data_3ULO # _entry.id 3ULO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ULO pdb_00003ulo 10.2210/pdb3ulo/pdb NDB NA1494 ? ? RCSB RCSB068909 ? ? WWPDB D_1000068909 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-25 2 'Structure model' 1 1 2024-03-20 3 'Structure model' 1 2 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ULO _pdbx_database_status.recvd_initial_deposition_date 2011-11-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3ULM 'The 3ULM structure is of stage (ii) in the ring crystal formation seen in oligonucleotide.' unspecified PDB 3ULN 'The 3ULN structure is of stage (iii) in the ring crystal formation seen in oligonucleotide.' unspecified PDB 3UM4 'Stage (i) Hexagonal plates' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mandal, P.K.' 1 'Venkadesh, S.' 2 'Gautham, N.' 3 # _citation.id primary _citation.title 'Ring crystals of oligonucleotides: Growth stages and X-ray diffraction studies' _citation.journal_abbrev J.Cryst.Growth _citation.journal_volume 354 _citation.page_first 20 _citation.page_last 26 _citation.year 2012 _citation.journal_id_ASTM JCRGAE _citation.country NE _citation.journal_id_ISSN 0022-0248 _citation.journal_id_CSD 0229 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1016/j.jcrysgro.2012.05.029 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mandal, P.K.' 1 ? primary 'Chandrasekaran, A.R.' 2 ? primary 'Madhanagopal, B.R.' 3 ? primary 'Venkadesh, S.' 4 ? primary 'Gautham, N.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '6-mer DNA' 1221.840 2 ? ? ? ? 2 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can TGTG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'chemically synthesized by M/s Microsynth' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n B 1 1 DT 1 5 5 DT DT B . n B 1 2 DG 2 6 6 DG DG B . n B 1 3 DT 3 7 7 DT DT B . n B 1 4 DG 4 8 8 DG DG B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 AUTOMAR 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3ULO _cell.length_a 17.670 _cell.length_b 17.670 _cell.length_c 42.729 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3ULO _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3ULO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.5760 _exptl_crystal.density_percent_sol 21.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;1mM DNA, 75mM sodium cacodylate trihydrate buffer (pH 7.0), 0.5mM cobalt hexammine chloride, 0.75mM spermine, equilibrated against 50% methyl pentane diol (MPD) , VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2009-01-07 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3ULO _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 3.22 _reflns.number_obs 237 _reflns.number_all 250 _reflns.percent_possible_obs 94.8 _reflns.pdbx_Rmerge_I_obs 0.127 _reflns.pdbx_Rsym_value 0.118 _reflns.pdbx_netI_over_sigmaI 3.4 _reflns.B_iso_Wilson_estimate 72 _reflns.pdbx_redundancy 3.51 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.22 _reflns_shell.d_res_low 3.34 _reflns_shell.percent_possible_all 97.5 _reflns_shell.Rmerge_I_obs 0.362 _reflns_shell.pdbx_Rsym_value 0.318 _reflns_shell.meanI_over_sigI_obs 1.2 _reflns_shell.pdbx_redundancy 3.28 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 37 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3ULO _refine.ls_number_reflns_obs 215 _refine.ls_number_reflns_all 226 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.41 _refine.ls_d_res_high 3.24 _refine.ls_percent_reflns_obs 95.02 _refine.ls_R_factor_obs 0.23984 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23783 _refine.ls_R_factor_R_free 0.27652 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.1 _refine.ls_number_reflns_R_free 14 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.903 _refine.B_iso_mean 53.923 _refine.aniso_B[1][1] 0.28 _refine.aniso_B[2][2] 0.28 _refine.aniso_B[3][3] -0.42 _refine.aniso_B[1][2] 0.14 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THE DNA OLIGONUCLEOTIDE HAS SIX BASE PAIRS (D(CACGCG).D(CGCGTG)) AND FORMS THE Z-TYPE DOUBLE HELICAL STRUCTURE. THE STRUCTURE HAS STATISTICAL DIS-ORDER AND THE ASYMMETRIC UNIT CONTAINS A TETRAMERIC DUPLEX WHICH COULD STAND FOR EITHER CPGPCPG/CPGPCPG OR CPAPCPG/CPGPTPG OR CPGPCPA/TPGPCPG. DUE TO DISORDER, THE TETRANUCLEOTIDE WAS CONSTRUCTED AS TPGPTPG/TPGPTPG IN WHICH THE C5 METHYL GROUP OF THYMINE WAS ASSIGNED OCCUPANCY OF 1/6 AND N2 OF GUANINE WAS ASSIGNED OCCUPANCY OF 5/6. ; _refine.pdbx_starting_model 'Z-type DNA tetranucleotide built using InsightII' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.826 _refine.overall_SU_ML 0.418 _refine.overall_SU_B 25.512 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 168 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 169 _refine_hist.d_res_high 3.24 _refine_hist.d_res_low 14.41 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 186 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.578 3.000 ? 284 'X-RAY DIFFRACTION' ? r_chiral_restr 0.085 0.200 ? 32 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 88 'X-RAY DIFFRACTION' ? r_nbd_refined 0.254 0.200 ? 92 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.301 0.200 ? 89 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.145 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.271 0.200 ? 33 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.051 0.200 ? 1 'X-RAY DIFFRACTION' ? r_scbond_it 1.149 3.000 ? 