0.011659
0.000000
0.000000
0.000000
0.010579
0.000000
0.000000
0.000000
0.016962
0.000000
0.000000
0.000000
Zhong, N.
Tempel, W.
Wernimont, A.K.
Graslund, S.
Ingerman, L.A.
Korboukh, V.
Kireev, D.B.
Gao, C.
Frye, S.V.
Arrowsmith, C.H.
Edwards, A.M.
Bountra, C.
Weigelt, J.
Brown, P.J.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
85.774
94.530
58.955
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UNKNOWN ATOM OR ION
non-polymer
C32 H43 N5 O2
529.716
[2-(phenylamino)benzene-1,4-diyl]bis{[4-(pyrrolidin-1-yl)piperidin-1-yl]methanone}
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
N
N
N
374
N
N
N
375
N
N
N
376
N
O
N
377
N
O
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
C
N
385
N
C
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
C
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
N
399
N
C
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
Y
426
N
C
Y
427
N
C
N
428
N
C
N
429
N
C
N
430
N
C
N
431
N
C
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
C
N
441
N
C
N
442
N
C
N
443
N
C
N
444
N
N
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
N
459
N
C
N
460
N
C
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
doub
Y
369
N
sing
Y
370
N
doub
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
Y
414
N
doub
Y
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
To be Published
0353
The 3-MBT repeat domain of L3MBTL1 in complex with a methyl-lysine mimic
10.2210/pdb3uwn/pdb
pdb_00003uwn
100
1
1
CCD
2011-09-28
RIGAKU SATURN A200
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-E
37751.211
Lethal(3)malignant brain tumor-like protein 1
UNP RESIDUES 200-530
1
man
polymer
529.716
[2-(phenylamino)benzene-1,4-diyl]bis{[4-(pyrrolidin-1-yl)piperidin-1-yl]methanone}
1
syn
non-polymer
UNKNOWN ATOM OR ION
14
syn
non-polymer
18.015
water
98
nat
water
H-l(3)mbt, H-l(3)mbt protein, L(3)mbt-like, L(3)mbt protein homolog, L3MBTL1
no
no
GEKKECWSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECH
DFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNP
SLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTW
AFKVRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLG
PREPSSASPGG
GEKKECWSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECH
DFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNP
SLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTW
AFKVRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLG
PREPSSASPGG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
L3MBTL1, KIAA0681, L3MBT, L3MBTL
9606
Homo sapiens
511693
Escherichia coli
BL21-V2R-pRARE2
pET28-MHL
1
3.3
62.3
VAPOR DIFFUSION, SITTING DROP
5.5
25% PEG-3350, 0.1 M ammonium sulfate, 0.1 M bis-tris. Crystal was soaked for 2 days in a 0.001 M solution of the ligand., pH 5.5, vapor diffusion, sitting drop, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_initial_refinement_model
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-03-07
1
1
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.type
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-12-02
REL
REL
UWN
[2-(phenylamino)benzene-1,4-diyl]bis{[4-(pyrrolidin-1-yl)piperidin-1-yl]methanone}
UNX
UNKNOWN ATOM OR ION
HOH
water
1OYX
PDB entry 1oyx
PDB
experimental model
UWN
1
2
UWN
UWN
601
A
UNX
1
3
UNX
UNX
602
A
UNX
2
3
UNX
UNX
