0.020708
0.000000
0.004033
0.000000
0.013712
0.000000
0.000000
0.000000
0.015224
0.000000
0.000000
0.000000
Merritt, E.A.
Larson, E.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.000
101.020
90.000
48.290
72.930
66.920
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C20 H22 N4 O
334.415
[2-amino-1-(piperidin-4-ylmethyl)-1H-benzimidazol-6-yl](phenyl)methanone
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
C
N
76
N
N
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
C
Y
81
N
N
Y
82
N
C
Y
83
N
C
Y
84
N
C
N
85
N
N
Y
86
N
N
Y
87
N
C
Y
88
N
C
Y
89
N
C
Y
90
N
C
N
91
N
C
N
92
N
O
Y
93
N
C
Y
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
C
Y
98
N
C
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
R
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
S
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
S
C
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
N
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
N
N
156
S
C
N
157
N
C
N
158
N
O
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
Y
189
N
C
Y
190
N
N
Y
191
N
C
Y
192
N
C
Y
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
S
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
N
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
S
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
O
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
R
C
N
356
N
O
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
N
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
N
406
N
O
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
N
424
N
C
N
425
N
C
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
Y
78
N
doub
Y
79
N
sing
Y
80
N
sing
Y
81
N
doub
Y
82
N
sing
N
83
N
sing
Y
84
N
sing
Y
85
N
sing
Y
86
N
doub
Y
87
N
doub
N
88
N
doub
Y
89
N
sing
N
90
N
sing
N
91
N
sing
Y
92
N
doub
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
Y
96
N
doub
Y
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
55
2803
2810
10.1021/jm201725v
22369268
Multiple Determinants for Selective Inhibition of Apicomplexan Calcium-Dependent Protein Kinase CDPK1.
2012
US
Nat.Struct.Mol.Biol.
1545-9993
17
602
607
10.1038/nsmb.1818
20436472
Toxoplasma gondii calcium-dependent protein kinase 1 is a target for selective kinase inhibitors
2010
US
ACS Med.Chem.Lett.
1948-5875
1
331
335
10.1021/ml100096t
21116453
Discovery of potent and selective inhibitors of Calcium-Dependent Protein Kinase 1 (CDPK1) from C. parvum and T. gondii
2010
10.2210/pdb3upx/pdb
pdb_00003upx
100
1
CCD
2011-05-27
MARMOSAIC 325 mm CCD
Side scattering bent cube-root I-beam single crystal; asymmetric cut 4.965 degs.
SINGLE WAVELENGTH
M
x-ray
1
0.97945
1.0
BL9-2
SSRL
0.97945
SYNCHROTRON
SSRL BEAMLINE BL9-2
55226.914
Calmodulin-domain protein kinase 1
2.7.11.17
1
man
polymer
334.415
[2-amino-1-(piperidin-4-ylmethyl)-1H-benzimidazol-6-yl](phenyl)methanone
1
syn
non-polymer
18.015
water
36
nat
water
Calmodulin-domain protein kinase, putative
no
no
GPGSMMDHLHATPGMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLL
KQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLE
SKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVE
KGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYTKEQISVDVPSLDNAILNIRQFQGTQKLAQAA
LLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIE
YSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK
LCGN
GPGSMMDHLHATPGMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLL
KQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLE
SKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVE
KGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYTKEQISVDVPSLDNAILNIRQFQGTQKLAQAA
LLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIE
YSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK
LCGN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
residues 1-29 were replaced with a cleavable His-tag plus linker during cloning; tag was cleaved prior to crystallization
sample
AAG53993, CDPK1, TGGT1_059880, TGVEG_042030
5811
Toxoplasma gondii
562
Escherichia coli
BL21(DE3)
plasmid
AVA0421
1
2.09
41.27
VAPOR DIFFUSION, SITTING DROP
7.5
24% PEG 3350, 0.275 M ammonium citrate, 5 mM DTT, 2 mM UW1300, pH 7.5, vapor diffusion, sitting drop, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2012-03-14
1
1
2012-04-18
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-11-18
REL
REL
B6A
[2-amino-1-(piperidin-4-ylmethyl)-1H-benzimidazol-6-yl](phenyl)methanone
HOH
water
B6A
1
2
B6A
B6A
1
A
HOH
2
3
HOH
HOH
2
A
HOH
3
3
HOH
HOH
3
A
HOH
4
3
HOH
HOH
4
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
7
3
HOH
HOH
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
1
3
HOH
HOH
508
A
HOH
24
3
HOH
HOH
509
A
HOH
25
3
HOH
HOH
510
A
HOH
26
3
HOH
HOH
511
A
HOH
27
3
HOH
HOH
512
A
HOH
28
3
HOH
HOH
513
A
HOH
29
3
HOH
HOH
514
A
HOH
30
3
HOH
HOH
515
A
HOH
31
3
HOH
HOH
516
A
HOH
32
3
HOH
HOH
517
A
HOH
33
3
HOH
HOH
518
A
HOH
34
3
HOH
HOH
519
A
HOH
35
3
HOH
HOH
520
A
HOH
36
3
HOH
HOH
521
A
n
1
24
A
n
2
25
A
n
3
26
A
n
4
27
A
n
5
28
A
n
6
29
A
n
7
30
A
n
8
31
A
n
9
32
A
n
10
33
A
n
11
34
A
n
12
35
A
n
13
36
A
n
14
37
A
n
15
38
A
n
16
39
A
n
17
40
A
n
18
41
A
n
19
42
A
n
20
43
A
THR
44
n
21
THR
44
A
ALA
45
n
22
ALA
45
A
ILE
46
n
23
ILE
46
A
PHE
47
n
24
PHE
47
A
SER
48
n
25
SER
48
A
ASP
49
n
26
ASP
49
A
ARG
50
n
27
ARG
50
A
TYR
51
n
28
TYR
51
A
LYS
52
n
29
LYS
52
A
GLY
53
n
30
GLY
53
A
GLN
54
n
31
GLN
54
A
ARG
55
n
32
ARG
55
A
VAL
56
n
33
VAL
56
A
LEU
57
n
34
LEU
57
A
GLY
58
n
35
GLY
58
A
LYS
59
n
36
LYS
59
A
GLY
60
n
37
GLY
60
A
SER
61
n
38
SER
61
A
PHE
62
n
39
PHE
62
A
GLY
63
n
40
GLY
63
A
GLU
64
n
41
GLU
64
A
VAL
65
n
42
VAL
65
A
ILE
66
n
43
ILE
66
A
LEU
67
n
44
LEU
67
A
CYS
68
n
45
CYS
68
A
LYS
69
n
46
LYS
69
A
ASP
70
n
47
ASP
70
A
LYS
71
n
48
LYS
71
A
ILE
72
n
49
ILE
72
A
THR
73
n
50
THR
73
A
GLY
74
n
51
GLY
74
A
GLN
75
n
52
GLN
75
A
GLU
76
n
53
GLU
76
A
CYS
77
n
54
CYS
77
A
ALA
78
n
55
ALA
78
A
VAL
79
n
56
VAL
79
A
LYS
80
n
57
LYS
80
A
VAL
81
n
58
VAL
81
A
ILE
82
n
59
ILE
82
A
SER
83
n
60
SER
83
A
LYS
84
n
61
LYS
84
A
ARG
85
n
62
ARG
85
A
GLN
86
n
63
GLN
86
A
VAL
87
n
64
VAL
87
A
LYS
88
n
65
LYS
88
A
GLN
89
n
66
GLN
89
A
LYS
90
n
67
LYS
90
A
THR
91
n
68
THR
91
A
ASP
92
n
69
ASP
92
A
LYS
93
n
70
LYS
93
A
GLU
94
n
71
GLU
94
A
SER
95
n
72
SER
95
A
LEU
96
n
73
LEU
96
A
LEU
97
n
74
LEU
