0.014225 0.000000 0.002688 0.000000 0.014045 0.000000 0.000000 0.000000 0.014057 0.00000 0.00000 0.00000 Biela, A. Heine, A. Klebe, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 100.70 90.00 70.300 71.200 72.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C26 H35 N5 O4 S 513.652 N-(benzylsulfonyl)-D-leucyl-N-(4-carbamimidoylbenzyl)-L-prolinamide peptide-like C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H11 N O6 S 261.252 n O-SULFO-L-TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N NA N 251 R C N 252 R C N 253 R C N 254 S C N 255 R C N 256 N C N 257 N C N 258 N C N 259 N N N 260 N O N 261 N O N 262 N O N 263 N O N 264 N O N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C Y 286 N C Y 287 N C Y 288 N C Y 289 N C Y 290 N C Y 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N P N 305 N O N 306 N O N 307 N O N 308 N O N 309 N N N 310 S C N 311 N C N 312 N O N 313 N C N 314 N C N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N O N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 R C N 345 N O N 346 N C N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N C N 358 N S Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C N 365 N O N 366 N O N 367 N N N 368 R C N 369 N C N 370 N C N 371 N C N 372 N C N 373 N C N 374 N O N 375 N N N 376 S C N 377 N C N 378 N O N 379 N C N 380 N C N 381 N C N 382 N N N 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C N 388 N C N 389 N N N 390 N N Y 391 N C Y 392 N C N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N N Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N N N 456 S C N 457 N C N 458 N O N 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C Y 465 N C N 466 N O N 467 N O N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N N N 480 S C N 481 N C Y 482 N C Y 483 N C Y 484 N C Y 485 N C Y 486 N C Y 487 N C N 488 N O N 489 N S N 490 N O N 491 N O N 492 N O N 493 N C N 494 N O N 495 N O N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N N N 508 S C N 509 N C N 510 N O N 511 N C N 512 N C N 513 N C N 514 N O N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing Y 278 N doub Y 279 N sing Y 280 N sing N 281 N sing Y 282 N doub N 283 N sing Y 284 N doub N 285 N sing Y 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing Y 340 N doub Y 341 N sing Y 342 N sing Y 343 N doub Y 344 N sing N 345 N sing Y 346 N doub N 347 N sing N 348 N sing N 349 N doub N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing Y 372 N doub Y 373 N sing N 374 N sing Y 375 N doub N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing Y 424 N doub Y 425 N sing Y 426 N sing N 427 N sing Y 428 N doub Y 429 N sing Y 430 N sing N 431 N sing Y 432 N sing Y 433 N doub N 434 N sing Y 435 N doub N 436 N sing Y 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N doub N 448 N sing N 449 N sing N 450 N sing N 451 N sing Y 452 N doub Y 453 N sing Y 454 N sing N 455 N sing Y 456 N doub N 457 N sing Y 458 N doub N 459 N sing Y 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing Y 474 N doub Y 475 N sing Y 476 N sing N 477 N sing Y 478 N doub N 479 N sing Y 480 N doub N 481 N sing Y 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N