0.016815 0.000000 0.000000 0.000000 0.007188 0.000000 0.000000 0.000000 0.011105 0.000000 0.000000 0.000000 Kato, H.E. Ishitani, R. Nureki, O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 59.471 139.114 90.049 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C18 H34 O2 282.461 OLEIC ACID non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C20 H28 O 284.436 RETINAL non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 0028-0836 482 369 374 10.1038/nature10870 22266941 Crystal structure of the channelrhodopsin light-gated cation channel 2012 100 1 PIXEL 2011-09-02 PSI PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 X06SA SLS 0.9795 SYNCHROTRON SLS BEAMLINE X06SA chimera protein of Archaeal-type opsin 1 (UNP residues 24-245) and Archaeal-type opsin 2 (UNP residues 207-309) from Chlamydomonas reinhardtii 37441.984 Archaeal-type opsin 1, Archaeal-type opsin 2 1 man polymer 284.436 RETINAL 1 syn non-polymer 282.461 OLEIC ACID 6 syn non-polymer 18.015 water 43 nat water Channelopsin-1, Chlamyopsin 4 light-gated ion channel, Retinal binding protein, Sensory opsin B no no STGSDATVPVATQDGPDYVFHRAHERMLFQTSYTLENNGSVICIPNNGQCFCLAWLKSNGTNAEKLAANILQWITFALSA LCLMFYGYQTWKSTCGWEEIYVATIEMIKFIIEYFHEFDEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLAND YNKRTMGLLVSDIGTIVWGTTAALSKGYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKGRCRQVVTGMAWLFFVSWG MFPILFILGPEGFGVLSVYGSTVGHTIIDLMSKNCWGLLGHYLRVLIHEHILIHGDIRKTTKLNIGGTEIEVETLVEDEA EAGAVSSEDLYFQ STGSDATVPVATQDGPDYVFHRAHERMLFQTSYTLENNGSVICIPNNGQCFCLAWLKSNGTNAEKLAANILQWITFALSA LCLMFYGYQTWKSTCGWEEIYVATIEMIKFIIEYFHEFDEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLAND YNKRTMGLLVSDIGTIVWGTTAALSKGYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKGRCRQVVTGMAWLFFVSWG MFPILFILGPEGFGVLSVYGSTVGHTIIDLMSKNCWGLLGHYLRVLIHEHILIHGDIRKTTKLNIGGTEIEVETLVEDEA EAGAVSSEDLYFQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 222 acop1, acop2, CHLREDRAFT_182032, cop4, CSOB 3055 Chlamydomonas reinhardtii Sf9 7108 Spodoptera frugiperda baculovirus pFastBac sample 223 325 acop1, acop2, CHLREDRAFT_182032, cop4, CSOB 3055 Chlamydomonas reinhardtii Sf9 7108 Spodoptera frugiperda baculovirus pFastBac 1 2.49 50.55 lipid cubic phase 6.0 30% PEG 500 DME, 100mM Na Citrate (pH6.0), 100mM MgCl2, 100mM NaCl, 100mM (NH4)2SO4, lipid cubic phase, temperature 293K 293 entity_src_gen software repository Initial release Database references Database references Structure summary Refinement description Source and taxonomy 1 0 2012-01-25 1 1 2012-02-01 1 2 2012-02-22 1 3 2012-06-27 1 4 2017-08-09 _software.classification RCSB Y PDBJ 2011-11-02 REL REL RET RETINAL OLA OLEIC ACID HOH water RET 1 2 RET RET 401 A OLA 1 3 OLA OLA 501 A OLA 2 3 OLA OLA 502 A OLA 3 3 OLA OLA 503 A OLA 4 3 OLA OLA 504 A OLA 