97
A
ARG
98
n
75
ARG
98
A
GLU
99
n
76
GLU
99
A
VAL
100
n
77
VAL
100
A
GLN
101
n
78
GLN
101
A
LEU
102
n
79
LEU
102
A
LEU
103
n
80
LEU
103
A
LYS
104
n
81
LYS
104
A
GLN
105
n
82
GLN
105
A
LEU
106
n
83
LEU
106
A
ASP
107
n
84
ASP
107
A
HIS
108
n
85
HIS
108
A
PRO
109
n
86
PRO
109
A
ASN
110
n
87
ASN
110
A
ILE
111
n
88
ILE
111
A
MET
112
n
89
MET
112
A
LYS
113
n
90
LYS
113
A
LEU
114
n
91
LEU
114
A
TYR
115
n
92
TYR
115
A
GLU
116
n
93
GLU
116
A
PHE
117
n
94
PHE
117
A
PHE
118
n
95
PHE
118
A
GLU
119
n
96
GLU
119
A
ASP
120
n
97
ASP
120
A
LYS
121
n
98
LYS
121
A
GLY
122
n
99
GLY
122
A
TYR
123
n
100
TYR
123
A
PHE
124
n
101
PHE
124
A
TYR
125
n
102
TYR
125
A
LEU
126
n
103
LEU
126
A
VAL
127
n
104
VAL
127
A
GLY
128
n
105
GLY
128
A
GLU
129
n
106
GLU
129
A
VAL
130
n
107
VAL
130
A
TYR
131
n
108
TYR
131
A
THR
132
n
109
THR
132
A
GLY
133
n
110
GLY
133
A
GLY
134
n
111
GLY
134
A
GLU
135
n
112
GLU
135
A
LEU
136
n
113
LEU
136
A
PHE
137
n
114
PHE
137
A
ASP
138
n
115
ASP
138
A
GLU
139
n
116
GLU
139
A
ILE
140
n
117
ILE
140
A
ILE
141
n
118
ILE
141
A
SER
142
n
119
SER
142
A
ARG
143
n
120
ARG
143
A
LYS
144
n
121
LYS
144
A
ARG
145
n
122
ARG
145
A
PHE
146
n
123
PHE
146
A
SER
147
n
124
SER
147
A
GLU
148
n
125
GLU
148
A
VAL
149
n
126
VAL
149
A
ASP
150
n
127
ASP
150
A
ALA
151
n
128
ALA
151
A
ALA
152
n
129
ALA
152
A
ARG
153
n
130
ARG
153
A
ILE
154
n
131
ILE
154
A
ILE
155
n
132
ILE
155
A
ARG
156
n
133
ARG
156
A
GLN
157
n
134
GLN
157
A
VAL
158
n
135
VAL
158
A
LEU
159
n
136
LEU
159
A
SER
160
n
137
SER
160
A
GLY
161
n
138
GLY
161
A
ILE
162
n
139
ILE
162
A
THR
163
n
140
THR
163
A
TYR
164
n
141
TYR
164
A
MET
165
n
142
MET
165
A
HIS
166
n
143
HIS
166
A
LYS
167
n
144
LYS
167
A
ASN
168
n
145
ASN
168
A
LYS
169
n
146
LYS
169
A
ILE
170
n
147
ILE
170
A
VAL
171
n
148
VAL
171
A
HIS
172
n
149
HIS
172
A
ARG
173
n
150
ARG
173
A
ASP
174
n
151
ASP
174
A
LEU
175
n
152
LEU
175
A
LYS
176
n
153
LYS
176
A
PRO
177
n
154
PRO
177
A
GLU
178
n
155
GLU
178
A
ASN
179
n
156
ASN
179
A
LEU
180
n
157
LEU
180
A
LEU
181
n
158
LEU
181
A
LEU
182
n
159
LEU
182
A
GLU
183
n
160
GLU
183
A
SER
184
n
161
SER
184
A
LYS
185
n
162
LYS
185
A
SER
186
n
163
SER
186
A
LYS
187
n
164
LYS
187
A
ASP
188
n
165
ASP
188
A
ALA
189
n
166
ALA
189
A
ASN
190
n
167
ASN
190
A
ILE
191
n
168
ILE
191
A
ARG
192
n
169
ARG
192
A
ILE
193
n
170
ILE
193
A
ILE
194
n
171
ILE
194
A
ASP
195
n
172
ASP
195
A
PHE
196
n
173
PHE
196
A
GLY
197
n
174
GLY
197
A
LEU
198
n
175
LEU
198
A
SER
199
n
176
SER
199
A
THR
200
n
177
THR
200
A
HIS
201
n
178
HIS
201
A
PHE
202
n
179
PHE
202
A
GLU
203
n
180
GLU
203
A
ALA
204
n
181
ALA
204
A
SER
205
n
182
SER
205
A
LYS
206
n
183
LYS
206
A
LYS
207
n
184
LYS
207
A
MET
208
n
185
MET
208
A
LYS
209
n
186
LYS
209
A
ASP
210
n
187
ASP
210
A
LYS
211
n
188
LYS
211
A
ILE
212
n
189
ILE
212
A
GLY
213
n
190
GLY
213
A
THR
214
n
191
THR
214
A
ALA
215
n
192
ALA
215
A
TYR
216
n
193
TYR
216
A
TYR
217
n
194
TYR
217
A
ILE
218
n
195
ILE
218
A
ALA
219
n
196
ALA
219
A
PRO
220
n
197
PRO
220
A
GLU
221
n
198
GLU
221
A
VAL
222
n
199
VAL
222
A
LEU
223
n
200
LEU
223
A
HIS
224
n
201
HIS
224
A
GLY
225
n
202
GLY
225
A
THR
226
n
203
THR
226
A
TYR
227
n
204
TYR
227
A
ASP
228
n
205
ASP
228
A