doub N 487 N doub N 488 N sing N 489 N sing N 490 N doub N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N doub N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 55 6094 6110 10.1021/jm300337q 22612268 Ligand binding stepwise disrupts water network in thrombin: enthalpic and entropic changes reveal classical hydrophobic effect 2012 10.2210/pdb3uwj/pdb pdb_00003uwj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Collimating Mirror CCD 2010-06-25 RAYONIX MX-225 Double Crystal Monochromator SINGLE WAVELENGTH M x-ray 1 0.91841 1.0 14.2 BESSY 0.91841 SYNCHROTRON BESSY BEAMLINE 14.2 4096.534 Thrombin Light Chain 3.4.21.5 1 nat polymer 29780.219 Thrombin Heavy Chain 3.4.21.5 1 nat polymer 1662.683 Hirudin variant-2 residues in UNP 60-72 1 syn polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 513.652 N-(benzylsulfonyl)-D-leucyl-N-(4-carbamimidoylbenzyl)-L-prolinamide 2 syn non-polymer 94.971 PHOSPHATE ION 1 syn non-polymer 22.990 SODIUM ION 2 syn non-polymer 18.015 water 349 nat water no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE H polypeptide(L) no yes NGDFEEIPEE(TYS)LQ NGDFEEIPEEYLQ I polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 9606 Homo sapiens Human sample 9606 Homo sapiens 1 2.50 50.90 VAPOR DIFFUSION, HANGING DROP 7.5 15% PEG 8000, 20mM sodium phosphate, 175mM sodium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K 277.15 chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model chem_comp_atom chem_comp_bond repository Initial release Carbohydrate remediation repository Remediation Database references Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary Data collection 1 0 2012-12-12 1 1 2016-07-13 1 2 2020-07-29 1 3 2023-11-08 1 4 2023-12-06 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc RCSB Y PDBJ 2011-12-02 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose TIF N-(benzylsulfonyl)-D-leucyl-N-(4-carbamimidoylbenzyl)-L-prolinamide PO4 PHOSPHATE ION NA SODIUM ION HOH water Synthetic Fragment of Hirudo Medicinalis 6421 Medicinal leech Hirudo medicinalis sample 1H8D PDB experimental model Thrombin inhibitor N-(BENZYLSULFONYL)-D-LEUCYL-N-(4-CARBAMIMIDOYLBENZYL)-L-PROLINAMIDE Peptide-like XE5 60 4 NAG G NAG 260 H TIF 1 5 TIF TIF 302 H TIF 2 5 TIF TIF 303 H PO4 3 6 PO4 PO4 304 H NA 4 7 NA NA 305 H NA 5 7 NA NA 306 H HOH 17 8 HOH HOH 1001 L HOH 19 8 HOH HOH 1002 L HOH 21 8 HOH HOH 1003 L HOH 31 8 HOH HOH 1004 L HOH 36 8 HOH HOH 1005 L HOH 43 8 HOH HOH 1006 L HOH 59 8 HOH HOH 1007 L HOH 61 8 HOH HOH 1008 L HOH 62 8 HOH HOH 1009 L HOH 74 8 HOH HOH 1010 L HOH 79 8 HOH HOH 1011 L HOH 80 8 HOH HOH 1012 L HOH 84 8 HOH HOH 1013 L HOH 85 8 HOH HOH 1014 L HOH 103 8 HOH HOH 1015 L HOH 114 8 HOH HOH 1016 L HOH 119 8 HOH HOH 1017 L HOH 141 8 HOH HOH 1018 L HOH 143 8 HOH HOH 1019 L HOH 152 8 HOH HOH 1020 L HOH 171 8 HOH HOH 1021 L HOH 175 8 HOH HOH 1022 L HOH 182 8 HOH HOH 1023 L HOH 186 8 HOH HOH 1024 L HOH 192 8 HOH HOH 1025 L HOH 193 8 HOH HOH 1026 L HOH 194 8 HOH HOH 1027 L HOH 203 8 HOH HOH 1028 L HOH 210 8 HOH HOH 1029 L HOH 212 8 HOH HOH 1030 L HOH 213 8 HOH HOH 1031 L HOH 229 8 HOH HOH 1032 L HOH 233 8 HOH HOH 1033 L HOH 