0.010309
0.005952
0.000000
-0.000000
0.011903
0.000000
0.000000
-0.000000
0.012361
0.000000
0.000000
0.000000
Parker, L.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
97.006
97.006
80.898
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C17 H18 N4 O
294.351
2-{4-[(3-aminopropyl)amino]quinazolin-2-yl}phenol
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
CL
N
76
N
N
N
77
R
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
S
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
C
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
Y
158
N
C
Y
159
N
N
Y
160
N
C
Y
161
N
C
Y
162
N
N
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
N
N
178
S
C
N
179
N
C
N
180
N
O
N
181
S
C
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
N
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
S
N
253
N
C
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
N
312
N
O
Y
313
N
C
Y
314
N
N
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
N
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
N
323
N
N
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
N
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
O
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
S
N
361
N
O
N
362
N
O
N
363
N
O
N
364
N
O
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
R
C
N
370
N
O
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
N
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
N
420
N
O
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
C
N
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
Y
290
N
doub
Y
291
N
sing
Y
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
doub
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
Y
301
N
doub
N
302
N
sing
Y
303
N
sing
Y
304
N
sing
Y
305
N
doub
Y
306
N
sing
Y
307
N
doub
Y
308
N
sing
Y
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
Y
376
N
doub
Y
377
N
sing
Y
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
Y
404
N
doub
Y
405
N
sing
Y
406
N
sing
N
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
417
240
252
10.1016/j.jmb.2012.01.036
22306408
A novel pim-1 kinase inhibitor targeting residues that bind the substrate Peptide.
2012
10.2210/pdb3uix/pdb
pdb_00003uix
100
1
CCD
2009-04-20
RAYONIX MX-225
FIXED EXIT SI DOUBLE CRYSTAL MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL32B2
SPring-8
1.0
SYNCHROTRON
SPRING-8 BEAMLINE BL32B2
34187.727
Proto-oncogene serine/threonine-protein kinase pim-1
2.7.11.1
Protein kinase domain (UNP RESIDUES 120-404)
1
man
polymer
294.351
2-{4-[(3-aminopropyl)amino]quinazolin-2-yl}phenol
1
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
241
nat
water
no
no
MKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL
DWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDF
GSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLI
RWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKSGPSSGENLYFQ
MKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL
DWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDF
GSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLI
RWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKSGPSSGENLYFQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
PIM1
9606
Homo sapiens
cell-free protein synthesis
plasmid
pCR2.1-TOPO
1
3.21
61.73
VAPOR DIFFUSION, HANGING DROP
5.5
100mM CITRATE BUFFER PH 5.5, 200mM NACL, 1M NH4HPO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-04-11
1
1
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2011-11-06
REL
REL
Q17
2-{4-[(3-aminopropyl)amino]quinazolin-2-yl}phenol
CL
CHLORIDE ION
SO4
SULFATE ION
CA
CALCIUM ION
GOL
GLYCEROL
HOH
water
3A99
PDB
experimental model
017
400
2
Q17
Q17
400
A
CL
401
3
CL
CL
401
A
CL
402
3
CL
CL
402
A
SO4
403
4
SO4
SO4
403
A
CA
404
5
CA
CA
404
A
GOL
405
6
GOL
GOL
405
A
HOH
1
7
HOH
HOH
1
A
HOH
2
7
HOH
HOH
2
A
HOH
3
7
HOH
HOH
3
A
HOH
4
7
HOH
HOH
4
A
HOH
5
7
HOH
HOH
5
A
HOH
6
7
HOH
HOH
6
A
HOH
7
7
HOH
HOH
7
A
HOH
8
7
HOH
HOH
8
A
HOH
9
7
HOH
HOH
9
A
HOH
10
7
HOH
HOH
10
A
HOH
11
7
HOH
HOH
11
A
HOH
12
7
HOH
HOH
12
A
HOH
13
7
HOH
HOH
13
A
HOH
14
7
HOH
HOH
14
A
HOH
15
7
HOH
HOH
15
A
HOH
16
7
HOH
HOH
16
A
HOH
17
7
HOH
HOH
17
A
HOH
18
7
HOH
HOH
18
A
HOH
19
7
HOH
HOH
19
A
HOH
20
7
HOH
HOH
20
A
HOH
21
7
HOH
HOH
21
A
HOH
22
7
HOH
HOH
22
A
HOH
23
7
HOH
HOH
23
A
HOH
24
7
HOH
HOH
24
A
HOH
25
7
HOH
HOH
25
A
HOH
26
7
HOH
HOH
26
A
HOH
27
7
HOH
HOH
27
A
HOH
28
7
HOH
HOH
326
A
HOH
29
7
HOH
HOH
327
A
HOH
30
7
HOH
HOH
328
A
HOH
31
7
HOH
HOH
329
A
HOH
32
7
HOH
HOH
330
A
HOH
33
7
HOH
HOH
331
A
HOH
34
7
HOH
HOH
332
A
HOH
35
7
HOH
HOH
333
A
HOH
36
7
HOH
HOH
334
A
HOH
37
7
HOH
HOH
335
A
HOH
38
7
HOH
HOH
336
A
HOH
39
7
HOH
HOH
337
A
HOH
40
7
HOH
HOH
338
A
HOH
41
7
HOH
HOH
339
A
HOH
42
7
HOH
HOH
340
A
HOH
43
7
HOH
HOH
341
A
HOH
44
7
HOH
HOH
342
A
HOH
45
7
HOH
HOH
343
A
HOH
46
7
HOH
HOH
344
A
HOH
47
7
HOH
HOH
345
A
HOH
48
7
HOH
HOH
346
A
HOH
49
7
HOH
HOH
347
A
HOH
50
7
HOH
HOH
348
A
HOH
51
7
HOH
HOH
349
A
HOH
52
7
HOH
HOH
350
A
HOH
53
7
HOH
HOH
351
A
HOH
54
7
HOH
HOH
352
A
HOH
55
7
HOH
HOH
353
A
HOH
56
7
HOH
HOH
354
A
HOH
57
7
HOH
HOH
355
A
HOH
58
7
HOH
HOH
356
A
HOH
59
7
HOH
HOH
357
A
HOH
60
7
HOH
HOH
358
A
HOH
61
7
HOH
HOH
359
A
HOH
62
7
HOH
HOH
360
A
HOH
63
7
HOH
HOH
361
A
HOH
64
7
HOH
HOH
362
A
HOH
65
7
HOH
HOH
363
A
HOH
66
7
HOH
HOH
364
A
HOH
67
7
HOH
HOH
365
A
HOH
68
7
HOH
HOH
366
A
HOH
69
7
HOH
HOH
367
A
HOH
70
7
HOH
HOH
368
A
HOH
71
7
HOH
HOH
369
A
HOH
72
7
HOH
HOH
370
A
HOH
73
7
HOH
HOH
371
A
HOH
74
7
HOH
HOH
372
A
HOH
75
7
HOH
HOH
373
A
HOH
76
7
HOH
HOH
374
A
HOH
77
7
HOH
HOH
375
A
HOH
78
7
HOH
HOH
376
A
HOH
79
7
HOH
HOH
377
A
HOH
80
7
HOH
HOH
378
A
HOH
81
7
HOH
HOH
379
A
HOH
82
7
HOH
HOH
380
A
HOH
83
7
HOH
HOH
381
A
HOH
84
7
HOH
HOH
382
A
HOH
85
7
HOH
HOH
383
A
HOH
86
7
HOH
HOH
384
A
HOH
87
7
HOH
HOH
385
A
HOH
88
7
HOH
HOH
386
A
HOH
89
7
HOH
HOH
387
A
HOH
90
7
HOH
HOH
388
A
HOH
91
7
HOH
HOH
389
A
HOH
92
7
HOH
HOH
390
A
HOH
93
7