286 'X-RAY DIFFRACTION' ? r_scangle_it 1.415 4.500 ? 284 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.242 _refine_ls_shell.d_res_low 3.321 _refine_ls_shell.number_reflns_R_work 16 _refine_ls_shell.R_factor_R_work 0.508 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.694 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 2 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 16 _refine_ls_shell.redundancy_reflns_obs ? # _database_PDB_matrix.entry_id 3ULO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3ULO _struct.title 'X-ray Diffraction Studies of Ring Crystals obtained for d(CACGCG).d(CGCGTG): Stage (iv) Hexagonal rings' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ULO _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-type DNA double helix, ring crystal, crystal morphology, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3ULO _struct_ref.pdbx_db_accession 3ULO _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ULO A 1 ? 4 ? 3ULO 1 ? 4 ? 1 4 2 1 3ULO B 1 ? 4 ? 3ULO 5 ? 8 ? 5 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 450 ? 1 MORE -11 ? 1 'SSA (A^2)' 1770 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DG 4 O6 ? ? A DT 1 B DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A DT 1 O2 ? ? ? 1_555 B DG 4 N1 ? ? A DT 1 B DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DT 3 O2 ? ? A DG 2 B DT 7 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DT 3 N3 ? ? A DG 2 B DT 7 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A DT 3 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DT 3 B DG 6 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog6 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DT 1 O4 ? ? A DG 4 B DT 5 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B DT 5 ? ? "C2'" B DT 5 ? ? "C1'" B DT 5 ? ? 96.45 102.40 -5.95 0.80 N 2 1 "O4'" B DG 6 ? ? "C4'" B DG 6 ? ? "C3'" B DG 6 ? ? 101.86 104.50 -2.64 0.40 N 3 1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 110.31 108.30 2.01 0.30 N # _pdbx_entry_details.entry_id 3ULO _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE ACTUAL DNA SEQUENCE FOR THE THIS STUDY IS D(CACGCG).(CGCGTG)' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3ULO 'z-form double helix' 3ULO 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DG 4 1_555 -0.918 -0.378 0.185 11.626 14.333 1.574 1 A_DT1:DG8_B A 1 ? B 8 ? 28 1 1 A DG 2 1_555 B DT 3 1_555 0.642 -0.421 -0.138 -8.823 14.838 7.704 2 A_DG2:DT7_B A 2 ? B 7 ? 28 1 1 A DT 3 1_555 B DG 2 1_555 1.069 -0.243 1.451 -21.270 13.920 2.381 3 A_DT3:DG6_B A 3 ? B 6 ? ? 