238 8 HOH HOH 1034 L HOH 242 8 HOH HOH 1035 L HOH 272 8 HOH HOH 1036 L HOH 294 8 HOH HOH 1037 L HOH 301 8 HOH HOH 1038 L HOH 309 8 HOH HOH 1039 L HOH 317 8 HOH HOH 1040 L HOH 322 8 HOH HOH 1041 L HOH 334 8 HOH HOH 1042 L HOH 345 8 HOH HOH 1043 L HOH 349 8 HOH HOH 1044 L HOH 126 8 HOH HOH 1045 L HOH 1 8 HOH HOH 1046 H HOH 2 8 HOH HOH 1047 H HOH 3 8 HOH HOH 1048 H HOH 4 8 HOH HOH 1049 H HOH 5 8 HOH HOH 1050 H HOH 6 8 HOH HOH 1051 H HOH 7 8 HOH HOH 1052 H HOH 8 8 HOH HOH 1053 H HOH 9 8 HOH HOH 1054 H HOH 10 8 HOH HOH 1055 H HOH 11 8 HOH HOH 1056 H HOH 12 8 HOH HOH 1057 H HOH 13 8 HOH HOH 1058 H HOH 14 8 HOH HOH 1059 H HOH 15 8 HOH HOH 1060 H HOH 16 8 HOH HOH 1061 H HOH 18 8 HOH HOH 1062 H HOH 20 8 HOH HOH 1063 H HOH 22 8 HOH HOH 1064 H HOH 23 8 HOH HOH 1065 H HOH 24 8 HOH HOH 1066 H HOH 25 8 HOH HOH 1067 H HOH 26 8 HOH HOH 1068 H HOH 27 8 HOH HOH 1069 H HOH 28 8 HOH HOH 1070 H HOH 29 8 HOH HOH 1071 H HOH 30 8 HOH HOH 1072 H HOH 32 8 HOH HOH 1073 H HOH 33 8 HOH HOH 1074 H HOH 34 8 HOH HOH 1075 H HOH 35 8 HOH HOH 1076 H HOH 37 8 HOH HOH 1077 H HOH 38 8 HOH HOH 1078 H HOH 39 8 HOH HOH 1079 H HOH 40 8 HOH HOH 1080 H HOH 41 8 HOH HOH 1081 H HOH 42 8 HOH HOH 1082 H HOH 44 8 HOH HOH 1083 H HOH 45 8 HOH HOH 1084 H HOH 46 8 HOH HOH 1085 H HOH 47 8 HOH HOH 1086 H HOH 48 8 HOH HOH 1087 H HOH 49 8 HOH HOH 1088 H HOH 50 8 HOH HOH 1089 H HOH 51 8 HOH HOH 1090 H HOH 52 8 HOH HOH 1091 H HOH 53 8 HOH HOH 1092 H HOH 54 8 HOH HOH 1093 H HOH 55 8 HOH HOH 1094 H HOH 56 8 HOH HOH 1095 H HOH 57 8 HOH HOH 1096 H HOH 58 8 HOH HOH 1097 H HOH 60 8 HOH HOH 1098 H HOH 63 8 HOH HOH 1099 H HOH 64 8 HOH HOH 1100 H HOH 65 8 HOH HOH 1101 H HOH 66 8 HOH HOH 1102 H HOH 67 8 HOH HOH 1103 H HOH 68 8 HOH HOH 1104 H HOH 69 8 HOH HOH 1105 H HOH 70 8 HOH HOH 1106 H HOH 71 8 HOH HOH 1107 H HOH 72 8 HOH HOH 1108 H HOH 73 8 HOH HOH 1109 H HOH 75 8 HOH HOH 1110 H HOH 76 8 HOH HOH 1111 H HOH 77 8 HOH HOH 1112 H HOH 78 8 HOH HOH 1113 H HOH 81 8 HOH HOH 1114 H HOH 82 8 HOH HOH 1115 H HOH 83 8 HOH HOH 1116 H HOH 86 8 HOH HOH 1117 H HOH 87 8 HOH HOH 1118 H HOH 88 8 HOH HOH 1119 H HOH 89 8 HOH HOH 1120 H HOH 90 8 HOH HOH 1121 H HOH 91 8 HOH HOH 1122 H HOH 92 8 HOH HOH 1123 H HOH 93 8 HOH HOH 1124 H HOH 94 8 HOH HOH 1125 H HOH 95 8 HOH HOH 1126 H HOH 96 8 HOH HOH 1127 H HOH 97 8 HOH HOH 1128 H HOH 98 8 HOH HOH 1129 H HOH 99 8 HOH HOH 1130 H HOH 100 8 HOH HOH 1131 H HOH 101 8 HOH HOH 1132 H HOH 102 8 HOH HOH 1133 H HOH 104 8 HOH HOH 1134 H HOH 105 8 HOH HOH 1135 H HOH 106 8 HOH HOH 1136 H HOH 107 8 HOH HOH 1137 H HOH 108 8 HOH HOH 1138 H HOH 109 8 HOH HOH 1139 H HOH 110 8 HOH HOH 1140 H HOH 111 8 HOH HOH 1141 H HOH 112 8 HOH HOH 1142 H HOH 113 8 HOH HOH 1143 H HOH 115 8 HOH HOH 1144 H HOH 116 8 HOH HOH 1145 H HOH 117 8 HOH HOH 1146 H HOH 118 8 HOH HOH 1147 H HOH 120 8 HOH HOH 1148 H HOH 121 8 HOH HOH 1149 H HOH 122 8 HOH HOH 1150 H HOH 123 8 HOH HOH 1151 H HOH 124 8 HOH HOH 1152 H HOH 127 8 HOH HOH 1153 H HOH 128 8 HOH HOH 1154 H HOH 129 8 HOH HOH 1155 H HOH 130 8 HOH HOH 1156 H HOH 131 8 HOH HOH 1157 H HOH 132 8 HOH HOH 1158 H HOH 133 8 HOH HOH 1159 H HOH 134 8 HOH HOH 1160 H HOH 135 8 HOH HOH 1161 H HOH 136 8 HOH HOH 1162 H HOH 137 8 HOH HOH 1163 H HOH 