0.022084
0.000000
0.000000
0.000000
0.009703
0.000000
0.000000
0.000000
0.007759
0.00000
0.00000
0.00000
Cao, Z.
Bowie, J.U.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
45.281
103.059
128.879
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C14 H28 O6
292.369
n
octyl beta-D-glucopyranoside
D-saccharide
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C36 H72 N O8 P
677.933
1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
non-polymer
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C20 H28 O
284.436
RETINAL
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
109
8121
8126
10.1073/pnas.1201298109
22566663
Shifting hydrogen bonds may produce flexible transmembrane helices.
2012
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-11-13
ADSC QUANTUM 315
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97916
1.0
24-ID-C
APS
0.97916
SYNCHROTRON
APS BEAMLINE 24-ID-C
26887.463
Bacteriorhodopsin
P50A, Y57F
1
man
polymer
284.436
RETINAL
1
syn
non-polymer
292.369
octyl beta-D-glucopyranoside
1
man
non-polymer
677.933
1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
1
syn
non-polymer
18.015
water
9
nat
water
BR, Bacterioopsin, BO
no
no
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVAAIAFTMFLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGEAEAPEPSA
GDGAAATSD
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVAAIAFTMFLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGEAEAPEPSA
GDGAAATSD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 700922 / JCM 11081 / NRC-1
sample
bop, VNG_1467G
64091
Halobacterium sp.
2242
Halobacterium salinarum
L33
1
2.80
56.01
BICELLES, VAPOR DIFFUSION, HANGING DROP
4
0.65M sodium phosphate, 0.95% triethylene glycerol, 0.008M 1,6-hexanediol, 4.3% DMPC, 1.5% CHAPSO , BICELLES, VAPOR DIFFUSION, HANGING DROP, temperature 310K
310
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Data collection
Database references
Derived calculations
Structure summary
1
0
2012-05-09
1
1
2014-07-16
1
2
2020-07-29
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
b-octylglucoside
RCSB
Y
RCSB
2011-11-27
REL
REL
RET
RETINAL
BOG
octyl beta-D-glucopyranoside
MC3
1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
HOH
water
RET
301
2
RET
RET
301
A
BOG
401
3
BOG
BOG
302
A
MC3
402
4
MC3
MC3
303
A
HOH
501
5
HOH
HOH
501
A
HOH
502
5
HOH
HOH
502
A
HOH
503
5
HOH
HOH
503
A
HOH
504
5
HOH
HOH
504
A
HOH
505
5
HOH
HOH
505
A
HOH
506
5
HOH
HOH
506
A
HOH
507
5
HOH
HOH
507
A
HOH
508
5
HOH
HOH
508
A
HOH
509
5
HOH
HOH
509
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
THR
5
n
5
THR
5
A
GLY
6
n
6
GLY
6
A
ARG
7
n
7
ARG
7
A
PRO
8
n
8
PRO
8
A
GLU
9
n
9
GLU
9
A
TRP
10
n
10
TRP
10
A
ILE
11
n
11
ILE
11
A
TRP
12
n
12
TRP
12
A
LEU
13
n
13
LEU
13
A
ALA
14
n
14
ALA
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
THR
17
n
17
THR
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
