0.013617
0.000000
0.000000
0.000000
0.013617
0.000000
0.000000
0.000000
0.009516
0.00000
0.00000
0.00000
Kuzin, A.
Su, M.
Seetharaman, J.
Sahdev, S.
Xiao, R.
Kohan, E.
Richter, F.
Everett, J.K.
Acton, T.B.
Baker, D.
Montelione, G.T.
Hunt, J.F.
Tong, L.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
73.436
73.436
105.083
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
MG
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
SE
N
239
N
C
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
NA
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
P
N
293
N
O
N
294
N
O
N
295
N
O
N
296
N
O
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
O
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
R
C
N
333
N
O
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
N
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
N
401
N
C
N
402
N
C
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
Y
264
N
doub
Y
265
N
sing
Y
266
N
sing
N
267
N
sing
Y
268
N
doub
N
269
N
sing
Y
270
N
doub
N
271
N
sing
Y
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
doub
Y
342
N
sing
Y
343
N
sing
N
344
N
sing
Y
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
134
16197
16206
10.1021/ja3037367
22871159
Computational design of catalytic dyads and oxyanion holes for ester hydrolysis.
2012
10.2210/pdb3u13/pdb
pdb_00003u13
100
1
Rh coated flat mirror
CCD
2011-05-12
MARMOSAIC 325 mm CCD
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
BL9-2
SSRL
0.97918
SYNCHROTRON
SSRL BEAMLINE BL9-2
24193.996
artificial protein OR51
1
man
polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
248
nat
water
5',3'-nucleotidase, mitochondrial, Deoxy-5'-nucleotidase 2, dNT-2
no
yes
(MSE)GGRALRVLVD(MSE)DGVLADVEGGLLRKFRARFPDQPFIALEDRRGYKACEQYGRLRPGLSEKARSIAESKNFF
FELEPLPGAVEAVKE(MSE)ASLQNTDVFICTSPHK(MSE)FKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLI
DDRPDITGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPCGSLEHHHHHH
MGGRALRVLVDMDGVLADVEGGLLRKFRARFPDQPFIALEDRRGYKACEQYGRLRPGLSEKARSIAESKNFFFELEPLPG
AVEAVKEMASLQNTDVFICTSPHKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWE
HVLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPCGSLEHHHHHH
A
OR51
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
32630
synthetic construct
BL21(DE3)
469008
Escherichia coli
plasmid
pET29b+
1
2.92
57.81
VAPOR DIFFUSION, SITTING DROP
6.0
Protein solution: 100mM NaCl, 5mM DTT, 0.02% NaN3, 10mM Tris-HCl (pH 7.5) . Reservoir solution:0.1M NaHPO4, 0.1M MES, PEG 20K 12%, VAPOR DIFFUSION, SITTING DROP, temperature 277KK
277
Northeast Structural Genomics Consortium