138 8 HOH HOH 1164 H HOH 139 8 HOH HOH 1165 H HOH 142 8 HOH HOH 1166 H HOH 144 8 HOH HOH 1167 H HOH 145 8 HOH HOH 1168 H HOH 146 8 HOH HOH 1169 H HOH 147 8 HOH HOH 1170 H HOH 148 8 HOH HOH 1171 H HOH 149 8 HOH HOH 1172 H HOH 150 8 HOH HOH 1173 H HOH 151 8 HOH HOH 1174 H HOH 153 8 HOH HOH 1175 H HOH 154 8 HOH HOH 1176 H HOH 155 8 HOH HOH 1177 H HOH 156 8 HOH HOH 1178 H HOH 157 8 HOH HOH 1179 H HOH 158 8 HOH HOH 1180 H HOH 159 8 HOH HOH 1181 H HOH 160 8 HOH HOH 1182 H HOH 161 8 HOH HOH 1183 H HOH 162 8 HOH HOH 1184 H HOH 164 8 HOH HOH 1185 H HOH 165 8 HOH HOH 1186 H HOH 166 8 HOH HOH 1187 H HOH 167 8 HOH HOH 1188 H HOH 168 8 HOH HOH 1189 H HOH 169 8 HOH HOH 1190 H HOH 172 8 HOH HOH 1191 H HOH 173 8 HOH HOH 1192 H HOH 174 8 HOH HOH 1193 H HOH 176 8 HOH HOH 1194 H HOH 177 8 HOH HOH 1195 H HOH 178 8 HOH HOH 1196 H HOH 179 8 HOH HOH 1197 H HOH 180 8 HOH HOH 1198 H HOH 181 8 HOH HOH 1199 H HOH 183 8 HOH HOH 1200 H HOH 184 8 HOH HOH 1201 H HOH 185 8 HOH HOH 1202 H HOH 187 8 HOH HOH 1203 H HOH 188 8 HOH HOH 1204 H HOH 189 8 HOH HOH 1205 H HOH 190 8 HOH HOH 1206 H HOH 191 8 HOH HOH 1207 H HOH 195 8 HOH HOH 1208 H HOH 196 8 HOH HOH 1209 H HOH 197 8 HOH HOH 1210 H HOH 198 8 HOH HOH 1211 H HOH 199 8 HOH HOH 1212 H HOH 200 8 HOH HOH 1213 H HOH 201 8 HOH HOH 1214 H HOH 202 8 HOH HOH 1215 H HOH 204 8 HOH HOH 1216 H HOH 205 8 HOH HOH 1217 H HOH 206 8 HOH HOH 1218 H HOH 207 8 HOH HOH 1219 H HOH 208 8 HOH HOH 1220 H HOH 211 8 HOH HOH 1221 H HOH 214 8 HOH HOH 1222 H HOH 215 8 HOH HOH 1223 H HOH 216 8 HOH HOH 1224 H HOH 217 8 HOH HOH 1225 H HOH 218 8 HOH HOH 1226 H HOH 219 8 HOH HOH 1227 H HOH 220 8 HOH HOH 1228 H HOH 221 8 HOH HOH 1229 H HOH 222 8 HOH HOH 1230 H HOH 223 8 HOH HOH 1231 H HOH 224 8 HOH HOH 1232 H HOH 225 8 HOH HOH 1233 H HOH 226 8 HOH HOH 1234 H HOH 227 8 HOH HOH 1235 H HOH 228 8 HOH HOH 1236 H HOH 230 8 HOH HOH 1237 H HOH 231 8 HOH HOH 1238 H HOH 234 8 HOH HOH 1239 H HOH 235 8 HOH HOH 1240 H HOH 236 8 HOH HOH 1241 H HOH 237 8 HOH HOH 1242 H HOH 239 8 HOH HOH 1243 H HOH 240 8 HOH HOH 1244 H HOH 241 8 HOH HOH 1245 H HOH 243 8 HOH HOH 1246 H HOH 244 8 HOH HOH 1247 H HOH 246 8 HOH HOH 1248 H HOH 247 8 HOH HOH 1249 H HOH 248 8 HOH HOH 1250 H HOH 249 8 HOH HOH 1251 H HOH 250 8 HOH HOH 1252 H HOH 251 8 HOH HOH 1253 H HOH 252 8 HOH HOH 1254 H HOH 253 8 HOH HOH 1255 H HOH 254 8 HOH HOH 1256 H HOH 255 8 HOH HOH 1257 H HOH 256 8 HOH HOH 1258 H HOH 257 8 HOH HOH 1259 H HOH 258 8 HOH HOH 1260 H HOH 259 8 HOH HOH 1261 H HOH 260 8 HOH HOH 1262 H HOH 261 8 HOH HOH 1263 H HOH 262 8 HOH HOH 1264 H HOH 263 8 HOH HOH 1265 H HOH 264 8 HOH HOH 1266 H HOH 265 8 HOH HOH 1267 H HOH 266 8 HOH HOH 1268 H HOH 267 8 HOH HOH 1269 H HOH 268 8 HOH HOH 1270 H HOH 269 8 HOH HOH 1271 H HOH 270 8 HOH HOH 1272 H HOH 271 8 HOH HOH 1273 H HOH 273 8 HOH HOH 1274 H HOH 274 8 HOH HOH 1275 H HOH 275 8 HOH HOH 1276 H HOH 276 8 HOH HOH 1277 H HOH 277 8 HOH HOH 1278 H HOH 279 8 HOH HOH 1279 H HOH 281 8 HOH HOH 1280 H HOH 282 8 HOH HOH 1281 H HOH 283 8 HOH HOH 1282 H HOH 284 8 HOH HOH 1283 H HOH 285 8 HOH HOH 1284 H HOH 286 8 HOH HOH 1285 H HOH 287 8 HOH HOH 1286 H HOH 288 8 HOH HOH 1287 H HOH 289 8 HOH HOH 1288 H HOH 290 8 HOH HOH 1289 H HOH 291 