0.014866 0.000000 0.000000 -0.000000 0.012118 0.000000 0.000000 -0.000000 0.011247 0.00000 0.00000 0.00000 Akerboom, J. Looger, L.L. Schreiter, E.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 67.269 82.523 88.910 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C16 H17 N3 O4 S 347.389 n {(4Z)-4-(4-hydroxybenzylidene)-2-[3-(methylthio)propanimidoyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid CHROMOPHORE (MET-TYR-GLY) L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 N C N 252 N S N 253 N C N 254 N C N 255 N C N 256 N C N 257 N N N 258 N O Y 259 N C Y 260 N C Y 261 N C Y 262 N C Y 263 N C Y 264 N C N 265 N C N 266 N C N 267 N C N 268 N O N 269 N N N 270 N C N 271 N C N 272 N O N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 N C N 319 N C N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N O N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N S N 346 N O N 347 N O N 348 N O N 349 N O N 350 N N N 351 S C N 352 N C N 353 N O N 354 R C N 355 N O N 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N N N 368 S C N 369 N C N 370 N O N 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N N Y 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C N 405 N O N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C N 423 N C N 424 N C N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing Y 249 N doub Y 250 N sing N 251 N sing N 252 N sing Y 253 N sing Y 254 N doub N 255 N doub N 256 N sing N 257 N sing Y 258 N sing N 259 N sing N 260 N doub Y 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 Z sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing Y 290 N doub Y 291 N sing Y 292 N sing N 293 N sing Y 294 N doub N 295 N sing Y 296 N doub N 297 N sing Y 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing Y 363 N doub Y 364 N sing Y 365 N sing N 366 N sing Y 367 N doub Y 368 N sing Y 369 N sing N 370 N sing Y 371 N sing Y 372 N doub N 373 N sing Y 374 N doub N 375 N sing Y 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing Y 391 N doub Y 392 N sing Y 393 N sing N 394 N sing Y 395 N doub N 396 N sing Y 397 N doub N 398 N sing Y 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N doub N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing CH Front Mol Neurosci 1662-5099 6 2 2 10.3389/fnmol.2013.00002 23459413 Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics. 2013 10.2210/pdb3u0n/pdb