634 N C N 635 N O N 636 N C N 637 N C N 638 N H N 639 N H N 640 N H N 641 N H N 642 N H N 643 N H N 644 N H N 645 N H N 646 N H N 647 N H N 648 N H N 649 N H N 650 N H N 651 N N N 652 S C N 653 N C N 654 N O N 655 N C N 656 N C N 657 N C N 658 N O N 659 N H N 660 N H N 661 N H N 662 N H N 663 N H N 664 N H N 665 N H N 666 N H N 667 N H N 668 N H N 669 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing Y 168 N sing Y 169 N sing Y 170 N doub N 171 N sing Y 172 N sing Y 173 N sing Y 174 N doub N 175 N sing Y 176 N doub N 177 N sing N 178 N sing Y 179 N sing Y 180 N doub N 181 N sing Y 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing Y 279 N sing Y 280 N sing Y 281 N doub N 282 N sing Y 283 N sing N 284 N sing Y 285 N doub N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing Y 352 N sing Y 353 N doub Y 354 N doub N 355 N sing Y 356 N sing N 357 N sing Y 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N doub N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N doub N 456 N sing N 457 N sing N 458 N sing N 459 N sing Y 460 N doub Y 461 N sing Y 462 N sing N 463 N sing Y 464 N doub N 465 N sing Y 466 N doub N 467 N sing Y 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N doub N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N doub N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing Y 495 N doub N 496 N sing Y 497 N sing N 498 N doub N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing Y 504 N sing Y 505 N sing Y 506 N sing Y 507 N doub N 508 N sing N 509 N sing Y 510 N doub Y 511 N sing N 512 N sing Y 513 N sing Y 514 N doub N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N doub N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N doub N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N doub N 568 N sing N 569 N sing N 570 N sing N 571 N sing Y 572 N doub Y 573 N sing Y 574 N sing N 575 N sing Y 576 N doub Y 577 N sing Y 578 N sing N 579 N sing Y 580 N sing Y 581 N doub N 582 N sing Y 583 N doub N 584 N sing Y 585 N sing N 586 N sing N 587 N sing N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N sing N 593 N sing N 594 N sing N 595 N doub N 596 N sing N 597 N sing N 598 N sing N 599 N sing Y 600 N doub Y 601 N sing Y 602 N sing N 603 N sing Y 604 N doub N 605 N sing Y 606 N doub N 607 N sing Y 608 N sing N 609 N sing N 610 N sing N 611 N sing N 612 N sing N 613 N sing N 614 N sing N 615 N doub N 616 N sing N 617 N sing N 618 N sing N 619 N sing N 620 N sing N 621 N sing N 622 N sing N 623 N sing N 624 N sing N 625 N sing N 626 N sing N 627 N sing N 628 N sing N 629 N sing N 630 N sing N 631 N sing