0.011601 0.000000 0.000000 0.000000 0.011601 0.000000 0.000000 0.000000 0.005386 0.00000 0.00000 0.00000 Pancera, M. Louder, R. Mclellan, J.S. KWong, P.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 86.196 86.196 185.676 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 0028-0836 480 336 343 10.1038/nature10696 22113616 Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9. 2011 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-08-15 MAR CCD 165 mm SI 111 SINGLE WAVELENGTH M x-ray 1 1.00 1.0 22-BM APS 1.00 SYNCHROTRON APS BEAMLINE 22-BM 25546.404 CH04 Heavy chain 1 man polymer 23674.324 CH02 Light chain 1 man polymer 18.015 water 38 nat water no no EVQLVESGGGLIRPGGSLRLSCKGSGFIFENFGFGWVRQGPGKGLEWVSGTNWNGGDSRYGDSVKGRFTISRDNSNNFVY LQMNSLRPEDTAIYYCARGTDYTIDDQGIRYQGSGTFWYFDVWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK EVQLVESGGGLIRPGGSLRLSCKGSGFIFENFGFGWVRQGPGKGLEWVSGTNWNGGDSRYGDSVKGRFTISRDNSNNFVY LQMNSLRPEDTAIYYCARGTDYTIDDQGIRYQGSGTFWYFDVWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK H polypeptide(L) no no EIVLTQSPATLSVSPGERATLSCRASQNVHPRYFAWYQQKRGQSPRLLIHSGSTRAAGIADRFSGGGSGMHFTLTITRVE PEDFAVYFCQQYGGSPYTFGQGTRVELRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC EIVLTQSPATLSVSPGERATLSCRASQNVHPRYFAWYQQKRGQSPRLLIHSGSTRAAGIADRFSGGGSGMHFTLTITRVE PEDFAVYFCQQYGGSPYTFGQGTRVELRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC L polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human human sample 9606 Homo sapiens 9606 Homo sapiens human human sample 9606 Homo sapiens 9606 Homo sapiens 1 3.50 64.89 VAPOR DIFFUSION, HANGING DROP 6.5 15% PEG 3350, 9% 2-Methyl-2,4-pentanediol, 0.1M Li2SO4, 0.1M Imidazole pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 repository Initial release Database references 1 0 2011-11-30 1 1 2011-12-21 RCSB Y RCSB 2011-10-07 REL REL HOH water HOH 8 3 HOH HOH 219 H HOH 10 3 HOH HOH 220 H HOH 13 3 HOH HOH 221 H HOH 14 3 HOH HOH 222 H HOH 17 3 HOH HOH 223 H HOH 21 3 HOH HOH 224 H HOH 24 3 HOH HOH 225 H HOH 27 3 HOH HOH 226 H HOH 28 3 HOH HOH 227 H HOH 29 3 HOH HOH 228 H HOH 30 3 HOH HOH 229 H HOH 34 3 HOH HOH 230 H HOH 36 3 HOH HOH 231 H HOH 37 3 HOH HOH 232 H HOH 38 3 HOH HOH 233 H HOH 40 3 HOH HOH 234 H HOH 41 3 HOH HOH 235 H HOH 1 3 HOH HOH 215 L HOH 2 3 HOH HOH 216 L HOH 3 3 HOH HOH 217 L HOH 4 3 HOH HOH 218 L HOH 5 3 HOH HOH 219 L HOH 6 3 HOH HOH 220 L HOH 7 3 HOH HOH 221 L HOH 9 3 HOH HOH 222 L HOH 11 3 HOH HOH 223 L HOH 12 3 HOH HOH 224 L HOH 15 3 HOH HOH 225 L HOH 18 3 HOH HOH 226 L HOH 19 3 