NESG
PSI:Biology
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
pdbx_struct_special_symmetry
struct_conn
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2011-11-23
1
1
2013-12-11
1
2
2023-09-13
1
3
2023-12-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
95% homology
Y
RCSB
Y
RCSB
2011-09-29
REL
REL
PO4
PHOSPHATE ION
MG
MAGNESIUM ION
PEG
DI(HYDROXYETHYL)ETHER
NA
SODIUM ION
HOH
water
1Q92
pdb entry 1Q92
PDB
experimental model
PO4
1
2
PO4
PO4
209
A
MG
1003
3
MG
MG
1003
A
PO4
2
2
PO4
PO4
210
A
PEG
1
4
PEG
PEG
211
A
NA
1
5
NA
NA
212
A
HOH
213
6
HOH
HOH
213
A
HOH
214
6
HOH
HOH
214
A
HOH
215
6
HOH
HOH
215
A
HOH
216
6
HOH
HOH
216
A
HOH
217
6
HOH
HOH
217
A
HOH
218
6
HOH
HOH
218
A
HOH
219
6
HOH
HOH
219
A
HOH
220
6
HOH
HOH
220
A
HOH
221
6
HOH
HOH
221
A
HOH
222
6
HOH
HOH
222
A
HOH
223
6
HOH
HOH
223
A
HOH
224
6
HOH
HOH
224
A
HOH
225
6
HOH
HOH
225
A
HOH
226
6
HOH
HOH
226
A
HOH
227
6
HOH
HOH
227
A
HOH
228
6
HOH
HOH
228
A
HOH
229
6
HOH
HOH
229
A
HOH
230
6
HOH
HOH
230
A
HOH
231
6
HOH
HOH
231
A
HOH
232
6
HOH
HOH
232
A
HOH
233
6
HOH
HOH
233
A
HOH
234
6
HOH
HOH
234
A
HOH
235
6
HOH
HOH
235
A
HOH
236
6
HOH
HOH
236
A
HOH
237
6
HOH
HOH
237
A
HOH
238
6
HOH
HOH
238
A
HOH
239
6
HOH
HOH
239
A
HOH
240
6
HOH
HOH
240
A
HOH
241
6
HOH
HOH
241
A
HOH
242
6
HOH
HOH
242
A
HOH
243
6
HOH
HOH
243
A
HOH
244
6
HOH
HOH
244
A
HOH
245
6
HOH
HOH
245
A
HOH
246
6
HOH
HOH
246
A
HOH
247
6
HOH
HOH
247
A
HOH
248
6
HOH
HOH
248
A
HOH
249
6
HOH
HOH
249
A
HOH
250
6
HOH
HOH
250
A
HOH
251
6
HOH
HOH
251
A
HOH
252
6
HOH
HOH
252
A
HOH
1
6
HOH
HOH
253
A
HOH
2
6
HOH
HOH
254
A
HOH
3
6
HOH
HOH
255
A
HOH
4
6
HOH
HOH
256
A
HOH
5
6
HOH
HOH
257
A
HOH
6
6
HOH
HOH
258
A
HOH
7
6
HOH
HOH
259
A
HOH
8
6
HOH
HOH
260
A
HOH
9
6
HOH
HOH
261
A
HOH
10
6
HOH
HOH
262
A
HOH
11
6
HOH
HOH
263
A
HOH
12
6
HOH
HOH
264
A
HOH
13
6
HOH
HOH
265
A
HOH
14
6
HOH
HOH
266
A
HOH
15
6
HOH
HOH
267
A
HOH
16
6
HOH
HOH
268
A
HOH
17
6
HOH
HOH
269
A
HOH
18
6
HOH
HOH
270
A
HOH
19
6
HOH
HOH
271
A
HOH
20
6
HOH
HOH
272
A
HOH
21
6
HOH
HOH
273
A
HOH
22
6
HOH
HOH
274
A
HOH
23
6
HOH
HOH
275
A
HOH
24
6
HOH
HOH
276
A
HOH
25
6
HOH
HOH
277
A
HOH
26
6
HOH
HOH
278
A
HOH
27
6
HOH
HOH
279
A
HOH
28
6
HOH
HOH
280
A
HOH
29
6
HOH
HOH
281
A
HOH
30
6
HOH
HOH
282
A
HOH
31
6
HOH
HOH
283
A
HOH
32
6
HOH
HOH
284
A
HOH
33
6
HOH
HOH
285
A
HOH
34
6
HOH
HOH
286
A
HOH
35
6
HOH
HOH
287
A
HOH
36
6
HOH
HOH
288
A
HOH
37
6
HOH
HOH
289
A
HOH
38
6
HOH
HOH
290
A
HOH
39
6
HOH
HOH
291
A
HOH
40
6
HOH
HOH
292
A
HOH
41
6
HOH
HOH
293
A
HOH
42
6
HOH
HOH
294
A
HOH
43
6
HOH
HOH
295
A
HOH
44
6
HOH
HOH
296
A
HOH
45
6
HOH
HOH
297
A
HOH
46