8 HOH HOH 1290 H HOH 292 8 HOH HOH 1291 H HOH 293 8 HOH HOH 1292 H HOH 295 8 HOH HOH 1293 H HOH 296 8 HOH HOH 1294 H HOH 297 8 HOH HOH 1295 H HOH 298 8 HOH HOH 1296 H HOH 299 8 HOH HOH 1297 H HOH 300 8 HOH HOH 1298 H HOH 302 8 HOH HOH 1299 H HOH 303 8 HOH HOH 1300 H HOH 304 8 HOH HOH 1301 H HOH 305 8 HOH HOH 1302 H HOH 306 8 HOH HOH 1303 H HOH 307 8 HOH HOH 1304 H HOH 308 8 HOH HOH 1305 H HOH 310 8 HOH HOH 1306 H HOH 311 8 HOH HOH 1307 H HOH 312 8 HOH HOH 1308 H HOH 313 8 HOH HOH 1309 H HOH 314 8 HOH HOH 1310 H HOH 315 8 HOH HOH 1311 H HOH 318 8 HOH HOH 1312 H HOH 319 8 HOH HOH 1313 H HOH 320 8 HOH HOH 1314 H HOH 321 8 HOH HOH 1315 H HOH 323 8 HOH HOH 1316 H HOH 324 8 HOH HOH 1317 H HOH 327 8 HOH HOH 1318 H HOH 328 8 HOH HOH 1319 H HOH 329 8 HOH HOH 1320 H HOH 330 8 HOH HOH 1321 H HOH 331 8 HOH HOH 1322 H HOH 332 8 HOH HOH 1323 H HOH 333 8 HOH HOH 1324 H HOH 335 8 HOH HOH 1325 H HOH 336 8 HOH HOH 1326 H HOH 337 8 HOH HOH 1327 H HOH 339 8 HOH HOH 1328 H HOH 340 8 HOH HOH 1329 H HOH 341 8 HOH HOH 1330 H HOH 342 8 HOH HOH 1331 H HOH 343 8 HOH HOH 1332 H HOH 344 8 HOH HOH 1333 H HOH 346 8 HOH HOH 1334 H HOH 347 8 HOH HOH 1335 H HOH 348 8 HOH HOH 1336 H HOH 350 8 HOH HOH 1337 H HOH 351 8 HOH HOH 1338 H HOH 125 8 HOH HOH 1339 I HOH 140 8 HOH HOH 1340 I HOH 163 8 HOH HOH 1341 I HOH 170 8 HOH HOH 1342 I HOH 209 8 HOH HOH 1343 I HOH 232 8 HOH HOH 1344 I HOH 245 8 HOH HOH 1345 I HOH 278 8 HOH HOH 1346 I HOH 280 8 HOH HOH 1347 I HOH 316 8 HOH HOH 1348 I HOH 338 8 HOH HOH 1349 I n 1 H 1 L n 2 G 1 L n 3 F 1 L n 4 E 1 L n 5 D 1 L GLU 1 n 6 C GLU 1 L ALA 1 n 7 B ALA 1 L ASP 1 n 8 A ASP 1 L CYS 1 n 9 CYS 1 L GLY 2 n 10 GLY 2 L LEU 3 n 11 LEU 3 L ARG 4 n 12 ARG 4 L PRO 5 n 13 PRO 5 L LEU 6 n 14 LEU 6 L PHE 7 n 15 PHE 7 L GLU 8 n 16 GLU 8 L LYS 9 n 17 LYS 9 L LYS 10 n 18 LYS 10 L SER 11 n 19 SER 11 L LEU 12 n 20 LEU 12 L GLU 13 n 21 GLU 13 L ASP 14 n 22 ASP 14 L LYS 18 n 23 A LYS 14 L THR 19 n 24 B THR 14 L GLU 20 n 25 C GLU 14 L ARG 21 n 26 D ARG 14 L GLU 22 n 27 E GLU 14 L LEU 23 n 28 F LEU 14 L LEU 24 n 29 G LEU 14 L GLU 25 n 30 H GLU 14 L SER 26 n 31 I SER 14 L TYR 27 n 32 J TYR 14 L ILE 28 n 33 K ILE 14 L n 34 L 14 L n 35 M 14 L n 36 15 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 36 n 22 A SER 36 H PRO 37 n 23 PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H XE5 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H THR 147 n 147 THR 147 H n 148 148 H n 149 149 H n 150 A 149 H n 151 B 149 H n 152 C 149 H n 153 D 149 H n 154 E 149 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 GLY 184 H TYR 184 n 190 A TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 ASP 221 H ARG 221 n 233 A ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H GLY 246 n 258 GLY 246 H n 259 247 H n 1 53 I n 2 54 I ASP 55 n 3 ASP 55 I PHE 56 n 4 PHE 56 I GLU 57 n 5 GLU 57 I GLU 58 n 6 GLU 58 I ILE 59 n 7 ILE 59 I PRO 60 n 8 PRO 60 I GLU 61 n 9 GLU 61 I GLU 62 n 10 GLU 62 I TYS 63 n 11 TYS 63 I LEU 64 n 12 LEU 64 I GLN 65 n 13 GLN 65 I 0.3559 -0.2204 -0.1965 0.4501 0.1678 0.4252 0.2622 0.2747 -0.2804 -0.1951 -0.1346 0.1205 0.1940 -0.0116 0.1996 0.1583 0.0852 -0.0423 0.1660 -0.0690 0.1219 refined 8.1912 -2.7393 