HOH HOH 227 L HOH 20 3 HOH HOH 228 L HOH 22 3 HOH HOH 229 L HOH 23 3 HOH HOH 230 L HOH 25 3 HOH HOH 231 L HOH 31 3 HOH HOH 232 L HOH 32 3 HOH HOH 233 L HOH 33 3 HOH HOH 234 L HOH 35 3 HOH HOH 235 L GLU 1 n 1 GLU 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H VAL 5 n 5 VAL 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H GLY 9 n 9 GLY 9 H GLY 10 n 10 GLY 10 H LEU 11 n 11 LEU 11 H ILE 12 n 12 ILE 12 H ARG 13 n 13 ARG 13 H PRO 14 n 14 PRO 14 H GLY 15 n 15 GLY 15 H GLY 16 n 16 GLY 16 H SER 17 n 17 SER 17 H LEU 18 n 18 LEU 18 H ARG 19 n 19 ARG 19 H LEU 20 n 20 LEU 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H LYS 23 n 23 LYS 23 H GLY 24 n 24 GLY 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H ILE 28 n 28 ILE 28 H PHE 29 n 29 PHE 29 H GLU 30 n 30 GLU 30 H ASN 31 n 31 ASN 31 H PHE 32 n 32 PHE 32 H GLY 33 n 33 GLY 33 H PHE 34 n 34 PHE 34 H GLY 35 n 35 GLY 35 H TRP 36 n 36 TRP 36 H VAL 37 n 37 VAL 37 H ARG 38 n 38 ARG 38 H GLN 39 n 39 GLN 39 H GLY 40 n 40 GLY 40 H PRO 41 n 41 PRO 41 H GLY 42 n 42 GLY 42 H LYS 43 n 43 LYS 43 H GLY 44 n 44 GLY 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H VAL 48 n 48 VAL 48 H SER 49 n 49 SER 49 H GLY 50 n 50 GLY 50 H THR 51 n 51 THR 51 H ASN 52 n 52 ASN 52 H TRP 52 n 53 A TRP 52 H ASN 53 n 54 ASN 53 H GLY 54 n 55 GLY 54 H GLY 55 n 56 GLY 55 H ASP 56 n 57 ASP 56 H SER 57 n 58 SER 57 H ARG 58 n 59 ARG 58 H TYR 59 n 60 TYR 59 H GLY 60 n 61 GLY 60 H ASP 61 n 62 ASP 61 H SER 62 n 63 SER 62 H VAL 63 n 64 VAL 63 H LYS 64 n 65 LYS 64 H GLY 65 n 66 GLY 65 H ARG 66 n 67 ARG 66 H PHE 67 n 68 PHE 67 H THR 68 n 69 THR 68 H ILE 69 n 70 ILE 69 H SER 70 n 71 SER 70 H ARG 71 n 72 ARG 71 H ASP 72 n 73 ASP 72 H ASN 73 n 74 ASN 73 H SER 74 n 75 SER 74 H ASN 75 n 76 ASN 75 H ASN 76 n 77 ASN 76 H PHE 77 n 78 PHE 77 H VAL 78 n 79 VAL 78 H TYR 79 n 80 TYR 79 H LEU 80 n 81 LEU 80 H GLN 81 n 82 GLN 81 H MET 82 n 83 MET 82 H ASN 82 n 84 A ASN 82 H SER 82 n 85 B SER 82 H LEU 82 n 86 C LEU 82 H ARG 83 n 87 ARG 83 H PRO 84 n 88 PRO 84 H GLU 85 n 89 GLU 85 H ASP 86 n 90 ASP 86 H THR 87 n 91 THR 87 H ALA 88 n 92 ALA 88 H ILE 89 n 93 ILE 89 H TYR 90 n 94 TYR 90 H TYR 91 n 95 TYR 91 H CYS 92 n 96 CYS 92 H ALA 93 n 97 ALA 93 H ARG 94 n 98 ARG 94 H GLY 95 n 99 GLY 95 H THR 96 n 100 THR 96 H ASP 97 n 101 ASP 97 H TYR 98 n 102 TYR 98 H THR 99 n 103 THR 99 H ILE 100 n 104 ILE 100 H ASP 100 n 105 A ASP 100 H ASP 100 n 106 B ASP 100 H GLN 100 n 107 C GLN 100 H GLY 100 n 108 D GLY 100 H ILE 100 n 109 E ILE 100 H ARG 100 n 110 F ARG 100 H TYR 