0.027293
0.000000
0.000000
0.000000
0.020002
0.000000
0.000000
0.000000
0.018139
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
Partnership for T-Cell Biology (TCELL)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
36.640
49.995
55.130
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a RNA binding domain of poly-U binding splicing factor 60KDa (PUF60) from Homo sapiens at 1.23 A resolution
10.2210/pdb3ue2/pdb
pdb_00003ue2
100
1
KOHZU: Double Crystal Si(111)
CCD
2011-09-09
ADSC QUANTUM 315
Double Crystal Si(111)
MAD
M
x-ray
1
0.9537
1.0
0.9796
1.0
0.9794
1.0
8.2.2
ALS
0.9537,0.9796,0.9794
SYNCHROTRON
ALS BEAMLINE 8.2.2
13527.543
Poly(U)-binding-splicing factor PUF60
RNA binding domain
1
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
189
nat
water
60 kDa poly(U)-binding-splicing factor, FUSE-binding protein-interacting repressor, FBP-interacting repressor, Ro-binding protein 1, RoBP1, Siah-binding protein 1, Siah-BP1
no
yes
GSGSSARH(MSE)V(MSE)QKLLRKQESTV(MSE)VLRN(MSE)VDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGE
EEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
GSGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI
ASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
A
422549
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
BC008875, FIR, PUF60, ROBPI, SIAHBP1
9606
Homo sapiens
562
Escherichia Coli
HK100
Plasmid
SpeedET
1
1.87
34.10
VAPOR DIFFUSION, SITTING DROP
6.0
2.4 M ammonium sulfate, 0.1M MES pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
Partnership for T-Cell Biology
TCELL
PSI:Biology
software
citation_author
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Structure summary
Refinement description
Database references
Database references
Derived calculations
1
0
2011-11-30
1
1
2012-08-29
1
2
2017-11-08
1
3
2018-01-24
1
4
2023-02-01
_software.classification
_software.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2011-10-28
REL
REL
SO4
SULFATE ION
HOH
water
THIS CONSTRUCT (RESIDUES 443-559) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. RESIDUE NUMBERING IS BASED ON ISOFORM 1 OF UNIPROTKB Q9UHX1.
SO4
600
2
SO4
SO4
600
A
SO4
601
2
SO4
SO4
601
A
HOH
602
3
HOH
HOH
602
A
HOH
603
3
HOH
HOH
603
A
HOH
604
3
HOH
HOH
604
A
HOH
605
3
HOH
HOH
605
A
HOH
606
3
HOH
HOH
606
A
HOH
607
3
HOH
HOH
607
A
HOH
608
3
HOH
HOH
608
A
HOH
609
3
HOH
HOH
609
A
HOH
610
3
HOH
HOH
610
A
HOH
611
3
HOH
HOH
611
A
HOH
612
3
HOH
HOH