1 1 A DG 4 1_555 B DT 1 1_555 -0.752 -0.525 0.020 -5.929 7.544 12.192 4 A_DG4:DT5_B A 4 ? B 5 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DG 4 1_555 A DG 2 1_555 B DT 3 1_555 -0.503 4.753 4.036 6.127 -1.549 -4.437 -28.008 25.098 3.673 13.475 53.286 -7.720 1 AA_DT1DG2:DT7DG8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A DG 2 1_555 B DT 3 1_555 A DT 3 1_555 B DG 2 1_555 -0.611 -1.465 3.820 -10.675 -19.829 -40.521 3.671 -1.749 2.638 26.323 -14.171 -46.127 2 AA_DG2DT3:DG6DT7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DT 3 1_555 B DG 2 1_555 A DG 4 1_555 B DT 1 1_555 1.266 5.268 3.390 1.148 21.749 -24.369 -11.019 2.343 -0.957 -42.290 2.233 -32.573 3 AA_DT3DG4:DT5DG6_BB A 3 ? B 6 ? A 4 ? B 5 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name InsightII _pdbx_initial_refinement_model.details 'Z-type DNA tetranucleotide built using InsightII' # _atom_sites.entry_id 3ULO _atom_sites.fract_transf_matrix[1][1] 0.056593 _atom_sites.fract_transf_matrix[1][2] 0.032674 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.065348 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023403 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 P P . DT A 1 1 ? 1.063 -7.373 12.375 0.50 57.93 ? 1 DT A P 1 ATOM 2 O OP1 . DT A 1 1 ? 1.853 -6.569 13.368 0.50 58.07 ? 1 DT A OP1 1 ATOM 3 O OP2 . DT A 1 1 ? 1.584 -8.677 11.830 0.50 57.77 ? 1 DT A OP2 1 ATOM 4 O "O5'" . DT A 1 1 ? 0.660 -6.435 11.142 1.00 57.52 ? 1 DT A "O5'" 1 ATOM 5 C "C5'" . DT A 1 1 ? 1.681 -6.121 10.207 1.00 57.15 ? 1 DT A "C5'" 1 ATOM 6 C "C4'" . DT A 1 1 ? 1.992 -4.636 10.092 1.00 56.28 ? 1 DT A "C4'" 1 ATOM 7 O "O4'" . DT A 1 1 ? 0.922 -3.964 9.385 1.00 55.79 ? 1 DT A "O4'" 1 ATOM 8 C "C3'" . DT A 1 1 ? 2.201 -3.820 11.365 1.00 56.32 ? 1 DT A "C3'" 1 ATOM 9 O "O3'" . DT A 1 1 ? 3.075 -2.732 11.066 1.00 57.06 ? 1 DT A "O3'" 1 ATOM 10 C "C2'" . DT A 1 1 ? 0.793 -3.290 11.630 1.00 55.75 ? 1 DT A "C2'" 1 ATOM 11 C "C1'" . DT A 1 1 ? 0.415 -2.924 10.195 1.00 54.54 ? 1 DT A "C1'" 1 ATOM 12 N N1 . DT A 1 1 ? -1.034 -2.789 9.938 1.00 52.72 ? 1 DT A N1 1 ATOM 13 C C2 . DT A 1 1 ? -1.594 -1.533 10.016 1.00 52.08 ? 1 DT A C2 1 ATOM 14 O O2 . DT A 1 1 ? -0.961 -0.524 10.300 1.00 52.31 ? 1 DT A O2 1 ATOM 15 N N3 . DT A 1 1 ? -2.940 -1.508 9.754 1.00 50.89 ? 1 DT A N3 1 ATOM 16 C C4 . DT A 1 1 ? -3.749 -2.576 9.434 1.00 50.41 ? 1 DT A C4 1 ATOM 17 O O4 . DT A 1 1 ? -4.942 -2.424 9.224 1.00 50.15 ? 1 DT A O4 1 ATOM 18 C C5 . DT A 1 1 ? -3.098 -3.862 9.363 1.00 51.10 ? 1 DT A C5 1 ATOM 19 C C7 . DT A 1 1 ? -3.868 -5.105 9.020 0.17 51.14 ? 1 DT A C7 1 ATOM 20 C C6 . DT A 1 1 ? -1.784 -3.905 9.616 1.00 51.90 ? 1 DT A C6 1 ATOM 21 P P . DG A 1 2 ? 4.665 -2.846 11.177 1.00 57.88 ? 2 DG A P 1 ATOM 22 O OP1 . DG A 1 2 ? 5.005 -3.335 12.529 1.00 58.50 ? 2 DG A OP1 1 ATOM 23 O OP2 . DG A 1 2 ? 