0.011472 0.000000 0.000000 0.000000 0.011472 0.000000 0.000000 0.000000 0.012349 0.00000 0.00000 0.00000 Shen, Y. Lin, Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 87.172 87.172 80.980 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C4 H10 O2 S2 154.251 (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N O N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 R C N 59 N C N 60 N O N 61 N C N 62 N S N 63 N O N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N S N 72 N C N 73 S C N 74 N O N 75 S C N 76 N O N 77 N C N 78 N S N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing Y 141 N sing Y 142 N doub Y 143 N doub N 144 N sing Y 145 N sing N 146 N sing Y 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing Y 249 N doub Y 250 N sing Y 251 N sing N 252 N sing Y 253 N doub N 254 N sing Y 255 N doub N 256 N sing Y 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing Y 318 N doub Y 319 N sing Y 320 N sing N 321 N sing Y 322 N doub Y 323 N sing Y 324 N sing N 325 N sing Y 326 N sing Y 327 N doub N 328 N sing Y 329 N doub N 330 N sing Y 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing Y 346 N doub Y 347 N sing Y 348 N sing N 349 N sing Y 350 N doub N 351 N sing Y 352 N doub N 353 N sing Y 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing US Plos One 1932-6203 7 e34202 e34202 10.1371/journal.pone.0034202 22485159 Structural Insights into TIR Domain Specificity of the Bridging Adaptor Mal in TLR4 Signaling 2012 10.2210/pdb3ub4/pdb pdb_00003ub4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-06-25 ADSC QUANTUM 315r Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 0.9792 1.0 BL17U SSRF 0.9792 SYNCHROTRON SSRF BEAMLINE BL17U 15996.239 Toll/interleukin-1 receptor domain-containing adapter protein TIR domain, UNP residues 78-221 1 man polymer 154.251 (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL 1 syn non-polymer 18.015 water 2 nat water Mal, TIR domain-containing adapter protein, Adaptor protein Wyatt, MyD88 adapter-like protein no no GPGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP WCKYQMLQALTEAPGAEGCTIPLLLGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS GPGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP WCKYQMLQALTEAPGAEGCTIPLLLGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample TIRAP, MAL 9606 Homo sapiens 562 Escherichia coli plasmid 1 4.81 74.42 VAPOR DIFFUSION, HANGING DROP 8.0 0.1M Tris, 12-15% Glycerol, 0.2-0.3M sodium chloride, 10mM DTT, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K 298.0 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2012-05-16 1 1 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2011-10-23 REL REL DTV (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL HOH water THE SEQUENCE IS BASED ON REFERENCE 7 (AND 13 ETC.) OF DATABASE UNIPROTKB/SWISS-PROT P58753 (TIRAP_HUMAN). RESIDUE S180L IS A NATURAL VARIANT. 