N 632 N sing N 633 N sing N 634 N sing N 635 N sing N 636 N sing N 637 N sing N 638 N sing N 639 N doub N 640 N sing N 641 N sing N 642 N sing N 643 N doub N 644 N sing N 645 N doub N 646 N sing N 647 N sing N 648 N sing N 649 N sing N 650 N sing N 651 N sing N 652 N sing N 653 N sing N 654 N doub N 655 N sing N 656 N sing N 657 N sing N 658 N sing N 659 N sing N 660 N sing N 661 N sing N 662 N sing N 663 N sing N 664 N sing N 665 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 70 354 361 10.1107/S1399004713027922 24531469 Novel complex MAD phasing and RNase H structural insights using selenium oligonucleotides. 2014 10.2210/pdb3twh/pdb pdb_00003twh 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2006-08-12 ADSC QUANTUM 210 MIRRORS MAD M x-ray 1 0.9797 1.0 0.9800 1.0 0.9795 1.0 X12C NSLS 0.9797, 0.9800, 0.9795 SYNCHROTRON NSLS BEAMLINE X12C 15916.004 Ribonuclease H 3.1.26.4 catalytic domain D132N 1 man polymer 1875.189 RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') 1 syn polymer 1950.150 DNA (5'-D(*AP*TP*(SDG)P*TP*CP*(SDG))-3') 1 syn polymer 24.305 MAGNESIUM ION 2 syn non-polymer 94.971 PHOSPHATE ION 1 syn non-polymer 18.015 water 136 nat water RNase H no no AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK A polypeptide(L) no no UCGACA UCGACA B polyribonucleotide no yes (DA)(DT)(SDG)(DT)(DC)(SDG) ATGTCG C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample BH0863, rnhA 86665 Bacillus halodurans 866768 Escherichia coli BL21-Gold(DE3)pLysS AG PLASMID PET15B 2.38 48.25 VAPOR DIFFUSION, HANGING DROP 6.5 0.1 M MES, 12% PEG 20000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 3.113 1 B 2 C 6 8.137 B_C2:SDG6_C 1 -17.264 0.335 0.064 0.200 -8.256 1 19 B 3 C 5 1.237 B_G3:DC5_C 2 -10.139 -0.289 -0.020 -0.116 -15.372 1 20 B 4 C 4 -1.992 B_A4:DT4_C 3 -8.888 0.016 -0.061 -0.149 -13.252 1 B 5 C 3 9.978 B_C5:SDG3_C 4 -3.134 0.147 0.273 0.317 -8.577 1 20 B 6 C 2 1.717 B_A6:DT2_C 5 -8.566 -0.085 -0.045 -0.082 2.775 26.778 B B 2 3 21.017 C C 6 5 3.550 9.527 -0.999 -1.590 BB_C2G3:DC5SDG6_CC 1 -0.179 0.395 25.054 -5.903 2.110 3.010 29.847 B B 3 4 12.941 C C 5 4 3.423 6.559 0.845 -2.010 BB_G3A4:DT4DC5_CC 2 6.617 -13.055 28.387 -5.279 -0.251 3.395 32.697 B B 4 5 -3.532 C C 4 3 3.297 -1.987 0.525 -1.492 BB_A4C5:SDG3DT4_CC 3 1.157 -2.056 32.618 -2.299 -0.727 3.243 21.558 B B 5 6 1.681 C C 3 2 3.312 0.613 0.600 -1.890 BB_C5A6:DT2SDG3_CC 4 8.091 -22.164 19.990 -5.309 1.772 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Database references Data collection Database references Derived calculations 1 0 2012-10-03 1 1 2014-02-12 1 2 