GLU
229
n
206
GLU
229
A
LYS
230
n
207
LYS
230
A
CYS
231
n
208
CYS
231
A
ASP
232
n
209
ASP
232
A
VAL
233
n
210
VAL
233
A
TRP
234
n
211
TRP
234
A
SER
235
n
212
SER
235
A
THR
236
n
213
THR
236
A
GLY
237
n
214
GLY
237
A
VAL
238
n
215
VAL
238
A
ILE
239
n
216
ILE
239
A
LEU
240
n
217
LEU
240
A
TYR
241
n
218
TYR
241
A
ILE
242
n
219
ILE
242
A
LEU
243
n
220
LEU
243
A
LEU
244
n
221
LEU
244
A
SER
245
n
222
SER
245
A
GLY
246
n
223
GLY
246
A
CYS
247
n
224
CYS
247
A
PRO
248
n
225
PRO
248
A
PRO
249
n
226
PRO
249
A
PHE
250
n
227
PHE
250
A
ASN
251
n
228
ASN
251
A
GLY
252
n
229
GLY
252
A
ALA
253
n
230
ALA
253
A
ASN
254
n
231
ASN
254
A
GLU
255
n
232
GLU
255
A
TYR
256
n
233
TYR
256
A
ASP
257
n
234
ASP
257
A
ILE
258
n
235
ILE
258
A
LEU
259
n
236
LEU
259
A
LYS
260
n
237
LYS
260
A
LYS
261
n
238
LYS
261
A
VAL
262
n
239
VAL
262
A
GLU
263
n
240
GLU
263
A
LYS
264
n
241
LYS
264
A
GLY
265
n
242
GLY
265
A
LYS
266
n
243
LYS
266
A
TYR
267
n
244
TYR
267
A
THR
268
n
245
THR
268
A
PHE
269
n
246
PHE
269
A
GLU
270
n
247
GLU
270
A
LEU
271
n
248
LEU
271
A
PRO
272
n
249
PRO
272
A
GLN
273
n
250
GLN
273
A
TRP
274
n
251
TRP
274
A
LYS
275
n
252
LYS
275
A
LYS
276
n
253
LYS
276
A
VAL
277
n
254
VAL
277
A
SER
278
n
255
SER
278
A
GLU
279
n
256
GLU
279
A
SER
280
n
257
SER
280
A
ALA
281
n
258
ALA
281
A
LYS
282
n
259
LYS
282
A
ASP
283
n
260
ASP
283
A
LEU
284
n
261
LEU
284
A
ILE
285
n
262
ILE
285
A
ARG
286
n
263
ARG
286
A
LYS
287
n
264
LYS
287
A
MET
288
n
265
MET
288
A
LEU
289
n
266
LEU
289
A
THR
290
n
267
THR
290
A
TYR
291
n
268
TYR
291
A
VAL
292
n
269
VAL
292
A
PRO
293
n
270
PRO
293
A
SER
294
n
271
SER
294
A
MET
295
n
272
MET
295
A
ARG
296
n
273
ARG
296
A
ILE
297
n
274
ILE
297
A
SER
298
n
275
SER
298
A
ALA
299
n
276
ALA
299
A
ARG
300
n
277
ARG
300
A
ASP
301
n
278
ASP
301
A
ALA
302
n
279
ALA
302
A
LEU
303
n
280
LEU
303
A
ASP
304
n
281
ASP
304
A
HIS
305
n
282
HIS
305
A
GLU
306
n
283
GLU
306
A
TRP
307
n
284
TRP
307
A
ILE
308
n
285
ILE
308
A
GLN
309
n
286
GLN
309
A
THR
310
n
287
THR
310
A
TYR
311
n
288
TYR
311
A
THR
312
n
289
THR
312
A
LYS
313
n
290
LYS
313
A
n
291
314
A
n
292
315
A
n
293
316
A
n
294
317
A
n
295
318
A
n
296
319
A
VAL
320
n
297
VAL
320
A
PRO
321
n
298
PRO
321
A
SER
322
n
299
SER
322
A
LEU
323
n
300
LEU
323
A
ASP
324
n
301
ASP
324
A
ASN
325
n
302
ASN
325
A
ALA
326
n
303
ALA
326
A
ILE
327
n
304
ILE
327
A
LEU
328
n
305
LEU
328
A
ASN
329
n
306
ASN
329
A
ILE
330
n
307
ILE
330
A
ARG
331
n
308
ARG
331
A
GLN
332
n
309
GLN
332
A
PHE
333
n
310
PHE
333
A
GLN
334
n
311
GLN
334
A
GLY
335
n
312
GLY
335
A
THR
336
n
313
THR
336
A
GLN
337
n
314
GLN
337
A
LYS
338
n
315
LYS
338
A
LEU
339
n
316
LEU
339
A
ALA
340
n
317
ALA
340
A
GLN
341
n
318
GLN
341
A
ALA
342
n
319
ALA
342
A
ALA
343
n
320
ALA
343
A
LEU
344
n
321
LEU
344
A
LEU
345
n
322
LEU
345
A
TYR
346
n
323
TYR
346
A
MET
347
n
324
MET
347
A
GLY
348
n
325
GLY
348
A
SER
349
n
326
SER
349
A
LYS
350
n
327
LYS
350
A
LEU
351
n
328
LEU
351
A
THR
352
n
329
THR
352
A
SER
353
n
330
SER
353
A
GLN
354
n
331
GLN
354
A
ASP
355
n
332
ASP
355
A
GLU
356
n
333
GLU
356
A
THR
357
n
334
THR
357
A
LYS
358
n
335
LYS
358
A
GLU
359
n
336
GLU
359
A
LEU
360
n
337
LEU
360
A
THR
361
n
338
THR
361
A