6
HOH
HOH
298
A
HOH
47
6
HOH
HOH
299
A
HOH
48
6
HOH
HOH
300
A
HOH
49
6
HOH
HOH
301
A
HOH
50
6
HOH
HOH
302
A
HOH
51
6
HOH
HOH
303
A
HOH
52
6
HOH
HOH
304
A
HOH
53
6
HOH
HOH
305
A
HOH
54
6
HOH
HOH
306
A
HOH
55
6
HOH
HOH
307
A
HOH
56
6
HOH
HOH
308
A
HOH
57
6
HOH
HOH
309
A
HOH
58
6
HOH
HOH
310
A
HOH
59
6
HOH
HOH
311
A
HOH
60
6
HOH
HOH
312
A
HOH
61
6
HOH
HOH
313
A
HOH
62
6
HOH
HOH
314
A
HOH
64
6
HOH
HOH
315
A
HOH
65
6
HOH
HOH
316
A
HOH
66
6
HOH
HOH
317
A
HOH
67
6
HOH
HOH
318
A
HOH
68
6
HOH
HOH
319
A
HOH
69
6
HOH
HOH
320
A
HOH
70
6
HOH
HOH
321
A
HOH
71
6
HOH
HOH
322
A
HOH
72
6
HOH
HOH
323
A
HOH
73
6
HOH
HOH
324
A
HOH
74
6
HOH
HOH
325
A
HOH
75
6
HOH
HOH
326
A
HOH
76
6
HOH
HOH
327
A
HOH
77
6
HOH
HOH
328
A
HOH
78
6
HOH
HOH
329
A
HOH
79
6
HOH
HOH
330
A
HOH
80
6
HOH
HOH
331
A
HOH
81
6
HOH
HOH
332
A
HOH
82
6
HOH
HOH
333
A
HOH
83
6
HOH
HOH
334
A
HOH
84
6
HOH
HOH
335
A
HOH
85
6
HOH
HOH
336
A
HOH
86
6
HOH
HOH
337
A
HOH
87
6
HOH
HOH
338
A
HOH
88
6
HOH
HOH
339
A
HOH
89
6
HOH
HOH
340
A
HOH
90
6
HOH
HOH
341
A
HOH
91
6
HOH
HOH
342
A
HOH
92
6
HOH
HOH
343
A
HOH
93
6
HOH
HOH
344
A
HOH
94
6
HOH
HOH
345
A
HOH
95
6
HOH
HOH
346
A
HOH
96
6
HOH
HOH
347
A
HOH
97
6
HOH
HOH
348
A
HOH
98
6
HOH
HOH
349
A
HOH
99
6
HOH
HOH
350
A
HOH
100
6
HOH
HOH
351
A
HOH
101
6
HOH
HOH
352
A
HOH
102
6
HOH
HOH
353
A
HOH
103
6
HOH
HOH
354
A
HOH
104
6
HOH
HOH
355
A
HOH
105
6
HOH
HOH
356
A
HOH
106
6
HOH
HOH
357
A
HOH
107
6
HOH
HOH
358
A
HOH
108
6
HOH
HOH
359
A
HOH
109
6
HOH
HOH
360
A
HOH
110
6
HOH
HOH
361
A
HOH
111
6
HOH
HOH
362
A
HOH
112
6
HOH
HOH
363
A
HOH
113
6
HOH
HOH
364
A
HOH
114
6
HOH
HOH
365
A
HOH
116
6
HOH
HOH
366
A
HOH
117
6
HOH
HOH
367
A
HOH
118
6
HOH
HOH
368
A
HOH
119
6
HOH
HOH
369
A
HOH
120
6
HOH
HOH
370
A
HOH
121
6
HOH
HOH
371
A
HOH
122
6
HOH
HOH
372
A
HOH
123
6
HOH
HOH
373
A
HOH
125
6
HOH
HOH
374
A
HOH
126
6
HOH
HOH
375
A
HOH
127
6
HOH
HOH
376
A
HOH
128
6
HOH
HOH
377
A
HOH
129
6
HOH
HOH
378
A
HOH
130
6
HOH
HOH
379
A
HOH
131
6
HOH
HOH
380
A
HOH
132
6
HOH
HOH
381
A
HOH
133
6
HOH
HOH
382
A
HOH
134
6
HOH
HOH
383
A
HOH
135
6
HOH
HOH
384
A
HOH
136
6
HOH
HOH
385
A
HOH
137
6
HOH
HOH
386
A
HOH
138
6
HOH
HOH
387
A
HOH
139
6
HOH
HOH
388
A
HOH
140
6
HOH
HOH
389
A
HOH
141
6
HOH
HOH
390
A
HOH
142
6
HOH
HOH
391
A
HOH
143
6
HOH
HOH
392
A
HOH
144
6
HOH
HOH
393
A
HOH
145
6
HOH
HOH
394
A
HOH
146
6
HOH
HOH
395
A
HOH
147
6
HOH
HOH
396
A
HOH
148
6
HOH
HOH
397
A
HOH
149
6
HOH
HOH
398
A
HOH
150
6
HOH
HOH
399
A
HOH
151
6
HOH
HOH
400
A
HOH
152
6
HOH
HOH
401
A
HOH
153
6
HOH
HOH
402
A
HOH
154
6
HOH
HOH
403
A
HOH
155
6
HOH
HOH
404
A
HOH
156
6
HOH
HOH
405
A
HOH
157
6
HOH
HOH
406
A
HOH
158