612
A
HOH
613
3
HOH
HOH
613
A
HOH
614
3
HOH
HOH
614
A
HOH
615
3
HOH
HOH
615
A
HOH
616
3
HOH
HOH
616
A
HOH
617
3
HOH
HOH
617
A
HOH
618
3
HOH
HOH
618
A
HOH
619
3
HOH
HOH
619
A
HOH
620
3
HOH
HOH
620
A
HOH
621
3
HOH
HOH
621
A
HOH
622
3
HOH
HOH
622
A
HOH
623
3
HOH
HOH
623
A
HOH
624
3
HOH
HOH
624
A
HOH
625
3
HOH
HOH
625
A
HOH
626
3
HOH
HOH
626
A
HOH
627
3
HOH
HOH
627
A
HOH
628
3
HOH
HOH
628
A
HOH
629
3
HOH
HOH
629
A
HOH
630
3
HOH
HOH
630
A
HOH
631
3
HOH
HOH
631
A
HOH
632
3
HOH
HOH
632
A
HOH
633
3
HOH
HOH
633
A
HOH
634
3
HOH
HOH
634
A
HOH
635
3
HOH
HOH
635
A
HOH
636
3
HOH
HOH
636
A
HOH
637
3
HOH
HOH
637
A
HOH
638
3
HOH
HOH
638
A
HOH
639
3
HOH
HOH
639
A
HOH
640
3
HOH
HOH
640
A
HOH
641
3
HOH
HOH
641
A
HOH
642
3
HOH
HOH
642
A
HOH
643
3
HOH
HOH
643
A
HOH
644
3
HOH
HOH
644
A
HOH
645
3
HOH
HOH
645
A
HOH
646
3
HOH
HOH
646
A
HOH
647
3
HOH
HOH
647
A
HOH
648
3
HOH
HOH
648
A
HOH
649
3
HOH
HOH
649
A
HOH
650
3
HOH
HOH
650
A
HOH
651
3
HOH
HOH
651
A
HOH
652
3
HOH
HOH
652
A
HOH
653
3
HOH
HOH
653
A
HOH
654
3
HOH
HOH
654
A
HOH
655
3
HOH
HOH
655
A
HOH
656
3
HOH
HOH
656
A
HOH
657
3
HOH
HOH
657
A
HOH
658
3
HOH
HOH
658
A
HOH
659
3
HOH
HOH
659
A
HOH
660
3
HOH
HOH
660
A
HOH
661
3
HOH
HOH
661
A
HOH
662
3
HOH
HOH
662
A
HOH
663
3
HOH
HOH
663
A
HOH
664
3
HOH
HOH
664
A
HOH
665
3
HOH
HOH
665
A
HOH
666
3
HOH
HOH
666
A
HOH
667
3
HOH
HOH
667
A
HOH
668
3
HOH
HOH
668
A
HOH
669
3
HOH
HOH
669
A
HOH
670
3
HOH
HOH
670
A
HOH
671
3
HOH
HOH
671
A
HOH
672
3
HOH
HOH
672
A
HOH
673
3
HOH
HOH
673
A
HOH
674
3
HOH
HOH
674
A
HOH
675
3
HOH
HOH
675
A
HOH
676
3
HOH
HOH
676
A
HOH
677
3
HOH
HOH
677
A
HOH
678
3
HOH
HOH
678
A
HOH
679
3
HOH
HOH
679
A
HOH
680
3
HOH
HOH
680
A
HOH
681
3
HOH
HOH
681
A
HOH
682
3
HOH
HOH
682
A
HOH
683
3
HOH
HOH
683
A
HOH
684
3
HOH
HOH
684
A
HOH
685
3
HOH
HOH
685
A
HOH
686
3
HOH
HOH
686
A
HOH
687
3
HOH
HOH
687
A
HOH
688
3
HOH
HOH
688
A
HOH
689
3
HOH
HOH
689
A
HOH
690
3
HOH
HOH
690
A
HOH
691
3
HOH
HOH
691
A
HOH
692
3
HOH
HOH
692
A
HOH
693
3
HOH
HOH
693
A
HOH
694
3
HOH
HOH
694
A
HOH
695
3
HOH
HOH
695
A
HOH
696
3
HOH
HOH
696
A
HOH
697
3
HOH
HOH
697
A
HOH
698
3
HOH
HOH
698
A
HOH
699
3
HOH
HOH
699
A
HOH
700
3
HOH
HOH
700
A
HOH
701
3
HOH
HOH
701
A
HOH
702
3
HOH
HOH
702
A
HOH
703
3
HOH
HOH
703
A
HOH
704
3
HOH
HOH
704
A
HOH
705
3
HOH
HOH
705
A
HOH
706
3
HOH
HOH
706
A
HOH
707
3
HOH
HOH
707
A
HOH
708
3
HOH
HOH
708
A
HOH
709
3
HOH
HOH
709
A
HOH
710
3
HOH
HOH
710
A
HOH
711
3
HOH
HOH
711
A
HOH
712
3
HOH
HOH
712
A
HOH
713
3
HOH