ALA
362
n
339
ALA
362
A
ILE
363
n
340
ILE
363
A
PHE
364
n
341
PHE
364
A
HIS
365
n
342
HIS
365
A
LYS
366
n
343
LYS
366
A
MET
367
n
344
MET
367
A
ASP
368
n
345
ASP
368
A
LYS
369
n
346
LYS
369
A
ASN
370
n
347
ASN
370
A
GLY
371
n
348
GLY
371
A
ASP
372
n
349
ASP
372
A
GLY
373
n
350
GLY
373
A
GLN
374
n
351
GLN
374
A
LEU
375
n
352
LEU
375
A
ASP
376
n
353
ASP
376
A
ARG
377
n
354
ARG
377
A
ALA
378
n
355
ALA
378
A
GLU
379
n
356
GLU
379
A
LEU
380
n
357
LEU
380
A
ILE
381
n
358
ILE
381
A
GLU
382
n
359
GLU
382
A
GLY
383
n
360
GLY
383
A
TYR
384
n
361
TYR
384
A
LYS
385
n
362
LYS
385
A
GLU
386
n
363
GLU
386
A
LEU
387
n
364
LEU
387
A
MET
388
n
365
MET
388
A
ARG
389
n
366
ARG
389
A
n
367
390
A
n
368
391
A
n
369
392
A
n
370
393
A
ASP
394
n
371
ASP
394
A
ALA
395
n
372
ALA
395
A
SER
396
n
373
SER
396
A
MET
397
n
374
MET
397
A
LEU
398
n
375
LEU
398
A
ASP
399
n
376
ASP
399
A
ALA
400
n
377
ALA
400
A
SER
401
n
378
SER
401
A
ALA
402
n
379
ALA
402
A
VAL
403
n
380
VAL
403
A
GLU
404
n
381
GLU
404
A
HIS
405
n
382
HIS
405
A
GLU
406
n
383
GLU
406
A
VAL
407
n
384
VAL
407
A
ASP
408
n
385
ASP
408
A
GLN
409
n
386
GLN
409
A
VAL
410
n
387
VAL
410
A
LEU
411
n
388
LEU
411
A
ASP
412
n
389
ASP
412
A
n
390
413
A
n
391
414
A
n
392
415
A
n
393
416
A
n
394
417
A
n
395
418
A
n
396
419
A
n
397
420
A
n
398
421
A
ILE
422
n
399
ILE
422
A
GLU
423
n
400
GLU
423
A
TYR
424
n
401
TYR
424
A
SER
425
n
402
SER
425
A
GLU
426
n
403
GLU
426
A
PHE
427
n
404
PHE
427
A
VAL
428
n
405
VAL
428
A
THR
429
n
406
THR
429
A
VAL
430
n
407
VAL
430
A
ALA
431
n
408
ALA
431
A
MET
432
n
409
MET
432
A
ASP
433
n
410
ASP
433
A
ARG
434
n
411
ARG
434
A
LYS
435
n
412
LYS
435
A
THR
436
n
413
THR
436
A
LEU
437
n
414
LEU
437
A
LEU
438
n
415
LEU
438
A
SER
439
n
416
SER
439
A
ARG
440
n
417
ARG
440
A
GLU
441
n
418
GLU
441
A
ARG
442
n
419
ARG
442
A
LEU
443
n
420
LEU
443
A
GLU
444
n
421
GLU
444
A
ARG
445
n
422
ARG
445
A
ALA
446
n
423
ALA
446
A
PHE
447
n
424
PHE
447
A
ARG
448
n
425
ARG
448
A
MET
449
n
426
MET
449
A
PHE
450
n
427
PHE
450
A
ASP
451
n
428
ASP
451
A
SER
452
n
429
SER
452
A
ASP
453
n
430
ASP
453
A
ASN
454
n
431
ASN
454
A
SER
455
n
432
SER
455
A
GLY
456
n
433
GLY
456
A
LYS
457
n
434
LYS
457
A
ILE
458
n
435
ILE
458
A
SER
459
n
436
SER
459
A
SER
460
n
437
SER
460
A
THR
461
n
438
THR
461
A
GLU
462
n
439
GLU
462
A
LEU
463
n
440
LEU
463
A
ALA
464
n
441
ALA
464
A
THR
465
n
442
THR
465
A
ILE
466
n
443
ILE
466
A
PHE
467
n
444
PHE
467
A
GLY
468
n
445
GLY
468
A
VAL
469
n
446
VAL
469
A
SER
470
n
447
SER
470
A
ASP
471
n
448
ASP
471
A
VAL
472
n
449
VAL
472
A
ASP
473
n
450
ASP
473
A
SER
474
n
451
SER
474
A
GLU
475
n
452
GLU
475
A
THR
476
n
453
THR
476
A
TRP
477
n
454
TRP
477
A
LYS
478
n
455
LYS
478
A
SER
479
n
456
SER
479
A
VAL
480
n
457
VAL
480
A
LEU
481
n
458
LEU
481
A
SER
482
n
459
SER
482
A
GLU
483
n
460
GLU
483
A
VAL
484
n
461
VAL
484
A
ASP
485
n
462
ASP
485
A
LYS
486
n
463
LYS
486
A
ASN
487
n
464
ASN
487
A
ASN
488
n
465
ASN
488
A
ASP
489
n
466
ASP
489
A
GLY
490
n
467
GLY
490
A
GLU
491
n
468
GLU
491
A
VAL
492
n
469
VAL
492
A
ASP
493
n
470
ASP
493
A
PHE
494
n
471
PHE
494
A
ASP
495
n
472
ASP
495
A
GLU
496
n
473
GLU
496
A
PHE
497
n
474
PHE
497
A
GLN
498
n
475