6
HOH
HOH
407
A
HOH
159
6
HOH
HOH
408
A
HOH
160
6
HOH
HOH
409
A
HOH
161
6
HOH
HOH
410
A
HOH
162
6
HOH
HOH
411
A
HOH
163
6
HOH
HOH
412
A
HOH
164
6
HOH
HOH
413
A
HOH
165
6
HOH
HOH
414
A
HOH
166
6
HOH
HOH
415
A
HOH
167
6
HOH
HOH
416
A
HOH
168
6
HOH
HOH
417
A
HOH
169
6
HOH
HOH
418
A
HOH
170
6
HOH
HOH
419
A
HOH
171
6
HOH
HOH
420
A
HOH
172
6
HOH
HOH
421
A
HOH
173
6
HOH
HOH
422
A
HOH
174
6
HOH
HOH
423
A
HOH
175
6
HOH
HOH
424
A
HOH
176
6
HOH
HOH
425
A
HOH
177
6
HOH
HOH
426
A
HOH
178
6
HOH
HOH
427
A
HOH
179
6
HOH
HOH
428
A
HOH
180
6
HOH
HOH
429
A
HOH
181
6
HOH
HOH
430
A
HOH
182
6
HOH
HOH
431
A
HOH
183
6
HOH
HOH
432
A
HOH
184
6
HOH
HOH
433
A
HOH
185
6
HOH
HOH
434
A
HOH
186
6
HOH
HOH
435
A
HOH
188
6
HOH
HOH
436
A
HOH
189
6
HOH
HOH
437
A
HOH
190
6
HOH
HOH
438
A
HOH
191
6
HOH
HOH
439
A
HOH
192
6
HOH
HOH
440
A
HOH
193
6
HOH
HOH
441
A
HOH
194
6
HOH
HOH
442
A
HOH
195
6
HOH
HOH
443
A
HOH
196
6
HOH
HOH
444
A
HOH
197
6
HOH
HOH
445
A
HOH
198
6
HOH
HOH
446
A
HOH
199
6
HOH
HOH
447
A
HOH
200
6
HOH
HOH
448
A
HOH
201
6
HOH
HOH
449
A
HOH
202
6
HOH
HOH
450
A
HOH
203
6
HOH
HOH
451
A
HOH
204
6
HOH
HOH
452
A
HOH
205
6
HOH
HOH
453
A
HOH
206
6
HOH
HOH
454
A
HOH
207
6
HOH
HOH
455
A
HOH
208
6
HOH
HOH
456
A
HOH
209
6
HOH
HOH
457
A
HOH
210
6
HOH
HOH
458
A
HOH
211
6
HOH
HOH
459
A
HOH
212
6
HOH
HOH
460
A
n
1
1
A
n
2
2
A
GLY
3
n
3
GLY
3
A
ARG
4
n
4
ARG
4
A
ALA
5
n
5
ALA
5
A
LEU
6
n
6
LEU
6
A
ARG
7
n
7
ARG
7
A
VAL
8
n
8
VAL
8
A
LEU
9
n
9
LEU
9
A
VAL
10
n
10
VAL
10
A
ASP
11
n
11
ASP
11
A
MSE
12
n
12
MSE
12
A
ASP
13
n
13
ASP
13
A
GLY
14
n
14
GLY
14
A
VAL
15
n
15
VAL
15
A
LEU
16
n
16
LEU
16
A
ALA
17
n
17
ALA
17
A
ASP
18
n
18
ASP
18
A
VAL
19
n
19
VAL
19
A
GLU
20
n
20
GLU
20
A
GLY
21
n
21
GLY
21
A
GLY
22
n
22
GLY
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ARG
25
n
25
ARG
25
A
LYS
26
n
26
LYS
26
A
PHE
27
n
27
PHE
27
A
ARG
28
n
28
ARG
28
A
ALA
29
n
29
ALA
29
A
ARG
30
n
30
ARG
30
A
PHE
31
n
31
PHE
31
A
PRO
32
n
32
PRO
32
A
ASP
33
n
33
ASP
33
A
GLN
34
n
34
GLN
34
A
PRO
35
n
35
PRO
35
A
PHE
36
n
36
PHE
36
A
ILE
37
n
37
ILE
37
A
ALA
38
n
38
ALA
38
A
LEU
39
n
39
LEU
39
A
GLU
40
n
40
GLU
40
A
ASP
41
n
41
ASP
41
A
ARG
42
n
42
ARG
42
A
ARG
43
n
43
ARG
43
A
GLY
44
n
44
GLY
44
A
TYR
45
n
45
TYR
45
A
LYS
46
n
46
LYS
46
A
ALA
47
n
47
ALA
47
A
CYS
48
n
48
CYS
48
A
GLU
49
n
49
GLU
49
A
GLN
50
n
50
GLN
50
A
TYR
51
n
51
TYR
51
A
GLY
52
n
52
GLY
52
A
ARG
53
n
53
ARG
53
A
LEU
54
n
54
LEU
54
A
ARG
55
n
55
ARG
55
A
PRO
56
n
56
PRO
56
A
GLY
57
n
57
GLY
57
A
LEU
58
n
58
LEU
58
A
SER
59
n
59
SER
59
A
GLU
60
n
60
GLU
60
A
LYS
61
n
61
LYS
61
A
ALA
62
n
62
ALA
62
A
ARG
63
n
63
ARG