pdb_00003u0n 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2010-04-02 RAYONIX MX225HE Diamond 111 SINGLE WAVELENGTH M x-ray 1 0.9793 1.0 31-ID APS 0.9793 SYNCHROTRON APS BEAMLINE 31-ID 25807.447 mRuby D196S 1 man polymer 96.063 SULFATE ION 2 syn non-polymer 18.015 water 195 nat water GFP-like chromoprotein no yes DRWGSMNSLIKENMRMKVVLEGSVNGHQFKCTGEGEGNPYMGTQTMRIKVIEGGPLPFAFDILATSF(NRQ)SRTFIKYP KGIPDFFKQSFPEGFTWERVTRYEDGGVITVMQDTSLEDGCLVYHAQVRGVNFPSNGAVMQKKTKGWEPNTEMMYPADGG LRGYTHMALKVDGGGHLSCSFVTTYRSKKTVGNIKMPGIHAVSHRLERLEESDNEMFVVQREHAVAKFAGLGGG DRWGSMNSLIKENMRMKVVLEGSVNGHQFKCTGEGEGNPYMGTQTMRIKVIEGGPLPFAFDILATSFMYGSRTFIKYPKG IPDFFKQSFPEGFTWERVTRYEDGGVITVMQDTSLEDGCLVYHAQVRGVNFPSNGAVMQKKTKGWEPNTEMMYPADGGLR GYTHMALKVDGGGHLSCSFVTTYRSKKTVGNIKMPGIHAVSHRLERLEESDNEMFVVQREHAVAKFAGLGGG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bubble-tip anemone sample 6118 Entacmaea quadricolor 562 Escherichia coli 1 2.39 48.55 VAPOR DIFFUSION, SITTING DROP 8.0 2.0 M Ammonium sulfate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Database references Data collection Database references Derived calculations Refinement description Data collection 1 0 2012-10-03 1 1 2014-01-29 1 2 2023-09-13 1 3 2023-12-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 RCSB Y RCSB 2011-09-28 REL REL SO4 SULFATE ION HOH water MRUBY IS THE ENGINEERED VARIANT OF THE RED FLUORESCENT PROTEIN, EQFP611 1UIS PDB entry 1UIS PDB experimental model SO4 1 2 SO4 SO4 228 A SO4 2 2 SO4 SO4 229 A HOH 63 3 HOH HOH 63 A HOH 65 3 HOH HOH 65 A HOH 1 3 HOH HOH 230 A HOH 2 3 HOH HOH 231 A HOH 3 3 HOH HOH 232 A HOH 4 3 HOH HOH 233 A HOH 5 3 HOH HOH 234 A HOH 6 3 HOH HOH 235 A HOH 7 3 HOH HOH 236 A HOH 8 3 HOH HOH 237 A HOH 9 3 HOH HOH 238 A HOH 10 3 HOH HOH 239 A HOH 11 3 HOH HOH 240 A HOH 12 3 HOH HOH 241 A HOH 13 3 HOH HOH 242 A HOH 14 3 HOH HOH 243 A HOH 15 3 HOH HOH 244 A HOH 16 3 HOH HOH 245 A HOH 17 3 HOH HOH 246 A HOH 18 3 HOH HOH 247 A HOH 20 3 HOH HOH 248 A HOH 21 3 HOH HOH 249 A HOH 22 3 HOH HOH 250 A HOH 23 3 HOH HOH 251 A HOH 24 3 HOH HOH 252 A HOH 25 3 HOH HOH 253 A HOH 26 3 HOH HOH 254 A HOH 27 3 HOH HOH 255 A HOH 28 3 HOH HOH 256 A HOH 29 3 HOH HOH 257 A HOH 30 3 HOH HOH 258 A HOH 31 3 HOH HOH 259 A HOH 32 3 HOH HOH 260 A HOH 33 3 HOH HOH 261 A HOH 34 3 HOH HOH 262 A HOH 37 3 HOH HOH 263 A HOH 38 3 HOH HOH 264 A HOH 39 3 HOH HOH 265 A HOH 40 3 HOH HOH 266 A HOH 41 3 HOH HOH 267 A HOH 