GLN
498
A
GLN
499
n
476
GLN
499
A
MET
500
n
477
MET
500
A
LEU
501
n
478
LEU
501
A
LEU
502
n
479
LEU
502
A
LYS
503
n
480
LYS
503
A
LEU
504
n
481
LEU
504
A
CYS
505
n
482
CYS
505
A
GLY
506
n
483
GLY
506
A
ASN
507
n
484
ASN
507
A
4.7642
-1.3328
1.0336
5.0992
-1.8790
4.1015
-0.1123
-0.0633
0.1904
0.3779
0.0266
-0.1122
-0.3416
0.0739
0.0857
0.2126
-0.0326
-0.0520
0.0506
-0.0413
0.0694
refined
19.8100
14.7550
40.2710
X-RAY DIFFRACTION
1.9331
-0.0024
0.2881
1.6368
-0.9523
3.7805
-0.0036
-0.0141
-0.0593
-0.0379
-0.0516
-0.1971
0.0332
0.2084
0.0552
0.0473
0.0104
-0.0018
0.0156
-0.0057
0.1286
refined
19.4490
13.0230
24.9480
X-RAY DIFFRACTION
3.7042
0.3941
-0.0528
2.6481
-0.0248
2.1645
-0.0530
0.3673
-0.0245
-0.3761
-0.0394
-0.1142
0.1836
0.1440
0.0925
0.0775
0.0296
0.0182
0.0903
-0.0019
0.0124
refined
17.5830
20.6540
8.4080
X-RAY DIFFRACTION
0.2263
-0.6669
-2.6864
4.1840
10.8555
35.8797
0.0616
0.0653
-0.0240
0.4897
-0.1238
-0.1062
0.1656
-0.8084
0.0622
0.2487
0.0493
-0.0649
0.2062
0.0368
0.1890
refined
33.7020
33.4980
36.0730
X-RAY DIFFRACTION
3.8796
-1.2382
-1.7437
10.0105
0.8538
2.0562
0.0068
0.2156
-0.1837
0.3129
-0.0175
-0.1627
0.1968
-0.1544
0.0107
0.5486
0.0342
-0.1775
0.3281
0.0087
0.3718
refined
36.9900
27.4830
53.3770
X-RAY DIFFRACTION
9.7832
-3.2385
-2.9604
4.2258
2.6822
6.9592
0.1078
0.0098
0.4888
0.0788
0.1422
-0.1354
-0.4108
0.0655
-0.2501
0.0479
-0.0032
-0.0045
0.0284
0.0476
0.1246
refined
40.2310
36.5360
21.8810
X-RAY DIFFRACTION
A
44
A
99
X-RAY DIFFRACTION
1
A
100
A
214
X-RAY DIFFRACTION
2
A
215
A
335
X-RAY DIFFRACTION
3
A
336
A
363
X-RAY DIFFRACTION
4
A
364
A
436
X-RAY DIFFRACTION
5
A
437
A
507
X-RAY DIFFRACTION
6
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
54
A
N
GLN
31
A
O
LEU
67
A
O
LEU
44
A
N
ILE
66
A
N
ILE
43
A
O
VAL
79
A
O
VAL
56
A
N
ALA
78
A
N
ALA
55
A
O
GLY
128
A
O
GLY
105
A
O
TYR
125
A
O
TYR
102
A
N
PHE
118
A
N
PHE
95
A
N
LEU
181
A
N
LEU
158
A
O
ARG
192
A
O
ARG
169
A
N
ILE
458
A
N
ILE
435
A
O
VAL
492
A
O
VAL
469
1
A
CG
GLU
64
A
CG
GLU
41
1
Y
1
A
CD
GLU
64
A
CD
GLU
41
1
Y
1
A
OE1
GLU
64
A
OE1
GLU
41
1
Y
1
A
OE2
GLU
64
A
OE2
GLU
41
1
Y
1
A
CG
ARG
85
A
CG
ARG
62
1
Y
1
A
CD
ARG
85
A
CD
ARG
62
1
Y
1
A
NE
ARG
85
A
NE
ARG
62
1
Y
1
A
CZ
ARG
85
A
CZ
ARG
62
1
Y
1
A
NH1
ARG
85
A
NH1
ARG
62
1
Y
1
A
NH2
ARG
85
A
NH2
ARG
62
1
Y
1
A
CG
LYS
88
A
CG
LYS
65
1
Y
1
A
CD
LYS
88
A
CD
LYS
65
1
Y
1
A
CE
LYS
88
A
CE
LYS
65
1
Y
1
A
NZ
LYS
88
A
NZ
LYS
65
1
Y
1
A
CG
LYS
93
A
CG
LYS
70
1
Y
1
A
CD
LYS
93
A
CD
LYS
70
1
Y
1
A
CE
LYS
93
A
CE
LYS
70
1
Y
1
A
NZ
LYS
93
A
NZ
LYS
70
1
Y
1
A
CG
LYS
121
A
CG
LYS
98
1
Y
1
A
CD
LYS
121
A
CD
LYS
98
1
Y
1
A
CE
LYS
121
A
CE
LYS
98
1
Y
1
A
NZ
LYS
121
A
NZ
LYS
98
1
Y
1
A
CG
LYS
144
A
CG
LYS
121
1
Y
1
A
CD
LYS
144
A
CD
LYS
121
1
Y
1
A
CE
LYS
144
A
CE
LYS
121
1
Y
1
A
NZ
LYS
144
A
NZ
LYS
121
1
Y
1
A
CG
LYS
187
A
CG
LYS
164
1
Y
1
A
CD
LYS
187
A
CD
LYS
164
1
Y
1
A
CE
LYS
187
A
CE
LYS
164
1
Y
1
A
NZ
LYS
187
A
NZ
LYS
164
1
Y
1
A
CG
ASP
188
A
CG
ASP
165
1
Y
1
A
OD1
ASP
188
A
OD1
ASP
165
1
Y
1
A
OD2
ASP
188
A
OD2
ASP
165
1
Y
1
A
CE
LYS
266
A
CE
LYS
243
1
Y
1
A
NZ
LYS
266
A
NZ
LYS
243
1
Y
1
A
CG
GLU
270
A
CG
GLU
247
1
Y
1
A
CD
GLU
270
A
CD
GLU