5 3 OLA OLA 505 A OLA 6 3 OLA OLA 506 A HOH 1 4 HOH HOH 601 A HOH 2 4 HOH HOH 602 A HOH 3 4 HOH HOH 603 A HOH 4 4 HOH HOH 604 A HOH 5 4 HOH HOH 605 A HOH 6 4 HOH HOH 606 A HOH 7 4 HOH HOH 607 A HOH 8 4 HOH HOH 608 A HOH 9 4 HOH HOH 609 A HOH 10 4 HOH HOH 610 A HOH 11 4 HOH HOH 611 A HOH 12 4 HOH HOH 612 A HOH 13 4 HOH HOH 613 A HOH 14 4 HOH HOH 614 A HOH 15 4 HOH HOH 615 A HOH 16 4 HOH HOH 616 A HOH 17 4 HOH HOH 617 A HOH 18 4 HOH HOH 618 A HOH 19 4 HOH HOH 619 A HOH 20 4 HOH HOH 620 A HOH 21 4 HOH HOH 621 A HOH 22 4 HOH HOH 622 A HOH 23 4 HOH HOH 623 A HOH 24 4 HOH HOH 624 A HOH 25 4 HOH HOH 625 A HOH 26 4 HOH HOH 626 A HOH 27 4 HOH HOH 627 A HOH 28 4 HOH HOH 628 A HOH 29 4 HOH HOH 629 A HOH 30 4 HOH HOH 630 A HOH 31 4 HOH HOH 631 A HOH 32 4 HOH HOH 632 A HOH 33 4 HOH HOH 633 A HOH 34 4 HOH HOH 634 A HOH 35 4 HOH HOH 635 A HOH 36 4 HOH HOH 636 A HOH 37 4 HOH HOH 637 A HOH 38 4 HOH HOH 638 A HOH 39 4 HOH HOH 639 A HOH 40 4 HOH HOH 640 A HOH 41 4 HOH HOH 641 A HOH 42 4 HOH HOH 642 A HOH 43 4 HOH HOH 643 A n 1 24 A n 2 25 A n 3 26 A n 4 27 A n 5 28 A n 6 29 A n 7 30 A n 8 31 A n 9 32 A n 10 33 A n 11 34 A n 12 35 A n 13 36 A n 14 37 A n 15 38 A n 16 39 A n 17 40 A n 18 41 A n 19 42 A n 20 43 A n 21 44 A n 22 45 A n 23 46 A n 24 47 A n 25 48 A ARG 49 n 26 ARG 49 A MET 50 n 27 MET 50 A LEU 51 n 28 LEU 51 A PHE 52 n 29 PHE 52 A GLN 53 n 30 GLN 53 A THR 54 n 31 THR 54 A SER 55 n 32 SER 55 A TYR 56 n 33 TYR 56 A THR 57 n 34 THR 57 A LEU 58 n 35 LEU 58 A GLU 59 n 36 GLU 59 A ASN 60 n 37 ASN 60 A ASN 61 n 38 ASN 61 A GLY 62 n 39 GLY 62 A SER 63 n 40 SER 63 A VAL 64 n 41 VAL 64 A ILE 65 n 42 ILE 65 A CYS 66 n 43 CYS 66 A ILE 67 n 44 ILE 67 A PRO 68 n 45 PRO 68 A ASN 69 n 46 ASN 69 A ASN 70 n 47 ASN 70 A GLY 71 n 48 GLY 71 A GLN 72 n 49 GLN 72 A CYS 73 n 50 CYS 73 A PHE 74 n 51 PHE 74 A CYS 75 n 52 CYS 75 A LEU 76 n 53 LEU 76 A ALA 77 n 54 ALA 77 A TRP 78 n 55 TRP 78 A LEU 79 n 56 LEU 79 A LYS 80 n 57 LYS 80 A SER 81 n 58 SER 81 A ASN 82 n 59 ASN 82 A GLY 83 n 60 GLY 83 A THR 84 n 61 THR 84 A ASN 85 n 62 ASN 85 A ALA 86 n 63 ALA 86 A GLU 87 n 64 GLU 87 A LYS 88 n 65 LYS 88 A LEU 89 n 66 LEU 89 A ALA 90 n 67 ALA 90 A ALA 91 n 68 ALA 91 A ASN 92 n 69 ASN 92 A ILE 93 n 70 ILE 93 A LEU 94 n 71 LEU 94 A GLN 95 n 72 GLN 95 A TRP 96 n 73 TRP 96 A ILE 97 n 74 ILE 97 A THR 98 n 75 THR 98 A PHE 99 n 76 PHE 99 A ALA 100 n 77 ALA 100 A LEU 101 n 78 LEU 101 A SER 102 n 79 SER 102 A ALA 103 n 80 ALA 103 A LEU 104 n 81 LEU 104 A CYS 105 n 82 CYS 105 A LEU 106 n 83 LEU 106 A MET 107 n 84 MET 107 A PHE 108 n 85 PHE 108 A TYR 109 n 86 TYR 109 A n 87 110 A n 88 111 A n 89 112 A n 90 113 A n 91 114 A n 92 115 A n 93 116 A n 94 117 A CYS 118 n 95 CYS 118 A GLY 119 n 96 GLY 119 A TRP 120 n 97 TRP 120 A GLU 121 n 98 GLU 121 A GLU 122 n 99 GLU 122 A ILE 123 n 