0.011472
0.000000
0.000000
0.000000
0.011472
0.000000
0.000000
0.000000
0.012349
0.00000
0.00000
0.00000
Shen, Y.
Lin, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
87.172
87.172
80.980
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C4 H10 O2 S2
154.251
(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
N
N
58
R
C
N
59
N
C
N
60
N
O
N
61
N
C
N
62
N
S
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
S
N
72
N
C
N
73
S
C
N
74
N
O
N
75
S
C
N
76
N
O
N
77
N
C
N
78
N
S
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
sing
Y
142
N
doub
Y
143
N
doub
N
144
N
sing
Y
145
N
sing
N
146
N
sing
Y
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
Y
249
N
doub
Y
250
N
sing
Y
251
N
sing
N
252
N
sing
Y
253
N
doub
N
254
N
sing
Y
255
N
doub
N
256
N
sing
Y
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
Y
318
N
doub
Y
319
N
sing
Y
320
N
sing
N
321
N
sing
Y
322
N
doub
Y
323
N
sing
Y
324
N
sing
N
325
N
sing
Y
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
US
Plos One
1932-6203
7
e34202
e34202
10.1371/journal.pone.0034202
22485159
Structural Insights into TIR Domain Specificity of the Bridging Adaptor Mal in TLR4 Signaling
2012
10.2210/pdb3ub4/pdb
pdb_00003ub4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-06-25
ADSC QUANTUM 315r
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
BL17U
SSRF
0.9792
SYNCHROTRON
SSRF BEAMLINE BL17U
15996.239
Toll/interleukin-1 receptor domain-containing adapter protein
TIR domain, UNP residues 78-221
1
man
polymer
154.251
(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
1
syn
non-polymer
18.015
water
2
nat
water
Mal, TIR domain-containing adapter protein, Adaptor protein Wyatt, MyD88 adapter-like protein
no
no
GPGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP
WCKYQMLQALTEAPGAEGCTIPLLLGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS
GPGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP
WCKYQMLQALTEAPGAEGCTIPLLLGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
TIRAP, MAL
9606
Homo sapiens
562
Escherichia coli
plasmid
1
4.81
74.42
VAPOR DIFFUSION, HANGING DROP
8.0
0.1M Tris, 12-15% Glycerol, 0.2-0.3M sodium chloride, 10mM DTT, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-05-16
1
1
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2011-10-23
REL
REL
DTV
(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
HOH
water
THE SEQUENCE IS BASED ON REFERENCE 7 (AND 13 ETC.) OF DATABASE UNIPROTKB/SWISS-PROT P58753 (TIRAP_HUMAN). RESIDUE S180L IS A NATURAL VARIANT.
3UB2
PDB ENTRY 3UB2
PDB
experimental model
DTT
1
2
DTV
DTV
1
A
HOH
2
3
HOH
HOH
2
A
HOH
1
3
HOH
HOH
222
A
n
1
76
A
n
2
77
A
n
3
78
A
SER
79
n
4
SER
79
A
SER
80
n
5
SER
80
A
ARG
81
n
6
ARG
81
A
TRP
82
n
7
TRP
82
A
SER
83
n
8
SER
83
A
LYS
84
n
9
LYS
84
A
ASP
85
n
10
ASP
85
A
TYR
86
n
11
TYR
86
A
ASP
87
n
12
ASP
87
A
VAL
88
n
13
VAL
88
A
CYS
89
n
14
CYS
89
A
VAL
90
n
15
VAL
90
A
CYS
91
n
16
CYS
91
A
HIS
92
n
17
HIS
92
A
SER
93