100 n 111 G TYR 100 H GLN 100 n 112 H GLN 100 H GLY 100 n 113 I GLY 100 H SER 100 n 114 J SER 100 H GLY 100 n 115 K GLY 100 H THR 100 n 116 L THR 100 H PHE 100 n 117 M PHE 100 H TRP 100 n 118 N TRP 100 H TYR 100 n 119 O TYR 100 H PHE 100 n 120 P PHE 100 H ASP 101 n 121 ASP 101 H VAL 102 n 122 VAL 102 H TRP 103 n 123 TRP 103 H GLY 104 n 124 GLY 104 H ARG 105 n 125 ARG 105 H GLY 106 n 126 GLY 106 H THR 107 n 127 THR 107 H LEU 108 n 128 LEU 108 H VAL 109 n 129 VAL 109 H THR 110 n 130 THR 110 H VAL 111 n 131 VAL 111 H SER 112 n 132 SER 112 H SER 113 n 133 SER 113 H ALA 114 n 134 ALA 114 H SER 115 n 135 SER 115 H THR 116 n 136 THR 116 H LYS 117 n 137 LYS 117 H GLY 118 n 138 GLY 118 H PRO 119 n 139 PRO 119 H SER 120 n 140 SER 120 H VAL 121 n 141 VAL 121 H PHE 122 n 142 PHE 122 H PRO 123 n 143 PRO 123 H LEU 124 n 144 LEU 124 H ALA 125 n 145 ALA 125 H PRO 126 n 146 PRO 126 H n 147 127 H n 148 128 H n 149 129 H n 150 130 H n 151 131 H n 152 132 H GLY 133 n 153 GLY 133 H GLY 134 n 154 GLY 134 H THR 135 n 155 THR 135 H ALA 136 n 156 ALA 136 H ALA 137 n 157 ALA 137 H LEU 138 n 158 LEU 138 H GLY 139 n 159 GLY 139 H CYS 140 n 160 CYS 140 H LEU 141 n 161 LEU 141 H VAL 142 n 162 VAL 142 H LYS 143 n 163 LYS 143 H ASP 144 n 164 ASP 144 H TYR 145 n 165 TYR 145 H PHE 146 n 166 PHE 146 H PRO 147 n 167 PRO 147 H GLU 148 n 168 GLU 148 H PRO 149 n 169 PRO 149 H VAL 150 n 170 VAL 150 H THR 151 n 171 THR 151 H VAL 152 n 172 VAL 152 H SER 153 n 173 SER 153 H TRP 154 n 174 TRP 154 H ASN 155 n 175 ASN 155 H SER 156 n 176 SER 156 H GLY 157 n 177 GLY 157 H ALA 158 n 178 ALA 158 H LEU 159 n 179 LEU 159 H THR 160 n 180 THR 160 H SER 161 n 181 SER 161 H GLY 162 n 182 GLY 162 H VAL 163 n 183 VAL 163 H HIS 164 n 184 HIS 164 H THR 165 n 185 THR 165 H PHE 166 n 186 PHE 166 H PRO 167 n 187 PRO 167 H ALA 168 n 188 ALA 168 H VAL 169 n 189 VAL 169 H LEU 170 n 190 LEU 170 H GLN 171 n 191 GLN 171 H SER 172 n 192 SER 172 H SER 173 n 193 SER 173 H GLY 174 n 194 GLY 174 H LEU 175 n 195 LEU 175 H TYR 176 n 196 TYR 176 H SER 177 n 197 SER 177 H LEU 178 n 198 LEU 178 H SER 179 n 199 SER 179 H SER 180 n 200 SER 180 H VAL 181 n 201 VAL 181 H VAL 182 n 202 VAL 182 H THR 183 n 203 THR 183 H VAL 184 n 204 VAL 184 H PRO 185 n 205 PRO 185 H SER 186 n 206 SER 186 H SER 187 n 207 SER 187 H SER 188 n 208 SER 188 H LEU 189 n 209 LEU 189 H GLY 190 n 210 GLY 190 H THR 191 n 211 THR 191 H GLN 192 n 212 GLN 192 H THR 193 n 213 THR 193 H TYR 194 n 214 TYR 194 H ILE 195 n 215 ILE 195 H CYS 196 n 216 CYS 196 H ASN 197 n 217 ASN 197 