0.011628 0.000000 0.000000 0.000000 0.011628 0.000000 0.000000 0.000000 0.009446 0.00000 0.00000 0.00000 Feklistov, A. Darst, S.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 86.001 86.001 105.862 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C Y 122 N N Y 123 N C Y 124 N N Y 125 N C N 126 N C N 127 N O N 128 N N N 129 N C N 130 N N N 131 N N Y 132 N C N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N O N 148 N P N 149 N O N 150 N O N 151 N O N 152 N C N 153 R C N 154 N O N 155 S C N 156 N O N 157 N C N 158 R C N 159 N N N 160 N C N 161 N O N 162 N N N 163 N C N 164 N O N 165 N C N 166 N C N 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N O N 191 N N N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C N 208 N C N 209 N C N 210 N O N 211 N O N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N N N 223 N C N 224 N C N 225 N O N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C Y 237 N C Y 238 N N Y 239 N C Y 240 N C Y 241 N N N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N O N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 S C N 261 N C N 262 N C N 263 N C N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N K N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C N 284 N C N 285 N C N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C N 306 N C N 307 N C N 308 N C N 309 N N N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N S N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N N N 387 S C N 388 N C N 389 N O N 390 N C N 391 N O N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N N N 401 S C N 402 N C N 403 N O N 404 R C N 405 N O N 406 N C N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 N C Y 422 N C Y 423 N C Y 424 N C Y 425 N N Y 426 N C Y 427 N C Y 428 N C Y 429 N C Y 430 N C N 431 N O N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N N N 445 S C N 446 N C N 447 N O N 448 N C Y 449 N C Y 450 N C Y 451 N C Y 452 N C Y 453 N C Y 454 N C N 455 N O N 456 N O N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N N N 469 S C N 470 N C N 471 N O N 472 N C N 473 N C N 474 N C N 475 N O N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing Y 93 N sing Y 94 N sing Y 95 N doub N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing Y 131 N sing Y 132 N sing Y 133 N doub N 134 N sing Y 135 N sing N 136 N sing Y 137 N doub N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing Y 241 N sing Y 242 N doub Y 243 N doub N 244 N sing Y 245 N sing N 246 N sing Y 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing Y 418 N doub Y 419 N sing Y 420 N sing N 421 N sing Y 422 N doub Y 423 