2014-09-24 1 3 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BACILLUS HALODURANS RNASE H CATALYTIC DOMAIN MUTANT D132N IN COMPLEX WITH 12-MER RNA/DNA HYBRID B. HALODURANS RNASE H CATALYTIC DOMAIN D132N MUTANT IN COMPLEX WITH MG2+ AND RNA/DNA HYBRID RCSB Y RCSB 2011-09-21 REL REL MG MAGNESIUM ION PO4 PHOSPHATE ION HOH water MG 401 4 MG MG 401 A MG 402 4 MG MG 402 A PO4 7 5 PO4 PO4 7 C HOH 1 6 HOH HOH 1 A HOH 2 6 HOH HOH 2 A HOH 3 6 HOH HOH 3 A HOH 4 6 HOH HOH 4 A HOH 5 6 HOH HOH 5 A HOH 6 6 HOH HOH 6 A HOH 7 6 HOH HOH 7 A HOH 8 6 HOH HOH 8 A HOH 9 6 HOH HOH 9 A HOH 10 6 HOH HOH 10 A HOH 11 6 HOH HOH 11 A HOH 12 6 HOH HOH 12 A HOH 13 6 HOH HOH 13 A HOH 14 6 HOH HOH 14 A HOH 15 6 HOH HOH 15 A HOH 16 6 HOH HOH 16 A HOH 17 6 HOH HOH 17 A HOH 18 6 HOH HOH 18 A HOH 20 6 HOH HOH 20 A HOH 21 6 HOH HOH 21 A HOH 22 6 HOH HOH 22 A HOH 24 6 HOH HOH 24 A HOH 25 6 HOH HOH 25 A HOH 28 6 HOH HOH 28 A HOH 30 6 HOH HOH 30 A HOH 31 6 HOH HOH 31 A HOH 32 6 HOH HOH 32 A HOH 33 6 HOH HOH 33 A HOH 34 6 HOH HOH 34 A HOH 35 6 HOH HOH 35 A HOH 36 6 HOH HOH 36 A HOH 37 6 HOH HOH 37 A HOH 38 6 HOH HOH 38 A HOH 39 6 HOH HOH 39 A HOH 40 6 HOH HOH 40 A HOH 41 6 HOH HOH 41 A HOH 42 6 HOH HOH 42 A HOH 44 6 HOH HOH 44 A HOH 45 6 HOH HOH 45 A HOH 46 6 HOH HOH 46 A HOH 47 6 HOH HOH 47 A HOH 48 6 HOH HOH 48 A HOH 49 6 HOH HOH 49 A HOH 50 6 HOH HOH 50 A HOH 51 6 HOH HOH 51 A HOH 53 6 HOH HOH 53 A HOH 54 6 HOH HOH 54 A HOH 55 6 HOH HOH 55 A HOH 57 6 HOH HOH 57 A HOH 58 6 HOH HOH 58 A HOH 59 6 HOH HOH 197 A HOH 60 6 HOH HOH 198 A HOH 61 6 HOH HOH 199 A HOH 62 6 HOH HOH 200 A HOH 63 6 HOH HOH 201 A HOH 64 6 HOH HOH 202 A HOH 66 6 HOH HOH 203 A HOH 67 6 HOH HOH 204 A HOH 70 6 HOH HOH 205 A HOH 71 6 HOH HOH 206 A HOH 72 6 HOH HOH 207 A HOH 73 6 HOH HOH 208 A HOH 74 6 HOH HOH 209 A HOH 75 6 HOH HOH 210 A HOH 76 6 HOH HOH 211 A HOH 78 6 HOH HOH 212 A HOH 79 6 HOH HOH 213 A HOH 80 6 HOH HOH 214 A HOH 82 6 HOH HOH 215 A HOH 83 6 HOH HOH 216 A HOH 84 6 HOH HOH 217 A HOH 85 6 HOH HOH 218 A HOH 86 6 HOH HOH 219 A HOH 87 6 HOH HOH 220 A HOH 88 6 HOH HOH 221 A HOH 90 6 HOH HOH 222 A HOH 93 6 HOH HOH 223 A HOH 94 6 HOH HOH 224 A HOH 95 6 HOH HOH 225 A HOH 96 6 HOH HOH 226 A HOH 97 6 HOH HOH 227 A HOH 98 6 HOH HOH 228 A HOH 99 6 HOH HOH 229 A HOH 100 6 HOH HOH 230 A HOH 101 6 HOH HOH 231 A HOH 102 6 HOH HOH 232 A HOH 103 6 HOH HOH 233 A HOH 104 6 HOH HOH 234 A HOH 105 6 HOH HOH 235 A HOH 106 6 HOH HOH 236 A HOH 109 6 HOH HOH 237 A HOH 110 6 HOH HOH 238 A HOH 111 6 HOH HOH 239 A HOH 113 6 HOH HOH 240 A HOH 114 6 HOH HOH 241 A HOH 116 6 HOH HOH 242 A HOH 117 6 HOH HOH 243 A HOH 118 6 HOH HOH 244 A HOH 119 6 