n
18
SER
93
A
GLU
94
n
19
GLU
94
A
GLU
95
n
20
GLU
95
A
ASP
96
n
21
ASP
96
A
LEU
97
n
22
LEU
97
A
VAL
98
n
23
VAL
98
A
ALA
99
n
24
ALA
99
A
ALA
100
n
25
ALA
100
A
GLN
101
n
26
GLN
101
A
ASP
102
n
27
ASP
102
A
LEU
103
n
28
LEU
103
A
VAL
104
n
29
VAL
104
A
SER
105
n
30
SER
105
A
TYR
106
n
31
TYR
106
A
LEU
107
n
32
LEU
107
A
GLU
108
n
33
GLU
108
A
GLY
109
n
34
GLY
109
A
n
35
110
A
n
36
111
A
n
37
112
A
n
38
113
A
n
39
114
A
n
40
115
A
n
41
116
A
n
42
117
A
n
43
118
A
n
44
119
A
n
45
120
A
n
46
121
A
n
47
122
A
n
48
123
A
n
49
124
A
n
50
125
A
n
51
126
A
n
52
127
A
ALA
128
n
53
ALA
128
A
ILE
129
n
54
ILE
129
A
VAL
130
n
55
VAL
130
A
SER
131
n
56
SER
131
A
GLU
132
n
57
GLU
132
A
LEU
133
n
58
LEU
133
A
CYS
134
n
59
CYS
134
A
GLN
135
n
60
GLN
135
A
ALA
136
n
61
ALA
136
A
LEU
137
n
62
LEU
137
A
SER
138
n
63
SER
138
A
SER
139
n
64
SER
139
A
SER
140
n
65
SER
140
A
HIS
141
n
66
HIS
141
A
CYS
142
n
67
CYS
142
A
ARG
143
n
68
ARG
143
A
VAL
144
n
69
VAL
144
A
LEU
145
n
70
LEU
145
A
LEU
146
n
71
LEU
146
A
ILE
147
n
72
ILE
147
A
THR
148
n
73
THR
148
A
PRO
149
n
74
PRO
149
A
GLY
150
n
75
GLY
150
A
PHE
151
n
76
PHE
151
A
LEU
152
n
77
LEU
152
A
GLN
153
n
78
GLN
153
A
ASP
154
n
79
ASP
154
A
PRO
155
n
80
PRO
155
A
TRP
156
n
81
TRP
156
A
CYS
157
n
82
CYS
157
A
LYS
158
n
83
LYS
158
A
TYR
159
n
84
TYR
159
A
GLN
160
n
85
GLN
160
A
MET
161
n
86
MET
161
A
LEU
162
n
87
LEU
162
A
GLN
163
n
88
GLN
163
A
ALA
164
n
89
ALA
164
A
LEU
165
n
90
LEU
165
A
THR
166
n
91
THR
166
A
GLU
167
n
92
GLU
167
A
ALA
168
n
93
ALA
168
A
PRO
169
n
94
PRO
169
A
GLY
170
n
95
GLY
170
A
ALA
171
n
96
ALA
171
A
GLU
172
n
97
GLU
172
A
GLY
173
n
98
GLY
173
A
CYS
174
n
99
CYS
174
A
THR
175
n
100
THR
175
A
ILE
176
n
101
ILE
176
A
PRO
177
n
102
PRO
177
A
LEU
178
n
103
LEU
178
A
LEU
179
n
104
LEU
179
A
LEU
180
n
105
LEU
180
A
GLY
181
n
106
GLY
181
A
LEU
182
n
107
LEU
182
A
SER
183
n
108
SER
183
A
ARG
184
n
109
ARG
184
A
ALA
185
n
110
ALA
185
A
ALA
186
n
111
ALA
186
A
TYR
187
n
112
TYR
187
A
PRO
188
n
113
PRO
188
A
PRO
189
n
114
PRO
189
A
GLU
190
n
115
GLU
190
A
LEU
191
n
116
LEU
191
A
ARG
192
n
117
ARG
192
A
PHE
193
n
118
PHE
193
A
MET
194
n
119
MET
194
A
TYR
195
n
120
TYR
195
A
TYR
196
n
121
TYR
196
A
VAL
197
n
122
VAL
197
A
ASP
198
n
123
ASP
198
A
GLY
199
n
124
GLY
199
A
ARG
200
n
125
ARG
200
A
GLY
201
n
126
GLY
201
A
PRO
202
n
127
PRO
202
A
ASP
203
n
128
ASP
203
A
GLY
204
n
129
GLY
204
A
GLY
205
n
130
GLY
205
A
PHE
206
n
131
PHE
206
A
ARG
207
n
132
ARG
207
A
GLN
208
n
133
GLN
208
A
VAL
209
n
134
VAL
209
A
LYS
210
n
135
LYS
210
A
GLU
211
n
136
GLU
211
A
ALA
212
n
137
ALA
212
A
VAL
213
n
138
VAL
213
A
MET
214
n
139
MET
214
A
ARG
215
n
140
ARG
215
A
TYR
216
n
141
TYR
216
A
LEU
217
n
142
LEU
217
A
GLN
218
n
143
GLN
218
A
THR
219
n
144
THR
219
A
LEU
220
n
145
LEU
220
A
SER
221
n
146
SER
221
A
author_and_software_defined_assembly
PISA
2
dimeric
2150
-23
12820
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
132
A
O
GLU
57
A
N
VAL