N sing Y 424 N sing N 425 N sing Y 426 N sing Y 427 N doub N 428 N sing Y 429 N doub N 430 N sing Y 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N doub N 442 N sing N 443 N sing N 444 N sing N 445 N sing Y 446 N doub Y 447 N sing Y 448 N sing N 449 N sing Y 450 N doub N 451 N sing Y 452 N doub N 453 N sing Y 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N doub N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 147 1257 1269 10.1016/j.cell.2011.10.041 22136875 Structural basis for promoter-10 element recognition by the bacterial RNA polymerase sigma subunit. 2011 10.2210/pdb3ugp/pdb pdb_00003ugp 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 77 1 CCD 2009-08-09 ADSC QUANTUM 315 Si(111) SINGLE WAVELENGTH M x-ray 1 0.97918 1.0 24-ID-E APS 0.97918 SYNCHROTRON APS BEAMLINE 24-ID-E 28038.398 RNA polymerase sigma factor domain 2 (UNP residues 92-332) 1 man polymer 3428.257 5'-D(*TP*GP*TP*AP*TP*AP*AP*TP*GP*GP*G)-3' 2 syn polymer 39.098 POTASSIUM ION 5 syn non-polymer 18.015 water 39 nat water no no GPHMTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPD PKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRR FKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQ EPVSL GPHMTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPD PKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRR FKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQ EPVSL A polypeptide(L) no no (DT)(DG)(DT)(DA)(DT)(DA)(DA)(DT)(DG)(DG)(DG) TGTATAATGGG B,C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 271 Thermus aquaticus 562 Escherichia coli 2.80 56.15 VAPOR DIFFUSION, HANGING DROP 8.5 5% PEG8000, 20% PEG300, 10% glycerol, 0.15% mellitic acid, 100 mM Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2011-12-07 1 1 2012-03-07 1 2 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2011-11-02 REL REL K POTASSIUM ION HOH water 1KU2 PDB ENTRY 1KU2 PDB experimental model K 12 3 K K 12 B K 13 3 K K 13 B K 14 3 K K 14 B K 12 3 K K 12 C K 13 3 K K 13 C HOH 1 4 HOH HOH 1 A HOH 2 4 HOH HOH 2 A HOH 4 4 HOH HOH 4 A HOH 5 4 HOH HOH 5 A HOH 9 4 HOH HOH 9 A HOH 10 4 HOH HOH 10 A HOH 12 4 HOH HOH 12 A HOH 13 4 HOH HOH 13 A HOH 14 4 HOH HOH 14 A HOH 17 4 HOH HOH 17 A HOH 18 4 HOH HOH 18 A HOH 19 4 HOH HOH 19 A HOH 20 4 HOH HOH 20 A HOH 21 4 HOH HOH 21 A HOH 23 4 HOH HOH 23 A HOH 25 4 HOH HOH 25 A HOH 26 4 HOH HOH 26 A HOH 28 4 HOH HOH 28 A HOH 29 4 HOH HOH 29 A HOH 30 4 HOH HOH 30 A HOH 33 4 HOH HOH 33 A HOH 34 4 HOH HOH 34 A HOH 35 4 HOH HOH 35 A HOH 39 4 HOH HOH 39 A HOH 15 4 HOH HOH 15 B HOH 16 4 HOH HOH 16 B HOH 17 4 HOH HOH 17 B HOH 18 4 HOH HOH 18 B HOH 19 4 HOH HOH 