3UB2 PDB ENTRY 3UB2 PDB experimental model DTT 1 2 DTV DTV 1 A HOH 2 3 HOH HOH 2 A HOH 1 3 HOH HOH 222 A n 1 76 A n 2 77 A n 3 78 A SER 79 n 4 SER 79 A SER 80 n 5 SER 80 A ARG 81 n 6 ARG 81 A TRP 82 n 7 TRP 82 A SER 83 n 8 SER 83 A LYS 84 n 9 LYS 84 A ASP 85 n 10 ASP 85 A TYR 86 n 11 TYR 86 A ASP 87 n 12 ASP 87 A VAL 88 n 13 VAL 88 A CYS 89 n 14 CYS 89 A VAL 90 n 15 VAL 90 A CYS 91 n 16 CYS 91 A HIS 92 n 17 HIS 92 A SER 93 n 18 SER 93 A GLU 94 n 19 GLU 94 A GLU 95 n 20 GLU 95 A ASP 96 n 21 ASP 96 A LEU 97 n 22 LEU 97 A VAL 98 n 23 VAL 98 A ALA 99 n 24 ALA 99 A ALA 100 n 25 ALA 100 A GLN 101 n 26 GLN 101 A ASP 102 n 27 ASP 102 A LEU 103 n 28 LEU 103 A VAL 104 n 29 VAL 104 A SER 105 n 30 SER 105 A TYR 106 n 31 TYR 106 A LEU 107 n 32 LEU 107 A GLU 108 n 33 GLU 108 A GLY 109 n 34 GLY 109 A n 35 110 A n 36 111 A n 37 112 A n 38 113 A n 39 114 A n 40 115 A n 41 116 A n 42 117 A n 43 118 A n 44 119 A n 45 120 A n 46 121 A n 47 122 A n 48 123 A n 49 124 A n 50 125 A n 51 126 A n 52 127 A ALA 128 n 53 ALA 128 A ILE 129 n 54 ILE 129 A VAL 130 n 55 VAL 130 A SER 131 n 56 SER 131 A GLU 132 n 57 GLU 132 A LEU 133 n 58 LEU 133 A CYS 134 n 59 CYS 134 A GLN 135 n 60 GLN 135 A ALA 136 n 61 ALA 136 A LEU 137 n 62 LEU 137 A SER 138 n 63 SER 138 A SER 139 n 64 SER 139 A SER 140 n 65 SER 140 A HIS 141 n 66 HIS 141 A CYS 142 n 67 CYS 142 A ARG 143 n 68 ARG 143 A VAL 144 n 69 VAL 144 A LEU 145 n 70 LEU 145 A LEU 146 n 71 LEU 146 A ILE 147 n 72 ILE 147 A THR 148 n 73 THR 148 A PRO 149 n 74 PRO 149 A GLY 150 n 75 GLY 150 A PHE 151 n 76 PHE 151 A LEU 152 n 77 LEU 152 A GLN 153 n 78 GLN 153 A ASP 154 n 79 ASP 154 A PRO 155 n 80 PRO 155 A TRP 156 n 81 TRP 156 A CYS 157 n 82 CYS 157 A LYS 158 n 83 LYS 158 A TYR 159 n 84 TYR 159 A GLN 160 n 85 GLN 160 A MET 161 n 86 MET 161 A LEU 162 n 87 LEU 162 A GLN 163 n 88 GLN 163 A ALA 164 n 89 ALA 164 A LEU 165 n 90 LEU 165 A THR 166 n 91 THR 166 A GLU 167 n 92 GLU 167 A ALA 168 n 93 ALA 168 A PRO 169 n 94 PRO 169 A GLY 170 n 95 GLY 170 A ALA 171 n 96 ALA 171 A GLU 172 n 97 GLU 172 A GLY 173 n 98 GLY 173 A CYS 174 n 99 CYS 174 A THR 175 n 100 THR 175 A ILE 176 n 101 ILE 176 A PRO 177 n 102 PRO 177 A LEU 178 n 103 LEU 178 A LEU 179 n 104 LEU 179 A LEU 180 n 105 LEU 180 A GLY 181 n 106 GLY 181 A LEU 182 n 107 LEU 182 A SER 183 n 108 SER 183 A ARG 184 n 109 ARG 184 A ALA 185 n 110 ALA 185 A ALA 186 n 111 ALA 186 A TYR 187 n 112 TYR 187 A PRO 188 n 113 PRO 188 A PRO 189 n 114 PRO 189 A GLU 190 n 115 GLU 190 A LEU 191 n 116 LEU 191 A ARG 192 n 117 ARG 192 A PHE 193 n 118 PHE 193 A MET 194 n 119 MET 194 A TYR 195 n 120 TYR 195 A TYR 196 n 121 TYR 196 A VAL 197 n 122 VAL 197 A ASP 198 n 123 ASP 198 A GLY 199 n 124 GLY 199 A ARG 200 n 125 ARG 200 A GLY 201 n 126 GLY 201 A PRO 202 n 127 PRO 202 A ASP 203 n 128 ASP 203 A GLY 204 n 129 GLY 204 A GLY 205 n 130 GLY 205 A PHE 206 n 131 PHE 206 A ARG 207 n 132 ARG 207 A GLN 208 n 133 GLN 208 A VAL 209 n 134 VAL 209 A LYS 210 n 135 LYS 210 A GLU 211 n 136 GLU 211 A ALA 212 n 137 ALA 212 A VAL 213 n 138 VAL 213 A MET 214 n 139 MET 214 A ARG 215 n 140 ARG 215 A TYR 216 n 141 TYR 216 A LEU 217 n 142 LEU 217 A GLN 218 n 143 GLN 218 A THR 219 n 144 THR 219 A LEU 220 n 145 LEU 