HOH
713
A
HOH
714
3
HOH
HOH
714
A
HOH
715
3
HOH
HOH
715
A
HOH
716
3
HOH
HOH
716
A
HOH
717
3
HOH
HOH
717
A
HOH
718
3
HOH
HOH
718
A
HOH
719
3
HOH
HOH
719
A
HOH
720
3
HOH
HOH
720
A
HOH
721
3
HOH
HOH
721
A
HOH
722
3
HOH
HOH
722
A
HOH
723
3
HOH
HOH
723
A
HOH
724
3
HOH
HOH
724
A
HOH
725
3
HOH
HOH
725
A
HOH
726
3
HOH
HOH
726
A
HOH
727
3
HOH
HOH
727
A
HOH
728
3
HOH
HOH
728
A
HOH
729
3
HOH
HOH
729
A
HOH
730
3
HOH
HOH
730
A
HOH
731
3
HOH
HOH
731
A
HOH
732
3
HOH
HOH
732
A
HOH
733
3
HOH
HOH
733
A
HOH
734
3
HOH
HOH
734
A
HOH
735
3
HOH
HOH
735
A
HOH
736
3
HOH
HOH
736
A
HOH
737
3
HOH
HOH
737
A
HOH
738
3
HOH
HOH
738
A
HOH
739
3
HOH
HOH
739
A
HOH
740
3
HOH
HOH
740
A
HOH
741
3
HOH
HOH
741
A
HOH
742
3
HOH
HOH
742
A
HOH
743
3
HOH
HOH
743
A
HOH
744
3
HOH
HOH
744
A
HOH
745
3
HOH
HOH
745
A
HOH
746
3
HOH
HOH
746
A
HOH
747
3
HOH
HOH
747
A
HOH
748
3
HOH
HOH
748
A
HOH
749
3
HOH
HOH
749
A
HOH
750
3
HOH
HOH
750
A
HOH
751
3
HOH
HOH
751
A
HOH
752
3
HOH
HOH
752
A
HOH
753
3
HOH
HOH
753
A
HOH
754
3
HOH
HOH
754
A
HOH
755
3
HOH
HOH
755
A
HOH
756
3
HOH
HOH
756
A
HOH
757
3
HOH
HOH
757
A
HOH
758
3
HOH
HOH
758
A
HOH
759
3
HOH
HOH
759
A
HOH
760
3
HOH
HOH
760
A
HOH
761
3
HOH
HOH
761
A
HOH
762
3
HOH
HOH
762
A
HOH
763
3
HOH
HOH
763
A
HOH
764
3
HOH
HOH
764
A
HOH
765
3
HOH
HOH
765
A
HOH
766
3
HOH
HOH
766
A
HOH
767
3
HOH
HOH
767
A
HOH
768
3
HOH
HOH
768
A
HOH
769
3
HOH
HOH
769
A
HOH
770
3
HOH
HOH
770
A
HOH
771
3
HOH
HOH
771
A
HOH
772
3
HOH
HOH
772
A
HOH
773
3
HOH
HOH
773
A
HOH
774
3
HOH
HOH
774
A
HOH
775
3
HOH
HOH
775
A
HOH
776
3
HOH
HOH
776
A
HOH
777
3
HOH
HOH
777
A
HOH
778
3
HOH
HOH
778
A
HOH
779
3
HOH
HOH
779
A
HOH
780
3
HOH
HOH
780
A
HOH
781
3
HOH
HOH
781
A
HOH
782
3
HOH
HOH
782
A
HOH
783
3
HOH
HOH
783
A
HOH
784
3
HOH
HOH
784
A
HOH
785
3
HOH
HOH
785
A
HOH
786
3
HOH
HOH
786
A
HOH
787
3
HOH
HOH
787
A
HOH
788
3
HOH
HOH
788
A
HOH
789
3
HOH
HOH
789
A
HOH
790
3
HOH
HOH
790
A
GLY
0
n
1
GLY
0
A
SER
426
n
2
SER
443
A
GLY
427
n
3
GLY
444
A
SER
428
n
4
SER
445
A
SER
429
n
5
SER
446
A
ALA
430
n
6
ALA
447
A
ARG
431
n
7
ARG
448
A
HIS
432
n
8
HIS
449
A
MSE
433
n
9
MSE
450
A
VAL
434
n
10
VAL
451
A
MSE
435
n
11
MSE
452
A
GLN
436
n
12
GLN
453
A
LYS
437
n
13
LYS
454
A
LEU
438
n
14
LEU
455
A
LEU
439
n
15
LEU
456
A
ARG
440
n
16
ARG
457
A
LYS
441
n
17
LYS
458
A
GLN
442
n
18
GLN
459
A
GLU
443
n
19
GLU
460
A
SER
444
n
20
SER
461
A
THR
445
n
21
THR
462
A
VAL
446
n
22
VAL
463
A
MSE
447
n
23
MSE
464
A
VAL
448
n
24
VAL
465
A
LEU
449
n
25
LEU
466
A