11.3984 X-RAY DIFFRACTION 0.2519 -0.2375 0.2162 0.4817 -0.1919 0.2643 0.2504 0.4313 0.0088 -0.2750 -0.2554 -0.1202 0.1207 0.1977 -0.0825 0.1622 0.1206 -0.0005 0.2244 -0.0259 0.0878 refined 16.2362 -1.0897 8.7928 X-RAY DIFFRACTION 0.3978 0.4079 0.0098 0.5437 0.2686 0.6968 0.2154 0.2272 0.0082 0.0086 -0.0405 -0.1990 0.0589 0.2368 0.3342 0.0821 0.0636 0.0280 0.1928 0.0281 0.1161 refined 25.7574 -0.9618 16.6078 X-RAY DIFFRACTION 0.4249 -0.3484 -0.0693 0.2881 0.0205 0.0929 0.0318 0.0445 0.0378 0.0002 -0.0264 -0.0328 -0.0337 0.0146 -0.0030 0.1099 0.0306 -0.0092 0.0914 -0.0114 0.0809 refined 9.3689 5.9721 23.3798 X-RAY DIFFRACTION 0.5870 -0.3633 0.2537 0.2362 -0.1885 0.3678 0.0304 0.0098 -0.2680 0.0458 -0.0115 0.2637 0.1602 -0.0157 -0.0843 0.1241 0.0133 -0.0239 0.0639 0.0045 0.1126 refined 7.9295 -9.5458 26.8870 X-RAY DIFFRACTION 0.4902 -0.1199 0.1573 0.1565 -0.0530 0.3377 0.0401 -0.0568 -0.1400 0.0366 0.0064 0.0582 0.0809 -0.0078 0.0030 0.1034 0.0168 0.0014 0.0818 0.0026 0.1085 refined 10.6306 -4.0860 28.0656 X-RAY DIFFRACTION 0.8286 0.6844 -1.3889 1.0063 -1.1825 2.4111 0.0796 -0.0402 0.2517 0.0430 -0.0120 -0.1727 -0.2896 0.1844 -0.0368 0.1467 -0.0241 0.0193 0.1565 0.0066 0.2533 refined 26.8778 8.8788 21.9780 X-RAY DIFFRACTION 0.0037 -0.0231 -0.0109 0.1747 0.0823 0.0397 0.0774 0.1008 0.0070 -0.1502 0.0265 -0.0512 -0.1073 0.0336 0.0936 0.4092 0.1911 0.0410 0.5288 -0.1130 0.1014 refined 12.0755 -1.5468 -3.5295 X-RAY DIFFRACTION 0.3329 -0.4065 0.1526 0.9271 -0.2205 0.4036 0.0110 0.0597 0.1129 -0.1042 -0.1250 -0.1093 -0.2332 -0.0512 0.0295 0.1539 0.0562 0.0051 0.1216 0.0024 0.1151 refined 2.8750 15.3150 18.2363 X-RAY DIFFRACTION 1.0303 -0.0055 0.0000 0.0703 -0.0156 0.0608 0.0187 -0.0357 -0.1069 -0.0417 -0.0680 0.0349 -0.0168 -0.1345 0.0296 0.1081 0.0426 0.0034 0.1737 -0.0073 0.1190 refined -4.8880 7.5334 22.7639 X-RAY DIFFRACTION 0.0822 0.1147 0.0852 0.2279 0.0224 0.3601 0.0596 -0.0694 -0.0014 0.0061 0.0918 0.0027 -0.0578 -0.1824 -0.0535 0.1325 0.0362 0.0526 0.1637 0.0015 0.1459 refined -1.2797 5.1573 33.1978 X-RAY DIFFRACTION H 16 H 41 X-RAY DIFFRACTION 1 (chain H and resid 16:41) H 42 H 83 X-RAY DIFFRACTION 2 (chain H and resid 42:83) H 84 H 111 X-RAY DIFFRACTION 3 (chain H and resid 84:111) H 112 H 144 X-RAY DIFFRACTION 4 (chain H and resid 112:144) H 145 H 173 X-RAY DIFFRACTION 5 (chain H and resid 145:173) H 174 H 232 X-RAY DIFFRACTION 6 (chain H and resid 174:232) H 233 H 246 X-RAY DIFFRACTION 7 (chain H and resid 233:246) I 55 I 65 X-RAY DIFFRACTION 8 (chain I and resid 55:65) L 1 L 1 X-RAY DIFFRACTION 9 (chain L and resid 1C:11) L 12 L 14 X-RAY DIFFRACTION 10 (chain L and resid 12:14C) L 14 L 14 X-RAY DIFFRACTION 11 (chain L and resid 14D:14K) author_and_software_defined_assembly PISA 3 trimeric 4010 -35 12850 G H ASN 60 GLYCOSYLATION SITE B ASN 53 ASN I TYS 63 O-SULFO-L-TYROSINE C TYS 11 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H N SER 20 B N SER 5 H O VAL 157 B O VAL 162 H O VAL 158 B O VAL 163 H N VAL 138 B N VAL 138 H N ARG 137 B N ARG 137 H O VAL 200 B O VAL 210 H N MET 201 B N MET 211 H O TYR 208 B O TYR 220 H N TRP 215 B N TRP 227 H O PHE 227 B O PHE 239 H O TYR 228 B O TYR 240 H N