H VAL 198 n 218 VAL 198 H ASN 199 n 219 ASN 199 H HIS 200 n 220 HIS 200 H LYS 201 n 221 LYS 201 H PRO 202 n 222 PRO 202 H SER 203 n 223 SER 203 H ASN 204 n 224 ASN 204 H THR 205 n 225 THR 205 H LYS 206 n 226 LYS 206 H VAL 207 n 227 VAL 207 H ASP 208 n 228 ASP 208 H LYS 209 n 229 LYS 209 H LYS 210 n 230 LYS 210 H VAL 211 n 231 VAL 211 H GLU 212 n 232 GLU 212 H PRO 213 n 233 PRO 213 H n 234 214 H n 235 215 H n 236 216 H n 237 217 H n 238 218 H GLU 1 n 1 GLU 1 L ILE 2 n 2 ILE 2 L VAL 3 n 3 VAL 3 L LEU 4 n 4 LEU 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L ALA 9 n 9 ALA 9 L THR 10 n 10 THR 10 L LEU 11 n 11 LEU 11 L SER 12 n 12 SER 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L PRO 15 n 15 PRO 15 L GLY 16 n 16 GLY 16 L GLU 17 n 17 GLU 17 L ARG 18 n 18 ARG 18 L ALA 19 n 19 ALA 19 L THR 20 n 20 THR 20 L LEU 21 n 21 LEU 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L ALA 25 n 25 ALA 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L ASN 27 n 28 A ASN 27 L VAL 28 n 29 VAL 28 L HIS 29 n 30 HIS 29 L PRO 30 n 31 PRO 30 L ARG 31 n 32 ARG 31 L TYR 32 n 33 TYR 32 L PHE 33 n 34 PHE 33 L ALA 34 n 35 ALA 34 L TRP 35 n 36 TRP 35 L TYR 36 n 37 TYR 36 L GLN 37 n 38 GLN 37 L GLN 38 n 39 GLN 38 L LYS 39 n 40 LYS 39 L ARG 40 n 41 ARG 40 L GLY 41 n 42 GLY 41 L GLN 42 n 43 GLN 42 L SER 43 n 44 SER 43 L PRO 44 n 45 PRO 44 L ARG 45 n 46 ARG 45 L LEU 46 n 47 LEU 46 L LEU 47 n 48 LEU 47 L ILE 48 n 49 ILE 48 L HIS 49 n 50 HIS 49 L SER 50 n 51 SER 50 L GLY 51 n 52 GLY 51 L SER 52 n 53 SER 52 L THR 53 n 54 THR 53 L ARG 54 n 55 ARG 54 L ALA 55 n 56 ALA 55 L ALA 56 n 57 ALA 56 L GLY 57 n 58 GLY 57 L ILE 58 n 59 ILE 58 L ALA 59 n 60 ALA 59 L ASP 60 n 61 ASP 60 L ARG 61 n 62 ARG 61 L PHE 62 n 63 PHE 62 L SER 63 n 64 SER 63 L GLY 64 n 65 GLY 64 L GLY 65 n 66 GLY 65 L GLY 66 n 67 GLY 66 L SER 67 n 68 SER 67 L GLY 68 n 69 GLY 68 L MET 69 n 70 MET 69 L HIS 70 n 71 HIS 70 L PHE 71 n 72 PHE 71 L THR 72 n 73 THR 72 L LEU 73 n 74 LEU 73 L THR 74 n 75 THR 74 L ILE 75 n 76 ILE 75 L THR 76 n 77 THR 76 L ARG 77 n 78 ARG 77 L VAL 78 n 79 VAL 78 L GLU 79 n 80 GLU 79 L PRO 80 n 81 PRO 80 L GLU 81 n 82 GLU 81 L ASP 82 n 83 ASP 82 L PHE 83 n 84 PHE 83 L ALA 84 n 85 ALA 84 L VAL 85 n 86 VAL 85 L TYR 86 n 87 TYR 86 L PHE 87 n 88 PHE 87 L CYS 88 n 89 CYS 88 L GLN 89 n 90 GLN 89 L GLN 90 n 91 GLN 90 L TYR 91 n 92 TYR 91 L GLY 92 n 93 GLY 92 L GLY 93 n 94 GLY 93 L SER 94 n 95 SER 94 L PRO 95 n 96 PRO 95 L TYR 96 n 97 TYR 96 L THR 97 n 98 THR 97 L PHE 98 n 99 PHE 98 L GLY 99 n 100 GLY 99 L GLN 