42 3 HOH HOH 268 A HOH 43 3 HOH HOH 269 A HOH 44 3 HOH HOH 270 A HOH 45 3 HOH HOH 271 A HOH 46 3 HOH HOH 272 A HOH 47 3 HOH HOH 273 A HOH 48 3 HOH HOH 274 A HOH 49 3 HOH HOH 275 A HOH 50 3 HOH HOH 276 A HOH 51 3 HOH HOH 277 A HOH 52 3 HOH HOH 278 A HOH 53 3 HOH HOH 279 A HOH 54 3 HOH HOH 280 A HOH 55 3 HOH HOH 281 A HOH 56 3 HOH HOH 282 A HOH 57 3 HOH HOH 283 A HOH 58 3 HOH HOH 284 A HOH 59 3 HOH HOH 285 A HOH 60 3 HOH HOH 286 A HOH 61 3 HOH HOH 287 A HOH 62 3 HOH HOH 288 A HOH 64 3 HOH HOH 289 A HOH 66 3 HOH HOH 290 A HOH 67 3 HOH HOH 291 A HOH 68 3 HOH HOH 292 A HOH 70 3 HOH HOH 293 A HOH 71 3 HOH HOH 294 A HOH 72 3 HOH HOH 295 A HOH 73 3 HOH HOH 296 A HOH 74 3 HOH HOH 297 A HOH 75 3 HOH HOH 298 A HOH 76 3 HOH HOH 299 A HOH 77 3 HOH HOH 300 A HOH 78 3 HOH HOH 301 A HOH 79 3 HOH HOH 302 A HOH 80 3 HOH HOH 303 A HOH 81 3 HOH HOH 304 A HOH 82 3 HOH HOH 305 A HOH 83 3 HOH HOH 306 A HOH 84 3 HOH HOH 307 A HOH 85 3 HOH HOH 308 A HOH 86 3 HOH HOH 309 A HOH 87 3 HOH HOH 310 A HOH 88 3 HOH HOH 311 A HOH 89 3 HOH HOH 312 A HOH 90 3 HOH HOH 313 A HOH 91 3 HOH HOH 314 A HOH 92 3 HOH HOH 315 A HOH 93 3 HOH HOH 316 A HOH 94 3 HOH HOH 317 A HOH 95 3 HOH HOH 318 A HOH 96 3 HOH HOH 319 A HOH 97 3 HOH HOH 320 A HOH 98 3 HOH HOH 321 A HOH 99 3 HOH HOH 322 A HOH 100 3 HOH HOH 323 A HOH 101 3 HOH HOH 324 A HOH 102 3 HOH HOH 325 A HOH 103 3 HOH HOH 326 A HOH 104 3 HOH HOH 327 A HOH 105 3 HOH HOH 328 A HOH 106 3 HOH HOH 329 A HOH 107 3 HOH HOH 330 A HOH 108 3 HOH HOH 331 A HOH 109 3 HOH HOH 332 A HOH 110 3 HOH HOH 333 A HOH 111 3 HOH HOH 334 A HOH 112 3 HOH HOH 335 A HOH 113 3 HOH HOH 336 A HOH 114 3 HOH HOH 337 A HOH 115 3 HOH HOH 338 A HOH 116 3 HOH HOH 339 A HOH 117 3 HOH HOH 340 A HOH 118 3 HOH HOH 341 A HOH 119 3 HOH HOH 342 A HOH 120 3 HOH HOH 343 A HOH 121 3 HOH HOH 344 A HOH 122 3 HOH HOH 345 A HOH 123 3 HOH HOH 346 A HOH 124 3 HOH HOH 347 A HOH 125 3 HOH HOH 348 A HOH 126 3 HOH HOH 349 A HOH 127 3 HOH HOH 350 A HOH 128 3 HOH HOH 351 A HOH 129 3 HOH HOH 352 A HOH 130 3 HOH HOH 353 A HOH 131 3 HOH HOH 354 A HOH 132 3 HOH HOH 355 A HOH 133 3 HOH HOH 356 A HOH 134 3 HOH HOH 357 A HOH 135 3 HOH HOH 358 A HOH 136 3 HOH HOH 359 A HOH 137 3 HOH HOH 360 A HOH 138 3 HOH HOH 361 A HOH 139 3 HOH HOH 362 A HOH 140 3 HOH HOH 363 A HOH 141 3 HOH HOH 364 A HOH 142 3 HOH HOH 365 A HOH 143 3 HOH HOH 366 A HOH 144 3 HOH HOH 367 A HOH 145 3 HOH HOH 368 A HOH 146 3 HOH HOH 369 A HOH 