90
A
N
VAL
15
A
N
CYS
91
A
N
CYS
16
A
O
VAL
144
A
O
VAL
69
A
N
LEU
145
A
N
LEU
70
A
O
LEU
178
A
O
LEU
103
A
N
PRO
177
A
N
PRO
102
A
O
VAL
197
A
O
VAL
122
1
A
GLY
76
A
GLY
1
1
Y
1
A
PRO
77
A
PRO
2
1
Y
1
A
GLY
78
A
GLY
3
1
Y
1
A
SER
110
A
SER
35
1
Y
1
A
THR
111
A
THR
36
1
Y
1
A
ALA
112
A
ALA
37
1
Y
1
A
SER
113
A
SER
38
1
Y
1
A
LEU
114
A
LEU
39
1
Y
1
A
ARG
115
A
ARG
40
1
Y
1
A
CYS
116
A
CYS
41
1
Y
1
A
PHE
117
A
PHE
42
1
Y
1
A
LEU
118
A
LEU
43
1
Y
1
A
GLN
119
A
GLN
44
1
Y
1
A
LEU
120
A
LEU
45
1
Y
1
A
ARG
121
A
ARG
46
1
Y
1
A
ASP
122
A
ASP
47
1
Y
1
A
ALA
123
A
ALA
48
1
Y
1
A
THR
124
A
THR
49
1
Y
1
A
PRO
125
A
PRO
50
1
Y
1
A
GLY
126
A
GLY
51
1
Y
1
A
GLY
127
A
GLY
52
1
Y
1
A
ASP
154
-47.73
108.51
1
A
THR
166
-44.61
-72.08
1
A
ALA
168
-167.70
-166.18
1
A
PRO
169
-19.67
93.79
1
A
ALA
171
107.03
-17.07
1
A
PRO
189
-38.05
-35.07
1
A
THR
219
-69.78
9.73
protein_rep.param
protein.top
dna-rna_rep.param
dna-rna.top
water_rep.param
water.top
ion.param
ion.top
carbohydrate.param
carbohydrate.top
dtt.param
dtt.top
70.7
-6.57
0.00
0.00
-6.57
0.00
13.14
BULK SOLVENT MODEL USED
0.254
0.015
0.226
0.227
0.226
3.10
38.99
307
6063
6033
5.1
99.9
RANDOM
993482.23
0.000000
1
RESTRAINED
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 3UB2
Engh & Huber
FLAT MODEL
44.4935
0.36
0.43
0.38
5.00
0.43
0.51
3.10
38.99
2
983
8
0
973
0.009
1.2
23.4
4.93
1.33
1.50
2.42
2.00
1.49
2.00
2.42
2.50
0.337
0.053
0.314
3.29
41
927
6
4.2
99.8
3.1
50
3UB4
6063
2.0
2.0
1
90.0
3.10
3.21
1
99.8
data collection
ADSC
Quantum
phasing
PHASES
refinement
CNS
1.3
data reduction
HKL-2000
data scaling
HKL-2000
S180L variant of TIR domain of Mal/TIRAP
1
N
N
2
N
N
3
N
N
A
ASP
96
A
ASP
21
HELX_P
A
GLY
109
A
GLY
34
1
1
14
A
THR
148
A
THR
73
HELX_P
A
ASP
154
A
ASP
79
1
2
7
A
ASP
154
A
ASP
79
HELX_P
A
GLU
167
A
GLU
92
1
3
14
A
PRO
188
A
PRO
113
HELX_P
A
MET
194
A
MET
119
5
4
7
A
GLY
201
A
GLY
126
HELX_P
A
GLY
204
A
GLY
129
5
5
4
A
GLY
205
A
GLY
130
HELX_P
A
THR
219
A
THR
144
1
6
15
disulf
2.042
A
CYS
89
A
SG
CYS
14
1_555
A
CYS
134
A
SG
CYS
59
1_555
disulf
2.050
A
CYS
142
A
SG
CYS
67
1_555
A
CYS
174
A
SG
CYS
99
1_555
IMMUNE SYSTEM
TIR domain, TLRs adaptor, IMMUNE SYSTEM
TIRAP_HUMAN
UNP
1
78
P58753
GSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC
KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS
78
221
3UB4
78
221
P58753
A
1
3
146
1
expression tag
GLY
76
3UB4
A
P58753
UNP
1
1
expression tag
PRO
77
3UB4
A
P58753
UNP
2
1
SER
SEE REMARK 999
LEU
180
3UB4
A
P58753
UNP
180
105
5
parallel
parallel
parallel
parallel
A
SER
131
A
SER
56
A
LEU
133
A
LEU
58
A
TYR
86
A
TYR
11
A
HIS
92
A
HIS
17
A
SER
140
A
SER
65
A
ILE
147
A
ILE
72
A
CYS
174
A
CYS
99
A
LEU
179
A
LEU
104
A
VAL
197
A
VAL
122
A
ASP
198
A
ASP
123
BINDING SITE FOR RESIDUE DTV A 1
A
DTV
1
Software
6
A
CYS
91
A
CYS
16
6
1_555
A
HIS
92
A
HIS
17
6
1_555
A
SER
93
A
SER
18
6
1_555
A
CYS
134
A
CYS
59
6
1_555
A
TRP
156
A
TRP
81
6
1_555
A
CYS
157
A
CYS
82
6
1_555
96
P 43 21 2