100 ILE 123 A TYR 124 n 101 TYR 124 A VAL 125 n 102 VAL 125 A ALA 126 n 103 ALA 126 A THR 127 n 104 THR 127 A ILE 128 n 105 ILE 128 A GLU 129 n 106 GLU 129 A MET 130 n 107 MET 130 A ILE 131 n 108 ILE 131 A LYS 132 n 109 LYS 132 A PHE 133 n 110 PHE 133 A ILE 134 n 111 ILE 134 A ILE 135 n 112 ILE 135 A GLU 136 n 113 GLU 136 A TYR 137 n 114 TYR 137 A PHE 138 n 115 PHE 138 A HIS 139 n 116 HIS 139 A GLU 140 n 117 GLU 140 A PHE 141 n 118 PHE 141 A ASP 142 n 119 ASP 142 A GLU 143 n 120 GLU 143 A PRO 144 n 121 PRO 144 A ALA 145 n 122 ALA 145 A VAL 146 n 123 VAL 146 A ILE 147 n 124 ILE 147 A TYR 148 n 125 TYR 148 A SER 149 n 126 SER 149 A SER 150 n 127 SER 150 A ASN 151 n 128 ASN 151 A GLY 152 n 129 GLY 152 A ASN 153 n 130 ASN 153 A LYS 154 n 131 LYS 154 A THR 155 n 132 THR 155 A VAL 156 n 133 VAL 156 A TRP 157 n 134 TRP 157 A LEU 158 n 135 LEU 158 A ARG 159 n 136 ARG 159 A TYR 160 n 137 TYR 160 A ALA 161 n 138 ALA 161 A GLU 162 n 139 GLU 162 A TRP 163 n 140 TRP 163 A LEU 164 n 141 LEU 164 A LEU 165 n 142 LEU 165 A THR 166 n 143 THR 166 A CYS 167 n 144 CYS 167 A PRO 168 n 145 PRO 168 A VAL 169 n 146 VAL 169 A ILE 170 n 147 ILE 170 A LEU 171 n 148 LEU 171 A ILE 172 n 149 ILE 172 A HIS 173 n 150 HIS 173 A LEU 174 n 151 LEU 174 A SER 175 n 152 SER 175 A ASN 176 n 153 ASN 176 A LEU 177 n 154 LEU 177 A THR 178 n 155 THR 178 A GLY 179 n 156 GLY 179 A LEU 180 n 157 LEU 180 A ALA 181 n 158 ALA 181 A ASN 182 n 159 ASN 182 A ASP 183 n 160 ASP 183 A TYR 184 n 161 TYR 184 A ASN 185 n 162 ASN 185 A LYS 186 n 163 LYS 186 A ARG 187 n 164 ARG 187 A THR 188 n 165 THR 188 A MET 189 n 166 MET 189 A GLY 190 n 167 GLY 190 A LEU 191 n 168 LEU 191 A LEU 192 n 169 LEU 192 A VAL 193 n 170 VAL 193 A SER 194 n 171 SER 194 A ASP 195 n 172 ASP 195 A ILE 196 n 173 ILE 196 A GLY 197 n 174 GLY 197 A THR 198 n 175 THR 198 A ILE 199 n 176 ILE 199 A VAL 200 n 177 VAL 200 A TRP 201 n 178 TRP 201 A GLY 202 n 179 GLY 202 A THR 203 n 180 THR 203 A THR 204 n 181 THR 204 A ALA 205 n 182 ALA 205 A ALA 206 n 183 ALA 206 A LEU 207 n 184 LEU 207 A SER 208 n 185 SER 208 A LYS 209 n 186 LYS 209 A GLY 210 n 187 GLY 210 A TYR 211 n 188 TYR 211 A VAL 212 n 189 VAL 212 A ARG 213 n 190 ARG 213 A VAL 214 n 191 VAL 214 A ILE 215 n 192 ILE 215 A PHE 216 n 193 PHE 216 A PHE 217 n 194 PHE 217 A LEU 218 n 195 LEU 218 A MET 219 n 196 MET 219 A GLY 220 n 197 GLY 220 A LEU 221 n 198 LEU 221 A CYS 222 n 199 CYS 222 A TYR 223 n 200 TYR 223 A GLY 224 n 201 GLY 224 A ILE 225 n 202 ILE 225 A TYR 226 n 203 TYR 226 A THR 227 n 204 THR 227 A PHE 228 n 205 PHE 228 A PHE 229 n 206 PHE 229 A ASN 230 n 207 ASN 230 A ALA 231 n 208 ALA 231 A ALA 232 n 209 ALA 232 A LYS 233 n 210 LYS 233 A VAL 234 n 211 VAL 234 A TYR 235 n 212 TYR 235 A ILE 236 n 213 ILE 236 A GLU 237 n 214 GLU 237 A ALA 238 n 215 ALA 238 A