147 3 HOH HOH 370 A HOH 148 3 HOH HOH 371 A HOH 149 3 HOH HOH 372 A HOH 150 3 HOH HOH 373 A HOH 151 3 HOH HOH 374 A HOH 152 3 HOH HOH 375 A HOH 153 3 HOH HOH 376 A HOH 154 3 HOH HOH 377 A HOH 155 3 HOH HOH 378 A HOH 156 3 HOH HOH 379 A HOH 157 3 HOH HOH 380 A HOH 158 3 HOH HOH 381 A HOH 159 3 HOH HOH 382 A HOH 160 3 HOH HOH 383 A HOH 161 3 HOH HOH 384 A HOH 162 3 HOH HOH 385 A HOH 163 3 HOH HOH 386 A HOH 164 3 HOH HOH 387 A HOH 165 3 HOH HOH 388 A HOH 166 3 HOH HOH 389 A HOH 167 3 HOH HOH 390 A HOH 168 3 HOH HOH 391 A HOH 169 3 HOH HOH 392 A HOH 170 3 HOH HOH 393 A HOH 171 3 HOH HOH 394 A HOH 172 3 HOH HOH 395 A HOH 173 3 HOH HOH 396 A HOH 174 3 HOH HOH 397 A HOH 175 3 HOH HOH 398 A HOH 176 3 HOH HOH 399 A HOH 177 3 HOH HOH 400 A HOH 178 3 HOH HOH 401 A HOH 179 3 HOH HOH 402 A HOH 180 3 HOH HOH 403 A HOH 181 3 HOH HOH 404 A HOH 182 3 HOH HOH 405 A HOH 183 3 HOH HOH 406 A HOH 184 3 HOH HOH 407 A HOH 185 3 HOH HOH 408 A HOH 186 3 HOH HOH 409 A HOH 187 3 HOH HOH 410 A HOH 188 3 HOH HOH 411 A HOH 189 3 HOH HOH 412 A HOH 190 3 HOH HOH 413 A HOH 191 3 HOH HOH 414 A HOH 192 3 HOH HOH 415 A HOH 193 3 HOH HOH 416 A HOH 194 3 HOH HOH 417 A HOH 195 3 HOH HOH 418 A HOH 196 3 HOH HOH 419 A HOH 197 3 HOH HOH 420 A HOH 198 3 HOH HOH 421 A HOH 199 3 HOH HOH 422 A n 1 -4 A n 2 -3 A n 3 -2 A n 4 -1 A n 5 0 A n 6 1 A n 7 2 A n 8 3 A LEU 4 n 9 LEU 4 A ILE 5 n 10 ILE 5 A LYS 6 n 11 LYS 6 A GLU 7 n 12 GLU 7 A ASN 8 n 13 ASN 8 A MET 9 n 14 MET 9 A ARG 10 n 15 ARG 10 A MET 11 n 16 MET 11 A LYS 12 n 17 LYS 12 A VAL 13 n 18 VAL 13 A VAL 14 n 19 VAL 14 A LEU 15 n 20 LEU 15 A GLU 16 n 21 GLU 16 A GLY 17 n 22 GLY 17 A SER 18 n 23 SER 18 A VAL 19 n 24 VAL 19 A ASN 20 n 25 ASN 20 A GLY 21 n 26 GLY 21 A HIS 22 n 27 HIS 22 A GLN 23 n 28 GLN 23 A PHE 24 n 29 PHE 24 A LYS 25 n 30 LYS 25 A CYS 26 n 31 CYS 26 A THR 27 n 32 THR 27 A GLY 28 n 33 GLY 28 A GLU 29 n 34 GLU 29 A GLY 30 n 35 GLY 30 A GLU 31 n 36 GLU 31 A GLY 32 n 37 GLY 32 A ASN 33 n 38 ASN 33 A PRO 34 n 39 PRO 34 A TYR 35 n 40 TYR 35 A MET 36 n 41 MET 36 A GLY 37 n 42 GLY 37 A THR 38 n 43 THR 38 A GLN 39 n 44 GLN 39 A THR 40 n 45 THR 40 A MET 41 n 46 MET 41 A ARG 42 n 47 ARG 42 A ILE 43 n 48 ILE 43 A LYS 44 n 49 LYS 44 A VAL 45 n 50 VAL 45 A ILE 46 n 51 ILE 46 A GLU 47 n 52 GLU 47 A GLY 48 n 53 GLY 48 A GLY 49 n 54 GLY 49 A PRO 50 n 55 PRO 50 A LEU 51 n 56 LEU 51 A PRO 52 n 57 PRO 52 A PHE 53 n 58 PHE 53 A ALA 54 n 59 ALA 54 