ARG
450
n
26
ARG
467
A
ASN
451
n
27
ASN
468
A
MSE
452
n
28
MSE
469
A
VAL
453
n
29
VAL
470
A
ASP
454
n
30
ASP
471
A
PRO
455
n
31
PRO
472
A
LYS
456
n
32
LYS
473
A
ASP
457
n
33
ASP
474
A
ILE
458
n
34
ILE
475
A
ASP
459
n
35
ASP
476
A
ASP
460
n
36
ASP
477
A
ASP
461
n
37
ASP
478
A
LEU
462
n
38
LEU
479
A
GLU
463
n
39
GLU
480
A
GLY
464
n
40
GLY
481
A
GLU
465
n
41
GLU
482
A
VAL
466
n
42
VAL
483
A
THR
467
n
43
THR
484
A
GLU
468
n
44
GLU
485
A
GLU
469
n
45
GLU
486
A
CYS
470
n
46
CYS
487
A
GLY
471
n
47
GLY
488
A
LYS
472
n
48
LYS
489
A
PHE
473
n
49
PHE
490
A
GLY
474
n
50
GLY
491
A
ALA
475
n
51
ALA
492
A
VAL
476
n
52
VAL
493
A
ASN
477
n
53
ASN
494
A
ARG
478
n
54
ARG
495
A
VAL
479
n
55
VAL
496
A
ILE
480
n
56
ILE
497
A
ILE
481
n
57
ILE
498
A
TYR
482
n
58
TYR
499
A
GLN
483
n
59
GLN
500
A
GLU
484
n
60
GLU
501
A
LYS
485
n
61
LYS
502
A
GLN
486
n
62
GLN
503
A
GLY
487
n
63
GLY
504
A
GLU
488
n
64
GLU
505
A
GLU
489
n
65
GLU
506
A
GLU
490
n
66
GLU
507
A
ASP
491
n
67
ASP
508
A
ALA
492
n
68
ALA
509
A
GLU
493
n
69
GLU
510
A
ILE
494
n
70
ILE
511
A
ILE
495
n
71
ILE
512
A
VAL
496
n
72
VAL
513
A
LYS
497
n
73
LYS
514
A
ILE
498
n
74
ILE
515
A
PHE
499
n
75
PHE
516
A
VAL
500
n
76
VAL
517
A
GLU
501
n
77
GLU
518
A
PHE
502
n
78
PHE
519
A
SER
503
n
79
SER
520
A
ILE
504
n
80
ILE
521
A
ALA
505
n
81
ALA
522
A
SER
506
n
82
SER
523
A
GLU
507
n
83
GLU
524
A
THR
508
n
84
THR
525
A
HIS
509
n
85
HIS
526
A
LYS
510
n
86
LYS
527
A
ALA
511
n
87
ALA
528
A
ILE
512
n
88
ILE
529
A
GLN
513
n
89
GLN
530
A
ALA
514
n
90
ALA
531
A
LEU
515
n
91
LEU
532
A
ASN
516
n
92
ASN
533
A
GLY
517
n
93
GLY
534
A
ARG
518
n
94
ARG
535
A
TRP
519
n
95
TRP
536
A
PHE
520
n
96
PHE
537
A
ALA
521
n
97
ALA
538
A
GLY
522
n
98
GLY
539
A
ARG
523
n
99
ARG
540
A
LYS
524
n
100
LYS
541
A
VAL
525
n
101
VAL
542
A
VAL
526
n
102
VAL
543
A
ALA
527
n
103
ALA
544
A
GLU
528
n
104
GLU
545
A
VAL
529
n
105
VAL
546
A
TYR
530
n
106
TYR
547
A
ASP
531
n
107
ASP
548
A
GLN
532
n
108
GLN
549
A
GLU
533
n
109
GLU
550
A
ARG
534
n
110
ARG
551
A
PHE
535
n
111
PHE
552
A
ASP
536
n
112
ASP
553
A
ASN
537
n
113
ASN
554
A
SER
538
n
114
SER
555
A
ASP
539
n
115
ASP
556
A
LEU
540
n
116
LEU
557
A
SER
541
n
117
SER
558
A
ALA
542
n
118
ALA
559
A
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
450
SELENOMETHIONINE
A
MSE
9
MET
A
MSE
452
SELENOMETHIONINE
A
MSE
11
MET
A
MSE
464
SELENOMETHIONINE
A
MSE
23
MET
A
MSE
469
SELENOMETHIONINE
A
MSE
28
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
497