19 B HOH 20 4 HOH HOH 20 B HOH 22 4 HOH HOH 22 B HOH 27 4 HOH HOH 27 B HOH 31 4 HOH HOH 31 B HOH 32 4 HOH HOH 32 B HOH 36 4 HOH HOH 36 B HOH 37 4 HOH HOH 37 B HOH 38 4 HOH HOH 38 B HOH 14 4 HOH HOH 14 C HOH 24 4 HOH HOH 24 C n 1 88 A n 2 89 A n 3 90 A n 4 91 A n 5 92 A SER 93 n 6 SER 93 A ASP 94 n 7 ASP 94 A PRO 95 n 8 PRO 95 A VAL 96 n 9 VAL 96 A ARG 97 n 10 ARG 97 A GLN 98 n 11 GLN 98 A TYR 99 n 12 TYR 99 A LEU 100 n 13 LEU 100 A HIS 101 n 14 HIS 101 A GLU 102 n 15 GLU 102 A ILE 103 n 16 ILE 103 A GLY 104 n 17 GLY 104 A GLN 105 n 18 GLN 105 A VAL 106 n 19 VAL 106 A PRO 107 n 20 PRO 107 A LEU 108 n 21 LEU 108 A LEU 109 n 22 LEU 109 A THR 110 n 23 THR 110 A LEU 111 n 24 LEU 111 A GLU 112 n 25 GLU 112 A GLU 113 n 26 GLU 113 A GLU 114 n 27 GLU 114 A ILE 115 n 28 ILE 115 A ASP 116 n 29 ASP 116 A LEU 117 n 30 LEU 117 A ALA 118 n 31 ALA 118 A ARG 119 n 32 ARG 119 A LYS 120 n 33 LYS 120 A VAL 121 n 34 VAL 121 A GLU 122 n 35 GLU 122 A GLU 123 n 36 GLU 123 A GLY 124 n 37 GLY 124 A MET 125 n 38 MET 125 A GLU 126 n 39 GLU 126 A ALA 127 n 40 ALA 127 A ILE 128 n 41 ILE 128 A LYS 129 n 42 LYS 129 A LYS 130 n 43 LYS 130 A LEU 131 n 44 LEU 131 A SER 132 n 45 SER 132 A GLU 133 n 46 GLU 133 A ALA 134 n 47 ALA 134 A THR 135 n 48 THR 135 A GLY 136 n 49 GLY 136 A LEU 137 n 50 LEU 137 A ASP 138 n 51 ASP 138 A GLN 139 n 52 GLN 139 A GLU 140 n 53 GLU 140 A LEU 141 n 54 LEU 141 A ILE 142 n 55 ILE 142 A ARG 143 n 56 ARG 143 A GLU 144 n 57 GLU 144 A VAL 145 n 58 VAL 145 A VAL 146 n 59 VAL 146 A ARG 147 n 60 ARG 147 A ALA 148 n 61 ALA 148 A LYS 149 n 62 LYS 149 A ILE 150 n 63 ILE 150 A LEU 151 n 64 LEU 151 A GLY 152 n 65 GLY 152 A THR 153 n 66 THR 153 A ALA 154 n 67 ALA 154 A ARG 155 n 68 ARG 155 A ILE 156 n 69 ILE 156 A GLN 157 n 70 GLN 157 A LYS 158 n 71 LYS 158 A ILE 159 n 72 ILE 159 A PRO 160 n 73 PRO 160 A GLY 161 n 74 GLY 161 A LEU 162 n 75 LEU 162 A LYS 163 n 76 LYS 163 A GLU 164 n 77 GLU 164 A LYS 165 n 78 LYS 165 A PRO 166 n 79 PRO 166 A ASP 167 n 80 ASP 167 A PRO 168 n 81 PRO 168 A LYS 169 n 82 LYS 169 A THR 170 n 83 THR 170 A VAL 171 n 84 VAL 171 A GLU 172 n 85 GLU 172 A GLU 173 n 86 GLU 173 A VAL 174 n 87 VAL 174 A ASP 175 n 88 ASP 175 A GLY 176 n 89 GLY 176 A LYS 177 n 90 LYS 177 A LEU 178 n 91 LEU 178 A LYS 179 n 92 LYS 179 A SER 180 n 93 SER 180 A LEU 181 n 94 LEU 181 A PRO 182 n 95 PRO 182 A LYS 183 n 96 LYS 183 A GLU 184 n 97 GLU 184 A LEU 185 n 98 LEU 185 A LYS 186 n 99 LYS 186 A ARG 187 n 100 ARG 187 A TYR 188 n 101 TYR 188 A LEU 189 n 102 LEU 189 A HIS 190 n 103 HIS 190 A ILE 191 n 104 ILE 191 A ALA 192 n 105 ALA 192 A ARG 193 n 106 ARG 193 A GLU 194 n 107 GLU 194 A GLY 