HOH HOH 245 A HOH 120 6 HOH HOH 246 A HOH 121 6 HOH HOH 247 A HOH 122 6 HOH HOH 248 A HOH 124 6 HOH HOH 249 A HOH 125 6 HOH HOH 250 A HOH 127 6 HOH HOH 251 A HOH 128 6 HOH HOH 252 A HOH 129 6 HOH HOH 253 A HOH 130 6 HOH HOH 254 A HOH 131 6 HOH HOH 255 A HOH 133 6 HOH HOH 256 A HOH 134 6 HOH HOH 257 A HOH 135 6 HOH HOH 258 A HOH 136 6 HOH HOH 259 A HOH 19 6 HOH HOH 19 B HOH 23 6 HOH HOH 23 B HOH 29 6 HOH HOH 29 B HOH 56 6 HOH HOH 56 B HOH 65 6 HOH HOH 65 B HOH 68 6 HOH HOH 68 B HOH 69 6 HOH HOH 69 B HOH 81 6 HOH HOH 81 B HOH 89 6 HOH HOH 89 B HOH 91 6 HOH HOH 91 B HOH 92 6 HOH HOH 92 B HOH 132 6 HOH HOH 132 B HOH 26 6 HOH HOH 26 C HOH 27 6 HOH HOH 27 C HOH 43 6 HOH HOH 43 C HOH 52 6 HOH HOH 52 C HOH 77 6 HOH HOH 77 C HOH 107 6 HOH HOH 107 C HOH 108 6 HOH HOH 108 C HOH 112 6 HOH HOH 112 C HOH 115 6 HOH HOH 115 C HOH 123 6 HOH HOH 123 C HOH 126 6 HOH HOH 126 C n 1 59 A n 2 60 A GLU 61 n 3 GLU 61 A GLU 62 n 4 GLU 62 A ILE 63 n 5 ILE 63 A ILE 64 n 6 ILE 64 A TRP 65 n 7 TRP 65 A GLU 66 n 8 GLU 66 A SER 67 n 9 SER 67 A LEU 68 n 10 LEU 68 A SER 69 n 11 SER 69 A VAL 70 n 12 VAL 70 A ASP 71 n 13 ASP 71 A VAL 72 n 14 VAL 72 A GLY 73 n 15 GLY 73 A SER 74 n 16 SER 74 A GLN 75 n 17 GLN 75 A GLY 76 n 18 GLY 76 A ASN 77 n 19 ASN 77 A PRO 78 n 20 PRO 78 A GLY 79 n 21 GLY 79 A ILE 80 n 22 ILE 80 A VAL 81 n 23 VAL 81 A GLU 82 n 24 GLU 82 A TYR 83 n 25 TYR 83 A LYS 84 n 26 LYS 84 A GLY 85 n 27 GLY 85 A VAL 86 n 28 VAL 86 A ASP 87 n 29 ASP 87 A THR 88 n 30 THR 88 A LYS 89 n 31 LYS 89 A THR 90 n 32 THR 90 A GLY 91 n 33 GLY 91 A GLU 92 n 34 GLU 92 A VAL 93 n 35 VAL 93 A LEU 94 n 36 LEU 94 A PHE 95 n 37 PHE 95 A GLU 96 n 38 GLU 96 A ARG 97 n 39 ARG 97 A GLU 98 n 40 GLU 98 A PRO 99 n 41 PRO 99 A ILE 100 n 42 ILE 100 A PRO 101 n 43 PRO 101 A ILE 102 n 44 ILE 102 A GLY 103 n 45 GLY 103 A THR 104 n 46 THR 104 A ASN 105 n 47 ASN 105 A ASN 106 n 48 ASN 106 A MET 107 n 49 MET 107 A GLY 108 n 50 GLY 108 A GLU 109 n 51 GLU 109 A PHE 110 n 52 PHE 110 A LEU 111 n 53 LEU 111 A ALA 112 n 54 ALA 112 A ILE 113 n 55 ILE 113 A VAL 114 n 56 VAL 114 A HIS 115 n 57 HIS 115 A GLY 116 n 58 GLY 116 A LEU 117 n 59 LEU 117 A ARG 118 n 60 ARG 118 A TYR 119 n 61 TYR 119 A LEU 120 n 62 LEU 120 A LYS 121 n 63 LYS 121 A GLU 122 n 64 GLU 122 A ARG 123 n 65 ARG 123 A ASN 124 n 66 ASN 124 A SER 125 n 67 SER 125 A ARG 126 n 68 ARG 126 A LYS 127 n 69 LYS 127 A PRO 128 n 70 PRO 128 A ILE 129 n 71 ILE 129 A TYR 130 n 72 TYR 130 A SER 131 n 73 SER 131 A ASN 132 n 74 ASN 132 A SER 133 n 75 SER 133 A GLN 134 n 76 GLN 134 A THR 135 n 77 THR 135 A ALA 136 n 78 ALA 136 A ILE 137 n 79 ILE 137 A LYS 138 n 80 LYS 138 A TRP 