A
N
ILE
56
A
O
PHE
516
A
O
PHE
75
A
O
VAL
517
A
O
VAL
76
A
N
MSE
464
A
N
MSE
23
A
N
VAL
465
A
N
VAL
24
A
O
GLU
545
A
O
GLU
104
A
N
PHE
537
A
N
PHE
96
A
O
ARG
540
A
O
ARG
99
1
A
CE
LYS
473
A
CE
LYS
32
1
Y
1
A
NZ
LYS
473
A
NZ
LYS
32
1
Y
1
A
A
O
O
HOH
HOH
721
771
2.16
1
A
A
CD
CE
LYS
LYS
514
514
-0.179
0.025
1.508
1.329
N
1
A
A
CB
CG
TRP
TRP
536
536
-0.123
0.018
1.498
1.375
N
1
A
ALA
538
62.26
-121.60
1
A
ALA
538
65.59
-121.60
84.760
16.2176
4.190
-0.6100
0.0000
0.0000
-0.4100
0.0000
1.0200
0.9770
0.9700
1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3.SULFATE (SO4) FROM THE CRYSTALLIZATION SOLUTION HAS BEEN MODELED IN THE SOLVENT STRUCTURE.
0.1601
0.1341
0.1355
1.2300
29.553
1520
29999
5.1000
99.6600
1.000
0.060
1.5200
0.0300
RANDOM
1
THROUGHOUT
0.000
MAD
0.0420
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
1.2300
29.553
189
1131
10
0
932
0.024
0.022
1068
0.003
0.020
752
1.506
1.965
1457
0.926
3.000
1847
5.155
5.000
146
35.323
24.655
58
11.921
15.000
215
13.134
15.000
10
0.108
0.200
158
0.009
0.020
1228
0.002
0.020
221
2.751
2.000
637
1.504
2.000
260
3.855
4.000
1045
5.408
6.000
431
7.405
8.000
398
2.331
3.000
1820
11.822
3.000
195
5.649
3.000
1794
0.2350
0.2210
1.2620
110
2082
2192
20
99.9100
1.23
29.553
3UE2
30048
30048
0.080
1
8.300
3.400
99.800
0.612
1.230
1.260
1.3
7515
2198
0.612
1
3.400
100.000
0.508
1.260
1.300
1.5
7240
2119
0.508
1
3.400
100.000
0.437
1.300
1.330
1.7
7120
2078
0.437
1
3.400
100.000
0.345
1.330
1.380
2.2
6974
2039
0.345
1
3.400
100.000
0.303
1.380
1.420
2.5
6702
1940
0.303
1
3.500
99.900
0.240
1.420
1.470
3.2
6623
1929
0.240
1
3.400
100.000
0.198
1.470
1.530
3.3
6260
1825
0.198
1
3.400
100.000
0.156
1.530
1.590
4.7
6094
1771
0.156
1
3.400
100.000
0.130
1.590
1.660
5.7
5881
1711
0.130
1
3.400
100.000
0.110
1.660
1.740
6.6
5594
1633
0.110
1
3.400
99.900
0.090
1.740
1.830
8.0
5308
1552
0.090
1
3.400
99.900
0.073
1.830
1.940
9.7
4951
1455
0.073
1
3.400
99.800
0.065
1.940
2.080
10.3
4740
1400
0.065
1
3.400
99.800
0.067
2.080
2.250
9.9
4286
1281
0.067
1
3.300
99.500
0.067
2.250
2.460
9.6
3924
1200
0.067
1
3.300
99.500
0.064
2.460
2.750
9.9
3383
1081
0.064
1
3.100
99.100
0.060
2.750
3.180
10.2
3093
964
0.060
1
3.200
99.100
0.042
3.180
3.890
14.9
2917
834
0.042
1
3.500
99.700
0.041
3.890
5.500
15.5
2278
662
0.041
1
3.400
99.300
0.051
5.500
29.553
12.1
1173
376
0.051
1
3.100
96.500
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
SOLVE