195 n 108 GLY 195 A GLU 196 n 109 GLU 196 A ALA 197 n 110 ALA 197 A ALA 198 n 111 ALA 198 A ARG 199 n 112 ARG 199 A GLN 200 n 113 GLN 200 A HIS 201 n 114 HIS 201 A LEU 202 n 115 LEU 202 A ILE 203 n 116 ILE 203 A GLU 204 n 117 GLU 204 A ALA 205 n 118 ALA 205 A ASN 206 n 119 ASN 206 A LEU 207 n 120 LEU 207 A ARG 208 n 121 ARG 208 A LEU 209 n 122 LEU 209 A VAL 210 n 123 VAL 210 A VAL 211 n 124 VAL 211 A SER 212 n 125 SER 212 A ILE 213 n 126 ILE 213 A ALA 214 n 127 ALA 214 A LYS 215 n 128 LYS 215 A LYS 216 n 129 LYS 216 A TYR 217 n 130 TYR 217 A THR 218 n 131 THR 218 A GLY 219 n 132 GLY 219 A ARG 220 n 133 ARG 220 A GLY 221 n 134 GLY 221 A LEU 222 n 135 LEU 222 A SER 223 n 136 SER 223 A PHE 224 n 137 PHE 224 A LEU 225 n 138 LEU 225 A ASP 226 n 139 ASP 226 A LEU 227 n 140 LEU 227 A ILE 228 n 141 ILE 228 A GLN 229 n 142 GLN 229 A GLU 230 n 143 GLU 230 A GLY 231 n 144 GLY 231 A ASN 232 n 145 ASN 232 A GLN 233 n 146 GLN 233 A GLY 234 n 147 GLY 234 A LEU 235 n 148 LEU 235 A ILE 236 n 149 ILE 236 A ARG 237 n 150 ARG 237 A ALA 238 n 151 ALA 238 A VAL 239 n 152 VAL 239 A GLU 240 n 153 GLU 240 A LYS 241 n 154 LYS 241 A PHE 242 n 155 PHE 242 A GLU 243 n 156 GLU 243 A TYR 244 n 157 TYR 244 A LYS 245 n 158 LYS 245 A ARG 246 n 159 ARG 246 A ARG 247 n 160 ARG 247 A PHE 248 n 161 PHE 248 A LYS 249 n 162 LYS 249 A PHE 250 n 163 PHE 250 A SER 251 n 164 SER 251 A THR 252 n 165 THR 252 A TYR 253 n 166 TYR 253 A ALA 254 n 167 ALA 254 A THR 255 n 168 THR 255 A TRP 256 n 169 TRP 256 A TRP 257 n 170 TRP 257 A ILE 258 n 171 ILE 258 A ARG 259 n 172 ARG 259 A GLN 260 n 173 GLN 260 A ALA 261 n 174 ALA 261 A ILE 262 n 175 ILE 262 A ASN 263 n 176 ASN 263 A ARG 264 n 177 ARG 264 A ALA 265 n 178 ALA 265 A ILE 266 n 179 ILE 266 A ALA 267 n 180 ALA 267 A ASP 268 n 181 ASP 268 A GLN 269 n 182 GLN 269 A ALA 270 n 183 ALA 270 A ARG 271 n 184 ARG 271 A n 185 272 A n 186 273 A n 187 274 A n 188 275 A n 189 276 A n 190 277 A n 191 278 A n 192 279 A n 193 280 A n 194 281 A n 195 282 A n 196 283 A n 197 284 A n 198 285 A n 199 286 A n 200 287 A n 201 288 A n 202 289 A n 203 290 A n 204 291 A n 205 292 A n 206 293 A n 207 294 A n 208 295 A n 209 296 A n 210 297 A n 211 298 A n 212 299 A n 213 300 A n 214 301 A n 215 302 A n 216 303 A n 217 304 A n 218 305 A n 219 306 A n 220 307 A n 221 308 A n 222 309 A n 223 310 A n 224 311 A n 225 312 A n 226 313 A n 227 314 A n 228 315 A n 229 316 A n 230 317 A n 231 318 A n 232 319 A n 233 320 A n 234 321 A n 235 322 A n 236 323 A n 237 324 A n 238 325 A n 239 326 A n 240 327 A n 241 328 A n 242 329 A n 243 330 A n 244 331 A n 245 332 A n 1 1 B DG 2 n 2 DG 2 B DT 3 n 3 DT 