63
A
SER
64
n
64
SER
64
A
ILE
65
n
65
ILE
65
A
ALA
66
n
66
ALA
66
A
GLU
67
n
67
GLU
67
A
SER
68
n
68
SER
68
A
LYS
69
n
69
LYS
69
A
ASN
70
n
70
ASN
70
A
PHE
71
n
71
PHE
71
A
PHE
72
n
72
PHE
72
A
PHE
73
n
73
PHE
73
A
GLU
74
n
74
GLU
74
A
LEU
75
n
75
LEU
75
A
GLU
76
n
76
GLU
76
A
PRO
77
n
77
PRO
77
A
LEU
78
n
78
LEU
78
A
PRO
79
n
79
PRO
79
A
GLY
80
n
80
GLY
80
A
ALA
81
n
81
ALA
81
A
VAL
82
n
82
VAL
82
A
GLU
83
n
83
GLU
83
A
ALA
84
n
84
ALA
84
A
VAL
85
n
85
VAL
85
A
LYS
86
n
86
LYS
86
A
GLU
87
n
87
GLU
87
A
MSE
88
n
88
MSE
88
A
ALA
89
n
89
ALA
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
GLN
92
n
92
GLN
92
A
ASN
93
n
93
ASN
93
A
THR
94
n
94
THR
94
A
ASP
95
n
95
ASP
95
A
VAL
96
n
96
VAL
96
A
PHE
97
n
97
PHE
97
A
ILE
98
n
98
ILE
98
A
CYS
99
n
99
CYS
99
A
THR
100
n
100
THR
100
A
SER
101
n
101
SER
101
A
PRO
102
n
102
PRO
102
A
HIS
103
n
103
HIS
103
A
LYS
104
n
104
LYS
104
A
MSE
105
n
105
MSE
105
A
PHE
106
n
106
PHE
106
A
LYS
107
n
107
LYS
107
A
TYR
108
n
108
TYR
108
A
CYS
109
n
109
CYS
109
A
PRO
110
n
110
PRO
110
A
TYR
111
n
111
TYR
111
A
GLU
112
n
112
GLU
112
A
LYS
113
n
113
LYS
113
A
TYR
114
n
114
TYR
114
A
ALA
115
n
115
ALA
115
A
TRP
116
n
116
TRP
116
A
VAL
117
n
117
VAL
117
A
GLU
118
n
118
GLU
118
A
LYS
119
n
119
LYS
119
A
TYR
120
n
120
TYR
120
A
PHE
121
n
121
PHE
121
A
GLY
122
n
122
GLY
122
A
PRO
123
n
123
PRO
123
A
ASP
124
n
124
ASP
124
A
PHE
125
n
125
PHE
125
A
LEU
126
n
126
LEU
126
A
GLU
127
n
127
GLU
127
A
GLN
128
n
128
GLN
128
A
ILE
129
n
129
ILE
129
A
VAL
130
n
130
VAL
130
A
LEU
131
n
131
LEU
131
A
THR
132
n
132
THR
132
A
ARG
133
n
133
ARG
133
A
ASP
134
n
134
ASP
134
A
LYS
135
n
135
LYS
135
A
THR
136
n
136
THR
136
A
VAL
137
n
137
VAL
137
A
VAL
138
n
138
VAL
138
A
SER
139
n
139
SER
139
A
ALA
140
n
140
ALA
140
A
ASP
141
n
141
ASP
141
A
LEU
142
n
142
LEU
142
A
LEU
143
n
143
LEU
143
A
ILE
144
n
144
ILE
144
A
ASP
145
n
145
ASP
145
A
ASP
146
n
146
ASP
146
A
ARG
147
n
147
ARG
147
A
PRO
148
n
148
PRO
148
A
ASP
149
n
149
ASP
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
GLY
152
n
152
GLY
152
A
ALA
153
n
153
ALA
153
A
GLU
154
n
154
GLU
154
A
PRO
155
n
155
PRO
155
A
THR
156
n
156
THR
156
A
PRO
157
n
157
PRO
157
A
SER
158
n
158
SER
158
A
TRP
159
n
159
TRP
159
A
GLU
160
n
160
GLU
160
A
HIS
161
n
161
HIS
161
A
VAL
162
n
162
VAL
162
A
LEU
163
n
163
LEU
163
A
PHE
164
n
164
PHE
164
A
THR
165
n
165
THR
165
A
ALA
166
n
166
ALA
166
A
CYS
167
n
167
CYS
167
A
HIS
168
n
168
HIS
168
A
ASN
169
n
169
ASN
169
A
GLN
170
n
170
GLN
170
A
HIS
171
n
171
HIS
171
A
LEU
172
n
172
LEU
172
A
GLN
173
n
173
GLN
173
A
LEU
174
n
174
LEU
174