HOH
HOH
391
A
HOH
94
7
HOH
HOH
392
A
HOH
95
7
HOH
HOH
393
A
HOH
96
7
HOH
HOH
394
A
HOH
97
7
HOH
HOH
395
A
HOH
98
7
HOH
HOH
396
A
HOH
99
7
HOH
HOH
397
A
HOH
100
7
HOH
HOH
398
A
HOH
101
7
HOH
HOH
399
A
HOH
102
7
HOH
HOH
406
A
HOH
103
7
HOH
HOH
407
A
HOH
104
7
HOH
HOH
408
A
HOH
105
7
HOH
HOH
409
A
HOH
106
7
HOH
HOH
410
A
HOH
107
7
HOH
HOH
411
A
HOH
108
7
HOH
HOH
412
A
HOH
109
7
HOH
HOH
413
A
HOH
110
7
HOH
HOH
414
A
HOH
111
7
HOH
HOH
415
A
HOH
112
7
HOH
HOH
416
A
HOH
113
7
HOH
HOH
417
A
HOH
114
7
HOH
HOH
418
A
HOH
115
7
HOH
HOH
419
A
HOH
116
7
HOH
HOH
420
A
HOH
117
7
HOH
HOH
421
A
HOH
118
7
HOH
HOH
422
A
HOH
119
7
HOH
HOH
423
A
HOH
120
7
HOH
HOH
424
A
HOH
121
7
HOH
HOH
425
A
HOH
122
7
HOH
HOH
426
A
HOH
123
7
HOH
HOH
427
A
HOH
124
7
HOH
HOH
428
A
HOH
125
7
HOH
HOH
429
A
HOH
126
7
HOH
HOH
430
A
HOH
127
7
HOH
HOH
431
A
HOH
128
7
HOH
HOH
432
A
HOH
129
7
HOH
HOH
433
A
HOH
130
7
HOH
HOH
434
A
HOH
131
7
HOH
HOH
435
A
HOH
132
7
HOH
HOH
436
A
HOH
133
7
HOH
HOH
437
A
HOH
134
7
HOH
HOH
438
A
HOH
135
7
HOH
HOH
439
A
HOH
136
7
HOH
HOH
440
A
HOH
137
7
HOH
HOH
441
A
HOH
138
7
HOH
HOH
442
A
HOH
139
7
HOH
HOH
443
A
HOH
140
7
HOH
HOH
444
A
HOH
141
7
HOH
HOH
445
A
HOH
142
7
HOH
HOH
446
A
HOH
143
7
HOH
HOH
447
A
HOH
144
7
HOH
HOH
448
A
HOH
145
7
HOH
HOH
449
A
HOH
146
7
HOH
HOH
450
A
HOH
147
7
HOH
HOH
451
A
HOH
148
7
HOH
HOH
452
A
HOH
149
7
HOH
HOH
453
A
HOH
150
7
HOH
HOH
454
A
HOH
151
7
HOH
HOH
455
A
HOH
152
7
HOH
HOH
456
A
HOH
153
7
HOH
HOH
457
A
HOH
154
7
HOH
HOH
458
A
HOH
155
7
HOH
HOH
459
A
HOH
156
7
HOH
HOH
460
A
HOH
157
7
HOH
HOH
461
A
HOH
158
7
HOH
HOH
462
A
HOH
159
7
HOH
HOH
463
A
HOH
160
7
HOH
HOH
464
A
HOH
161
7
HOH
HOH
465
A
HOH
162
7
HOH
HOH
466
A
HOH
163
7
HOH
HOH
467
A
HOH
164
7
HOH
HOH
468
A
HOH
165
7
HOH
HOH
469
A
HOH
166
7
HOH
HOH
470
A
HOH
167
7
HOH
HOH
471
A
HOH
168
7
HOH
HOH
472
A
HOH
169
7
HOH
HOH
473
A
HOH
170
7
HOH
HOH
474
A
HOH
171
7
HOH
HOH
475
A
HOH
172
7
HOH
HOH
476
A
HOH
173
7
HOH
HOH
477
A
HOH
174
7
HOH
HOH
478
A
HOH
175
7
HOH
HOH
479
A
HOH
176
7
HOH
HOH
480
A
HOH
177
7
HOH
HOH
481
A
HOH
178
7
HOH
HOH
482
A
HOH
179
7
HOH
HOH
483
A
HOH
180
7
HOH
HOH
484
A
HOH
181
7
HOH
HOH
485
A
HOH
182
7
HOH
HOH
486
A
HOH
183
7
HOH
HOH
487
A
HOH
184
7
HOH
HOH
488
A
HOH
185
7
HOH
HOH
489
A
HOH
186
7
HOH
HOH
490
A
HOH
187
7
HOH
HOH
491
A
HOH
188
7
HOH
HOH
492
A
HOH
189
7
HOH
HOH
493
A
HOH
190
7
HOH
HOH
494
A
HOH
191
7
HOH
HOH
495
A
HOH
192
7
HOH
HOH
496
A
HOH
193
7
HOH
HOH
497
A
HOH
194
7
HOH
HOH
498
A
HOH
195
7
HOH
HOH
499
A
HOH
196
7
HOH
HOH
500
A
HOH
197
7
HOH
HOH
501
A
HOH
198
7
HOH
HOH
502
A
HOH
199
7
HOH
HOH
503
A
HOH
200
7
HOH
HOH
504
A
HOH
201
7
HOH
HOH
505
A
HOH
202
7
HOH
HOH
506
A
HOH
203
7
HOH
HOH
507
A
HOH
204
7
HOH
HOH
508
A
HOH
205
7
HOH
HOH
509
A
HOH
206
7
HOH
HOH
510
A
HOH
207
7
HOH
HOH
511
A
HOH
208
7
HOH
HOH
512
A
HOH
209
7
HOH
HOH
513
A
HOH
210
7
HOH
HOH
514
A
HOH
211
7
HOH
HOH
515
A
HOH
212
7
HOH
HOH
516
A
HOH
213
7
HOH
HOH
517
A
HOH
214
7
HOH
HOH
518
A
HOH