100 n 101 GLN 100 L GLY 101 n 102 GLY 101 L THR 102 n 103 THR 102 L ARG 103 n 104 ARG 103 L VAL 104 n 105 VAL 104 L GLU 105 n 106 GLU 105 L LEU 106 n 107 LEU 106 L ARG 107 n 108 ARG 107 L ARG 108 n 109 ARG 108 L THR 109 n 110 THR 109 L VAL 110 n 111 VAL 110 L ALA 111 n 112 ALA 111 L ALA 112 n 113 ALA 112 L PRO 113 n 114 PRO 113 L SER 114 n 115 SER 114 L VAL 115 n 116 VAL 115 L PHE 116 n 117 PHE 116 L ILE 117 n 118 ILE 117 L PHE 118 n 119 PHE 118 L PRO 119 n 120 PRO 119 L PRO 120 n 121 PRO 120 L SER 121 n 122 SER 121 L ASP 122 n 123 ASP 122 L GLU 123 n 124 GLU 123 L GLN 124 n 125 GLN 124 L LEU 125 n 126 LEU 125 L LYS 126 n 127 LYS 126 L SER 127 n 128 SER 127 L GLY 128 n 129 GLY 128 L THR 129 n 130 THR 129 L ALA 130 n 131 ALA 130 L SER 131 n 132 SER 131 L VAL 132 n 133 VAL 132 L VAL 133 n 134 VAL 133 L CYS 134 n 135 CYS 134 L LEU 135 n 136 LEU 135 L LEU 136 n 137 LEU 136 L ASN 137 n 138 ASN 137 L ASN 138 n 139 ASN 138 L PHE 139 n 140 PHE 139 L TYR 140 n 141 TYR 140 L PRO 141 n 142 PRO 141 L ARG 142 n 143 ARG 142 L GLU 143 n 144 GLU 143 L ALA 144 n 145 ALA 144 L LYS 145 n 146 LYS 145 L VAL 146 n 147 VAL 146 L GLN 147 n 148 GLN 147 L TRP 148 n 149 TRP 148 L LYS 149 n 150 LYS 149 L VAL 150 n 151 VAL 150 L ASP 151 n 152 ASP 151 L ASN 152 n 153 ASN 152 L ALA 153 n 154 ALA 153 L LEU 154 n 155 LEU 154 L GLN 155 n 156 GLN 155 L SER 156 n 157 SER 156 L GLY 157 n 158 GLY 157 L ASN 158 n 159 ASN 158 L SER 159 n 160 SER 159 L GLN 160 n 161 GLN 160 L GLU 161 n 162 GLU 161 L SER 162 n 163 SER 162 L VAL 163 n 164 VAL 163 L THR 164 n 165 THR 164 L GLU 165 n 166 GLU 165 L GLN 166 n 167 GLN 166 L ASP 167 n 168 ASP 167 L SER 168 n 169 SER 168 L LYS 169 n 170 LYS 169 L ASP 170 n 171 ASP 170 L SER 171 n 172 SER 171 L THR 172 n 173 THR 172 L TYR 173 n 174 TYR 173 L SER 174 n 175 SER 174 L LEU 175 n 176 LEU 175 L SER 176 n 177 SER 176 L SER 177 n 178 SER 177 L THR 178 n 179 THR 178 L LEU 179 n 180 LEU 179 L THR 180 n 181 THR 180 L LEU 181 n 182 LEU 181 L SER 182 n 183 SER 182 L LYS 183 n 184 LYS 183 L ALA 184 n 185 ALA 184 L ASP 185 n 186 ASP 185 L TYR 186 n 187 TYR 186 L GLU 187 n 188 GLU 187 L LYS 188 n 189 LYS 188 L HIS 189 n 190 HIS 189 L LYS 190 n 191 LYS 190 L VAL 191 n 192 VAL 191 L TYR 192 n 193 TYR 192 L ALA 193 n 194 ALA 193 L CYS 194 n 195 CYS 194 L GLU 195 n 196 GLU 195 L VAL 196 n 197 VAL 196 L THR 197 n 198 THR 197 L HIS 198 n 199 HIS 198 L GLN 199 n 200 GLN 199 L GLY 200 n 201 GLY 200 L LEU 201 n 202 LEU 201 L SER 202 n 203 SER 202 L SER 203 n 204 SER 203 L PRO 204 n 205 