TYR 239 n 216 TYR 239 A HIS 240 n 217 HIS 240 A THR 241 n 218 THR 241 A VAL 242 n 219 VAL 242 A PRO 243 n 220 PRO 243 A LYS 244 n 221 LYS 244 A GLY 245 n 222 GLY 245 A ARG 246 n 223 ARG 246 A CYS 247 n 224 CYS 247 A ARG 248 n 225 ARG 248 A GLN 249 n 226 GLN 249 A VAL 250 n 227 VAL 250 A VAL 251 n 228 VAL 251 A THR 252 n 229 THR 252 A GLY 253 n 230 GLY 253 A MET 254 n 231 MET 254 A ALA 255 n 232 ALA 255 A TRP 256 n 233 TRP 256 A LEU 257 n 234 LEU 257 A PHE 258 n 235 PHE 258 A PHE 259 n 236 PHE 259 A VAL 260 n 237 VAL 260 A SER 261 n 238 SER 261 A TRP 262 n 239 TRP 262 A GLY 263 n 240 GLY 263 A MET 264 n 241 MET 264 A PHE 265 n 242 PHE 265 A PRO 266 n 243 PRO 266 A ILE 267 n 244 ILE 267 A LEU 268 n 245 LEU 268 A PHE 269 n 246 PHE 269 A ILE 270 n 247 ILE 270 A LEU 271 n 248 LEU 271 A GLY 272 n 249 GLY 272 A PRO 273 n 250 PRO 273 A GLU 274 n 251 GLU 274 A GLY 275 n 252 GLY 275 A PHE 276 n 253 PHE 276 A GLY 277 n 254 GLY 277 A VAL 278 n 255 VAL 278 A LEU 279 n 256 LEU 279 A SER 280 n 257 SER 280 A VAL 281 n 258 VAL 281 A TYR 282 n 259 TYR 282 A GLY 283 n 260 GLY 283 A SER 284 n 261 SER 284 A THR 285 n 262 THR 285 A VAL 286 n 263 VAL 286 A GLY 287 n 264 GLY 287 A HIS 288 n 265 HIS 288 A THR 289 n 266 THR 289 A ILE 290 n 267 ILE 290 A ILE 291 n 268 ILE 291 A ASP 292 n 269 ASP 292 A LEU 293 n 270 LEU 293 A MET 294 n 271 MET 294 A SER 295 n 272 SER 295 A LYS 296 n 273 LYS 296 A ASN 297 n 274 ASN 297 A CYS 298 n 275 CYS 298 A TRP 299 n 276 TRP 299 A GLY 300 n 277 GLY 300 A LEU 301 n 278 LEU 301 A LEU 302 n 279 LEU 302 A GLY 303 n 280 GLY 303 A HIS 304 n 281 HIS 304 A TYR 305 n 282 TYR 305 A LEU 306 n 283 LEU 306 A ARG 307 n 284 ARG 307 A VAL 308 n 285 VAL 308 A LEU 309 n 286 LEU 309 A ILE 310 n 287 ILE 310 A HIS 311 n 288 HIS 311 A GLU 312 n 289 GLU 312 A HIS 313 n 290 HIS 313 A ILE 314 n 291 ILE 314 A LEU 315 n 292 LEU 315 A ILE 316 n 293 ILE 316 A HIS 317 n 294 HIS 317 A GLY 318 n 295 GLY 318 A ASP 319 n 296 ASP 319 A ILE 320 n 297 ILE 320 A ARG 321 n 298 ARG 321 A LYS 322 n 299 LYS 322 A THR 323 n 300 THR 323 A THR 324 n 301 THR 324 A LYS 325 n 302 LYS 325 A LEU 326 n 303 LEU 326 A n 304 327 A n 305 328 A n 306 329 A n 307 330 A n 308 331 A n 309 332 A ILE 333 n 310 ILE 333 A GLU 334 n 311 GLU 334 A VAL 335 n 312 VAL 335 A GLU 336 n 313 GLU 336 A THR 337 n 314 THR 337 A LEU 338 n 315 LEU 338 A VAL 339 n 316 VAL 339 A GLU 340 n 317 GLU 340 A ASP 341 n 318 ASP 341 A GLU 342 n 319 GLU 342 A n 320 343 A n 321 344 A n 322 345 A n 323 346 A n 324 347 A n 325 348 A n 326 349 A n 327 350 A n 328 351 A n 329 352 A n 330 353 A n 331 354 A n 332 355 A n 333 356 A 0.3306 -0.0954 -0.3052 0.2033 -0.1755 0.3972 -0.0752 -0.0048 -0.2926 0.0521 -0.0444 -0.7804 0.0152 0.0249 -0.0002 0.2890 -0.0090 -0.0368 0.3128 0.0215 0.5556 refined 11.9067 21.1278 