A PHE 55 n 60 PHE 55 A ASP 56 n 61 ASP 56 A ILE 57 n 62 ILE 57 A LEU 58 n 63 LEU 58 A ALA 59 n 64 ALA 59 A THR 60 n 65 THR 60 A SER 61 n 66 SER 61 A PHE 62 n 67 PHE 62 A NRQ 64 n 68 NRQ 64 A SER 66 n 69 SER 66 A ARG 67 n 70 ARG 67 A THR 68 n 71 THR 68 A PHE 69 n 72 PHE 69 A ILE 70 n 73 ILE 70 A LYS 71 n 74 LYS 71 A TYR 72 n 75 TYR 72 A PRO 73 n 76 PRO 73 A LYS 74 n 77 LYS 74 A GLY 75 n 78 GLY 75 A ILE 76 n 79 ILE 76 A PRO 77 n 80 PRO 77 A ASP 78 n 81 ASP 78 A PHE 79 n 82 PHE 79 A PHE 80 n 83 PHE 80 A LYS 81 n 84 LYS 81 A GLN 82 n 85 GLN 82 A SER 83 n 86 SER 83 A PHE 84 n 87 PHE 84 A PRO 85 n 88 PRO 85 A GLU 86 n 89 GLU 86 A GLY 87 n 90 GLY 87 A PHE 88 n 91 PHE 88 A THR 89 n 92 THR 89 A TRP 90 n 93 TRP 90 A GLU 91 n 94 GLU 91 A ARG 92 n 95 ARG 92 A VAL 93 n 96 VAL 93 A THR 94 n 97 THR 94 A ARG 95 n 98 ARG 95 A TYR 96 n 99 TYR 96 A GLU 97 n 100 GLU 97 A ASP 98 n 101 ASP 98 A GLY 99 n 102 GLY 99 A GLY 100 n 103 GLY 100 A VAL 101 n 104 VAL 101 A ILE 102 n 105 ILE 102 A THR 103 n 106 THR 103 A VAL 104 n 107 VAL 104 A MET 105 n 108 MET 105 A GLN 106 n 109 GLN 106 A ASP 107 n 110 ASP 107 A THR 108 n 111 THR 108 A SER 109 n 112 SER 109 A LEU 110 n 113 LEU 110 A GLU 111 n 114 GLU 111 A ASP 112 n 115 ASP 112 A GLY 113 n 116 GLY 113 A CYS 114 n 117 CYS 114 A LEU 115 n 118 LEU 115 A VAL 116 n 119 VAL 116 A TYR 117 n 120 TYR 117 A HIS 118 n 121 HIS 118 A ALA 119 n 122 ALA 119 A GLN 120 n 123 GLN 120 A VAL 121 n 124 VAL 121 A ARG 122 n 125 ARG 122 A GLY 123 n 126 GLY 123 A VAL 124 n 127 VAL 124 A ASN 125 n 128 ASN 125 A PHE 126 n 129 PHE 126 A PRO 127 n 130 PRO 127 A SER 128 n 131 SER 128 A ASN 129 n 132 ASN 129 A GLY 130 n 133 GLY 130 A ALA 131 n 134 ALA 131 A VAL 132 n 135 VAL 132 A MET 133 n 136 MET 133 A GLN 134 n 137 GLN 134 A LYS 135 n 138 LYS 135 A LYS 136 n 139 LYS 136 A THR 137 n 140 THR 137 A LYS 138 n 141 LYS 138 A GLY 139 n 142 GLY 139 A TRP 140 n 143 TRP 140 A GLU 141 n 144 GLU 141 A PRO 142 n 145 PRO 142 A ASN 143 n 146 ASN 143 A THR 144 n 147 THR 144 A GLU 145 n 148 GLU 145 A MET 146 n 149 MET 146 A MET 147 n 150 MET 147 A TYR 148 n 151 TYR 148 A PRO 149 n 152 PRO 149 A ALA 150 n 153 ALA 150 A ASP 151 n 154 ASP 151 A GLY 152 n 155 GLY 152 A GLY 153 n 156 GLY 153 A LEU 154 n 157 LEU 154 A ARG 155 n 158 ARG 155 A GLY 156 n 159 GLY 156 A TYR 157 n 160 TYR 157 A THR 158 n 161 THR 158 A HIS 159 n 162 HIS 159 A MET 160 n 163 MET 160 A ALA 161 n 164 ALA 161 