215
7
HOH
HOH
519
A
HOH
216
7
HOH
HOH
520
A
HOH
217
7
HOH
HOH
521
A
HOH
218
7
HOH
HOH
522
A
HOH
219
7
HOH
HOH
523
A
HOH
220
7
HOH
HOH
524
A
HOH
221
7
HOH
HOH
525
A
HOH
222
7
HOH
HOH
526
A
HOH
223
7
HOH
HOH
527
A
HOH
224
7
HOH
HOH
528
A
HOH
225
7
HOH
HOH
529
A
HOH
226
7
HOH
HOH
530
A
HOH
227
7
HOH
HOH
531
A
HOH
228
7
HOH
HOH
532
A
HOH
229
7
HOH
HOH
533
A
HOH
230
7
HOH
HOH
534
A
HOH
231
7
HOH
HOH
535
A
HOH
232
7
HOH
HOH
536
A
HOH
233
7
HOH
HOH
537
A
HOH
234
7
HOH
HOH
538
A
HOH
235
7
HOH
HOH
539
A
HOH
236
7
HOH
HOH
540
A
HOH
237
7
HOH
HOH
541
A
HOH
238
7
HOH
HOH
542
A
HOH
239
7
HOH
HOH
543
A
HOH
240
7
HOH
HOH
544
A
HOH
241
7
HOH
HOH
545
A
26.380
2.500
2.500
29.140
29.140
Phaser MODE: MR_AUTO
n
1
28
A
n
2
29
A
n
3
30
A
n
4
31
A
n
5
32
A
n
6
33
A
n
7
34
A
n
8
35
A
n
9
36
A
GLN
37
n
10
GLN
37
A
TYR
38
n
11
TYR
38
A
GLN
39
n
12
GLN
39
A
VAL
40
n
13
VAL
40
A
GLY
41
n
14
GLY
41
A
PRO
42
n
15
PRO
42
A
LEU
43
n
16
LEU
43
A
LEU
44
n
17
LEU
44
A
GLY
45
n
18
GLY
45
A
SER
46
n
19
SER
46
A
GLY
47
n
20
GLY
47
A
GLY
48
n
21
GLY
48
A
PHE
49
n
22
PHE
49
A
GLY
50
n
23
GLY
50
A
SER
51
n
24
SER
51
A
VAL
52
n
25
VAL
52
A
TYR
53
n
26
TYR
53
A
SER
54
n
27
SER
54
A
GLY
55
n
28
GLY
55
A
ILE
56
n
29
ILE
56
A
ARG
57
n
30
ARG
57
A
VAL
58
n
31
VAL
58
A
SER
59
n
32
SER
59
A
ASP
60
n
33
ASP
60
A
ASN
61
n
34
ASN
61
A
LEU
62
n
35
LEU
62
A
PRO
63
n
36
PRO
63
A
VAL
64
n
37
VAL
64
A
ALA
65
n
38
ALA
65
A
ILE
66
n
39
ILE
66
A
LYS
67
n
40
LYS
67
A
HIS
68
n
41
HIS
68
A
VAL
69
n
42
VAL
69
A
GLU
70
n
43
GLU
70
A
LYS
71
n
44
LYS
71
A
ASP
72
n
45
ASP
72
A
ARG
73
n
46
ARG
73
A
ILE
74
n
47
ILE
74
A
SER
75
n
48
SER
75
A
ASP
76
n
49
ASP
76
A
TRP
77
n
50
TRP
77
A
GLY
78
n
51
GLY
78
A
GLU
79
n
52
GLU
79
A
LEU
80
n
53
LEU
80
A
n
54
81
A
n
55
82
A
n
56
83
A
THR
84
n
57
THR
84
A
ARG
85
n
58
ARG
85
A
VAL
86
n
59
VAL
86
A
PRO
87
n
60
PRO
87
A
MET
88
n
61
MET
88
A
GLU
89
n
62
GLU
89
A
VAL
90
n
63
VAL
90
A
VAL
91
n
64
VAL
91
A
LEU
92
n
65
LEU
92
A
LEU
93
n
66
LEU
93
A
LYS
94
n
67
LYS
94
A
LYS
95
n
68
LYS
95
A
VAL
96
n
69
VAL
96
A
SER
97
n
70
SER
97
A
SER
98
n
71
SER
98
A
GLY
99
n
72
GLY
99
A
PHE
100
n
73
PHE
100
A
SER
101
n
74
SER
101
A
GLY
102
n
75
GLY
102
A
VAL
103
n
76
VAL
103
A
ILE
104
n
77
ILE
104
A
ARG
105
n
78
ARG
105
A
LEU
106
n
79
LEU
106
A
LEU
107
n
80
LEU
107
A
ASP
108
n
81
ASP
108
A
TRP
109
n
82
TRP
109
A
PHE
110
n
83
PHE
110
A
GLU
111
n
84
GLU
111
A
ARG
112
n
85
ARG
112
A
PRO
113
n
86
PRO
113
A
ASP
114
n
87
ASP
114
A
SER
115
n
88
SER
115
A
PHE
116
n
89
PHE
116
A
VAL
117
n
90
VAL
117
A
LEU
118
n
91
LEU
118
A
ILE
119
n
92
ILE
119
A
LEU
120
n
93
LEU
120
A
GLU
121
n
94
GLU
121
A
ARG
122
n
95
ARG
122
A
PRO
123
n
96
PRO
123
A
GLU
124
n
97
GLU
124
A
PRO
125
n
98
PRO
125
A
VAL
126
n
99
VAL
126
A
GLN
127
n
100
GLN
127
A
ASP
128
n
101
ASP
128
A
LEU
129
n
102
LEU
129
A
PHE
130
n
103
PHE
130
A
ASP
131
n
104
ASP
131
A
PHE
132
n
105
PHE
132
A
ILE
133
n
106
ILE
133
A
THR
134
n
107
THR
134
A
GLU
135
n
108
GLU
135
A
ARG
136
n