247
1
Y
1
A
OE1
GLU
270
A
OE1
GLU
247
1
Y
1
A
OE2
GLU
270
A
OE2
GLU
247
1
Y
1
A
CG
LYS
275
A
CG
LYS
252
1
Y
1
A
CD
LYS
275
A
CD
LYS
252
1
Y
1
A
CE
LYS
275
A
CE
LYS
252
1
Y
1
A
NZ
LYS
275
A
NZ
LYS
252
1
Y
1
A
CG
LYS
369
A
CG
LYS
346
1
Y
1
A
CD
LYS
369
A
CD
LYS
346
1
Y
1
A
CE
LYS
369
A
CE
LYS
346
1
Y
1
A
NZ
LYS
369
A
NZ
LYS
346
1
Y
1
A
CG1
ILE
422
A
CG1
ILE
399
1
Y
1
A
CG2
ILE
422
A
CG2
ILE
399
1
Y
1
A
CD1
ILE
422
A
CD1
ILE
399
1
Y
1
A
CG
GLU
423
A
CG
GLU
400
1
Y
1
A
CD
GLU
423
A
CD
GLU
400
1
Y
1
A
OE1
GLU
423
A
OE1
GLU
400
1
Y
1
A
OE2
GLU
423
A
OE2
GLU
400
1
Y
1
A
CG
LYS
486
A
CG
LYS
463
1
Y
1
A
CD
LYS
486
A
CD
LYS
463
1
Y
1
A
CE
LYS
486
A
CE
LYS
463
1
Y
1
A
NZ
LYS
486
A
NZ
LYS
463
1
Y
1
A
GLY
24
A
GLY
1
1
Y
1
A
PRO
25
A
PRO
2
1
Y
1
A
GLY
26
A
GLY
3
1
Y
1
A
SER
27
A
SER
4
1
Y
1
A
MET
28
A
MET
5
1
Y
1
A
MET
29
A
MET
6
1
Y
1
A
ASP
30
A
ASP
7
1
Y
1
A
HIS
31
A
HIS
8
1
Y
1
A
LEU
32
A
LEU
9
1
Y
1
A
HIS
33
A
HIS
10
1
Y
1
A
ALA
34
A
ALA
11
1
Y
1
A
THR
35
A
THR
12
1
Y
1
A
PRO
36
A
PRO
13
1
Y
1
A
GLY
37
A
GLY
14
1
Y
1
A
MET
38
A
MET
15
1
Y
1
A
PHE
39
A
PHE
16
1
Y
1
A
VAL
40
A
VAL
17
1
Y
1
A
GLN
41
A
GLN
18
1
Y
1
A
HIS
42
A
HIS
19
1
Y
1
A
SER
43
A
SER
20
1
Y
1
A
GLU
314
A
GLU
291
1
Y
1
A
GLN
315
A
GLN
292
1
Y
1
A
ILE
316
A
ILE
293
1
Y
1
A
SER
317
A
SER
294
1
Y
1
A
VAL
318
A
VAL
295
1
Y
1
A
ASP
319
A
ASP
296
1
Y
1
A
MET
390
A
MET
367
1
Y
1
A
LYS
391
A
LYS
368
1
Y
1
A
GLY
392
A
GLY
369
1
Y
1
A
GLN
393
A
GLN
370
1
Y
1
A
ALA
413
A
ALA
390
1
Y
1
A
VAL
414
A
VAL
391
1
Y
1
A
ASP
415
A
ASP
392
1
Y
1
A
PHE
416
A
PHE
393
1
Y
1
A
ASP
417
A
ASP
394
1
Y
1
A
LYS
418
A
LYS
395
1
Y
1
A
ASN
419
A
ASN
396
1
Y
1
A
GLY
420
A
GLY
397
1
Y
1
A
TYR
421
A
TYR
398
1
Y
1
A
PHE
62
75.59
-15.80
1
A
ASP
107
-160.73
116.11
1
A
SER
142
-100.84
54.00
1
A
LYS
169
70.47
30.96
1
A
ARG
173
75.76
-35.59
1
A
LYS
187
-71.08
-72.22
1
A
ASP
433
-39.59
-36.08
1
A
ASP
473
-39.57
136.34
1
A
ASN
488
71.15
-61.84
119.800
52.0670
21.720
-1.6800
0.0000
-1.1900
-0.1400
0.0000
1.3700
0.9500
0.9130
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES: WITH TLS ADDED
0.2639
0.2043
0.2075
2.2700
36.7100
1073
20868
5.1000
98.5800
0.2777
0.2117
1.000
0.400
0.8123
18.0880
0.2120
0.3854
0.2609
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.2610
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.2700
36.7100
36
3581
25
0
3520
0.007
0.020
3614
0.001
0.020
2468
1.093
1.975
4870
0.816
3.001
6003
5.170
5.000
445
36.471
24.699
166
14.529
15.000
668
16.128
15.000
20
0.058
0.200
545
0.004
0.020
3985
0.001
0.020
718
0.3560
0.2920
2.3300
64
1398
1462
20
97.4700
2.271
39.743
3UPX
20869
20869
0.089
1
6.900
4.100
98.600
0.615
2.270
2.390
1.200
12358
3003
0.615
1
4.100
98.100
0.404
2.390
2.540
1.900
12014
2875
0.404
1
4.200
98.200
0.312
2.540
2.710
1.900
11131
2669
0.312
1
4.200
98.400
0.173
2.710
2.930
4.400
10502
2511
0.173
1
4.200
98.600
0.108
2.930
3.210
6.800
9777
2346
0.108
1
4.200
98.800
0.081
3.210
3.590
7.600
8656
2085
0.081
1
4.200
99.000
0.072
3.590
4.150
5.600
7784
1876
0.072
1
4.100
98.900
0.043
4.150
5.080
14.600
6518
1575
0.043
1
4.100
99.100
0.043
5.080
7.180
13.800
5079
1235
0.043
1
4.100
98.900
0.043
7.180
39.743