139 n 81 TRP 139 A VAL 140 n 82 VAL 140 A LYS 141 n 83 LYS 141 A ASP 142 n 84 ASP 142 A LYS 143 n 85 LYS 143 A LYS 144 n 86 LYS 144 A ALA 145 n 87 ALA 145 A LYS 146 n 88 LYS 146 A SER 147 n 89 SER 147 A THR 148 n 90 THR 148 A LEU 149 n 91 LEU 149 A VAL 150 n 92 VAL 150 A ARG 151 n 93 ARG 151 A ASN 152 n 94 ASN 152 A GLU 153 n 95 GLU 153 A GLU 154 n 96 GLU 154 A THR 155 n 97 THR 155 A ALA 156 n 98 ALA 156 A LEU 157 n 99 LEU 157 A ILE 158 n 100 ILE 158 A TRP 159 n 101 TRP 159 A LYS 160 n 102 LYS 160 A LEU 161 n 103 LEU 161 A VAL 162 n 104 VAL 162 A ASP 163 n 105 ASP 163 A GLU 164 n 106 GLU 164 A ALA 165 n 107 ALA 165 A GLU 166 n 108 GLU 166 A GLU 167 n 109 GLU 167 A TRP 168 n 110 TRP 168 A LEU 169 n 111 LEU 169 A ASN 170 n 112 ASN 170 A THR 171 n 113 THR 171 A HIS 172 n 114 HIS 172 A THR 173 n 115 THR 173 A TYR 174 n 116 TYR 174 A GLU 175 n 117 GLU 175 A THR 176 n 118 THR 176 A PRO 177 n 119 PRO 177 A ILE 178 n 120 ILE 178 A LEU 179 n 121 LEU 179 A LYS 180 n 122 LYS 180 A TRP 181 n 123 TRP 181 A GLN 182 n 124 GLN 182 A THR 183 n 125 THR 183 A ASP 184 n 126 ASP 184 A LYS 185 n 127 LYS 185 A TRP 186 n 128 TRP 186 A GLY 187 n 129 GLY 187 A GLU 188 n 130 GLU 188 A ILE 189 n 131 ILE 189 A LYS 190 n 132 LYS 190 A ALA 191 n 133 ALA 191 A ASP 192 n 134 ASP 192 A TYR 193 n 135 TYR 193 A GLY 194 n 136 GLY 194 A n 137 195 A n 138 196 A U 1 n 1 U 1 B C 2 n 2 C 2 B G 3 n 3 G 3 B A 3 n 4 A 4 B C 5 n 5 C 5 B A 6 n 6 A 6 B DA 1 n 1 DA 1 C DT 2 n 2 DT 2 C SDG 3 n 3 SDG 3 C DT 4 n 4 DT 4 C DC 5 n 5 DC 5 C SDG 6 n 6 SDG 6 C author_and_software_defined_assembly PISA 3 trimeric 2570 -37 8410 A HOH 36 G O HOH 1_555 A MG 401 D MG MG 1_555 A HOH 55 G O HOH 1_555 168.5 A HOH 36 G O HOH 1_555 A MG 401 D MG MG 1_555 A ASP 71 A OD2 ASP 13 1_555 85.9 A HOH 55 G O HOH 1_555 A MG 401 D MG MG 1_555 A ASP 71 A OD2 ASP 13 1_555 98.5 A HOH 36 G O HOH 1_555 A MG 401 D MG MG 1_555 A ASP 192 A OD2 ASP 134 1_555 89.6 A HOH 55 G O HOH 1_555 A MG 401 D MG MG 1_555 A ASP 192 A OD2 ASP 134 1_555 79.0 A ASP 71 A OD2 ASP 13 1_555 A MG 401 D MG MG 1_555 A ASP 192 A OD2 ASP 134 1_555 103.7 A HOH 36 G O HOH 1_555 A MG 401 D MG MG 1_555 B C 5 B OP1 C 5 1_555 100.1 A HOH 55 G O HOH 1_555 A MG 401 D MG MG 1_555 B C 5 B OP1 C 5 1_555 90.6 A ASP 71 A OD2 ASP 13 1_555 A MG 401 D MG MG 1_555 B C 5 B OP1 C 5 1_555 88.6 A ASP 192 A OD2 ASP 134 1_555 A MG 401 D MG MG 1_555 B C 5 B OP1 C 5 1_555 164.9 A HOH 36 G O HOH 1_555 A MG 401 D MG MG 1_555 B HOH 56 H O HOH 1_555 86.7 A HOH 55 G O HOH 1_555 A MG 401 D MG MG 1_555 B HOH 56 H O HOH 1_555 89.3 A ASP 71 A OD2 ASP 13 1_555 A MG 401 D MG MG 1_555 B HOH 56 H O HOH 