109
ARG
136
A
GLY
137
n
110
GLY
137
A
ALA
138
n
111
ALA
138
A
LEU
139
n
112
LEU
139
A
GLN
140
n
113
GLN
140
A
GLU
141
n
114
GLU
141
A
GLU
142
n
115
GLU
142
A
LEU
143
n
116
LEU
143
A
ALA
144
n
117
ALA
144
A
ARG
145
n
118
ARG
145
A
SER
146
n
119
SER
146
A
PHE
147
n
120
PHE
147
A
PHE
148
n
121
PHE
148
A
TRP
149
n
122
TRP
149
A
GLN
150
n
123
GLN
150
A
VAL
151
n
124
VAL
151
A
LEU
152
n
125
LEU
152
A
GLU
153
n
126
GLU
153
A
ALA
154
n
127
ALA
154
A
VAL
155
n
128
VAL
155
A
ARG
156
n
129
ARG
156
A
HIS
157
n
130
HIS
157
A
CYS
158
n
131
CYS
158
A
HIS
159
n
132
HIS
159
A
ASN
160
n
133
ASN
160
A
CYS
161
n
134
CYS
161
A
GLY
162
n
135
GLY
162
A
VAL
163
n
136
VAL
163
A
LEU
164
n
137
LEU
164
A
HIS
165
n
138
HIS
165
A
ARG
166
n
139
ARG
166
A
ASP
167
n
140
ASP
167
A
ILE
168
n
141
ILE
168
A
LYS
169
n
142
LYS
169
A
ASP
170
n
143
ASP
170
A
GLU
171
n
144
GLU
171
A
ASN
172
n
145
ASN
172
A
ILE
173
n
146
ILE
173
A
LEU
174
n
147
LEU
174
A
ILE
175
n
148
ILE
175
A
ASP
176
n
149
ASP
176
A
LEU
177
n
150
LEU
177
A
ASN
178
n
151
ASN
178
A
ARG
179
n
152
ARG
179
A
GLY
180
n
153
GLY
180
A
GLU
181
n
154
GLU
181
A
LEU
182
n
155
LEU
182
A
LYS
183
n
156
LYS
183
A
LEU
184
n
157
LEU
184
A
ILE
185
n
158
ILE
185
A
ASP
186
n
159
ASP
186
A
PHE
187
n
160
PHE
187
A
GLY
188
n
161
GLY
188
A
SER
189
n
162
SER
189
A
GLY
190
n
163
GLY
190
A
ALA
191
n
164
ALA
191
A
LEU
192
n
165
LEU
192
A
LEU
193
n
166
LEU
193
A
LYS
194
n
167
LYS
194
A
ASP
195
n
168
ASP
195
A
THR
196
n
169
THR
196
A
VAL
197
n
170
VAL
197
A
TYR
198
n
171
TYR
198
A
THR
199
n
172
THR
199
A
ASP
200
n
173
ASP
200
A
PHE
201
n
174
PHE
201
A
ASP
202
n
175
ASP
202
A
GLY
203
n
176
GLY
203
A
THR
204
n
177
THR
204
A
ARG
205
n
178
ARG
205
A
VAL
206
n
179
VAL
206
A
TYR
207
n
180
TYR
207
A
SER
208
n
181
SER
208
A
PRO
209
n
182
PRO
209
A
PRO
210
n
183
PRO
210
A
GLU
211
n
184
GLU
211
A
TRP
212
n
185
TRP
212
A
ILE
213
n
186
ILE
213
A
ARG
214
n
187
ARG
214
A
TYR
215
n
188
TYR
215
A
HIS
216
n
189
HIS
216
A
ARG
217
n
190
ARG
217
A
TYR
218
n
191
TYR
218
A
HIS
219
n
192
HIS
219
A
GLY
220
n
193
GLY
220
A
ARG
221
n
194
ARG
221
A
SER
222
n
195
SER
222
A
ALA
223
n
196
ALA
223
A
ALA
224
n
197
ALA
224
A
VAL
225
n
198
VAL
225
A
TRP
226
n
199
TRP
226
A
SER
227
n
200
SER
227
A
LEU
228
n
201
LEU
228
A
GLY
229
n
202
GLY
229
A
ILE
230
n
203
ILE
230
A
LEU
231
n
204
LEU
231
A
LEU
232
n
205
LEU
232
A
TYR
233
n
206
TYR
233
A
ASP
234
n
207
ASP
234
A
MET
235
n
208
MET
235
A
VAL
236
n
209
VAL
236
A
CYS
237
n
210
CYS
237
A
GLY
238
n
211
GLY
238
A
ASP
239
n
212
ASP
239
A
ILE
240
n
213
ILE
240
A
PRO
241
n
214
PRO
241
A
PHE
242
n
215
PHE
242
A
GLU
243
n
216
GLU
243
A
HIS
244
n
217
HIS
244
A
ASP
245
n
218
ASP
245
A
GLU
246
n
219
GLU
246
A
GLU
247
n
220
GLU
247
A
ILE
248
n
221
ILE
248
A
ILE
249
n
222
ILE
249
A
ARG
250
n
223
ARG
250
A
GLY
251
n
224
GLY
251
A
GLN
252
n
225
GLN
252
A
VAL
253
n
226
VAL
253
A
PHE
254
n
227
PHE
254
A
PHE
255
n
228
PHE
255
A
ARG
256
n
229
ARG
256
A
GLN
257
n
230
GLN
257
A