17.7379 X-RAY DIFFRACTION 0.3886 -0.1300 -0.2106 0.1729 -0.0415 0.1863 -0.0262 0.1264 0.0351 -0.2427 0.0847 0.0780 -0.0422 0.0053 0.0000 0.3153 -0.0281 -0.0383 0.3025 0.0073 0.2196 refined -0.2448 41.3803 13.7198 X-RAY DIFFRACTION 1.1548 0.1367 0.4471 0.3542 -0.0759 0.1438 -0.1569 0.1671 0.1571 -0.2838 0.1859 0.0727 -0.0590 0.0812 0.0000 0.3281 -0.0612 0.0509 0.2847 -0.0123 0.2553 refined 10.0656 46.9462 7.7670 X-RAY DIFFRACTION A 49 A 156 X-RAY DIFFRACTION 1 chain 'A' and (resseq 49:156) A 157 A 241 X-RAY DIFFRACTION 2 chain 'A' and (resseq 157:241) A 242 A 401 X-RAY DIFFRACTION 3 chain 'A' and (resseq 242:342) or chain 'A' and (resseq 401) author_and_software_defined_assembly PISA 2 dimeric 11310 0 21570 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_555 -x,y,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 45.0245000000 A N GLU 59 A N GLU 36 A O VAL 64 A O VAL 41 A N ILE 147 A N ILE 124 A O THR 155 A O THR 132 A N THR 324 A N THR 301 A O VAL 335 A O VAL 312 1 A CG ARG 49 A CG ARG 26 1 Y 1 A CD ARG 49 A CD ARG 26 1 Y 1 A NE ARG 49 A NE ARG 26 1 Y 1 A CZ ARG 49 A CZ ARG 26 1 Y 1 A NH1 ARG 49 A NH1 ARG 26 1 Y 1 A NH2 ARG 49 A NH2 ARG 26 1 Y 1 A CG MET 50 A CG MET 27 1 Y 1 A SD MET 50 A SD MET 27 1 Y 1 A CE MET 50 A CE MET 27 1 Y 1 A CG LEU 51 A CG LEU 28 1 Y 1 A CD1 LEU 51 A CD1 LEU 28 1 Y 1 A CD2 LEU 51 A CD2 LEU 28 1 Y 1 A CD LYS 80 A CD LYS 57 1 Y 1 A CE LYS 80 A CE LYS 57 1 Y 1 A NZ LYS 80 A NZ LYS 57 1 Y 1 A SG CYS 118 A SG CYS 95 1 Y 1 A CG ASN 182 A CG ASN 159 1 Y 1 A OD1 ASN 182 A OD1 ASN 159 1 Y 1 A ND2 ASN 182 A ND2 ASN 159 1 Y 1 A CG LYS 186 A CG LYS 163 1 Y 1 A CD LYS 186 A CD LYS 163 1 Y 1 A CE LYS 186 A CE LYS 163 1 Y 1 A NZ LYS 186 A NZ LYS 163 1 Y 1 A CG TYR 211 A CG TYR 188 1 Y 1 A CD1 TYR 211 A CD1 TYR 188 1 Y 1 A CD2 TYR 211 A CD2 TYR 188 1 Y 1 A CE1 TYR 211 A CE1 TYR 188 1 Y 1 A CE2 TYR 211 A CE2 TYR 188 1 Y 1 A CZ TYR 211 A CZ TYR 188 1 Y 1 A OH TYR 211 A OH TYR 188 1 Y 1 A CG LYS 244 A CG LYS 221 1 Y 1 A CD LYS 244 A CD LYS 221 1 Y 1 A CE LYS 244 A CE LYS 221 1 Y 1 A NZ LYS 244 A NZ LYS 221 1 Y 1 A NE ARG 246 A NE ARG 223 1 Y 1 A CZ ARG 246 A CZ ARG 223 1 Y 1 A NH1 ARG 246 A NH1 ARG 223 1 Y 1 A NH2 ARG 246 A NH2 ARG 223 1 Y 1 A CG LYS 322 A CG LYS 299 1 Y 1 A CD LYS 322 A CD LYS 299 1 Y 1 A CE LYS 322 A CE LYS 299 1 Y 1 A NZ LYS 322 A NZ LYS 299 1 Y 1 A CG LYS 325 A CG LYS 302 1 Y 1 A CD LYS 325 A CD LYS 302 1 Y 1 A CE LYS 325 A CE LYS 302 1 Y 1 A NZ LYS 325 A NZ LYS 302 1 Y 1 A CG1 ILE 333 A CG1 ILE 310 1 Y 1 A CG2 ILE 333 A CG2 ILE 310 1 Y 1 A CD1 ILE 333 A CD1 ILE 310 1 Y 1 A CG GLU 334 A CG GLU 311 1 Y 1 A CD GLU 334 A CD GLU 311 1 Y 1 A OE1 GLU 334 A OE1 GLU 311 1 Y 1 A OE2 GLU 334 A OE2 GLU 311 1 Y 1 A CG ASP 341 A CG ASP 318 1 Y 1 A OD1 ASP 341 A OD1 ASP 318 1 Y 1 A OD2 ASP 341 A OD2 ASP 