220 A SER 221 n 146 SER 221 A author_and_software_defined_assembly PISA 2 dimeric 2150 -23 12820 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 132 A O GLU 57 A N VAL 90 A N VAL 15 A N CYS 91 A N CYS 16 A O VAL 144 A O VAL 69 A N LEU 145 A N LEU 70 A O LEU 178 A O LEU 103 A N PRO 177 A N PRO 102 A O VAL 197 A O VAL 122 1 A GLY 76 A GLY 1 1 Y 1 A PRO 77 A PRO 2 1 Y 1 A GLY 78 A GLY 3 1 Y 1 A SER 110 A SER 35 1 Y 1 A THR 111 A THR 36 1 Y 1 A ALA 112 A ALA 37 1 Y 1 A SER 113 A SER 38 1 Y 1 A LEU 114 A LEU 39 1 Y 1 A ARG 115 A ARG 40 1 Y 1 A CYS 116 A CYS 41 1 Y 1 A PHE 117 A PHE 42 1 Y 1 A LEU 118 A LEU 43 1 Y 1 A GLN 119 A GLN 44 1 Y 1 A LEU 120 A LEU 45 1 Y 1 A ARG 121 A ARG 46 1 Y 1 A ASP 122 A ASP 47 1 Y 1 A ALA 123 A ALA 48 1 Y 1 A THR 124 A THR 49 1 Y 1 A PRO 125 A PRO 50 1 Y 1 A GLY 126 A GLY 51 1 Y 1 A GLY 127 A GLY 52 1 Y 1 A ASP 154 -47.73 108.51 1 A THR 166 -44.61 -72.08 1 A ALA 168 -167.70 -166.18 1 A PRO 169 -19.67 93.79 1 A ALA 171 107.03 -17.07 1 A PRO 189 -38.05 -35.07 1 A THR 219 -69.78 9.73 protein_rep.param protein.top dna-rna_rep.param dna-rna.top water_rep.param water.top ion.param ion.top carbohydrate.param carbohydrate.top dtt.param dtt.top 70.7 -6.57 0.00 0.00 -6.57 0.00 13.14 BULK SOLVENT MODEL USED 0.254 0.015 0.226 0.227 0.226 3.10 38.99 307 6063 6033 5.1 99.9 RANDOM 993482.23 0.000000 1 RESTRAINED THROUGHOUT 2.0 MOLECULAR REPLACEMENT PDB ENTRY 3UB2 Engh & Huber FLAT MODEL 44.4935 0.36 0.43 0.38 5.00 0.43 0.51 3.10 38.99 2 983 8 0 973 0.009 1.2 23.4 4.93 1.33 1.50 2.42 2.00 1.49 2.00 2.42 2.50 0.337 0.053 0.314 3.29 41 927 6 4.2 99.8 3.1 50 3UB4 6063 2.0 2.0 1 90.0 3.10 3.21 1 99.8 data collection ADSC Quantum phasing PHASES refinement CNS 1.3 data reduction HKL-2000 data scaling HKL-2000 S180L variant of TIR domain of Mal/TIRAP 1 N N 2 N N 3 N N A ASP 96 A ASP 21 HELX_P A GLY 109 A GLY 34 1 1 14 A THR 148 A THR 73 HELX_P A ASP 154 A ASP 79 1 2 7 A ASP 154 A ASP 79 HELX_P A GLU 167 A GLU 92 1 3 14 A PRO 188 A PRO 113 HELX_P A MET 194 A MET 119 5 4 7 A GLY 201 A GLY 126 HELX_P A GLY 204 A GLY 129 5 5 4 A GLY 205 A GLY 130 HELX_P A THR 219 A THR 144 1 6 15 disulf 2.042 A CYS 89 A SG CYS 14 1_555 A CYS 134 A SG CYS 59 1_555 disulf 2.050 A CYS 142 A SG CYS 67 1_555 A CYS 174 A SG CYS 99 1_555 IMMUNE SYSTEM TIR domain, TLRs adaptor, IMMUNE SYSTEM TIRAP_HUMAN UNP 1 78 P58753 GSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS 78 221 3UB4 78 221 P58753 A 1 3 146 1 expression tag GLY 76 3UB4 A P58753 UNP 1 1 expression tag PRO 77 3UB4 A P58753 UNP 2 1 SER SEE REMARK 999 LEU 180 3UB4 A P58753 UNP 180 105 5 parallel parallel parallel parallel A SER 131 A SER 56 A LEU 133 A LEU 58 A TYR 86 A TYR 11 A HIS 92 A HIS 17 A SER 140 A SER 65 A ILE 147 A ILE 72 A CYS 174 A CYS 99 A LEU 179 A LEU 104 A VAL 197 A VAL 122 A ASP 198 A ASP 123 BINDING SITE FOR RESIDUE DTV A 1 A DTV 1 Software 6 A CYS 91 A CYS 16 6 1_555 A HIS 92 A HIS 17 6 1_555 A SER 93 A SER 18 6 1_555 A CYS 134 A CYS 59 6 1_555 A TRP 156 A TRP 81 6 1_555 A CYS 157 A CYS 82 6 1_555 96 P 43 21 2