PHE 181 B N PHE 186 H N ARG 35 B N ARG 20 H O GLU 39 B O GLU 25 H N SER 45 B N SER 31 H O LEU 53 B O LEU 39 H N THR 54 B N THR 40 H O ALA 104 B O ALA 101 H O LYS 107 B O LYS 104 H N GLU 86 B N GLU 82 H O LYS 81 B O LYS 77 H N ILE 68 B N ILE 63 H O LEU 65 B O LEU 60 H N PHE 34 B N PHE 19 A H N TYR 60 B N TYR 47 F H O LYS 60 B O LYS 52 1 H HOH 1062 K HOH 1 H HOH 1267 K HOH C 1 L CG GLU 1 A CG GLU 6 1 Y C 1 L CD GLU 1 A CD GLU 6 1 Y C 1 L OE1 GLU 1 A OE1 GLU 6 1 Y C 1 L OE2 GLU 1 A OE2 GLU 6 1 Y A 1 H CG ASP 186 B CG ASP 193 1 Y A 1 H OD1 ASP 186 B OD1 ASP 193 1 Y A 1 H OD2 ASP 186 B OD2 ASP 193 1 Y 1 H CG LYS 236 B CG LYS 248 1 Y 1 H CD LYS 236 B CD LYS 248 1 Y 1 H CE LYS 236 B CE LYS 248 1 Y 1 H NZ LYS 236 B NZ LYS 248 1 Y 1 H CG LYS 240 B CG LYS 252 1 Y 1 H CD LYS 240 B CD LYS 252 1 Y 1 H CE LYS 240 B CE LYS 252 1 Y 1 H NZ LYS 240 B NZ LYS 252 1 Y 1 I CG GLU 58 C CG GLU 6 1 Y 1 I CD GLU 58 C CD GLU 6 1 Y 1 I OE1 GLU 58 C OE1 GLU 6 1 Y 1 I OE2 GLU 58 C OE2 GLU 6 1 Y 1 I CG GLN 65 C CG GLN 13 1 Y 1 I CD GLN 65 C CD GLN 13 1 Y 1 I OE1 GLN 65 C OE1 GLN 13 1 Y 1 I NE2 GLN 65 C NE2 GLN 13 1 Y 1 H C10 TIF 303 F C10 TIF 1 1 N 1 H C18 TIF 303 F C18 TIF 1 1 N 1 H C19 TIF 303 F C19 TIF 1 1 N 1 H C20 TIF 303 F C20 TIF 1 1 N 1 H C21 TIF 303 F C21 TIF 1 1 N 1 H C11 TIF 303 F C11 TIF 1 1 N 1 H O17 TIF 303 F O17 TIF 1 1 N 1 H N12 TIF 303 F N12 TIF 1 1 N 1 H C13 TIF 303 F C13 TIF 1 1 N 1 H C24 TIF 303 F C24 TIF 1 1 N 1 H O33 TIF 303 F O33 TIF 1 1 N 1 H C14 TIF 303 F C14 TIF 1 1 N 1 H C15 TIF 303 F C15 TIF 1 1 N 1 H C16 TIF 303 F C16 TIF 1 1 N 1 H N25 TIF 303 F N25 TIF 1 1 N 1 H C26 TIF 303 F C26 TIF 1 1 N 1 H C27 TIF 303 F C27 TIF 1 1 N 1 H C32 TIF 303 F C32 TIF 1 1 N 1 H C31 TIF 303 F C31 TIF 1 1 N 1 H C30 TIF 303 F C30 TIF 1 1 N 1 H C34 TIF 303 F C34 TIF 1 1 N 1 H N35 TIF 303 F N35 TIF 1 1 N 1 H N36 TIF 303 F N36 TIF 1 1 N 1 H C29 TIF 303 F C29 TIF 1 1 N 1 H C28 TIF 303 F C28 TIF 1 1 N H 1 L THR 1 A THR 1 1 Y G 1 L PHE 1 A PHE 2 1 Y F 1 L GLY 1 A GLY 3 1 Y E 1 L SER 1 A SER 4 1 Y D 1 L GLY 1 A GLY 5 1 Y L 1 L ASP 14 A ASP 34 1 Y M 1 L GLY 14 A GLY 35 1 Y 1 L ARG 15 A ARG 36 1 Y 1 H TRP 148 B TRP 148 1 Y 1 H THR 149 B THR 149 1 Y A 1 H ALA 149 B ALA 150 1 Y B 1 H ASN 149 B ASN 151 1 Y C 1 H VAL 149 B VAL 152 1 Y D 1 H GLY 149 B GLY 153 1 Y E 1 H LYS 149 B LYS 154 1 Y 1 H GLU 247 B GLU 259 1 Y 1 I ASN 53 C ASN 1 1 Y 1 I GLY 54 C GLY 2 1 Y 1 L PHE 7 -129.47 -88.63 A 1 H TYR 60 -154.98 83.12 G 1 H ASN 60 -156.33 82.99 1 H HIS 71 -130.14 -62.63 1 H ILE 79 -126.88 -59.26 1 H ASN 95 -100.81 79.88 A 1 H GLU 97 -112.95 -73.08 1 H SER 195 -32.86 130.55 100.190 22.1079 6.520 1.3047 0.0000 -3.2169 -1.9783 -0.0000 0.6735 0.1828 0.1601 0.1613 0.1613 1.500 22.496 2635 54651 52016 5.07 92.72 1.000 0.190 0.8976 0.19 Random 1 Free R 0.00 MOLECULAR REPLACEMENT 17.5000 0.72 1.00 1H8D ML FLAT BULK SOLVENT MODEL 59.119 0.400 1.500 22.496 349 2758 68 0 2341 0.018 2574 1.095 3499 16.885 1019 0.074 366 0.005 443 0.2778 0.2629 1.5273 114 2355 19 84.00 0.2548 0.2286 1.5566 128 2429 19 87.00 0.2103 0.2095 1.5884 115 2474 19 89.00 0.2130 0.1987 1.6229 171 2511 19 91.00 0.1850 0.1839 1.6607 120 2548 19 91.00 0.2128 0.1789 1.7022 155 2508 19 