318 1 Y 1 A CG GLU 342 A CG GLU 319 1 Y 1 A CD GLU 342 A CD GLU 319 1 Y 1 A OE1 GLU 342 A OE1 GLU 319 1 Y 1 A OE2 GLU 342 A OE2 GLU 319 1 Y 1 A C12 OLA 501 C C12 OLA 1 1 N 1 A C13 OLA 501 C C13 OLA 1 1 N 1 A C14 OLA 501 C C14 OLA 1 1 N 1 A C15 OLA 501 C C15 OLA 1 1 N 1 A C16 OLA 501 C C16 OLA 1 1 N 1 A C17 OLA 501 C C17 OLA 1 1 N 1 A C18 OLA 501 C C18 OLA 1 1 N 1 A C13 OLA 502 D C13 OLA 1 1 N 1 A C14 OLA 502 D C14 OLA 1 1 N 1 A C15 OLA 502 D C15 OLA 1 1 N 1 A C16 OLA 502 D C16 OLA 1 1 N 1 A C17 OLA 502 D C17 OLA 1 1 N 1 A C18 OLA 502 D C18 OLA 1 1 N 1 A C1 OLA 503 E C1 OLA 1 1 N 1 A O1 OLA 503 E O1 OLA 1 1 N 1 A O2 OLA 503 E O2 OLA 1 1 N 1 A C11 OLA 503 E C11 OLA 1 1 N 1 A C12 OLA 503 E C12 OLA 1 1 N 1 A C13 OLA 503 E C13 OLA 1 1 N 1 A C14 OLA 503 E C14 OLA 1 1 N 1 A C15 OLA 503 E C15 OLA 1 1 N 1 A C16 OLA 503 E C16 OLA 1 1 N 1 A C17 OLA 503 E C17 OLA 1 1 N 1 A C18 OLA 503 E C18 OLA 1 1 N 1 A C12 OLA 504 F C12 OLA 1 1 N 1 A C13 OLA 504 F C13 OLA 1 1 N 1 A C14 OLA 504 F C14 OLA 1 1 N 1 A C15 OLA 504 F C15 OLA 1 1 N 1 A C16 OLA 504 F C16 OLA 1 1 N 1 A C17 OLA 504 F C17 OLA 1 1 N 1 A C18 OLA 504 F C18 OLA 1 1 N 1 A O1 OLA 505 G O1 OLA 1 1 N 1 A O2 OLA 505 G O2 OLA 1 1 N 1 A C11 OLA 505 G C11 OLA 1 1 N 1 A C12 OLA 505 G C12 OLA 1 1 N 1 A C13 OLA 505 G C13 OLA 1 1 N 1 A C14 OLA 505 G C14 OLA 1 1 N 1 A C15 OLA 505 G C15 OLA 1 1 N 1 A C16 OLA 505 G C16 OLA 1 1 N 1 A C17 OLA 505 G C17 OLA 1 1 N 1 A C18 OLA 505 G C18 OLA 1 1 N 1 A C1 OLA 506 H C1 OLA 1 1 N 1 A O1 OLA 506 H O1 OLA 1 1 N 1 A O2 OLA 506 H O2 OLA 1 1 N 1 A C2 OLA 506 H C2 OLA 1 1 N 1 A C3 OLA 506 H C3 OLA 1 1 N 1 A C4 OLA 506 H C4 OLA 1 1 N 1 A C5 OLA 506 H C5 OLA 1 1 N 1 A C6 OLA 506 H C6 OLA 1 1 N 1 A C7 OLA 506 H C7 OLA 1 1 N 1 A C8 OLA 506 H C8 OLA 1 1 N 1 A C9 OLA 506 H C9 OLA 1 1 N 1 A C16 OLA 506 H C16 OLA 1 1 N 1 A C17 OLA 506 H C17 OLA 1 1 N 1 A C18 OLA 506 H C18 OLA 1 1 N 1 A SER 24 A SER 1 1 Y 1 A THR 25 A THR 2 1 Y 1 A GLY 26 A GLY 3 1 Y 1 A SER 27 A SER 4 1 Y 1 A ASP 28 A ASP 5 1 Y 1 A ALA 29 A ALA 6 1 Y 1 A THR 30 A THR 7 1 Y 1 A VAL 31 A VAL 8 1 Y 1 A PRO 32 A PRO 9 1 Y 1 A VAL 33 A VAL 10 1 Y 1 A ALA 34 A ALA 11 1 Y 1 A THR 35 A THR 12 1 Y 1 A GLN 36 A GLN 13 1 Y 1 A ASP 37 A ASP 14 1 Y 1 A GLY 38 A GLY 15 1 Y 1 A PRO 39 A PRO 16 1 Y 1 A ASP 40 A ASP 17 1 Y 1 A TYR 41 A TYR 18 1 Y 1 A VAL 42 A VAL 19 1 Y 1 A PHE 43 A PHE 20 1 Y 1 A HIS 44 A HIS 21 1 Y 1 A ARG 45 A ARG 22 1 Y 1 A ALA 46 A ALA 23 1 Y 1 A HIS 47 A HIS 24 1 Y 1 A GLU 48 A GLU 25 1 Y 1 A GLY 110 A GLY 87 1 Y 1 A TYR 111 A TYR 88 1 Y 1 A GLN 112 A GLN 89 1 Y 1 A THR 113 A THR 90 1 Y 1 A TRP 114 A TRP 91 1 Y 1 A LYS 115 A LYS 92 1 Y 1 A SER 116 A SER 93 1 Y 1 A THR 117 A THR 94 1 Y 1 A ASN 327 A ASN 304 1 Y 1 A ILE 328 A ILE 305 1 Y 1 A GLY 329 A GLY 306 1 Y 1 A GLY 330 A GLY 307 1 Y 1 A THR 331 A