3 B DA 4 n 4 DA 4 B DT 5 n 5 DT 5 B DA 6 n 6 DA 6 B DA 7 n 7 DA 7 B DT 8 n 8 DT 8 B DG 9 n 9 DG 9 B DG 10 n 10 DG 10 B DG 11 n 11 DG 11 B n 1 1 C n 2 2 C n 3 3 C n 4 4 C n 5 5 C n 6 6 C DA 7 n 7 DA 7 C DT 8 n 8 DT 8 C DG 9 n 9 DG 9 C DG 10 n 10 DG 10 C DG 11 n 11 DG 11 C author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 4 tetrameric 1850 -3 11260 3620 -24 3240 B DG 9 B O6 DG 9 1_555 B K 12 D K K 1_555 C DG 11 C O6 DG 11 1_555 70.8 B DG 9 B O6 DG 9 1_555 B K 14 F K K 1_555 B DG 10 B O6 DG 10 1_555 78.9 B DG 10 B O6 DG 10 1_555 B K 13 E K K 1_555 B DG 11 B O6 DG 11 1_555 62.6 C DG 9 C O6 DG 9 1_555 C K 13 H K K 1_555 C DG 10 C O6 DG 10 1_555 65.0 C DG 10 C O6 DG 10 1_555 C K 12 G K K 1_555 C DG 11 C O6 DG 11 1_555 75.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -y,x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_555 y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 B K 12 D K 1 B K 13 E K 1 B K 14 F K 1 C K 12 G K 1 C K 13 H K 1 A GLY 88 A GLY 1 1 Y 1 A PRO 89 A PRO 2 1 Y 1 A HIS 90 A HIS 3 1 Y 1 A MET 91 A MET 4 1 Y 1 A THR 92 A THR 5 1 Y 1 A THR 272 A THR 185 1 Y 1 A ILE 273 A ILE 186 1 Y 1 A ARG 274 A ARG 187 1 Y 1 A ILE 275 A ILE 188 1 Y 1 A PRO 276 A PRO 189 1 Y 1 A VAL 277 A VAL 190 1 Y 1 A HIS 278 A HIS 191 1 Y 1 A MET 279 A MET 192 1 Y 1 A VAL 280 A VAL 193 1 Y 1 A GLU 281 A GLU 194 1 Y 1 A THR 282 A THR 195 1 Y 1 A ILE 283 A ILE 196 1 Y 1 A ASN 284 A ASN 197 1 Y 1 A LYS 285 A LYS 198 1 Y 1 A LEU 286 A LEU 199 1 Y 1 A SER 287 A SER 200 1 Y 1 A ARG 288 A ARG 201 1 Y 1 A THR 289 A THR 202 1 Y 1 A ALA 290 A ALA 203 1 Y 1 A ARG 291 A ARG 204 1 Y 1 A GLN 292 A GLN 205 1 Y 1 A LEU 293 A LEU 206 1 Y 1 A GLN 294 A GLN 207 1 Y 1 A GLN 295 A GLN 208 1 Y 1 A GLU 296 A GLU 209 1 Y 1 A LEU 297 A LEU 210 1 Y 1 A GLY 298 A GLY 211 1 Y 1 A ARG 299 A ARG 212 1 Y 1 A GLU 300 A GLU 213 1 Y 1 A PRO 301 A PRO 214 1 Y 1 A SER 302 A SER 215 1 Y 1 A TYR 303 A TYR 216 1 Y 1 A GLU 304 A GLU 217 1 Y 1 A GLU 305 A GLU 218 1 Y 1 A ILE 306 A ILE 219 1 Y 1 A ALA 307 A ALA 220 1 Y 1 A GLU 308 A GLU 221 1 Y 1 A ALA 309 A ALA 222 1 Y 1 A MET 310 A MET 223 1 Y 1 A GLY 311 A GLY 224 1 Y 1 A PRO 312 A PRO 225 1 Y 1 A GLY 313 A GLY 226 1 Y 1 A TRP 314 A TRP 227 1 Y 1 A ASP 315 A ASP 228 1 Y 1 A ALA 316 A ALA 229 1 Y 1 A LYS 317 A LYS 230 1 Y 1 A ARG 318 A ARG 231 1 Y 1 A VAL 319 A VAL 232 1 Y 1 A GLU 320 A GLU 233 1 Y 1 A GLU 321 A GLU 234 1 Y 1 A THR 322 A THR 235 1 Y 1 A LEU 323 A LEU 236 1 Y 1 A LYS 324 A LYS 237 1 Y 1 A ILE 325 A ILE 238 1 Y 1 A ALA 326 A ALA 239 1 Y 1 A GLN 327 A GLN 240 1 Y 1 A GLU 328 A GLU 241 1 Y 1 A PRO 329 A PRO 242 1 Y 1 A VAL 330 A VAL 