91.00 0.1984 0.1734 1.7482 133 2594 19 92.00 0.2280 0.1601 1.7996 148 2625 19 94.00 0.1956 0.1569 1.8577 135 2662 19 94.00 0.1984 0.1594 1.9240 130 2624 19 94.00 0.1779 0.1535 2.0010 143 2647 19 95.00 0.1867 0.1520 2.0920 132 2685 19 96.00 0.1655 0.1486 2.2022 134 2688 19 96.00 0.1817 0.1587 2.3401 145 2674 19 95.00 0.1771 0.1542 2.5206 148 2704 19 96.00 0.1946 0.1691 2.7738 155 2671 19 95.00 0.1935 0.1614 3.1742 157 2672 19 95.00 0.1640 0.1393 3.9955 123 2672 19 94.00 0.1488 0.1491 22.4984 149 2638 19 92.00 13.660 1.50 50 3UWJ 55148 55148 0.053 1 17.7 2.7 97.3 1.50 1.53 1.9 2816 0.468 1 2.6 98.5 data collection MAR345dtb phasing PHASER refinement PHENIX (phenix.refine: 1.7_650) data reduction HKL-2000 data scaling HKL-2000 Human Thrombin In Complex With MI353 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N 7 N N 7 N N 8 N N 8 N N 8 N N L PHE 7 A PHE 15 HELX_P L SER 11 A SER 19 5 1 5 L THR 14 A THR 24 HELX_P L TYR 14 A TYR 32 1 2 9 B J H ALA 55 B ALA 41 HELX_P H CYS 58 B CYS 44 5 3 4 H PRO 60 B PRO 48 HELX_P H ASP 60 B ASP 51 5 4 4 B E H THR 60 B THR 55 HELX_P H ASN 62 B ASN 57 5 5 3 I H ASP 125 B ASP 122 HELX_P H LEU 130 B LEU 130 1 6 9 H GLU 164 B GLU 169 HELX_P H SER 171 B SER 176 1 7 8 H LYS 185 B LYS 191 HELX_P H GLY 186 B GLY 195 5 8 5 C H LEU 234 B LEU 246 HELX_P H GLY 246 B GLY 258 1 9 13 I PRO 60 C PRO 8 HELX_P I LEU 64 C LEU 12 5 10 5 disulf 2.034 L CYS 1 A SG CYS 9 1_555 H CYS 122 B SG CYS 119 1_555 disulf 2.034 H CYS 42 B SG CYS 28 1_555 H CYS 58 B SG CYS 44 1_555 disulf 2.030 H CYS 168 B SG CYS 173 1_555 H CYS 182 B SG CYS 187 1_555 disulf 2.046 H CYS 191 B SG CYS 201 1_555 H CYS 220 B SG CYS 231 1_555 covale 1.435 one G G N-Glycosylation H ASN 60 B ND2 ASN 53 1_555 H NAG 260 D C1 NAG 1_555 covale 1.330 both I GLU 62 C C GLU 10 1_555 I TYS 63 C N TYS 11 1_555 covale 1.328 both I TYS 63 C C TYS 11 1_555 I LEU 64 C N LEU 12 1_555 HYDROLASE/HYDROLASE INHIBITOR Serine Protease, Kringle, Hydrolase, Blood Coagulation, Blood Clotting, Convertion Of Fibrinogen To Fibrin, Cleavage On Pairs Of Basic Residues, Hirudin, Glycosylation, Blood, HYDROLASE-HYDROLASE INHIBITOR complex H SER 36 B SER 22 A 1 H PRO 37 B PRO 23 -4.81 THRB_HUMAN UNP 1 328 P00734 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR THRB_HUMAN UNP 2 364 P00734 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE HIRV2_HIRME UNP 3 60 P09945 NGDFEEIPEEYLQ 328 363 3UWJ 1 15 P00734 H L 1 1 36 364 622 3UWJ 16 247 P00734 H 2 1 259 60 72 3UWJ 53 65 P09945 I 3 1 13 7 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H SER 20 B SER 5 H ASP 21 B ASP 6 H GLN 156 B GLN 161 H PRO 161 B PRO 166 H LYS 135 B LYS 135 H GLY 140 B GLY 140 H PRO 198 B PRO 208 H LYS 202 B LYS 212 H TRP 207 B TRP 219 H TRP 215 B TRP 227 H GLY 226 B GLY 238 H HIS 230 B HIS 242 H MET 180 B MET 185 H ALA 183 B ALA 188 H GLN 30 B GLN 15 H ARG 35 B ARG 20 H GLU 39 B GLU 25 H LEU 46 B LEU 32 H TRP 51 B TRP 37 H THR 54 B THR 40 H ALA 104 B ALA 101 H LEU 108 B LEU 105 H LYS 81 B LYS 77 H ILE 90 B ILE 86 H LEU 64 B LEU 59 H ILE 68 B ILE 63 H GLN 30 B GLN 15 H ARG 35 B ARG 20 H LEU 60 B LEU 46 H TYR 60 B TYR 47 A H LYS 60 B LYS 52 H ASN 60 B ASN 53 F G 5 C 1 2 1