1_555 172.0 A ASP 192 A OD2 ASP 134 1_555 A MG 401 D MG MG 1_555 B HOH 56 H O HOH 1_555 79.4 B C 5 B OP1 C 5 1_555 A MG 401 D MG MG 1_555 B HOH 56 H O HOH 1_555 89.6 A ASP 71 A OD1 ASP 13 1_555 A MG 402 E MG MG 1_555 A GLU 109 A OE2 GLU 51 1_555 125.5 A ASP 71 A OD1 ASP 13 1_555 A MG 402 E MG MG 1_555 A GLU 109 A OE1 GLU 51 1_555 87.8 A GLU 109 A OE2 GLU 51 1_555 A MG 402 E MG MG 1_555 A GLU 109 A OE1 GLU 51 1_555 53.0 A ASP 71 A OD1 ASP 13 1_555 A MG 402 E MG MG 1_555 A ASN 132 A OD1 ASN 74 1_555 127.7 A GLU 109 A OE2 GLU 51 1_555 A MG 402 E MG MG 1_555 A ASN 132 A OD1 ASN 74 1_555 98.5 A GLU 109 A OE1 GLU 51 1_555 A MG 402 E MG MG 1_555 A ASN 132 A OD1 ASN 74 1_555 100.4 A ASP 71 A OD1 ASP 13 1_555 A MG 402 E MG MG 1_555 B A 4 B O3' A 4 1_555 128.7 A GLU 109 A OE2 GLU 51 1_555 A MG 402 E MG MG 1_555 B A 4 B O3' A 4 1_555 82.7 A GLU 109 A OE1 GLU 51 1_555 A MG 402 E MG MG 1_555 B A 4 B O3' A 4 1_555 135.3 A ASN 132 A OD1 ASN 74 1_555 A MG 402 E MG MG 1_555 B A 4 B O3' A 4 1_555 78.2 A ASP 71 A OD1 ASP 13 1_555 A MG 402 E MG MG 1_555 B C 5 B OP1 C 5 1_555 76.5 A GLU 109 A OE2 GLU 51 1_555 A MG 402 E MG MG 1_555 B C 5 B OP1 C 5 1_555 120.9 A GLU 109 A OE1 GLU 51 1_555 A MG 402 E MG MG 1_555 B C 5 B OP1 C 5 1_555 153.4 A ASN 132 A OD1 ASN 74 1_555 A MG 402 E MG MG 1_555 B C 5 B OP1 C 5 1_555 106.2 B A 4 B O3' A 4 1_555 A MG 402 E MG MG 1_555 B C 5 B OP1 C 5 1_555 52.6 C SDG 3 C SDG 3 DG C SDG 6 C SDG 6 DG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 100 A O ILE 42 A N VAL 81 A N VAL 23 A O GLU 82 A O GLU 24 A N GLY 73 A N GLY 15 A N LEU 68 A N LEU 10 A O TYR 130 A O TYR 72 A N ILE 129 A N ILE 71 A O LEU 179 A O LEU 121 1 A HOH 210 G HOH 1 A ALA 59 A ALA 1 1 Y 1 A LYS 60 A LYS 2 1 Y 1 A ARG 195 A ARG 137 1 Y 1 A LYS 196 A LYS 138 1 Y 1 -3.79 0.60 121.00 117.21 A A A CB CG CD2 TYR TYR TYR 83 83 83 N 1 5.72 0.90 118.30 124.02 A A A CB CG OD1 ASP ASP ASP 142 142 142 N 1 6.18 0.90 118.30 124.48 A A A CB CG OD1 ASP ASP ASP 184 184 184 N 1 7.03 1.10 110.50 117.53 B B B O3' P OP2 C G G 2 3 3 Y 1 -7.87 0.90 105.70 97.83 B B B O5' P OP2 G G G 3 3 3 N 1 -6.12 0.80 109.40 103.28 B B B O5' C5' C4' A A A 4 4 4 N 1 -6.27 0.70 101.30 95.03 B B B C3' C2' C1' A A A 4 4 4 N 1 -4.30 0.50 129.30 125.00 B B B N1 C2 N3 A A A 4 4 4 N 1 3.32 0.50 110.60 113.92 B B B C2 N3 C4 A A A 4 4 4 N 1 -6.11 0.70 109.70 103.59 B B B C1' O4' C4' C C C 5 5 5 N 1 4.12 0.50 121.00 125.12 B B B C5 C6 N1 C C C 5 5 5 N 1 3.05 0.50 106.80 109.85 C C C O4' C1' C2' DA DA DA 1 1 1 N 1 6.91 0.60 118.60 125.51 C C C C6 N1 C2 DA DA DA 1 1 1 N 1 -4.63 0.50 129.30 124.67 C C C N1 C2 N3 DA DA DA 1 1 1 