5.238 -1.551 10.745 1.00 58.52 ? 2 DG A OP2 1 ATOM 24 O "O5'" . DG A 1 2 ? 5.019 -3.992 10.116 1.00 56.76 ? 2 DG A "O5'" 1 ATOM 25 C "C5'" . DG A 1 2 ? 4.805 -3.777 8.730 1.00 55.87 ? 2 DG A "C5'" 1 ATOM 26 C "C4'" . DG A 1 2 ? 5.030 -5.058 7.952 1.00 55.40 ? 2 DG A "C4'" 1 ATOM 27 O "O4'" . DG A 1 2 ? 3.882 -5.922 8.054 1.00 54.21 ? 2 DG A "O4'" 1 ATOM 28 C "C3'" . DG A 1 2 ? 5.210 -4.835 6.468 1.00 55.51 ? 2 DG A "C3'" 1 ATOM 29 O "O3'" . DG A 1 2 ? 6.599 -4.643 6.254 1.00 56.48 ? 2 DG A "O3'" 1 ATOM 30 C "C2'" . DG A 1 2 ? 4.679 -6.117 5.820 1.00 54.25 ? 2 DG A "C2'" 1 ATOM 31 C "C1'" . DG A 1 2 ? 3.676 -6.622 6.846 1.00 53.60 ? 2 DG A "C1'" 1 ATOM 32 N N9 . DG A 1 2 ? 2.261 -6.458 6.532 1.00 53.35 ? 2 DG A N9 1 ATOM 33 C C8 . DG A 1 2 ? 1.379 -7.479 6.269 1.00 53.55 ? 2 DG A C8 1 ATOM 34 N N7 . DG A 1 2 ? 0.161 -7.078 6.042 1.00 53.30 ? 2 DG A N7 1 ATOM 35 C C5 . DG A 1 2 ? 0.236 -5.701 6.176 1.00 52.94 ? 2 DG A C5 1 ATOM 36 C C6 . DG A 1 2 ? -0.784 -4.735 6.039 1.00 53.09 ? 2 DG A C6 1 ATOM 37 O O6 . DG A 1 2 ? -1.978 -4.924 5.765 1.00 53.14 ? 2 DG A O6 1 ATOM 38 N N1 . DG A 1 2 ? -0.303 -3.442 6.254 1.00 53.29 ? 2 DG A N1 1 ATOM 39 C C2 . DG A 1 2 ? 1.001 -3.127 6.560 1.00 53.25 ? 2 DG A C2 1 ATOM 40 N N2 . DG A 1 2 ? 1.263 -1.821 6.733 0.83 53.31 ? 2 DG A N2 1 ATOM 41 N N3 . DG A 1 2 ? 1.968 -4.030 6.693 1.00 53.05 ? 2 DG A N3 1 ATOM 42 C C4 . DG A 1 2 ? 1.519 -5.296 6.486 1.00 53.01 ? 2 DG A C4 1 ATOM 43 P P . DT A 1 3 ? 7.108 -3.841 4.971 0.50 57.10 ? 3 DT A P 1 ATOM 44 O OP1 . DT A 1 3 ? 8.265 -4.619 4.461 0.50 57.05 ? 3 DT A OP1 1 ATOM 45 O OP2 . DT A 1 3 ? 7.265 -2.413 5.387 0.50 56.98 ? 3 DT A OP2 1 ATOM 46 O "O5'" . DT A 1 3 ? 5.891 -4.014 3.923 1.00 56.96 ? 3 DT A "O5'" 1 ATOM 47 C "C5'" . DT A 1 3 ? 6.081 -3.697 2.558 1.00 56.32 ? 3 DT A "C5'" 1 ATOM 48 C "C4'" . DT A 1 3 ? 5.298 -2.444 2.169 1.00 56.08 ? 3 DT A "C4'" 1 ATOM 49 O "O4'" . DT A 1 3 ? 4.026 -2.841 1.589 1.00 55.05 ? 3 DT A "O4'" 1 ATOM 50 C "C3'" . DT A 1 3 ? 4.942 -1.395 3.221 1.00 56.44 ? 3 DT A "C3'" 1 ATOM 51 O "O3'" . DT A 1 3 ? 5.026 -0.123 2.573 1.00 58.95 ? 3 DT A "O3'" 1 ATOM 52 C "C2'" . DT A 1 3 ? 3.510 -1.760 3.617 1.00 54.88 ? 3 DT A "C2'" 1 ATOM 53 C "C1'" . DT A 1 3 ? 2.964 -2.180 2.250 1.00 54.03 ? 3 DT A "C1'" 1 ATOM 54 N N1 . DT A 1 3 ? 1.838 -3.137 2.240 1.00 52.90 ? 3 DT A N1 1 ATOM 55 C C2 . DT A 1 3 ? 0.594 -2.705 1.822 1.00 52.56 ? 3 DT A C2 1 ATOM 56 O O2 . DT A 1 3 ? 0.345 -1.566 1.474 1.00 52.07 ? 3 DT A O2 1 ATOM 57 N N3 . DT A 1 3 ? -0.376 -3.673 1.833 1.00 52.50 ? 3 DT A N3 1 ATOM 58 C C4 . DT A 1 3 ? -0.227 -4.999 2.206 1.00 52.47 ? 3 DT A C4 1 ATOM 59 O O4 . DT A 1 3 ? -1.173 -5.780 2.175 1.00 52.55 ? 3 DT A O4 1 ATOM 60 C C5 . DT A 1 3 ? 