PRO 204 L VAL 205 n 206 VAL 205 L THR 206 n 207 THR 206 L LYS 207 n 208 LYS 207 L SER 208 n 209 SER 208 L PHE 209 n 210 PHE 209 L ASN 210 n 211 ASN 210 L ARG 211 n 212 ARG 211 L GLY 212 n 213 GLY 212 L GLU 213 n 214 GLU 213 L n 215 214 L 2.8921 0.9892 -1.7529 2.2397 -0.1564 4.4699 0.2584 -0.3656 0.2635 0.4346 -0.2398 -0.1915 -0.5175 0.3954 0.0079 0.4469 -0.1340 -0.0249 0.4855 -0.0063 0.3164 refined 15.3142 27.1028 -25.6212 X-RAY DIFFRACTION 1.3346 0.2737 -0.6334 7.6155 1.7049 2.8898 -0.2541 -0.2069 -0.0735 0.1734 0.3910 -0.1396 0.3528 0.0518 -0.0848 0.4525 0.0980 -0.0350 0.5098 0.0279 0.3643 refined -5.2691 1.0016 -13.5926 X-RAY DIFFRACTION 2.9817 3.0876 0.1454 5.6597 0.2843 1.7973 -0.0887 0.2107 -0.1344 -0.0352 0.0815 -0.2022 -0.0443 0.3084 0.0173 0.3759 0.0120 0.0257 0.4068 -0.0132 0.2599 refined 16.0452 18.7733 -45.8100 X-RAY DIFFRACTION 0.3601 0.8000 -0.0718 1.8365 -0.0236 0.4971 -0.1068 -0.1409 0.1677 -0.2568 0.0933 0.2399 0.0449 -0.3230 -0.0001 0.4235 0.0722 -0.0326 0.6173 -0.0322 0.5156 refined -13.6428 3.7583 -27.7743 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain L and resid 1:110 X-RAY DIFFRACTION 2 chain L and resid 111:214 X-RAY DIFFRACTION 3 chain H and resid 1:134 X-RAY DIFFRACTION 4 chain H and resid 135:233 author_and_software_defined_assembly PISA 2 dimeric 3310 -24 20070 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H N GLN 3 A N GLN 3 H O SER 25 A O SER 25 H N LEU 20 A N LEU 20 H O LEU 80 A O LEU 81 H O TYR 79 A O TYR 80 H N SER 70 A N SER 71 H N ILE 12 A N ILE 12 H O THR 110 A O THR 130 H O THR 107 A O THR 127 H N TYR 90 A N TYR 94 H O TYR 91 A O TYR 95 H N VAL 37 A N VAL 37 H N PHE 34 A N PHE 34 H O THR 51 A O THR 51 H N GLY 50 A N GLY 50 H O ARG 58 A O ARG 59 H N ILE 12 A N ILE 12 H O THR 110 A O THR 130 H O THR 107 A O THR 127 H N TYR 90 A N TYR 94 H N ARG 94 A N ARG 98 H O VAL 102 A O VAL 122 H N THR 99 A N THR 103 G H O TYR 100 A O TYR 111 H N PHE 122 A N PHE 142 H O LEU 141 A O LEU 161 H N ALA 136 A N ALA 156 H O VAL 184 A O VAL 204 H O VAL 181 A O VAL 201 H N HIS 164 A N HIS 184 H N PHE 122 A N PHE 142 H O LEU 141 A O LEU 161 H N ALA 136 A N ALA 156 H O VAL 184 A O VAL 204 H O SER 177 A O SER 197 H N VAL 169 A N VAL 189 H N SER 153 A N SER 173 H O ASN 197 A O ASN 217 H N HIS 200 A N HIS 220 H O THR 205 A O THR 225 L N THR 5 B N THR 5 L O ARG 24 B O ARG 24 L N LEU 21 B N LEU 21 L O LEU 73 B O LEU 74 L N VAL 13 B N VAL 13 L O GLU 105 B O GLU 106 L O THR 102 B O THR 103 L N TYR 86 B N TYR 87 L O GLN 89 B O GLN 90 L N ALA 34 