243 1 Y 1 A SER 331 A SER 244 1 Y 1 A LEU 332 A LEU 245 1 Y 1 B DT 1 B DT 1 1 Y 1 C DT 1 C DT 1 1 Y 1 C DG 2 C DG 2 1 Y 1 C DT 3 C DT 3 1 Y 1 C DA 4 C DA 4 1 Y 1 C DT 5 C DT 5 1 Y 1 C DA 6 C DA 6 1 Y 1 -5.22 0.70 108.00 102.78 B B B O4' C1' N9 DA DA DA 6 6 6 N 1 3.99 0.30 108.30 112.29 B B B O4' C1' N9 DA DA DA 7 7 7 N 1 2.68 0.40 110.80 113.48 B B B C4 C5 N7 DG DG DG 9 9 9 N 1 -5.02 0.60 128.60 123.58 B B B C5 C6 O6 DG DG DG 9 9 9 N 1 -4.69 0.70 108.00 103.31 B B B O4' C1' N9 DG DG DG 10 10 10 N 1 2.97 0.40 110.80 113.77 B B B C4 C5 N7 DG DG DG 10 10 10 N 1 -5.01 0.60 128.60 123.59 B B B C5 C6 O6 DG DG DG 11 11 11 N 1 4.76 0.30 108.30 113.06 C C C O4' C1' N9 DA DA DA 7 7 7 N 1 2.04 0.30 108.30 110.34 C C C O4' C1' N1 DT DT DT 8 8 8 N 1 -19.87 1.90 104.00 84.13 C C C O3' P O5' DT DG DG 8 9 9 Y 1 -19.28 2.20 105.20 85.92 C C C O3' P OP2 DT DG DG 8 9 9 Y 1 -17.00 2.20 105.20 88.20 C C C O3' P OP1 DT DG DG 8 9 9 Y 1 -4.79 0.60 128.60 123.81 C C C C5 C6 O6 DG DG DG 9 9 9 N 1 -4.53 0.60 128.60 124.07 C C C C5 C6 O6 DG DG DG 10 10 10 N 1 3.02 0.40 110.80 113.82 C C C C4 C5 N7 DG DG DG 11 11 11 N 1 -4.83 0.60 128.60 123.77 C C C C5 C6 O6 DG DG DG 11 11 11 N 1 A GLN 157 -96.58 -62.56 -9.72190 -0.00000 0.00000 -9.72190 -0.00000 19.44380 0.238 0.196 0.198 2.697 29.22 546 11419 4.780 99.3 0.310 1 1.340 MOLECULAR REPLACEMENT 0.90 1.11 PDB ENTRY 1KU2 ML FLAT BULK SOLVENT MODEL 26.45 0.34 2.697 29.22 39 1811 5 318 1449 0.009 1859 1.425 2571 21.707 743 0.120 284 0.004 276 0.2995 0.2261 2.9679 138 2639 99.00 0.2532 0.2083 3.3968 128 2654 99.00 0.2110 0.1693 4.2775 140 2712 100.00 0.2199 0.1891 29.2261 140 2868 99.00 2.697 30.000 3UGP 11450 0.0 0.000 0.10500 0.10500 1 31.6300 8.800 99.8 0.52000 2.697 2.80 6.770 0.52000 1 9.20 100.0 model building PHENIX (PHENIX.REFINE: 1.5_2) refinement PHENIX (PHENIX.REFINE: 1.5_2) data reduction HKL-2000 data scaling HKL-2000 phasing PHENIX 1.5_2 Crystal structure of RNA-polymerase sigma subunit domain 2 complexed with -10 promoter element ssDNA oligo (TATAAT) 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N 4 N N A SER 93 A SER 6 HELX_P A GLN 105 A GLN 18 1 1 13 A THR 110 A THR 23 HELX_P A GLY 136 A GLY 49 1 2 27 A ASP 138 A ASP 51 HELX_P A LYS 149 A LYS 62 1 3 12 A ILE 150 A ILE 63 HELX_P A ALA 154 A ALA 67 5 4 5 A ASP 167 A ASP 80 HELX_P A SER 180 A SER 93 1 5 14 A PRO 182 A PRO 95 HELX_P A ALA 205 A ALA 118 1 6 24 A ASN 206 A ASN 119 HELX_P A LYS 216 A LYS 129 1 7 11 A SER 223 A SER 136 HELX_P A PHE 242 A PHE 155 1 8 20 A GLU 243 A GLU 156 HELX_P A ARG 247 A ARG 160 5 9 5 A LYS 249 A LYS 162 HELX_P A ALA 270 A ALA 183 1 10 22 metalc 3.015 