1.106 -5.387 2.622 1.00 52.36 ? 3 DT A C5 1 ATOM 61 C C7 . DT A 1 3 ? 1.414 -6.793 3.042 0.17 52.34 ? 3 DT A C7 1 ATOM 62 C C6 . DT A 1 3 ? 2.060 -4.449 2.615 1.00 52.61 ? 3 DT A C6 1 ATOM 63 P P . DG A 1 4 ? 5.591 1.180 3.321 1.00 64.80 ? 4 DG A P 1 ATOM 64 O OP1 . DG A 1 4 ? 6.662 0.734 4.252 1.00 61.57 ? 4 DG A OP1 1 ATOM 65 O OP2 . DG A 1 4 ? 4.412 1.917 3.839 1.00 61.38 ? 4 DG A OP2 1 ATOM 66 O "O5'" . DG A 1 4 ? 6.283 2.086 2.182 1.00 59.86 ? 4 DG A "O5'" 1 ATOM 67 C "C5'" . DG A 1 4 ? 5.922 2.020 0.802 1.00 57.96 ? 4 DG A "C5'" 1 ATOM 68 C "C4'" . DG A 1 4 ? 7.077 1.391 0.049 1.00 56.74 ? 4 DG A "C4'" 1 ATOM 69 O "O4'" . DG A 1 4 ? 7.073 -0.018 0.352 1.00 55.79 ? 4 DG A "O4'" 1 ATOM 70 C "C3'" . DG A 1 4 ? 7.051 1.490 -1.474 1.00 56.60 ? 4 DG A "C3'" 1 ATOM 71 O "O3'" . DG A 1 4 ? 7.880 2.564 -1.912 1.00 56.75 ? 4 DG A "O3'" 1 ATOM 72 C "C2'" . DG A 1 4 ? 7.646 0.174 -1.957 1.00 55.71 ? 4 DG A "C2'" 1 ATOM 73 C "C1'" . DG A 1 4 ? 7.647 -0.721 -0.725 1.00 54.69 ? 4 DG A "C1'" 1 ATOM 74 N N9 . DG A 1 4 ? 6.861 -1.920 -0.927 1.00 53.02 ? 4 DG A N9 1 ATOM 75 C C8 . DG A 1 4 ? 7.369 -3.184 -1.074 1.00 52.68 ? 4 DG A C8 1 ATOM 76 N N7 . DG A 1 4 ? 6.452 -4.088 -1.242 1.00 52.55 ? 4 DG A N7 1 ATOM 77 C C5 . DG A 1 4 ? 5.264 -3.372 -1.207 1.00 52.42 ? 4 DG A C5 1 ATOM 78 C C6 . DG A 1 4 ? 3.933 -3.833 -1.335 1.00 52.17 ? 4 DG A C6 1 ATOM 79 O O6 . DG A 1 4 ? 3.561 -5.001 -1.512 1.00 51.16 ? 4 DG A O6 1 ATOM 80 N N1 . DG A 1 4 ? 3.001 -2.793 -1.238 1.00 52.40 ? 4 DG A N1 1 ATOM 81 C C2 . DG A 1 4 ? 3.315 -1.463 -1.050 1.00 52.45 ? 4 DG A C2 1 ATOM 82 N N2 . DG A 1 4 ? 2.274 -0.614 -0.984 0.83 51.68 ? 4 DG A N2 1 ATOM 83 N N3 . DG A 1 4 ? 4.570 -1.020 -0.922 1.00 52.73 ? 4 DG A N3 1 ATOM 84 C C4 . DG A 1 4 ? 5.491 -2.026 -1.016 1.00 52.65 ? 4 DG A C4 1 ATOM 85 P P . DT B 1 1 ? -5.515 -6.265 -0.773 0.50 52.04 ? 5 DT B P 1 ATOM 86 O OP1 . DT B 1 1 ? -4.444 -6.918 0.024 0.50 51.49 ? 5 DT B OP1 1 ATOM 87 O OP2 . DT B 1 1 ? -6.931 -6.312 -0.327 0.50 51.55 ? 5 DT B OP2 1 ATOM 88 O "O5'" . DT B 1 1 ? -5.089 -4.731 -1.084 1.00 52.94 ? 5 DT B "O5'" 1 ATOM 89 C "C5'" . DT B 1 1 ? -6.045 -3.660 -1.025 1.00 53.98 ? 5 DT B "C5'" 1 ATOM 90 C "C4'" . DT B 1 1 ? -5.352 -2.355 -0.663 1.00 54.76 ? 5 DT B "C4'" 1 ATOM 91 O "O4'" . DT B 1 1 ? -3.985 -2.615 -0.266 1.00 54.63 ? 5 DT B "O4'" 1 ATOM 92 C "C3'" . DT B 1 1 ? -5.191 -1.287 -1.730 1.00 55.23 ? 5 DT B "C3'" 1 ATOM 93 O "O3'" . DT B 1 1 ? -5.023 -0.046 -1.026 1.00 56.13 ? 5 DT B "O3'" 1 ATOM 94 C "C2'" . DT B 1 1 ? -3.882 -1.716 -2.408 1.00 54.87 ? 5 DT B "C2'" 1 ATOM 95 C "C1'" . DT B 1 1 ? -3.088 -1.934 -1.125 1.00 54.29 ? 5 DT B "C1'" 1 ATOM 96 N N1 . DT B 1 1 ? -1.872 -2.776 -1.174 1.00 53.89 ? 