THR 308 1 Y 1 A GLU 332 A GLU 309 1 Y 1 A ALA 343 A ALA 320 1 Y 1 A GLU 344 A GLU 321 1 Y 1 A ALA 345 A ALA 322 1 Y 1 A GLY 346 A GLY 323 1 Y 1 A ALA 347 A ALA 324 1 Y 1 A VAL 348 A VAL 325 1 Y 1 A SER 349 A SER 326 1 Y 1 A SER 350 A SER 327 1 Y 1 A GLU 351 A GLU 328 1 Y 1 A ASP 352 A ASP 329 1 Y 1 A LEU 353 A LEU 330 1 Y 1 A TYR 354 A TYR 331 1 Y 1 A PHE 355 A PHE 332 1 Y 1 A GLN 356 A GLN 333 1 Y 1 A A ALA ASN 181 182 149.38 1 A ASN 176 -142.31 56.91 1 A TYR 184 -37.22 121.74 1 A ASN 185 -120.42 -168.97 165.720 51.5985 21.080 2.9262 -0.0000 0.0000 -15.2461 0.0000 12.3199 0.2512 0.2040 0.2088 2.3000 36.5690 1672 16709 10.0100 98.4000 1.000 0.500 0.8366 0.7800 1 1.340 MOLECULAR REPLACEMENT 23.2600 0.7300 1.0000 ML FLAT BULK SOLVENT MODEL 37.3340 0.3180 2.3000 36.5690 43 2307 85 0 2179 0.008 2329 1.306 3151 0.086 356 0.006 382 19.077 799 0.3226 0.2832 2.3677 136 1222 1358 12 98.0000 0.3384 0.2778 2.4441 139 1245 1384 12 99.0000 0.3349 0.2438 2.5314 134 1207 1341 12 98.0000 0.2422 0.2032 2.6328 137 1238 1375 12 98.0000 0.2342 0.1757 2.7526 137 1224 1361 12 98.0000 0.2731 0.1801 2.8976 138 1250 1388 12 98.0000 0.2912 0.1922 3.0791 138 1247 1385 12 99.0000 0.2578 0.1964 3.3167 139 1249 1388 12 98.0000 0.2275 0.1835 3.6502 139 1258 1397 12 99.0000 0.2418 0.1917 4.1777 143 1278 1421 12 99.0000 0.2441 0.1942 5.2610 141 1269 1410 12 99.0000 0.2258 0.2276 36.5733 151 1350 1501 12 98.0000 53.000 2.300 37.80 3UG9 18985 -3.000 0.080 1 16.500 97.900 0.828 0.936 2.300 2.440 1.940 16827 2699 2581 1.017 1 95.600 0.488 0.568 2.440 2.610 3.410 16904 2536 2475 0.615 1 97.600 0.276 0.337 2.610 2.810 5.680 16066 2385 2347 0.364 1 98.400 0.162 0.195 2.810 3.080 9.120 14184 2191 2163 0.212 1 98.700 0.095 0.119 3.080 3.440 15.060 13547 1993 1967 0.129 1 98.700 0.047 0.057 3.440 3.970 28.160 11400 1770 1742 0.062 1 98.400 0.024 0.035 3.970 4.860 42.480 9928 1515 1498 0.038 1 98.900 0.027 0.039 4.860 6.830 39.800 7441 1195 1179 0.043 1 98.700 0.016 0.024 6.830 55.270 4197 726 709 0.026 1 97.700 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.7.2_869 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data reduction XDS data scaling XDS phasing MOLREP Archaeal-type opsin 1, Archaeal-type opsin 2 Crystal Structure of the Closed State of Channelrhodopsin 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N A CYS 75 A CYS 52 HELX_P A LYS 80 A LYS 57 1 1 6 A THR 84 A THR 61 HELX_P A TYR 109 A TYR 86 1 2 26 A GLY 119 A GLY 96 HELX_P A GLU 140 A GLU 117 1 3 22 A VAL 156 A VAL 133 HELX_P A SER 175 A SER 152 1 4 20 A ASN 185 A ASN 162 HELX_P A SER 208 A SER 185 1 5 24 A LYS 209 A LYS 186 HELX_P A VAL 242 A VAL 219 1 6 34 A GLY 245 A GLY 222 HELX_P A GLY 272 A GLY 249 1 7 28 A SER 280 A SER 257 HELX_P A LYS 296 A LYS 273 1 8 17 A LYS 296 A LYS 273 HELX_P