MET
20
n
20
MET
20
A
GLY
21
n
21
GLY
21
A
LEU
22
n
22
LEU
22
A
GLY
23
n
23
GLY
23
A
THR
24
n
24
THR
24
A
LEU
25
n
25
LEU
25
A
TYR
26
n
26
TYR
26
A
PHE
27
n
27
PHE
27
A
LEU
28
n
28
LEU
28
A
VAL
29
n
29
VAL
29
A
LYS
30
n
30
LYS
30
A
GLY
31
n
31
GLY
31
A
MET
32
n
32
MET
32
A
GLY
33
n
33
GLY
33
A
VAL
34
n
34
VAL
34
A
SER
35
n
35
SER
35
A
ASP
36
n
36
ASP
36
A
PRO
37
n
37
PRO
37
A
ASP
38
n
38
ASP
38
A
ALA
39
n
39
ALA
39
A
LYS
40
n
40
LYS
40
A
LYS
41
n
41
LYS
41
A
PHE
42
n
42
PHE
42
A
TYR
43
n
43
TYR
43
A
ALA
44
n
44
ALA
44
A
ILE
45
n
45
ILE
45
A
THR
46
n
46
THR
46
A
THR
47
n
47
THR
47
A
LEU
48
n
48
LEU
48
A
VAL
49
n
49
VAL
49
A
ALA
50
n
50
ALA
50
A
ALA
51
n
51
ALA
51
A
ILE
52
n
52
ILE
52
A
ALA
53
n
53
ALA
53
A
PHE
54
n
54
PHE
54
A
THR
55
n
55
THR
55
A
MET
56
n
56
MET
56
A
PHE
57
n
57
PHE
57
A
LEU
58
n
58
LEU
58
A
SER
59
n
59
SER
59
A
MET
60
n
60
MET
60
A
LEU
61
n
61
LEU
61
A
LEU
62
n
62
LEU
62
A
GLY
63
n
63
GLY
63
A
TYR
64
n
64
TYR
64
A
GLY
65
n
65
GLY
65
A
LEU
66
n
66
LEU
66
A
THR
67
n
67
THR
67
A
MET
68
n
68
MET
68
A
VAL
69
n
69
VAL
69
A
PRO
70
n
70
PRO
70
A
PHE
71
n
71
PHE
71
A
GLY
72
n
72
GLY
72
A
GLY
73
n
73
GLY
73
A
GLU
74
n
74
GLU
74
A
GLN
75
n
75
GLN
75
A
ASN
76
n
76
ASN
76
A
PRO
77
n
77
PRO
77
A
ILE
78
n
78
ILE
78
A
TYR
79
n
79
TYR
79
A
TRP
80
n
80
TRP
80
A
ALA
81
n
81
ALA
81
A
ARG
82
n
82
ARG
82
A
TYR
83
n
83
TYR
83
A
ALA
84
n
84
ALA
84
A
ASP
85
n
85
ASP
85
A
TRP
86
n
86
TRP
86
A
LEU
87
n
87
LEU
87
A
PHE
88
n
88
PHE
88
A
THR
89
n
89
THR
89
A
THR
90
n
90
THR
90
A
PRO
91
n
91
PRO
91
A
LEU
92
n
92
LEU
92
A
LEU
93
n
93
LEU
93
A
LEU
94
n
94
LEU
94
A
LEU
95
n
95
LEU
95
A
ASP
96
n
96
ASP
96
A
LEU
97
n
97
LEU
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
LEU
100
n
100
LEU
100
A
VAL
101
n
101
VAL
101
A
ASP
102
n
102
ASP
102
A
ALA
103
n
103
ALA
103
A
ASP
104
n
104
ASP
104
A
GLN
105
n
105
GLN
105
A
GLY
106
n
106
GLY
106
A
THR
107
n
107
THR
107
A
ILE
108
n
108
ILE
108
A
LEU
109
n
109
LEU
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
VAL
112
n
112
VAL
112
A
GLY
113
n
113
GLY
113
A
ALA
114
n
114
ALA
114
A
ASP
115
n
115
ASP
115
A
GLY
116
n
116
GLY
116
A
ILE
117
n
117
ILE
117
A
MET
118
n
118
MET
118
A
ILE
119
n
119
ILE
119
A
GLY
120
n
120
GLY
120
A
THR
121
n
121
THR
121
A
GLY
122
n
122
GLY
122
A
LEU
123
n
123
LEU
123
A
VAL
124
n
124
VAL
124
A
GLY
125
n
125
GLY
125
A
ALA
126
n
126
ALA
126
A
LEU
127
n
127
LEU
127
A
THR
128
n
128
THR
128
A
LYS
129
n
129
LYS
129
A
VAL
130
n
130
VAL
130
A
TYR
131
n
131
TYR
131
A
SER
132
n
132
SER
132
A
TYR
133
n
133
TYR
133
A
ARG
134
n
134
ARG
134
A
PHE
135
n
135
PHE
135
A
VAL
136
n
136
VAL
136
A
TRP
137
n
137
TRP
137
A
TRP
138
n
138
TRP
138
A
ALA
139
n
139
ALA
139
A
ILE
140
n
140
ILE
140
A
SER
141
n
141
SER
141
A
THR
142
n
142
THR
142
A
ALA
143
n
143
ALA
143
A
ALA
144
n
144
ALA
144
A
MET
145
n
145
MET
145
A
LEU
146
n
146
LEU
146
A
TYR
147
n
147
TYR