5 DT B N1 1 ATOM 97 C C2 . DT B 1 1 ? -0.612 -2.199 -1.207 1.00 53.72 ? 5 DT B C2 1 ATOM 98 O O2 . DT B 1 1 ? -0.378 -1.003 -1.237 1.00 54.02 ? 5 DT B O2 1 ATOM 99 N N3 . DT B 1 1 ? 0.413 -3.103 -1.224 1.00 53.26 ? 5 DT B N3 1 ATOM 100 C C4 . DT B 1 1 ? 0.313 -4.482 -1.204 1.00 53.25 ? 5 DT B C4 1 ATOM 101 O O4 . DT B 1 1 ? 1.304 -5.195 -1.229 1.00 52.71 ? 5 DT B O4 1 ATOM 102 C C5 . DT B 1 1 ? -1.028 -5.020 -1.156 1.00 53.60 ? 5 DT B C5 1 ATOM 103 C C7 . DT B 1 1 ? -1.272 -6.503 -1.130 0.17 53.53 ? 5 DT B C7 1 ATOM 104 C C6 . DT B 1 1 ? -2.041 -4.148 -1.139 1.00 53.74 ? 5 DT B C6 1 ATOM 105 P P . DG B 1 2 ? -5.282 1.361 -1.748 1.00 57.92 ? 6 DG B P 1 ATOM 106 O OP1 . DG B 1 2 ? -5.780 1.097 -3.120 1.00 58.29 ? 6 DG B OP1 1 ATOM 107 O OP2 . DG B 1 2 ? -4.059 2.194 -1.562 1.00 58.42 ? 6 DG B OP2 1 ATOM 108 O "O5'" . DG B 1 2 ? -6.497 1.992 -0.898 1.00 57.86 ? 6 DG B "O5'" 1 ATOM 109 C "C5'" . DG B 1 2 ? -6.299 2.324 0.474 1.00 57.91 ? 6 DG B "C5'" 1 ATOM 110 C "C4'" . DG B 1 2 ? -7.225 1.512 1.358 1.00 57.81 ? 6 DG B "C4'" 1 ATOM 111 O "O4'" . DG B 1 2 ? -6.861 0.115 1.332 1.00 57.90 ? 6 DG B "O4'" 1 ATOM 112 C "C3'" . DG B 1 2 ? -7.129 1.832 2.839 1.00 57.51 ? 6 DG B "C3'" 1 ATOM 113 O "O3'" . DG B 1 2 ? -7.903 2.980 3.123 1.00 56.76 ? 6 DG B "O3'" 1 ATOM 114 C "C2'" . DG B 1 2 ? -7.667 0.573 3.521 1.00 57.50 ? 6 DG B "C2'" 1 ATOM 115 C "C1'" . DG B 1 2 ? -7.552 -0.475 2.415 1.00 57.92 ? 6 DG B "C1'" 1 ATOM 116 N N9 . DG B 1 2 ? -6.890 -1.715 2.811 1.00 58.48 ? 6 DG B N9 1 ATOM 117 C C8 . DG B 1 2 ? -7.533 -2.783 3.386 1.00 59.15 ? 6 DG B C8 1 ATOM 118 N N7 . DG B 1 2 ? -6.757 -3.795 3.653 1.00 59.65 ? 6 DG B N7 1 ATOM 119 C C5 . DG B 1 2 ? -5.501 -3.382 3.217 1.00 59.49 ? 6 DG B C5 1 ATOM 120 C C6 . DG B 1 2 ? -4.256 -4.081 3.250 1.00 59.38 ? 6 DG B C6 1 ATOM 121 O O6 . DG B 1 2 ? -4.025 -5.227 3.688 1.00 58.58 ? 6 DG B O6 1 ATOM 122 N N1 . DG B 1 2 ? -3.215 -3.308 2.715 1.00 59.45 ? 6 DG B N1 1 ATOM 123 C C2 . DG B 1 2 ? -3.371 -2.025 2.219 1.00 59.60 ? 6 DG B C2 1 ATOM 124 N N2 . DG B 1 2 ? -2.260 -1.437 1.740 0.83 59.44 ? 6 DG B N2 1 ATOM 125 N N3 . DG B 1 2 ? -4.535 -1.365 2.175 1.00 59.38 ? 6 DG B N3 1 ATOM 126 C C4 . DG B 1 2 ? -5.565 -2.097 2.692 1.00 59.06 ? 6 DG B C4 1 ATOM 127 P P . DT B 1 3 ? -7.261 4.197 3.943 0.50 55.92 ? 7 DT B P 1 ATOM 128 O OP1 . DT B 1 3 ? -7.987 4.261 5.241 0.50 56.11 ? 7 DT B OP1 1 ATOM 129 O OP2 . DT B 1 3 ? -7.233 5.379 3.034 0.50 55.66 ? 7 DT B OP2 1 ATOM 130 O "O5'" . DT B 1 3 ? -5.744 3.747 4.266 1.00 55.33 ? 7 DT B "O5'" 1 ATOM 131 C "C5'" . DT B 1 3 ? -4.941 4.605 5.077 1.00 54.18 ? 7 DT B "C5'" 1 ATOM 132 C "C4'" . DT B 1 3 ? -3.937 3.875 5.955 1.00 53.05 ? 7 DT B "C4'" 1 ATOM 133 O "O4'" . DT B 1 3 ? -4.312 2.497 6.204 1.00 51.65 ? 