A GLY 318 A GLY 295 1 9 23 disulf 2.032 A CYS 66 A SG CYS 43 1_555 A CYS 66 A SG CYS 43 3_555 disulf 2.057 A CYS 73 A SG CYS 50 1_555 A CYS 75 A SG CYS 52 3_555 covale 1.470 A RET 401 B C15 RET 1_555 A LYS 296 A NZ LYS 273 1_555 MEMBRANE PROTEIN microbialrhodopsin, seven-transmembrane, light-gated cation channel, MEMBRANE PROTEIN A GLU 143 A GLU 120 1 A PRO 144 A PRO 121 1.25 Q93WP2_CHLRE UNP 1 24 Q93WP2 STGSDATVPVATQDGPDYVFHRAHERMLFQTSYTLENNGSVICIPNNGQCFCLAWLKSNGTNAEKLAANILQWITFALSA LCLMFYGYQTWKSTCGWEEIYVATIEMIKFIIEYFHEFDEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLAND YNKRTMGLLVSDIGTIVWGTTAALSKGYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKG Q8RUT8_CHLRE UNP 1 207 Q8RUT8 RCRQVVTGMAWLFFVSWGMFPILFILGPEGFGVLSVYGSTVGHTIIDLMSKNCWGLLGHYLRVLIHEHILIHGDIRKTTK LNIGGTEIEVETLVEDEAEAGAV 24 245 3UG9 24 245 Q93WP2 A 1 1 222 207 309 3UG9 246 348 Q8RUT8 A 2 223 325 2 EXPRESSION TAG SER 349 3UG9 A Q8RUT8 UNP 326 2 EXPRESSION TAG SER 350 3UG9 A Q8RUT8 UNP 327 2 EXPRESSION TAG GLU 351 3UG9 A Q8RUT8 UNP 328 2 EXPRESSION TAG ASP 352 3UG9 A Q8RUT8 UNP 329 2 EXPRESSION TAG LEU 353 3UG9 A Q8RUT8 UNP 330 2 EXPRESSION TAG TYR 354 3UG9 A Q8RUT8 UNP 331 2 EXPRESSION TAG PHE 355 3UG9 A Q8RUT8 UNP 332 2 EXPRESSION TAG GLN 356 3UG9 A Q8RUT8 UNP 333 2 2 2 anti-parallel anti-parallel anti-parallel A THR 57 A THR 34 A GLU 59 A GLU 36 A VAL 64 A VAL 41 A CYS 66 A CYS 43 A ILE 147 A ILE 124 A TYR 148 A TYR 125 A LYS 154 A LYS 131 A THR 155 A THR 132 A ILE 320 A ILE 297 A THR 324 A THR 301 A VAL 335 A VAL 312 A VAL 339 A VAL 316 BINDING SITE FOR RESIDUE RET A 401 Software 8 BINDING SITE FOR RESIDUE OLA A 501 Software 6 BINDING SITE FOR RESIDUE OLA A 502 Software 10 BINDING SITE FOR RESIDUE OLA A 503 Software 1 BINDING SITE FOR RESIDUE OLA A 504 Software 5 BINDING SITE FOR RESIDUE OLA A 505 Software 1 BINDING SITE FOR RESIDUE OLA A 506 Software 1 A TRP 163 A TRP 140 8 1_555 A CYS 167 A CYS 144 8 1_555 A THR 198 A THR 175 8 1_555 A GLY 202 A GLY 179 8 1_555 A TRP 262 A TRP 239 8 1_555 A PHE 265 A PHE 242 8 1_555 A SER 295 A SER 272 8 1_555 A LYS 296 A LYS 273 8 1_555 A TRP 120 A TRP 97 6 3_555 A LYS 186 A LYS 163 6 1_555 A GLY 190 A GLY 167 6 1_555 A CYS 222 A CYS 199 6 1_555 A TYR 223 A TYR 200 6 1_555 A TYR 226 A TYR 203 6 1_555 A ILE 135 A ILE 112 10 1_555 A HIS 139 A HIS 116 10 1_555 A ASP 142 A ASP 119 10 1_555 A GLU 143 A GLU 120 10 1_555 A PRO 144 A PRO 121 10 1_555 A ALA 145 A ALA 122 10 1_555 A LEU 158 A LEU 135 10 1_555 A ALA 161 A ALA 138 10 1_555 A LEU 165 A LEU 142 10 1_555 A THR 204 A THR 181 10 3_555 A HIS 139 A HIS 116 1 3_555 A GLY 210 A GLY 187 5 1_555 A ARG 213 A ARG 190 5 1_555 A PHE 217 A PHE 194 5 1_555 A GLY 275 A GLY 252 5 1_555 A PHE 276 A PHE 253 5 1_555 A GLY 287 A GLY 264 1 1_555 A ILE 93 A ILE 70 1 8_455 20 C 2 2 21