N 1 4.19 0.50 110.70 114.89 C C C C4 C5 N7 DA DA DA 1 1 1 N 1 -3.30 0.50 103.90 100.60 C C C C5 N7 C8 DA DA DA 1 1 1 N 1 -3.02 0.40 105.80 102.78 C C C N9 C4 C5 DA DA DA 1 1 1 N 1 7.84 0.60 118.60 126.44 C C C N1 C6 N6 DA DA DA 1 1 1 N 1 -5.45 0.80 123.70 118.25 C C C C5 C6 N6 DA DA DA 1 1 1 N 1 -4.60 0.60 122.30 117.70 C C C N3 C2 O2 DT DT DT 2 2 2 N 1 9.70 1.50 119.60 129.30 C C C OP1 P OP2 DT DT DT 4 4 4 N 1 -10.70 0.90 105.70 95.00 C C C O5' P OP2 DT DT DT 4 4 4 N 1 4.84 0.30 108.30 113.14 C C C O4' C1' N1 DT DT DT 4 4 4 N 1 -4.45 0.60 115.20 110.75 C C C N3 C4 C5 DT DT DT 4 4 4 N 1 4.31 0.60 118.00 122.31 C C C C4 C5 C6 DT DT DT 4 4 4 N 1 -3.95 0.60 119.90 115.95 C C C N3 C4 O4 DT DT DT 4 4 4 N 1 8.38 0.70 124.90 133.28 C C C C5 C4 O4 DT DT DT 4 4 4 N 1 -7.50 0.60 122.90 115.40 C C C C6 C5 C7 DT DT DT 4 4 4 N 1 -5.46 0.80 109.40 103.94 C C C O5' C5' C4' DC DC DC 5 5 5 N 1 -3.49 0.40 104.50 101.01 C C C O4' C4' C3' DC DC DC 5 5 5 N 1 A A CD OE2 GLU GLU 109 109 0.080 0.011 1.252 1.332 N 1 B B O3' C3' G G 3 3 0.096 0.012 1.427 1.523 N 1 B B N7 C8 G G 3 3 0.045 0.006 1.305 1.350 N 1 C C P O5' DT DT 4 4 0.091 0.010 1.593 1.684 N 1 C C C4 O4 DT DT 4 4 0.074 0.009 1.228 1.302 N 1 C C C5 C7 DT DT 4 4 0.053 0.006 1.496 1.549 N 1 C C C5' C4' DC DC 5 5 0.067 0.007 1.512 1.579 N 23.980 0.67 0.00 -0.27 -0.01 0.00 -0.72 0.963 0.946 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.20782 0.17541 0.17714 1.79 40 902 16958 16704 5.1 98.45 2.343 0.075 RANDOM 1 THROUGHOUT MAD 0.114 0.80 0.80 1.40 MAXIMUM LIKELIHOOD MASK 1.79 40 136 1476 6 245 1089 0.026 0.022 1435 2.372 2.174 2003 5.910 5.000 145 37.030 25.179 56 16.588 15.000 221 21.266 15.000 6 0.178 0.200 223 0.012 0.021 997 1.325 1.500 682 2.246 2.000 1114 3.530 3.000 753 5.118 4.500 883 0.340 0.273 1.832 56 1170 20 94.82 1.79 61.53 3TWH 17472 17227 0 0 0.06 1 15.3 7.3 98.6 0.278 1.79 1.86 1707 1 6.3 98.6 data collection ADSC Quantum phasing SHELXS refinement REFMAC 5.5.0109 data reduction HKL-2000 data scaling HKL-2000 Selenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N Mutant 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 6 N N 6 N N 6 N N A THR 104 A THR 46 HELX_P A ARG 123 A ARG 65 1 1 20 A SER 133 A SER 75 HELX_P A LYS 143 A LYS 85 1 2 11 A THR 155 A THR 97 HELX_P A ASN 170 A ASN 112 1 3 16 A GLN 182 A GLN 124 HELX_P A GLY 187 A GLY 129 1 4 6 covale 1.624 both C DT 2 C O3' DT 2 1_555 C SDG 3 C P SDG 3 1_555 covale 1.629 both C SDG 3 C O3' SDG 3 1_555 C DT 4 C P DT 4 1_555 covale 1.602 both C DC 5 C O3' DC 5 1_555 C SDG 6 C P SDG 6 1_555 covale 1.617 one C SDG 6 C O3' SDG 6 1_555 C PO4 7 F P