ARG
258
n
231
ARG
258
A
VAL
259
n
232
VAL
259
A
SER
260
n
233
SER
260
A
SER
261
n
234
SER
261
A
GLU
262
n
235
GLU
262
A
CYS
263
n
236
CYS
263
A
GLN
264
n
237
GLN
264
A
HIS
265
n
238
HIS
265
A
LEU
266
n
239
LEU
266
A
ILE
267
n
240
ILE
267
A
ARG
268
n
241
ARG
268
A
TRP
269
n
242
TRP
269
A
CYS
270
n
243
CYS
270
A
LEU
271
n
244
LEU
271
A
ALA
272
n
245
ALA
272
A
LEU
273
n
246
LEU
273
A
ARG
274
n
247
ARG
274
A
PRO
275
n
248
PRO
275
A
SER
276
n
249
SER
276
A
ASP
277
n
250
ASP
277
A
ARG
278
n
251
ARG
278
A
PRO
279
n
252
PRO
279
A
THR
280
n
253
THR
280
A
PHE
281
n
254
PHE
281
A
GLU
282
n
255
GLU
282
A
GLU
283
n
256
GLU
283
A
ILE
284
n
257
ILE
284
A
GLN
285
n
258
GLN
285
A
ASN
286
n
259
ASN
286
A
HIS
287
n
260
HIS
287
A
PRO
288
n
261
PRO
288
A
TRP
289
n
262
TRP
289
A
MET
290
n
263
MET
290
A
GLN
291
n
264
GLN
291
A
ASP
292
n
265
ASP
292
A
VAL
293
n
266
VAL
293
A
LEU
294
n
267
LEU
294
A
LEU
295
n
268
LEU
295
A
PRO
296
n
269
PRO
296
A
GLN
297
n
270
GLN
297
A
GLU
298
n
271
GLU
298
A
THR
299
n
272
THR
299
A
ALA
300
n
273
ALA
300
A
GLU
301
n
274
GLU
301
A
ILE
302
n
275
ILE
302
A
HIS
303
n
276
HIS
303
A
LEU
304
n
277
LEU
304
A
HIS
305
n
278
HIS
305
A
n
279
306
A
n
280
307
A
n
281
308
A
n
282
309
A
n
283
310
A
n
284
311
A
n
285
312
A
n
286
313
A
n
287
314
A
n
288
315
A
n
289
316
A
n
290
317
A
n
291
318
A
n
292
319
A
n
293
320
A
n
294
321
A
n
295
322
A
n
296
323
A
n
297
324
A
n
298
325
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
41
A
N
GLY
14
A
O
SER
54
A
O
SER
27
A
N
TYR
53
A
N
TYR
26
A
O
ILE
66
A
O
ILE
39
A
N
ALA
65
A
N
ALA
38
A
O
LEU
120
A
O
LEU
93
A
O
ILE
119
A
O
ILE
92
A
N
ASP
108
A
N
ASP
81
A
N
GLY
78
A
N
GLY
51
A
O
VAL
86
A
O
VAL
59
A
N
GLN
127
A
N
GLN
100
A
O
ILE
175
A
O
ILE
148
A
N
LEU
174
A
N
LEU
147
A
O
LYS
183
A
O
LYS
156
A
N
LEU
164
A
N
LEU
137
A
O
ALA
191
A
O
ALA
164
1
A
CG
GLU
79
A
CG
GLU
52
1
Y
1
A
CD
GLU
79
A
CD
GLU
52
1
Y
1
A
OE1
GLU
79
A
OE1
GLU
52
1
Y
1
A
OE2
GLU
79
A
OE2
GLU
52
1
Y
1
A
CG
LEU
80
A
CG
LEU
53
1
Y
1
A
CD1
LEU
80
A
CD1
LEU
53
1
Y
1
A
CD2
LEU
80
A
CD2
LEU
53
1
Y
1
A
MET
28
A
MET
1
1
Y
1
A
LYS
29
A
LYS
2
1
Y
1
A
GLU
30
A
GLU
3
1
Y
1
A
LYS
31
A
LYS
4
1
Y
1
A
GLU
32
A
GLU
5
1
Y
1
A
PRO
33
A
PRO
6
1
Y
1
A
LEU
34
A
LEU
7
1
Y
1
A
GLU
35
A
GLU
8
1
Y
1
A
SER
36
A
SER
9
1
Y
1
A
PRO
81
A
PRO
54
1
Y
1
A
ASN
82
A
ASN
55
1
Y
1
A
GLY
83
A
GLY
56
1
Y
1
A
SER
306
A
SER
279
1
Y
1
A
LEU
307
A
LEU
280
1
Y
1
A
SER
308
A
SER
281
1
Y
1
A
PRO
309
A
PRO
282
1
Y
1
A
GLY
310
A
GLY
283
1
Y
1
A
PRO
311
A
PRO
284
1
Y
1
A
SER
312
A
SER
285
1
Y
1
A
LYS
313
A
LYS
286
1
Y
1
A
SER
314
A
SER
287
1
Y
1
A
GLY
315
A
GLY
288
1
Y
1
A
PRO
316
A
PRO
289
1
Y
1
A
SER
317
A
SER
290
1
Y
1
A
SER
318
A
SER
291
1
Y
1
A
GLY
319
A
GLY
292
1
Y
1
A
GLU
320
A
GLU
293
1
Y
1
A
ASN
321
A
ASN
294
1
Y
1
A
LEU
322
A
LEU
295
1
Y
1
A
TYR
323
A
TYR
296
1
Y
1
A
PHE
324
A
PHE
297
1
Y
1
A
GLN
325
A
GLN
298
1
Y
1
A
SER
101
-170.03
-174.01
1
A
ASP
167
-146.30
44.32
1
A
ASP
186
65.66
77.49
66.540
30.7977
3.860