A
GLN
175
n
175
GLN
175
A
PRO
176
n
176
PRO
176
A
PRO
177
n
177
PRO
177
A
ARG
178
n
178
ARG
178
A
ARG
179
n
179
ARG
179
A
ARG
180
n
180
ARG
180
A
LEU
181
n
181
LEU
181
A
HIS
182
n
182
HIS
182
A
SER
183
n
183
SER
183
A
TRP
184
n
184
TRP
184
A
ALA
185
n
185
ALA
185
A
ASP
186
n
186
ASP
186
A
ASP
187
n
187
ASP
187
A
TRP
188
n
188
TRP
188
A
LYS
189
n
189
LYS
189
A
ALA
190
n
190
ALA
190
A
ILE
191
n
191
ILE
191
A
LEU
192
n
192
LEU
192
A
ASP
193
n
193
ASP
193
A
SER
194
n
194
SER
194
A
LYS
195
n
195
LYS
195
A
ARG
196
n
196
ARG
196
A
PRO
197
n
197
PRO
197
A
n
198
198
A
n
199
199
A
n
200
200
A
n
201
201
A
n
202
202
A
n
203
203
A
n
204
204
A
n
205
205
A
n
206
206
A
n
207
207
A
n
208
208
A
2.2193
-0.1720
-0.4426
1.6243
-0.3777
1.1478
0.0379
-0.0624
0.0949
0.0156
-0.0130
-0.1523
-0.1052
0.0698
-0.0227
0.1015
-0.0142
0.0298
0.1158
-0.0029
0.0887
refined
-2.7591
20.2865
18.8419
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
all
software_defined_assembly
PISA
2
dimeric
3330
-62
18190
A
ASP
11
A
OD2
ASP
11
1_555
A
MG
1003
C
MG
MG
1_555
A
ASP
13
A
O
ASP
13
1_555
88.7
A
ASP
11
A
OD2
ASP
11
1_555
A
MG
1003
C
MG
MG
1_555
A
ASP
146
A
OD1
ASP
146
1_555
76.1
A
ASP
13
A
O
ASP
13
1_555
A
MG
1003
C
MG
MG
1_555
A
ASP
146
A
OD1
ASP
146
1_555
89.3
A
ASP
11
A
OD2
ASP
11
1_555
A
MG
1003
C
MG
MG
1_555
A
PO4
209
B
O2
PO4
1_555
108.3
A
ASP
13
A
O
ASP
13
1_555
A
MG
1003
C
MG
MG
1_555
A
PO4
209
B
O2
PO4
1_555
99.7
A
ASP
146
A
OD1
ASP
146
1_555
A
MG
1003
C
MG
MG
1_555
A
PO4
209
B
O2
PO4
1_555
170.0
A
ASP
11
A
OD2
ASP
11
1_555
A
MG
1003
C
MG
MG
1_555
A
HOH
271
G
O
HOH
1_555
84.0
A
ASP
13
A
O
ASP
13
1_555
A
MG
1003
C
MG
MG
1_555
A
HOH
271
G
O
HOH
1_555
172.7
A
ASP
146
A
OD1
ASP
146
1_555
A
MG
1003
C
MG
MG
1_555
A
HOH
271
G
O
HOH
1_555
89.0
A
PO4
209
B
O2
PO4
1_555
A
MG
1003
C
MG
MG
1_555
A
HOH
271
G
O
HOH
1_555
82.7
A
ASP
11
A
OD2
ASP
11
1_555
A
MG
1003
C
MG
MG
1_555
A
HOH
377
G
O
HOH
1_555
146.1
A
ASP
13
A
O
ASP
13
1_555
A
MG
1003
C
MG
MG
1_555
A
HOH
377
G
O
HOH
1_555
74.1
A
ASP
146
A
OD1
ASP
146
1_555
A
MG
1003
C
MG
MG
1_555
A
HOH
377
G
O
HOH
1_555
74.7
A
PO4
209
B
O2
PO4
1_555
A
MG
1003
C
MG
MG
1_555
A
HOH
377
G
O
HOH
1_555
103.4
A
HOH
271
G
O
HOH
1_555
A
MG
1003
C
MG
MG
1_555
A
HOH
377
G
O
HOH
1_555
112.2
A
MSE
12
SELENOMETHIONINE
A
MSE
12
MET
A
MSE
88
SELENOMETHIONINE
A
MSE
88
MET
A
MSE
105
SELENOMETHIONINE
A
MSE
105
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
-y,-x,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
52.5415000000
A
O
VAL
130
A
O
VAL
130
A
N
ILE
98
A
N
ILE
98
A
O
ASP
95
A
O
ASP
95
A
N
LEU
6
A
N
LEU
6
A
N
LEU
9
A
N
LEU