PO4 1_555 metalc 2.205 A HOH 36 G O HOH 1_555 A MG 401 D MG MG 1_555 metalc 2.256 A HOH 55 G O HOH 1_555 A MG 401 D MG MG 1_555 metalc 2.270 A ASP 71 A OD2 ASP 13 1_555 A MG 401 D MG MG 1_555 metalc 2.107 A ASP 71 A OD1 ASP 13 1_555 A MG 402 E MG MG 1_555 metalc 2.020 A GLU 109 A OE2 GLU 51 1_555 A MG 402 E MG MG 1_555 metalc 2.922 A GLU 109 A OE1 GLU 51 1_555 A MG 402 E MG MG 1_555 metalc 2.379 A ASN 132 A OD1 ASN 74 1_555 A MG 402 E MG MG 1_555 metalc 2.167 A ASP 192 A OD2 ASP 134 1_555 A MG 401 D MG MG 1_555 metalc 2.276 A MG 401 D MG MG 1_555 B C 5 B OP1 C 5 1_555 metalc 2.395 A MG 401 D MG MG 1_555 B HOH 56 H O HOH 1_555 metalc 2.766 A MG 402 E MG MG 1_555 B A 4 B O3' A 4 1_555 metalc 2.657 A MG 402 E MG MG 1_555 B C 5 B OP1 C 5 1_555 hydrog C-SDG PAIR B C 2 B O2 C 2 1_555 C SDG 6 C N2 SDG 6 1_555 hydrog WATSON-CRICK B G 3 B N1 G 3 1_555 C DC 5 C N3 DC 5 1_555 hydrog WATSON-CRICK B G 3 B N2 G 3 1_555 C DC 5 C O2 DC 5 1_555 hydrog WATSON-CRICK B G 3 B O6 G 3 1_555 C DC 5 C N4 DC 5 1_555 hydrog WATSON-CRICK B A 4 B N1 A 4 1_555 C DT 4 C N3 DT 4 1_555 hydrog WATSON-CRICK B A 4 B N6 A 4 1_555 C DT 4 C O4 DT 4 1_555 hydrog C-SDG PAIR B C 5 B O2 C 5 1_555 C SDG 3 C N2 SDG 3 1_555 hydrog WATSON-CRICK B A 6 B N1 A 6 1_555 C DT 2 C N3 DT 2 1_555 hydrog WATSON-CRICK B A 6 B N6 A 6 1_555 C DT 2 C O4 DT 2 1_555 Hydrolase/RNA/DNA SELENIUM-DNA/RNA, RNASE H, ENDONUCLEASE, HYDROLASE, MAGNESIUM, MANGANESE, Metal-binding, SELENIUM-modification, Hydrolase-RNA-DNA complex A ASN 77 A ASN 19 1 A PRO 78 A PRO 20 2.91 RNH1_BACHD UNP 1 59 Q9KEI9 AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK 3TWH PDB 2 3TWH 3TWH PDB 3 3TWH 59 196 3TWH 59 196 Q9KEI9 A 1 1 138 1 6 3TWH 1 6 3TWH B 2 1 6 1 6 3TWH 1 6 3TWH C 3 1 6 1 ASP engineered mutation ASN 132 3TWH A Q9KEI9 UNP 132 74 5 anti-parallel anti-parallel parallel parallel A VAL 93 A VAL 35 A GLY 103 A GLY 45 A GLY 79 A GLY 21 A ASP 87 A ASP 29 A LEU 68 A LEU 10 A GLN 75 A GLN 17 A ILE 129 A ILE 71 A SER 131 A SER 73 A ILE 178 A ILE 120 A LYS 180 A LYS 122 BINDING SITE FOR RESIDUE MG A 401 A MG 401 Software 6 BINDING SITE FOR RESIDUE MG A 402 A MG 402 Software 5 BINDING SITE FOR RESIDUE PO4 C 7 C PO4 7 Software 6 A HOH 36 G HOH 6 1_555 A HOH 55 G HOH 6 1_555 A ASP 71 A ASP 13 6 1_555 A ASP 192 A ASP 134 6 1_555 B C 5 B C 5 6 1_555 B HOH 56 H HOH 6 1_555 A ASP 71 A ASP 13 5 1_555 A GLU 109 A GLU 51 5 1_555 A ASN 132 A ASN 74 5 1_555 B A 4 B A 4 5 1_555 B C 5 B C 5 5 1_555 A TRP 139 A TRP 81 6 1_555 A LYS 146 A LYS 88 6 1_555 C DA 1 C DA 1 6 4_556 C SDG 6 C SDG 6 6 1_555 C HOH 77 I HOH 6 1_555 C HOH 107 I HOH 6 1_555 5 C 1 2 1