0.8600
0.4300
-0.0000
0.8600
-0.0000
-1.3000
0.9590
0.9410
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES
0.2011
0.1664
0.1682
2.2000
29.1400
1102
20930
5.0000
99.9900
0.2011
0.1679
1.000
0.400
0.8830
3.6620
0.0970
0.1771
0.1551
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1550
0.8000
0.8000
1.4000
3A99
MAXIMUM LIKELIHOOD
MASK
2.2000
29.1400
241
2445
36
0
2168
0.014
0.021
2305
1.294
1.960
3134
5.666
5.000
276
34.174
22.941
119
13.041
15.000
381
16.469
15.000
22
0.096
0.200
331
0.006
0.021
1791
0.861
1.500
1343
1.661
2.000
2181
2.406
3.000
962
3.917
4.500
948
0.2080
0.1770
2.2570
84
1540
1624
1540
20
100.0000
34.61
2.200
29.14
3UIX
22062
0.083
0.083
1
33.800
22.800
100.000
0.437
0.427
2.200
2.320
1.800
72397
3189
0.091
0.437
0.427
1
9.000
22.700
100.000
0.319
0.312
2.320
2.460
2.400
69121
3031
0.066
0.319
0.312
1
12.400
22.800
100.000
0.238
0.232
2.460
2.630
3.200
65324
2863
0.050
0.238
0.232
1
16.100
22.800
100.000
0.163
0.160
2.630
2.840
4.700
60862
2658
0.034
0.163
0.160
1
21.900
22.900
100.000
0.114
0.112
2.840
3.110
6.500
56225
2455
0.024
0.114
0.112
1
31.300
22.900
100.000
0.088
0.086
3.110
3.480
7.500
50848
2220
0.018
0.088
0.086
1
45.400
22.900
100.000
0.063
0.062
3.480
4.020
10.300
45080
1967
0.013
0.063
0.062
1
59.700
22.900
100.000
0.040
0.039
4.020
4.920
15.500
37929
1658
0.008
0.040
0.039
1
72.300
22.900
100.000
0.038
0.037
4.920
6.960
16.400
29524
1302
0.008
0.038
0.037
1
77.900
22.700
100.000
0.037
0.036
6.960
29.557
14.900
15595
719
0.008
0.037
0.036
1
82.100
21.700
98.700
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
21/9/2006
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.2.25
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Mon Jan 7 03:55:00 2008
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.1.2
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data reduction
MOSFLM
Crystal structure of Pim1 kinase in complex with small molecule inhibitor
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
A
ASP
72
A
ASP
45
HELX_P
A
ILE
74
A
ILE
47
5
1
3
A
MET
88
A
MET
61
HELX_P
A
SER
97
A
SER
70
1
2
10
A
LEU
129
A
LEU
102
HELX_P
A
GLY
137
A
GLY
110
1
3
9
A
GLN
140
A
GLN
113
HELX_P
A
CYS
161
A
CYS
134
1
4
22
A
LYS
169
A
LYS
142
HELX_P
A
GLU
171
A
GLU
144
5
5
3
A
THR
204
A
THR
177
HELX_P
A
SER
208
A
SER
181
5
6
5
A
PRO
209
A
PRO
182
HELX_P
A
HIS
216
A
HIS
189
1
7
8
A
HIS
219
A
HIS
192
HELX_P
A
GLY
238
A
GLY
211
1
8
20
A
HIS
244
A
HIS
217
HELX_P
A
GLY
251
A
GLY
224
1
9
8
A
SER
260
A
SER
233
HELX_P
A
LEU
271
A
LEU
244
1
10
12
A
ARG
274
A
ARG
247
HELX_P
A
ARG
278
A
ARG
251
5
11
5
A
THR
280
A
THR
253
HELX_P
A
HIS
287
A
HIS
260
1
12
8
A
PRO
288
A
PRO
261
HELX_P
A
GLN
291
A
GLN
264
5
13
4
A
LEU
295
A
LEU
268
HELX_P
A
LEU
304
A
LEU
277
1
14
10
metalc
2.772
A
GLN
257
A
O
GLN
230
1_555
A
CA
404
F
CA
CA
1_555
TRANSFERASE/INHIBITOR
Pim-1, leukemia cell lethality, substrate-peptide-binding residue, Fluorescent Correlation Spectroscopy, inhibitor complex, in silico screening, TRANSFERASE-INHIBITOR complex