9
A
O
LEU
142
A
O
LEU
142
A
N
LEU
143
A
N
LEU
143
A
O
VAL
162
A
O
VAL
162
A
N
LEU
163
A
N
LEU
163
A
O
ARG
179
A
O
ARG
179
1
A
HOH
338
G
HOH
1
A
HOH
441
G
HOH
1
A
MSE
1
A
MSE
1
1
Y
1
A
GLY
2
A
GLY
2
1
Y
1
A
CYS
198
A
CYS
198
1
Y
1
A
GLY
199
A
GLY
199
1
Y
1
A
SER
200
A
SER
200
1
Y
1
A
LEU
201
A
LEU
201
1
Y
1
A
GLU
202
A
GLU
202
1
Y
1
A
HIS
203
A
HIS
203
1
Y
1
A
HIS
204
A
HIS
204
1
Y
1
A
HIS
205
A
HIS
205
1
Y
1
A
HIS
206
A
HIS
206
1
Y
1
A
HIS
207
A
HIS
207
1
Y
1
A
HIS
208
A
HIS
208
1
Y
1
A
MSE
12
-101.46
-60.79
1
A
HIS
103
64.43
-158.90
1
A
LYS
104
-96.96
42.47
1
A
PRO
177
-101.27
40.16
-0.7080
-0.0000
0.0000
-0.7080
-0.0000
1.4161
0.1928
0.1802
0.1808
1.6
29.039
1932
38618
5.00
99.92
1.00
0.25
0.35
1
1.35
MOLECULAR REPLACEMENT
16.57
0.73
1.00
pdb entry 1Q92
ML
FLAT BULK SOLVENT MODEL
50.229
0.382
1.6
29.039
248
1852
19
0
1585
0.008
1688
1.214
2295
11.839
645
0.082
240
0.005
300
0.2402
0.2442
1.6395
140
2557
100.00
0.2441
0.2191
1.6838
135
2570
100.00
0.2095
0.1963
1.7333
145
2572
100.00
0.2495
0.1843
1.7893
131
2590
100.00
0.2102
0.1777
1.8532
118
2585
100.00
0.1882
0.1646
1.9274
157
2575
100.00
0.1937
0.1693
2.0151
155
2568
100.00
0.1684
0.1654
2.1213
139
2601
100.00
0.1797
0.1695
2.2542
120
2630
100.00
0.2186
0.1727
2.4281
138
2618
100.00
0.1914
0.1857
2.6723
134
2648
100.00
0.2118
0.1817
3.0587
133
2665
100.00
0.1704
0.1656
3.8522
149
2678
100.00
0.1841
0.1918
29.0434
138
2829
99.00
1.6
50.0
3U13
72527
-3.0
0.050
1
48.7
9.6
100
0.539
1.6
1.66
4.1
1
8.9
100
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7.2_869
data extraction
PDB
help@deposit.rcsb.org
Jan. 22, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.100
data collection
ADSC
Quantum
data reduction
DENZO
data scaling
SCALEPACK
phasing
BALBES
N
Crystal Structure of de Novo design of cystein esterase ECH13 at the resolution 1.6A, Northeast Structural Genomics Consortium Target OR51
1
N
N
2
N
N
3
N
N
2
N
N
4
N
N
5
N
N
6
N
N
authors indicate the biological unit as a trimer of 61.03 kD at 96.3%
A
ASP
18
A
ASP
18
HELX_P
A
PHE
31
A
PHE
31
1
1
14
A
ALA
38
A
ALA
38
HELX_P
A
ARG
42
A
ARG
42
5
2
5
A
LYS
46
A
LYS
46
HELX_P
A
ARG
55
A
ARG
55
1
3
10
A
GLY
57
A
GLY
57
HELX_P
A
GLU
67
A
GLU
67
1
4
11
A
GLY
80
A
GLY
80
HELX_P
A
LEU
91
A
LEU
91
1
5
12
A
TYR
108
A
TYR
108
HELX_P
A
GLY
122
A
GLY
122
1
6
15
A
PRO
123
A
PRO
123
HELX_P
A
GLU
127
A
GLU
127
5
7
5
A
ASP
187
A
ASP
187
HELX_P
A
SER
194
A
SER
194
1
8
8
covale
1.312
both
A
ASP
11
A
C
ASP
11
1_555
A
MSE
12
A
N
MSE
12
1_555
covale
1.323
both
A
MSE
12
A
C
MSE
12
1_555
A
ASP
13
A
N
ASP
13
1_555
covale
1.331
both
A