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
SCALA
package
3.3.20
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0110
data reduction
MOSFLM
Crystal structure of a RNA binding domain of poly-U binding splicing factor 60KDa (PUF60) from Homo sapiens at 1.23 A resolution
1
N
N
2
N
N
2
N
N
3
N
N
A
GLY
444
A
GLY
3
HELX_P
A
HIS
449
A
HIS
8
1
1
6
A
MSE
452
A
MSE
11
HELX_P
A
GLU
460
A
GLU
19
1
2
9
A
ASP
471
A
ASP
30
HELX_P
A
ILE
475
A
ILE
34
5
3
5
A
ASP
478
A
ASP
37
HELX_P
A
GLY
488
A
GLY
47
1
4
11
A
ILE
521
A
ILE
80
HELX_P
A
ASN
533
A
ASN
92
1
5
13
A
ASP
548
A
ASP
107
HELX_P
A
ASN
554
A
ASN
113
1
6
7
covale
1.326
both
A
HIS
449
A
C
HIS
8
1_555
A
MSE
450
A
N
MSE
9
1_555
covale
1.330
both
A
MSE
450
A
C
MSE
9
1_555
A
VAL
451
A
N
VAL
10
1_555
covale
1.345
both
A
VAL
451
A
C
VAL
10
1_555
A
MSE
452
A
N
MSE
11
1_555
covale
1.319
both
A
MSE
452
A
C
MSE
11
1_555
A
GLN
453
A
N
GLN
12
1_555
covale
1.336
both
A
VAL
463
A
C
VAL
22
1_555
A
MSE
464
A
N
MSE
23
1_555
covale
1.346
both
A
MSE
464
A
C
MSE
23
1_555
A
VAL
465
A
N
VAL
24
1_555
covale
1.362
both
A
ASN
468
A
C
ASN
27
1_555
A
MSE
469
A
N
MSE
28
1_555
covale
1.314
both
A
MSE
469
A
C
MSE
28
1_555
A
VAL
470
A
N
VAL
29
1_555
RNA BINDING PROTEIN
RNA RECOGNITION MOTIF, RRM, RNA BINDING DOMAIN, SPLICING, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, Partnership for T-Cell Biology, TCELL, RNA BINDING PROTEIN
PUF60_HUMAN
UNP
1
443
Q9UHX1
SGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA
SETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
443
559
3UE2
443
559
Q9UHX1
A
1
2
118
1
expression tag
GLY
0
3UE2
A
Q9UHX1
UNP
1
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
493
A
VAL
52
A
GLN
503
A
GLN
62
A
GLU
510
A
GLU
69
A
PHE
519
A
PHE
78
A
VAL
463
A
VAL
22
A
ARG
467
A
ARG
26
A
VAL
543
A
VAL
102
A
TYR
547
A
TYR
106
A
TRP
536
A
TRP
95
A
PHE
537
A
PHE
96
A
ARG
540
A
ARG
99
A
LYS
541
A
LYS
100
BINDING SITE FOR RESIDUE SO4 A 600
A
SO4
600
Software
11
BINDING SITE FOR RESIDUE SO4 A 601
A
SO4
601
Software
5
A
GLY
0
A
GLY
1
11
1_555
A
SER
443
A
SER
2
11
1_555
A
GLY
444
A
GLY
3
11
1_555
A
SER
445
A
SER
4
11
1_555
A
SER
446
A
SER
5
11
1_555
A
ALA
447
A
ALA
6
11
1_555
A
HIS
526
A
HIS
85
11
4_447
A
ARG
535
A
ARG
94
11
1_455
A
HOH
605
D
HOH
11
4_447
A
HOH
671
D
HOH
11
1_555
A
HOH
673
D
HOH
11
4_447
A
ARG
457
A
ARG
16
5
1_555
A
LYS
541
A
LYS
100
5
4_447
A
HOH
639
D
HOH
5
1_555
A
HOH
711
D
HOH
5
4_447
A
HOH
782
D
HOH
5
1_555
19
P 21 21 21