A LEU 162 n 165 LEU 162 A LYS 163 n 166 LYS 163 A VAL 164 n 167 VAL 164 A ASP 165 n 168 ASP 165 A GLY 166 n 169 GLY 166 A GLY 167 n 170 GLY 167 A GLY 168 n 171 GLY 168 A HIS 169 n 172 HIS 169 A LEU 170 n 173 LEU 170 A SER 171 n 174 SER 171 A CYS 172 n 175 CYS 172 A SER 173 n 176 SER 173 A PHE 174 n 177 PHE 174 A VAL 175 n 178 VAL 175 A THR 176 n 179 THR 176 A THR 177 n 180 THR 177 A TYR 178 n 181 TYR 178 A ARG 179 n 182 ARG 179 A SER 180 n 183 SER 180 A LYS 181 n 184 LYS 181 A LYS 182 n 185 LYS 182 A THR 183 n 186 THR 183 A VAL 184 n 187 VAL 184 A GLY 185 n 188 GLY 185 A ASN 186 n 189 ASN 186 A ILE 187 n 190 ILE 187 A LYS 188 n 191 LYS 188 A MET 189 n 192 MET 189 A PRO 190 n 193 PRO 190 A GLY 191 n 194 GLY 191 A ILE 192 n 195 ILE 192 A HIS 193 n 196 HIS 193 A ALA 194 n 197 ALA 194 A VAL 195 n 198 VAL 195 A SER 196 n 199 SER 196 A HIS 197 n 200 HIS 197 A ARG 198 n 201 ARG 198 A LEU 199 n 202 LEU 199 A GLU 200 n 203 GLU 200 A ARG 201 n 204 ARG 201 A LEU 202 n 205 LEU 202 A GLU 203 n 206 GLU 203 A GLU 204 n 207 GLU 204 A SER 205 n 208 SER 205 A ASP 206 n 209 ASP 206 A ASN 207 n 210 ASN 207 A GLU 208 n 211 GLU 208 A MET 209 n 212 MET 209 A PHE 210 n 213 PHE 210 A VAL 211 n 214 VAL 211 A VAL 212 n 215 VAL 212 A GLN 213 n 216 GLN 213 A ARG 214 n 217 ARG 214 A GLU 215 n 218 GLU 215 A HIS 216 n 219 HIS 216 A ALA 217 n 220 ALA 217 A VAL 218 n 221 VAL 218 A ALA 219 n 222 ALA 219 A LYS 220 n 223 LYS 220 A PHE 221 n 224 PHE 221 A ALA 222 n 225 ALA 222 A GLY 223 n 226 GLY 223 A LEU 224 n 227 LEU 224 A GLY 225 n 228 GLY 225 A GLY 226 n 229 GLY 226 A GLY 227 n 230 GLY 227 A author_and_software_defined_assembly PISA 1 monomeric A NRQ 64 A NRQ 68 MET A NRQ 64 A NRQ 68 TYR A NRQ 64 A NRQ 68 GLY 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 139 A N GLY 142 A O LYS 163 A O LYS 166 A N LEU 162 A N LEU 165 A O LEU 170 A O LEU 173 A O ARG 179 A O ARG 182 A N THR 89 A N THR 92 A N TRP 90 A N TRP 93 A O GLN 106 A O GLN 109 A N GLU 111 A N GLU 114 A O CYS 114 A O CYS 117 A O GLY 123 A O GLY 126 A N SER 18 A N SER 23 A N LEU 15 A N LEU 20 A O CYS 26 A O CYS 31 A N GLU 29 A N GLU 34 A O ARG 42 A O ARG 47 A N ILE 43 A N ILE 48 A O VAL 211 A O VAL 214 A O VAL 218 A O VAL 221 A N SER 196 A N SER 199 A O HIS 197 A O HIS 200 A N ASN 143 A N ASN 146 A N ALA 150 A N ALA 153 A O GLY 153 A O GLY 156 1 A ASP -4 A ASP 1 1 Y 1 A ARG -3 A ARG 2 1 Y 1 A TRP -2 A TRP 3 1 Y 1 A GLY -1 