147
A
ILE
148
n
148
ILE
148
A
LEU
149
n
149
LEU
149
A
TYR
150
n
150
TYR
150
A
VAL
151
n
151
VAL
151
A
LEU
152
n
152
LEU
152
A
PHE
153
n
153
PHE
153
A
PHE
154
n
154
PHE
154
A
GLY
155
n
155
GLY
155
A
PHE
156
n
156
PHE
156
A
THR
157
n
157
THR
157
A
SER
158
n
158
SER
158
A
LYS
159
n
159
LYS
159
A
ALA
160
n
160
ALA
160
A
GLU
161
n
161
GLU
161
A
SER
162
n
162
SER
162
A
MET
163
n
163
MET
163
A
ARG
164
n
164
ARG
164
A
PRO
165
n
165
PRO
165
A
GLU
166
n
166
GLU
166
A
VAL
167
n
167
VAL
167
A
ALA
168
n
168
ALA
168
A
SER
169
n
169
SER
169
A
THR
170
n
170
THR
170
A
PHE
171
n
171
PHE
171
A
LYS
172
n
172
LYS
172
A
VAL
173
n
173
VAL
173
A
LEU
174
n
174
LEU
174
A
ARG
175
n
175
ARG
175
A
ASN
176
n
176
ASN
176
A
VAL
177
n
177
VAL
177
A
THR
178
n
178
THR
178
A
VAL
179
n
179
VAL
179
A
VAL
180
n
180
VAL
180
A
LEU
181
n
181
LEU
181
A
TRP
182
n
182
TRP
182
A
SER
183
n
183
SER
183
A
ALA
184
n
184
ALA
184
A
TYR
185
n
185
TYR
185
A
PRO
186
n
186
PRO
186
A
VAL
187
n
187
VAL
187
A
VAL
188
n
188
VAL
188
A
TRP
189
n
189
TRP
189
A
LEU
190
n
190
LEU
190
A
ILE
191
n
191
ILE
191
A
GLY
192
n
192
GLY
192
A
SER
193
n
193
SER
193
A
GLU
194
n
194
GLU
194
A
GLY
195
n
195
GLY
195
A
ALA
196
n
196
ALA
196
A
GLY
197
n
197
GLY
197
A
ILE
198
n
198
ILE
198
A
VAL
199
n
199
VAL
199
A
PRO
200
n
200
PRO
200
A
LEU
201
n
201
LEU
201
A
ASN
202
n
202
ASN
202
A
ILE
203
n
203
ILE
203
A
GLU
204
n
204
GLU
204
A
THR
205
n
205
THR
205
A
LEU
206
n
206
LEU
206
A
LEU
207
n
207
LEU
207
A
PHE
208
n
208
PHE
208
A
MET
209
n
209
MET
209
A
VAL
210
n
210
VAL
210
A
LEU
211
n
211
LEU
211
A
ASP
212
n
212
ASP
212
A
VAL
213
n
213
VAL
213
A
SER
214
n
214
SER
214
A
ALA
215
n
215
ALA
215
A
LYS
216
n
216
LYS
216
A
VAL
217
n
217
VAL
217
A
GLY
218
n
218
GLY
218
A
PHE
219
n
219
PHE
219
A
GLY
220
n
220
GLY
220
A
LEU
221
n
221
LEU
221
A
ILE
222
n
222
ILE
222
A
LEU
223
n
223
LEU
223
A
LEU
224
n
224
LEU
224
A
ARG
225
n
225
ARG
225
A
SER
226
n
226
SER
226
A
ARG
227
n
227
ARG
227
A
ALA
228
n
228
ALA
228
A
ILE
229
n
229
ILE
229
A
PHE
230
n
230
PHE
230
A
GLY
231
n
231
GLY
231
A
n
232
232
A
n
233
233
A
n
234
234
A
n
235
235
A
n
236
236
A
n
237
237
A
n
238
238
A
n
239
239
A
n
240
240
A
n
241
241
A
n
242
242
A
n
243
243
A
n
244
244
A
n
245
245
A
n
246
246
A
n
247
247
A
n
248
248
A
n
249
249
A
0.8196
-0.0647
-0.0210
0.8953
-0.0068
0.4764
0.0003
0.0771
-0.0344
-0.1329
-0.0211
-0.0047
0.0813
0.0623
0.0208
0.0406
0.0131
-0.0016
0.0164
-0.0040
0.0602
refined
-21.2704
-14.8971
3.1538
X-RAY DIFFRACTION
A
5
A
231
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
4250
-35
21410
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
x,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
69
A
N
VAL
69
A
O
ASN
76
A
O
ASN
76
1
A
GLN
1
A
GLN
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
GLN
3
A
GLN
3
1
Y
1
A
ILE
4
A
ILE
4
1
Y
1
A
GLU
232
A
GLU
232
1
Y
1
A
ALA
233
A
ALA
233
1
Y
1
A
GLU
234
A
GLU
234
1