10.500
2764
694
0.043
1
4.000
98.700
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2010/01/06
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.16
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data reduction
MOSFLM
Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with inhibitor UW1300
1
N
N
2
N
N
3
N
N
A
ILE
46
A
ILE
23
HELX_P
A
ARG
50
A
ARG
27
1
1
5
A
ASP
92
A
ASP
69
HELX_P
A
LEU
106
A
LEU
83
1
2
15
A
GLU
135
A
GLU
112
HELX_P
A
ILE
141
A
ILE
118
1
3
7
A
SER
147
A
SER
124
HELX_P
A
ASN
168
A
ASN
145
1
4
22
A
LYS
176
A
LYS
153
HELX_P
A
GLU
178
A
GLU
155
5
5
3
A
LYS
207
A
LYS
184
HELX_P
A
LYS
211
A
LYS
188
5
6
5
A
ALA
219
A
ALA
196
HELX_P
A
GLY
225
A
GLY
202
1
7
7
A
GLU
229
A
GLU
206
HELX_P
A
GLY
246
A
GLY
223
1
8
18
A
ASN
254
A
ASN
231
HELX_P
A
GLY
265
A
GLY
242
1
9
12
A
LEU
271
A
LEU
248
HELX_P
A
VAL
277
A
VAL
254
5
10
7
A
SER
278
A
SER
255
HELX_P
A
LEU
289
A
LEU
266
1
11
12
A
SER
298
A
SER
275
HELX_P
A
ASP
304
A
ASP
281
1
12
7
A
HIS
305
A
HIS
282
HELX_P
A
LYS
313
A
LYS
290
1
13
9
A
LEU
323
A
LEU
300
HELX_P
A
ASP
368
A
ASP
345
1
14
46
A
ASP
376
A
ASP
353
HELX_P
A
MET
388
A
MET
365
1
15
13
A
ASP
399
A
ASP
376
HELX_P
A
ASP
412
A
ASP
389
1
16
14
A
GLU
423
A
GLU
400
HELX_P
A
ASP
451
A
ASP
428
1
17
29
A
SER
460
A
SER
437
HELX_P
A
SER
470
A
SER
447
1
18
11
A
ASP
473
A
ASP
450
HELX_P
A
ASP
485
A
ASP
462
1
19
13
A
ASP
493
A
ASP
470
HELX_P
A
LEU
504
A
LEU
481
1
20
12
TRANSFERASE/TRANSFERASE INHIBITOR
serine/threonine protein kinase, transferase, calcium-binding, ATP-binding, TRANSFERASE-TRANSFERASE INHIBITOR complex
Q9BJF5_TOXGO
UNP
1
30
Q9BJF5
DHLHATPGMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHP
NIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDA
NIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTF
ELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYTKEQISVDVPSLDNAILNIRQFQGTQKLAQAALLYMGS
KLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVT
VAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKLCGN
30
507
3UPX
30
507
Q9BJF5
A
1
7
484
1
expression tag
GLY
24
3UPX
A
Q9BJF5
UNP
1
1
expression tag
PRO
25
3UPX
A
Q9BJF5
UNP
2
1
expression tag
GLY
26
3UPX
A
Q9BJF5
UNP
3
1
expression tag
SER
27
3UPX
A
Q9BJF5
UNP
4
1
expression tag
MET
28
3UPX
A
Q9BJF5
UNP
5
1
expression tag
MET
29
3UPX
A
Q9BJF5
UNP
6
5
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
51
A
TYR
28
A
GLY
60
A
GLY
37
A
GLY
63
A
GLY
40
A
ASP
70
A
ASP
47
A
GLU
76
A
GLU
53
A
SER
83
A
SER
60
A
TYR
123
A
TYR
100
A
GLY
128
A
GLY
105
A
LEU
114
A
LEU
91
A
GLU
119
A
GLU
96
A
LEU
180
A
LEU
157
A
LEU
182
A
LEU
159
A
ILE
191
A
ILE
168
A
ILE
193
A
ILE
170
A
ILE
458
A
ILE
435
A
SER
459
A
SER
436
A
GLU
491
A
GLU
468
A
VAL
492
A
VAL
469
BINDING SITE FOR RESIDUE B6A A 1
A
B6A
1
Software
12
A
LEU
57
A
LEU
34
12
1_555
A
VAL
65
A
VAL
42
12
1_555
A
ALA
78
A
ALA
55
12
1_555
A
LYS
80
A
LYS
57
12
1_555
A
MET
112
A
MET
89
12
1_555
A
LEU
126
A
LEU
103
12
1_555
A
GLU
129
A
GLU
106
12
1_555
A
TYR
131
A
TYR
108
12
1_555
A
GLU
135
A
GLU
112
12
1_555
A
LEU
181
A
LEU
158
12
1_555
A
ILE
194
A
ILE
171
12
1_555
A
ASP
195
A
ASP
172
12
1_555
4
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