B N ALA 35 L N TRP 35 B N TRP 36 L O LEU 47 B O LEU 48 L N HIS 49 B N HIS 50 L O THR 53 B O THR 54 L N VAL 13 B N VAL 13 L O GLU 105 B O GLU 106 L O THR 102 B O THR 103 L N TYR 86 B N TYR 87 L N GLN 90 B N GLN 91 L O THR 97 B O THR 98 L N PHE 116 B N PHE 117 L O LEU 135 B O LEU 136 L N LEU 136 B N LEU 137 L O LEU 175 B O LEU 176 L O SER 176 B O SER 177 L N SER 162 B N SER 163 L O ALA 153 B O ALA 154 L N VAL 150 B N VAL 151 L N GLN 147 B N GLN 148 L O GLU 195 B O GLU 196 L N VAL 196 B N VAL 197 L O VAL 205 B O VAL 206 1 H SER 127 A SER 147 1 Y 1 H SER 128 A SER 148 1 Y 1 H LYS 129 A LYS 149 1 Y 1 H SER 130 A SER 150 1 Y 1 H THR 131 A THR 151 1 Y 1 H SER 132 A SER 152 1 Y 1 H LYS 214 A LYS 234 1 Y 1 H SER 215 A SER 235 1 Y 1 H CYS 216 A CYS 236 1 Y 1 H ASP 217 A ASP 237 1 Y 1 H LYS 218 A LYS 238 1 Y 1 L CYS 214 B CYS 215 1 Y J 1 H SER 100 -109.07 76.04 1 H ASP 144 60.71 78.80 1 H THR 191 -107.42 -74.14 1 L TYR 91 -141.98 26.53 1 L ASN 138 52.17 86.64 1 L ASN 152 70.95 -29.97 4.5086 0.0000 -0.0000 4.5086 -0.0000 -9.0172 0.2680 0.2214 0.2237 2.893 30.475 811 16038 15976 5.08 97.86 0.83 1 1.33 MOLECULAR REPLACEMENT 28.08 0.86 1.10 ML FLAT BULK SOLVENT MODEL 26.387 0.306 2.893 30.475 38 3419 0 0 3381 0.003 3482 0.722 4727 11.396 1245 0.048 512 0.004 616 0.3497 0.2900 3.0741 135 2331 93.00 0.2722 0.2624 3.3112 130 2522 99.00 0.2826 0.2312 3.6439 139 2512 99.00 0.2504 0.2119 4.1701 140 2529 99.00 0.2220 0.1775 5.2495 117 2577 98.00 0.2837 0.2325 30.4766 150 2694 98.00 2.9 50 3U4B 29046 16038 1 2.90 3.0 1 data collection HKL-2000 phasing PHASES refinement PHENIX (phenix.refine: 1.7.2_869) data reduction HKL-2000 data scaling HKL-2000 CH04 Heavy chain, CH02 Light chain CH04H/CH02L Fab P4 1 N N 2 N N 3 N N 3 N N H ILE 28 A ILE 28 HELX_P H PHE 32 A PHE 32 5 1 5 H ARG 83 A ARG 87 HELX_P H THR 87 A THR 91 5 2 5 H SER 156 A SER 176 HELX_P H ALA 158 A ALA 178 5 3 3 H LYS 201 A LYS 221 HELX_P H ASN 204 A ASN 224 5 4 4 L GLU 79 B GLU 80 HELX_P L PHE 83 B PHE 84 5 5 5 L SER 121 B SER 122 HELX_P L LYS 126 B LYS 127 1 6 6 L LYS 183 B LYS 184 HELX_P L LYS 188 B LYS 189 1 7 6 disulf 2.034 H CYS 22 A SG CYS 22 1_555 H CYS 92 A SG CYS 96 1_555 disulf 2.036 H CYS 140 A SG CYS 160 1_555 H CYS 196 A SG CYS 216 1_555 disulf 2.045 L CYS 23 B SG CYS 23 1_555 L CYS 88 B SG CYS 89 1_555 disulf 2.030 L CYS 134 B SG CYS 135 1_555 L CYS 194 B SG CYS 195 1_555 IMMUNE SYSTEM IGG, Immunoglobulin, Immune system, HIV-1, V1V2-directed H PHE 146 A PHE 166 1 H PRO 147 A PRO 167 -2.01 H GLU 148 A GLU 168 1 H