Y
1
A
ALA
235
A
ALA
235
1
Y
1
A
PRO
236
A
PRO
236
1
Y
1
A
GLU
237
A
GLU
237
1
Y
1
A
PRO
238
A
PRO
238
1
Y
1
A
SER
239
A
SER
239
1
Y
1
A
ALA
240
A
ALA
240
1
Y
1
A
GLY
241
A
GLY
241
1
Y
1
A
ASP
242
A
ASP
242
1
Y
1
A
GLY
243
A
GLY
243
1
Y
1
A
ALA
244
A
ALA
244
1
Y
1
A
ALA
245
A
ALA
245
1
Y
1
A
ALA
246
A
ALA
246
1
Y
1
A
THR
247
A
THR
247
1
Y
1
A
SER
248
A
SER
248
1
Y
1
A
ASP
249
A
ASP
249
1
Y
1
15.28
2.30
115.30
130.58
A
A
A
CA
CB
CG
LEU
LEU
LEU
25
25
25
N
1
5.42
0.90
118.30
123.72
A
A
A
CB
CG
OD1
ASP
ASP
ASP
85
85
85
N
1
-10.76
1.70
111.00
100.24
A
A
A
CB
CG
CD1
LEU
LEU
LEU
127
127
127
N
1
-13.40
1.60
100.20
86.80
A
A
A
CG
SD
CE
MET
MET
MET
145
145
145
N
1
10.39
1.60
110.90
121.29
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
167
167
167
N
1
A
A
CD
OE1
GLU
GLU
9
9
0.085
0.011
1.252
1.337
N
1
A
A
CE2
CD2
TRP
TRP
12
12
0.074
0.012
1.409
1.483
N
1
A
A
CB
OG
SER
SER
169
169
-0.088
0.013
1.418
1.330
N
37.269
0.10
0.00
0.00
-0.65
0.00
0.55
0.936
0.912
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24575
0.20300
0.20644
2.40
47.85
929
10704
10704
8.0
95.65
14.055
0.153
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.380
0.256
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.40
47.85
9
1848
86
0
1753
0.023
0.020
1886
0.008
0.020
1263
2.489
2.011
2562
1.322
3.000
3081
5.608
5.000
226
35.548
22.069
58
17.425
15.000
284
23.969
15.000
7
0.255
0.200
300
0.010
0.020
1995
0.007
0.020
418
2.554
1.500
1123
0.903
1.500
468
3.805
2.000
1798
6.935
3.000
764
8.955
4.500
764
0.296
0.206
2.466
58
696
20
91.95
2.40
100
3UTW
11638
11638
0.00
0.00
1
100
2.40
2.49
1
98.8
data collection
ADSC
Quantum
phasing
PHASES
refinement
REFMAC
5.5.0109
data reduction
DENZO
data scaling
SCALEPACK
Bacteriorhodopsin
Crystal structure of bacteriorhodopsin mutant P50A/Y57F
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
GLU
9
A
GLU
9
HELX_P
A
VAL
34
A
VAL
34
1
1
26
A
ASP
36
A
ASP
36
HELX_P
A
LEU
62
A
LEU
62
1
2
27
A
TRP
80
A
TRP
80
HELX_P
A
VAL
101
A
VAL
101
1
3
22
A
ASP
104
A
ASP
104
HELX_P
A
THR
128
A
THR
128
1
4
25
A
VAL
130
A
VAL
130
HELX_P
A
GLU
161
A
GLU
161
1
5
32
A
ARG
164
A
ARG
164
HELX_P
A
SER
183
A
SER
183
1
6
20
A
ALA
184
A
ALA
184
HELX_P
A
GLY
192
A
GLY
192
1
7
9
A
PRO
200
A
PRO
200
HELX_P
A
ARG
225
A
ARG
225
1
8
26
A
SER
226
A
SER
226
HELX_P
A
PHE
230
A
PHE
230
5
9
5
covale
1.297
one
A
LYS
216
A
NZ
LYS
216
1_555
A
RET
301
B
C15
RET
1_555
PROTON TRANSPORT
MEMBRANE PROTEIN, PHOTORECEPTOR PROTEIN, RETINAL PROTEIN, ION TRANSPORT, PROTON TRANSPORT, SENSORY TRANSDUCTION
BACR_HALSA
UNP
1
14
P02945
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGEAEAPEPSA
GDGAAATSD
14
262
3UTW
1
249
P02945
A
1
1
249
1
PRO
engineered mutation
ALA
50
3UTW
A
P02945
UNP
63
50
1
TYR
engineered mutation
PHE
57
3UTW
A
P02945
UNP
70
57
2
anti-parallel
A
THR
67
A
THR
67
A
PHE
71
A
PHE
71
A
GLU
74
A
GLU
74
A
ILE
78
A
ILE
78
20
C 2 2 21