A
GLU
124
A
GLU
97
1
A
PRO
125
A
PRO
98
-5.16
PIM1_HUMAN
UNP
1
120
P11309
KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD
WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG
SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR
WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
120
404
3UIX
29
313
P11309
A
1
2
286
1
expression tag
MET
28
3UIX
A
P11309
UNP
1
1
expression tag
SER
314
3UIX
A
P11309
UNP
287
1
expression tag
GLY
315
3UIX
A
P11309
UNP
288
1
expression tag
PRO
316
3UIX
A
P11309
UNP
289
1
expression tag
SER
317
3UIX
A
P11309
UNP
290
1
expression tag
SER
318
3UIX
A
P11309
UNP
291
1
expression tag
GLY
319
3UIX
A
P11309
UNP
292
1
expression tag
GLU
320
3UIX
A
P11309
UNP
293
1
expression tag
ASN
321
3UIX
A
P11309
UNP
294
1
expression tag
LEU
322
3UIX
A
P11309
UNP
295
1
expression tag
TYR
323
3UIX
A
P11309
UNP
296
1
expression tag
PHE
324
3UIX
A
P11309
UNP
297
1
expression tag
GLN
325
3UIX
A
P11309
UNP
298
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
11
A
GLY
47
A
GLY
20
A
GLY
50
A
GLY
23
A
ARG
57
A
ARG
30
A
PRO
63
A
PRO
36
A
GLU
70
A
GLU
43
A
SER
115
A
SER
88
A
GLU
121
A
GLU
94
A
LEU
106
A
LEU
79
A
GLU
111
A
GLU
84
A
TRP
77
A
TRP
50
A
GLY
78
A
GLY
51
A
VAL
86
A
VAL
59
A
PRO
87
A
PRO
60
A
VAL
126
A
VAL
99
A
ASP
128
A
ASP
101
A
ILE
173
A
ILE
146
A
ASP
176
A
ASP
149
A
GLU
181
A
GLU
154
A
LEU
184
A
LEU
157
A
VAL
163
A
VAL
136
A
LEU
164
A
LEU
137
A
ALA
191
A
ALA
164
A
LEU
192
A
LEU
165
BINDING SITE FOR RESIDUE Q17 A 400
A
Q17
400
Software
14
BINDING SITE FOR RESIDUE CL A 401
A
CL
401
Software
2
BINDING SITE FOR RESIDUE CL A 402
A
CL
402
Software
4
BINDING SITE FOR RESIDUE SO4 A 403
A
SO4
403
Software
9
BINDING SITE FOR RESIDUE CA A 404
A
CA
404
Software
6
BINDING SITE FOR RESIDUE GOL A 405
A
GOL
405
Software
4
A
PHE
49
A
PHE
22
14
1_555
A
VAL
52
A
VAL
25
14
1_555
A
ALA
65
A
ALA
38
14
1_555
A
LYS
67
A
LYS
40
14
1_555
A
LEU
120
A
LEU
93
14
1_555
A
GLU
121
A
GLU
94
14
1_555
A
ASP
128
A
ASP
101
14
1_555
A
GLU
171
A
GLU
144
14
1_555
A
LEU
174
A
LEU
147
14
1_555
A
ILE
185
A
ILE
158
14
1_555
A
ASP
186
A
ASP
159
14
1_555
A
HOH
422
H
HOH
14
1_555
A
HOH
425
H
HOH
14
1_555
A
HOH
512
H
HOH
14
1_555
A
ARG
205
A
ARG
178
2
1_555
A
TRP
212
A
TRP
185
2
1_555
A
HOH
15
H
HOH
4
1_555
A
GLU
70
A
GLU
43
4
1_555
A
ARG
73
A
ARG
46
4
1_555
A
THR
196
A
THR
169
4
5_555
A
ARG
156
A
ARG
129
9
3_445
A
ASN
160
A
ASN
133
9
3_445
A
ARG
258
A
ARG
231
9
1_555
A
SER
260
A
SER
233
9
1_555
A
SER
261
A
SER
234
9
1_555
A
HOH
356
H
HOH
9
1_555
A
HOH
442
H
HOH
9
1_555
A
HOH
542
H
HOH
9
1_555
A
HOH
543
H
HOH
9
1_555
A
GLU
153
A
GLU
126
6
3_445
A
ARG
156
A
ARG
129
6
3_445
A
GLN
257
A
GLN
230
6
1_555
A
ARG
258
A
ARG
231
6
1_555
A
VAL
259
A
VAL
232
6
1_555
A
GLN
264
A
GLN
237
6
1_555
A
ILE
133
A
ILE
106
4
1_555
A
ASP
170
A
ASP
143
4
1_555
A
ASP
234
A
ASP
207
4
1_555
A
GLY
238
A
GLY
211
4
1_555
170
P 65