GLU
87
A
C
GLU
87
1_555
A
MSE
88
A
N
MSE
88
1_555
covale
1.329
both
A
MSE
88
A
C
MSE
88
1_555
A
ALA
89
A
N
ALA
89
1_555
covale
1.325
both
A
LYS
104
A
C
LYS
104
1_555
A
MSE
105
A
N
MSE
105
1_555
covale
1.334
both
A
MSE
105
A
C
MSE
105
1_555
A
PHE
106
A
N
PHE
106
1_555
metalc
2.447
A
ASP
11
A
OD2
ASP
11
1_555
A
MG
1003
C
MG
MG
1_555
metalc
2.404
A
ASP
13
A
O
ASP
13
1_555
A
MG
1003
C
MG
MG
1_555
metalc
2.364
A
ASP
146
A
OD1
ASP
146
1_555
A
MG
1003
C
MG
MG
1_555
metalc
2.344
A
PO4
209
B
O2
PO4
1_555
A
MG
1003
C
MG
MG
1_555
metalc
3.149
A
NA
212
F
NA
NA
1_555
A
HOH
259
G
O
HOH
1_555
metalc
2.522
A
HOH
271
G
O
HOH
1_555
A
MG
1003
C
MG
MG
1_555
metalc
2.921
A
HOH
377
G
O
HOH
1_555
A
MG
1003
C
MG
MG
1_555
HYDROLASE
Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, ECH13, HYDROLASE
A
GLY
3
A
GLY
3
1
A
ARG
4
A
ARG
4
-2.30
A
PRO
176
A
PRO
176
1
A
PRO
177
A
PRO
177
5.05
3U13
PDB
1
3U13
1
208
3U13
1
208
3U13
A
1
1
208
6
parallel
parallel
parallel
parallel
parallel
A
ILE
129
A
ILE
129
A
LEU
131
A
LEU
131
A
THR
94
A
THR
94
A
THR
100
A
THR
100
A
LEU
6
A
LEU
6
A
VAL
10
A
VAL
10
A
LEU
142
A
LEU
142
A
ASP
145
A
ASP
145
A
GLU
160
A
GLU
160
A
PHE
164
A
PHE
164
A
ARG
179
A
ARG
179
A
LEU
181
A
LEU
181
BINDING SITE FOR RESIDUE MG A 1003
A
MG
1003
Software
7
BINDING SITE FOR RESIDUE PO4 A 209
A
PO4
209
Software
11
BINDING SITE FOR RESIDUE PO4 A 210
A
PO4
210
Software
8
BINDING SITE FOR RESIDUE PEG A 211
A
PEG
211
Software
9
BINDING SITE FOR RESIDUE NA A 212
A
NA
212
Software
5
A
ASP
11
A
ASP
11
7
1_555
A
ASP
13
A
ASP
13
7
1_555
A
TYR
45
A
TYR
45
7
1_555
A
ASP
146
A
ASP
146
7
1_555
A
PO4
209
B
PO4
7
1_555
A
HOH
271
G
HOH
7
1_555
A
HOH
377
G
HOH
7
1_555
A
ASP
11
A
ASP
11
11
1_555
A
MSE
12
A
MSE
12
11
1_555
A
ASP
13
A
ASP
13
11
1_555
A
TYR
45
A
TYR
45
11
1_555
A
THR
100
A
THR
100
11
1_555
A
SER
101
A
SER
101
11
1_555
A
HIS
103
A
HIS
103
11
1_555
A
LYS
113
A
LYS
113
11
1_555
A
LYS
135
A
LYS
135
11
1_555
A
HOH
388
G
HOH
11
1_555
A
MG
1003
C
MG
11
1_555
A
GLU
67
A
GLU
67
8
1_555
A
MSE
105
A
MSE
105
8
1_555
A
TYR
108
A
TYR
108
8
1_555
A
HIS
182
A
HIS
182
8
4_455
A
SER
183
A
SER
183
8
4_455
A
ASP
186
A
ASP
186
8
4_455
A
PEG
211
E
PEG
8
8_555
A
NA
212
F
NA
8
1_555
A
LYS
104
A
LYS
104
9
8_555
A
MSE
105
A
MSE
105
9
8_555
A
PHE
106
A
PHE
106
9
8_555
A
GLU
118
A
GLU
118
9
1_555
A
PRO
123
A
PRO
123
9
1_555
A
LEU
126
A
LEU
126
9
1_555
A
HIS
182
A
HIS
182
9
6_455
A
PO4
210
D
PO4
9
8_555
A
HOH
321
G
HOH
9
6_455
A
MSE
105
A
MSE
105
5
1_555
A
LYS
107
A
LYS
107
5
1_555
A
TYR
108
A
TYR
108
5
1_555
A
CYS
109
A
CYS
109
5
1_555
A
PO4
210
D
PO4
5
1_555
96
P 43 21 2