PRO 149 A PRO 169 -2.94 L SER 7 B SER 7 1 L PRO 8 B PRO 8 -1.30 L SER 94 B SER 95 1 L PRO 95 B PRO 96 0.42 L TYR 140 B TYR 141 1 L PRO 141 B PRO 142 2.20 3U4B PDB 1 3U4B EVQLVESGGGLIRPGGSLRLSCKGSGFIFENFGFGWVRQGPGKGLEWVSGTNWNGGDSRYGDSVKGRFTISRDNSNNFVY LQMNSLRPEDTAIYYCARGTDYTIDDQGIRYQGSGTFWYFDVWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK 3U4B PDB 2 3U4B EIVLTQSPATLSVSPGERATLSCRASQNVHPRYFAWYQQKRGQSPRLLIHSGSTRAAGIADRFSGGGSGMHFTLTITRVE PEDFAVYFCQQYGGSPYTFGQGTRVELRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 1 218 3U4B 1 218 3U4B H 1 1 238 1 214 3U4B 1 214 3U4B L 2 1 215 4 6 4 2 4 4 3 3 6 4 4 4 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H GLN 3 A GLN 3 H SER 7 A SER 7 H LEU 18 A LEU 18 H SER 25 A SER 25 H PHE 77 A PHE 78 H MET 82 A MET 83 H PHE 67 A PHE 68 H ASP 72 A ASP 73 H GLY 10 A GLY 10 H ILE 12 A ILE 12 H THR 107 A THR 127 H VAL 111 A VAL 131 H ALA 88 A ALA 92 H ARG 94 A ARG 98 H PHE 34 A PHE 34 H GLN 39 A GLN 39 H LEU 45 A LEU 45 H THR 51 A THR 51 H SER 57 A SER 58 H TYR 59 A TYR 60 H GLY 10 A GLY 10 H ILE 12 A ILE 12 H THR 107 A THR 127 H VAL 111 A VAL 131 H ALA 88 A ALA 92 H ARG 94 A ARG 98 H VAL 102 A VAL 122 H TRP 103 A TRP 123 H TYR 98 A TYR 102 H ILE 100 A ILE 104 H ARG 100 A ARG 110 H GLN 100 A GLN 112 F H H SER 120 A SER 140 H LEU 124 A LEU 144 H THR 135 A THR 155 H TYR 145 A TYR 165 H TYR 176 A TYR 196 H PRO 185 A PRO 205 H VAL 163 A VAL 183 H THR 165 A THR 185 H SER 120 A SER 140 H LEU 124 A LEU 144 H THR 135 A THR 155 H TYR 145 A TYR 165 H TYR 176 A TYR 196 H PRO 185 A PRO 205 H VAL 169 A VAL 189 H LEU 170 A LEU 190 H THR 151 A THR 171 H TRP 154 A TRP 174 H TYR 194 A TYR 214 H HIS 200 A HIS 220 H THR 205 A THR 225 H VAL 211 A VAL 231 L LEU 4 B LEU 4 L SER 7 B SER 7 L ALA 19 B ALA 19 L VAL 28 B VAL 29 L PHE 62 B PHE 63 L ILE 75 B ILE 76 L THR 10 B THR 10 L VAL 13 B VAL 13 L THR 102 B THR 103 L LEU 106 B LEU 107 L VAL 85 B VAL 86 L GLN 90 B GLN 91 L PHE 33 B PHE 34 L GLN 38 B GLN 39 L ARG 45 B ARG 46 L HIS 49 B HIS 50 L THR 53 B THR 54 L ARG 54 B ARG 55 L THR 10 B THR 10 L VAL 13 B VAL 13 L THR 102 B THR 103 L LEU 106 B LEU 107 L VAL 85 B VAL 86 L GLN 90 B GLN 91 L THR 97 B THR 98 L PHE 98 B PHE 99 L SER 114 B SER 115 L PHE 118 B PHE 119 L THR 129 B THR 130 L PHE 139 B PHE 140 L TYR 173 B TYR 174 L SER 182 B SER 183 L SER 159 B SER 160 L VAL 163 B VAL 164 L ALA 153 B ALA 154 L LEU 154 B LEU 155 L LYS 145 B LYS 146 L VAL 150 B VAL 151 L VAL 191 B VAL 192 L THR 197 B THR 198 L VAL 205 B VAL 206 L ASN 210 B ASN 211 96 P 43 21 2