7 DT B "O4'" 1 ATOM 134 C "C3'" . DT B 1 3 ? -2.540 3.830 5.356 1.00 53.40 ? 7 DT B "C3'" 1 ATOM 135 O "O3'" . DT B 1 3 ? -1.648 4.564 6.187 1.00 55.70 ? 7 DT B "O3'" 1 ATOM 136 C "C2'" . DT B 1 3 ? -2.199 2.341 5.285 1.00 51.97 ? 7 DT B "C2'" 1 ATOM 137 C "C1'" . DT B 1 3 ? -3.114 1.764 6.356 1.00 50.35 ? 7 DT B "C1'" 1 ATOM 138 N N1 . DT B 1 3 ? -3.392 0.288 6.281 1.00 48.67 ? 7 DT B N1 1 ATOM 139 C C2 . DT B 1 3 ? -2.375 -0.645 6.143 1.00 48.20 ? 7 DT B C2 1 ATOM 140 O O2 . DT B 1 3 ? -1.190 -0.380 6.050 1.00 48.23 ? 7 DT B O2 1 ATOM 141 N N3 . DT B 1 3 ? -2.798 -1.950 6.108 1.00 47.95 ? 7 DT B N3 1 ATOM 142 C C4 . DT B 1 3 ? -4.094 -2.422 6.197 1.00 48.12 ? 7 DT B C4 1 ATOM 143 O O4 . DT B 1 3 ? -4.348 -3.620 6.156 1.00 47.96 ? 7 DT B O4 1 ATOM 144 C C5 . DT B 1 3 ? -5.109 -1.405 6.347 1.00 48.35 ? 7 DT B C5 1 ATOM 145 C C7 . DT B 1 3 ? -6.565 -1.763 6.461 0.17 48.31 ? 7 DT B C7 1 ATOM 146 C C6 . DT B 1 3 ? -4.707 -0.127 6.387 1.00 48.78 ? 7 DT B C6 1 ATOM 147 P P . DG B 1 4 ? -0.722 5.712 5.540 1.00 57.91 ? 8 DG B P 1 ATOM 148 O OP1 . DG B 1 4 ? -1.475 6.389 4.453 1.00 58.01 ? 8 DG B OP1 1 ATOM 149 O OP2 . DG B 1 4 ? 0.624 5.132 5.264 1.00 57.63 ? 8 DG B OP2 1 ATOM 150 O "O5'" . DG B 1 4 ? -0.584 6.795 6.710 1.00 57.62 ? 8 DG B "O5'" 1 ATOM 151 C "C5'" . DG B 1 4 ? -0.772 6.395 8.056 1.00 56.73 ? 8 DG B "C5'" 1 ATOM 152 C "C4'" . DG B 1 4 ? -2.044 7.005 8.613 1.00 55.80 ? 8 DG B "C4'" 1 ATOM 153 O "O4'" . DG B 1 4 ? -3.221 6.332 8.101 1.00 55.10 ? 8 DG B "O4'" 1 ATOM 154 C "C3'" . DG B 1 4 ? -2.155 6.848 10.113 1.00 55.36 ? 8 DG B "C3'" 1 ATOM 155 O "O3'" . DG B 1 4 ? -1.409 7.890 10.717 1.00 55.59 ? 8 DG B "O3'" 1 ATOM 156 C "C2'" . DG B 1 4 ? -3.656 6.996 10.343 1.00 54.83 ? 8 DG B "C2'" 1 ATOM 157 C "C1'" . DG B 1 4 ? -4.248 6.385 9.078 1.00 54.14 ? 8 DG B "C1'" 1 ATOM 158 N N9 . DG B 1 4 ? -4.781 5.040 9.253 1.00 53.19 ? 8 DG B N9 1 ATOM 159 C C8 . DG B 1 4 ? -6.107 4.681 9.192 1.00 52.83 ? 8 DG B C8 1 ATOM 160 N N7 . DG B 1 4 ? -6.313 3.406 9.373 1.00 52.23 ? 8 DG B N7 1 ATOM 161 C C5 . DG B 1 4 ? -5.039 2.892 9.566 1.00 52.00 ? 8 DG B C5 1 ATOM 162 C C6 . DG B 1 4 ? -4.635 1.564 9.810 1.00 51.84 ? 8 DG B C6 1 ATOM 163 O O6 . DG B 1 4 ? -5.353 0.560 9.903 1.00 51.71 ? 8 DG B O6 1 ATOM 164 N N1 . DG B 1 4 ? -3.247 1.456 9.949 1.00 52.01 ? 8 DG B N1 1 ATOM 165 C C2 . DG B 1 4 ? -2.356 2.503 9.863 1.00 51.83 ? 8 DG B C2 1 ATOM 166 N N2 . DG B 1 4 ? -1.059 2.193 10.022 0.83 51.44 ? 8 DG B N2 1 ATOM 167 N N3 . DG B 1 4 ? -2.724 3.756 9.632 1.00 52.11 ? 8 DG B N3 1 ATOM 168 C C4 . DG B 1 4 ? -4.077 3.879 9.495 1.00 52.44 ? 8 DG B C4 1 HETATM 169 O O . HOH C 2 . ? -2.807 -10.076 5.838 1.00 40.40 ? 101 HOH A O 1 #