B DG 9 B O6 DG 9 1_555 B K 12 D K K 1_555 metalc 3.149 B DG 9 B O6 DG 9 1_555 B K 14 F K K 1_555 metalc 3.248 B DG 10 B O6 DG 10 1_555 B K 13 E K K 1_555 metalc 2.943 B DG 10 B O6 DG 10 1_555 B K 14 F K K 1_555 metalc 2.842 B DG 11 B O6 DG 11 1_555 B K 13 E K K 1_555 metalc 3.098 B K 12 D K K 1_555 C DG 11 C O6 DG 11 1_555 metalc 2.890 C DG 9 C O6 DG 9 1_555 C K 13 H K K 1_555 metalc 2.963 C DG 10 C O6 DG 10 1_555 C K 12 G K K 1_555 metalc 3.420 C DG 10 C O6 DG 10 1_555 C K 13 H K K 1_555 metalc 3.092 C DG 11 C O6 DG 11 1_555 C K 12 G K K 1_555 TRANSCRIPTION/DNA protein-DNA complex, bacterial promoter opening, G-quartet, G-quadruplex, DNA binding, TRANSCRIPTION-DNA complex Q9EZJ8_THEAQ UNP 1 92 Q9EZJ8 TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS L 3UGP PDB 2 3UGP TGTATAATGGG 92 332 3UGP 92 332 Q9EZJ8 A 1 5 245 1 11 3UGP 1 11 3UGP B 2 1 11 1 11 3UGP 1 11 3UGP C 2 1 11 1 expression tag GLY 88 3UGP A Q9EZJ8 UNP 1 1 expression tag PRO 89 3UGP A Q9EZJ8 UNP 2 1 expression tag HIS 90 3UGP A Q9EZJ8 UNP 3 1 expression tag MET 91 3UGP A Q9EZJ8 UNP 4 BINDING SITE FOR RESIDUE K B 12 B K 12 Software 16 BINDING SITE FOR RESIDUE K B 13 B K 13 Software 8 BINDING SITE FOR RESIDUE K B 14 B K 14 Software 12 BINDING SITE FOR RESIDUE K C 12 C K 12 Software 12 BINDING SITE FOR RESIDUE K C 13 C K 13 Software 8 B DG 9 B DG 9 16 2_555 B DG 9 B DG 9 16 3_555 B DG 9 B DG 9 16 1_555 B DG 9 B DG 9 16 4_555 B K 14 F K 16 1_555 B K 14 F K 16 2_555 B K 14 F K 16 3_555 B K 14 F K 16 4_555 C DG 11 C DG 11 16 4_555 C DG 11 C DG 11 16 1_555 C DG 11 C DG 11 16 2_555 C DG 11 C DG 11 16 3_555 C K 12 G K 16 3_555 C K 12 G K 16 4_555 C K 12 G K 16 2_555 C K 12 G K 16 1_555 B DG 10 B DG 10 8 2_555 B DG 10 B DG 10 8 1_555 B DG 10 B DG 10 8 3_555 B DG 10 B DG 10 8 4_555 B DG 11 B DG 11 8 1_555 B DG 11 B DG 11 8 2_555 B DG 11 B DG 11 8 3_555 B DG 11 B DG 11 8 4_555 B DG 9 B DG 9 12 2_555 B DG 9 B DG 9 12 3_555 B DG 9 B DG 9 12 1_555 B DG 9 B DG 9 12 4_555 B DG 10 B DG 10 12 4_555 B DG 10 B DG 10 12 2_555 B DG 10 B DG 10 12 1_555 B DG 10 B DG 10 12 3_555 B K 12 D K 12 3_555 B K 12 D K 12 4_555 B K 12 D K 12 2_555 B K 12 D K 12 1_555 B K 12 D K 12 1_555 B K 12 D K 12 2_555 B K 12 D K 12 3_555 B K 12 D K 12 4_555 C DG 10 C DG 10 12 1_555 C DG 10 C DG 10 12 4_555 C DG 10 C DG 10 12 3_555 C DG 10 C DG 10 12 2_555 C DG 11 C DG 11 12 4_555 C DG 11 C DG 11 12 3_555 C DG 11 C DG 11 12 1_555 C DG 11 C DG 11 12 2_555 C DG 9 C DG 9 8 3_555 C DG 9 C DG 9 8 1_555 C DG 9 C DG 9 8 4_555 C DG 9 C DG 9 8 2_555 C DG 10 C DG 10 8 4_555 C DG 10 C DG 10 8 2_555 C DG 10 C DG 10 8 1_555 C DG 10 C DG 10 8 3_555 89 P 4 2 2