A GLY 4 1 Y 1 A SER 0 A SER 5 1 Y 1 A MET 1 A MET 6 1 Y 1 A ASN 2 A ASN 7 1 Y 1 A SER 3 A SER 8 1 Y 1 A A N O ASN HOH 207 347 1.67 1 A A OD1 O ASN HOH 207 347 1.90 A 1 A A O O HOH HOH 279 388 2.06 1 A A O O HOH HOH 302 372 2.15 1 -14.66 1.60 100.20 85.54 A A A CG SD CE MET MET MET 11 11 11 B B B N 1 4.34 0.50 120.30 124.64 A A A NE CZ NH1 ARG ARG ARG 42 42 42 N 1 3.75 0.60 121.00 124.75 A A A CB CG CD2 TYR TYR TYR 72 72 72 N 1 -12.95 2.10 111.80 98.85 A A A CG CD NE ARG ARG ARG 95 95 95 N 1 -3.66 0.60 121.00 117.34 A A A CB CG CD2 TYR TYR TYR 96 96 96 N 1 7.33 0.90 118.30 125.63 A A A CB CG OD1 ASP ASP ASP 98 98 98 N 1 -6.86 0.90 118.30 111.44 A A A CB CG OD2 ASP ASP ASP 98 98 98 N 1 15.31 1.60 100.20 115.51 A A A CG SD CE MET MET MET 209 209 209 A A A N 1 -14.46 1.60 100.20 85.74 A A A CG SD CE MET MET MET 209 209 209 B B B N 1 4.32 0.50 120.30 124.62 A A A NE CZ NH1 ARG ARG ARG 214 214 214 A A A N 1 A A CA CB SER SER 61 61 -0.090 0.015 1.525 1.435 N 1 A A CG CD GLU GLU 91 91 0.090 0.015 1.515 1.605 A A N 1 A A CD OE2 GLU GLU 91 91 0.074 0.011 1.252 1.326 A A N 1 A A CB CG GLU GLU 97 97 -0.132 0.019 1.517 1.385 N 1 A A CG CD GLU GLU 97 97 0.091 0.015 1.515 1.606 N 1 A A CG CD2 HIS HIS 118 118 0.063 0.009 1.354 1.417 A A N 1 A A CG CD2 HIS HIS 118 118 0.054 0.009 1.354 1.408 B B N 1 A A CG CD2 HIS HIS 159 159 0.060 0.009 1.354 1.414 N 1 A A CB CG2 VAL VAL 164 164 -0.159 0.021 1.524 1.365 N 1 A A CD1 CE1 PHE PHE 174 174 -0.124 0.020 1.388 1.264 N 1 A A CB CG1 VAL VAL 175 175 -0.127 0.021 1.524 1.397 N 1 A A CG CD2 HIS HIS 197 197 0.068 0.009 1.354 1.422 N 1 A A CG CD ARG ARG 201 201 -0.166 0.025 1.515 1.349 N 1 A A CG CD2 HIS HIS 216 216 0.058 0.009 1.354 1.412 B B N 1 A A O O HOH HOH 263 296 2.15 1_555 8_555 1 A PRO 52 -91.39 32.34 1 A PHE 69 -99.87 50.27 11.722 -0.21 -0.00 0.00 0.56 -0.00 -0.35 0.962 0.955 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT 0.17851 0.15429 0.15554 0.15554 1.60 27.89 1673 31351 31279 5.1 99.77 1.228 0.044 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.075 0.80 0.80 1.20 PDB entry 1UIS MAXIMUM LIKELIHOOD MASK 1.60 27.89 195 1948 10 0 1743 0.031 0.022 1925 0.002 0.020 1336 2.670 1.971 2626 1.234 3.000 3267 6.386 5.000 259 34.673 23.750 88 13.542 15.000 340 20.638 15.000 12 0.155 0.200 273 0.013 0.021 2201 0.006 0.020 417 0.270 0.186 1.641 115 2164 20 99.96 1.6 27.90 3U0N 33021 32955 0 0 1 99.8 1.6 1.69 1 100 data collection SPEC phasing PHASER refinement REFMAC 5.6.0111 data reduction MOSFLM data scaling SCALA Crystal structure of the engineered fluorescent protein mRuby, crystal form 2 1 N N 2 N N 2 N N 3 N N A PHE 55 A PHE 60 HELX_P A THR 60 A THR 65 1 1 6 A ASP 78 A ASP 81 HELX_P A SER 83 A SER 86 1 2 6 A ALA 222 A ALA 225 HELX_P A GLY 227 A GLY 230 5 3 6 covale 1.271 both A PHE 62 A C PHE 67 1_555 A NRQ 64 A N1 NRQ 68 1_555 covale 1.301 both A NRQ 64 A C3 NRQ 68 1_555 A SER 66 A N SER 69 1_555 FLUORESCENT PROTEIN fluorescent protein A GLY 49 A GLY 54 1 A PRO 50 A PRO 55 0.69 A PHE 84 A PHE 87 1 A PRO 85 A PRO 88 9.12 3U0N PDB 1 1 3U0N MNSLIKENMRMKVVLEGSVNGHQFKCTGEGEGNPYMGTQTMRIKVIEGGPLPFAFDILATSFMYGSRTFIKYPKGIPDFF KQSFPEGFTWERVTRYEDGGVITVMQDTSLEDGCLVYHAQVRGVNFPSNGAVMQKKTKGWEPNTEMMYPADGGLRGYTHM ALKVDGGGHLSCSFVTTYRSKKTVGNIKMPGIHAVDHRLERLEESDNEMFVVQREHAVAKFAGLGGG -4 227 3U0N -4 227 3U0N A 1 1 230 1 expression tag ASP -4 3U0N A 3U0N PDB 1 1 expression tag ARG -3 3U0N A 3U0N PDB 2 1 expression tag TRP -2 3U0N A 3U0N PDB 3 1 expression tag GLY -1 3U0N A 3U0N PDB 4 1 expression tag SER 0 3U0N A 3U0N PDB 5 1 MET chromophore NRQ 64 3U0N A 3U0N PDB 63 68 1 TYR chromophore NRQ 64 3U0N A 3U0N PDB 64 68 1 GLY chromophore NRQ 64 3U0N A 3U0N PDB 65 68 1 ASP engineered mutation SER 196 3U0N A 3U0N PDB 196 199 13 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 137 A THR 140 A TRP 140 A TRP 143 A GLY 153 A GLY 156 A VAL 164 A VAL 167 A HIS 169 A HIS 172 A SER 180 A SER 183 A PHE 88 A PHE 91 A TYR 96 A TYR 99 A VAL 101 A VAL 104 A GLU 111 A GLU 114 A CYS 114 A CYS 117 A VAL 124 A VAL 127 A MET 9 A MET 14 A VAL 19 A VAL 24 A HIS 22 A HIS 27 A ASN 33 A ASN 38 A THR 38 A THR 43 A GLU 47 A GLU 52 A PHE 210 A PHE 213 A LYS 220 A LYS 223 A HIS 193 A HIS 196 A GLU 204 A GLU 207 A ASN 143 A ASN 146 A ALA 150 A ALA 153 A GLY 153 A GLY 156 A VAL 164 A VAL 167 BINDING SITE FOR RESIDUE SO4 A 228 A SO4 228 Software 10 BINDING SITE FOR RESIDUE SO4 A 229 A SO4 229 Software 5 A LYS 74 A LYS 77 10 1_555 A GLY 75 A GLY 78 10 1_555 A ILE 76 A ILE 79 10 1_555 A PRO 77 A PRO 80 10 1_555 A PRO 127 A PRO 130 10 6_554 A SER 128 A SER 131 10 6_554 A LYS 188 A LYS 191 10 1_555 A HOH 245 D HOH 10 1_555 A HOH 257 D HOH 10 1_555 A HOH 332 D HOH 10 6_554 A ARG 10 A ARG 15 5 1_555 A LYS 12 A LYS 17 5 1_555 A HIS 159 A HIS 162 5 8_455 A SER 171 A SER 174 5 8_455 A HOH 409 D HOH 5 8_455 23 I 2 2 2