603
A
UNX
3
3
UNX
UNX
604
A
UNX
4
3
UNX
UNX
605
A
UNX
5
3
UNX
UNX
606
A
UNX
6
3
UNX
UNX
607
A
UNX
7
3
UNX
UNX
608
A
UNX
8
3
UNX
UNX
609
A
UNX
9
3
UNX
UNX
610
A
UNX
10
3
UNX
UNX
611
A
UNX
11
3
UNX
UNX
612
A
UNX
12
3
UNX
UNX
613
A
UNX
13
3
UNX
UNX
614
A
UNX
14
3
UNX
UNX
615
A
HOH
15
4
HOH
HOH
701
A
HOH
18
4
HOH
HOH
702
A
HOH
19
4
HOH
HOH
703
A
HOH
20
4
HOH
HOH
704
A
HOH
22
4
HOH
HOH
705
A
HOH
23
4
HOH
HOH
706
A
HOH
24
4
HOH
HOH
707
A
HOH
25
4
HOH
HOH
708
A
HOH
26
4
HOH
HOH
709
A
HOH
27
4
HOH
HOH
710
A
HOH
28
4
HOH
HOH
711
A
HOH
29
4
HOH
HOH
712
A
HOH
31
4
HOH
HOH
713
A
HOH
32
4
HOH
HOH
714
A
HOH
33
4
HOH
HOH
715
A
HOH
34
4
HOH
HOH
716
A
HOH
35
4
HOH
HOH
717
A
HOH
36
4
HOH
HOH
718
A
HOH
37
4
HOH
HOH
719
A
HOH
38
4
HOH
HOH
720
A
HOH
39
4
HOH
HOH
721
A
HOH
40
4
HOH
HOH
722
A
HOH
41
4
HOH
HOH
723
A
HOH
42
4
HOH
HOH
724
A
HOH
43
4
HOH
HOH
725
A
HOH
44
4
HOH
HOH
726
A
HOH
45
4
HOH
HOH
727
A
HOH
47
4
HOH
HOH
728
A
HOH
48
4
HOH
HOH
729
A
HOH
50
4
HOH
HOH
730
A
HOH
51
4
HOH
HOH
731
A
HOH
52
4
HOH
HOH
732
A
HOH
53
4
HOH
HOH
733
A
HOH
54
4
HOH
HOH
734
A
HOH
55
4
HOH
HOH
735
A
HOH
56
4
HOH
HOH
736
A
HOH
57
4
HOH
HOH
737
A
HOH
58
4
HOH
HOH
738
A
HOH
59
4
HOH
HOH
739
A
HOH
60
4
HOH
HOH
740
A
HOH
61
4
HOH
HOH
741
A
HOH
62
4
HOH
HOH
742
A
HOH
63
4
HOH
HOH
743
A
HOH
64
4
HOH
HOH
744
A
HOH
65
4
HOH
HOH
745
A
HOH
67
4
HOH
HOH
746
A
HOH
68
4
HOH
HOH
747
A
HOH
69
4
HOH
HOH
748
A
HOH
70
4
HOH
HOH
749
A
HOH
71
4
HOH
HOH
750
A
HOH
72
4
HOH
HOH
751
A
HOH
73
4
HOH
HOH
752
A
HOH
74
4
HOH
HOH
753
A
HOH
76
4
HOH
HOH
754
A
HOH
77
4
HOH
HOH
755
A
HOH
80
4
HOH
HOH
756
A
HOH
81
4
HOH
HOH
757
A
HOH
83
4
HOH
HOH
758
A
HOH
84
4
HOH
HOH
759
A
HOH
86
4
HOH
HOH
760
A
HOH
90
4
HOH
HOH
761
A
HOH
92
4
HOH
HOH
762
A
HOH
94
4
HOH
HOH
763
A
HOH
96
4
HOH
HOH
764
A
HOH
99
4
HOH
HOH
765
A
HOH
102
4
HOH
HOH
766
A
HOH
103
4
HOH
HOH
767
A
HOH
104
4
HOH
HOH
768
A
HOH
105
4
HOH
HOH
769
A
HOH
106
4
HOH
HOH
770
A
HOH
107
4
HOH
HOH
771
A
HOH
108
4
HOH
HOH
772
A
HOH
109
4
HOH
HOH
773
A
HOH
110
4
HOH
HOH
774
A
HOH
111
4
HOH
HOH
775
A
HOH
112
4
HOH
HOH
776
A
HOH
113
4
HOH
HOH
777
A
HOH
114
4
HOH
HOH
778
A
HOH
115
4
HOH
HOH
779
A
HOH
116
4
HOH
HOH
780
A
HOH
117
4
HOH
HOH
781
A
HOH
118
4
HOH
HOH
782
A
HOH
119
4
HOH
HOH
783
A
HOH
120
4
HOH
HOH
784
A
HOH
121
4
HOH
HOH
785
A
HOH
122
4
HOH
HOH
786
A
HOH
123
4
HOH
HOH
787
A
HOH
1
4
HOH
HOH
788
A
HOH
2
4
HOH
HOH
789
A
HOH
4
4
HOH
HOH
790
A
HOH
5
4
HOH
HOH
791
A
HOH
6
4
HOH
HOH
792
A
HOH
7
4
HOH
HOH
793
A
HOH
9
4
HOH
HOH
794
A
HOH
10
4
HOH
HOH
795
A
HOH
11
4
HOH
HOH
796
A
HOH
13
4
HOH
HOH
797
A
HOH
14
4
HOH
HOH
798
A
n
1
200
A
n
2
201
A
n
3
202
A
n
4
203
A
GLU
204
n
5
GLU
204
A
CYS
205
n
6
CYS
205
A
TRP
206
n
7
TRP
206
A
SER
207
n
8
SER
207
A
TRP
208
n
9
TRP
208
A
GLU
209
n
10
GLU
209
A
SER
210
n
11
SER
210
A
TYR
211
n
12
TYR
211
A
LEU
212
n
13
LEU
212
A
GLU
213
n
14
GLU
213
A
GLU
214
n
15
GLU
214
A
GLN
215
n
16
GLN
215
A
LYS
216
n
17
LYS
216
A
ALA
217
n
18
ALA
217
A
ILE
218
n
19
ILE
218
A
THR
219
n
20
THR
219
A
ALA
220
n
21
ALA
220
A
PRO
221
n
22
PRO
221
A
VAL
222
n
23
VAL
222
A
SER
223
n
24
SER
223
A
LEU
224
n
25
LEU
224
A
PHE
225
n
26
PHE
225
A
GLN
226
n
27
GLN
226
A
ASP
227
n
28
ASP
227
A
SER
228
n
29
SER
228
A
GLN
229
n
30
GLN
229
A
ALA
230
n
31
ALA
230
A
VAL
231
n
32
VAL
231
A
THR
232
n
33
THR
232
A
HIS
233
n
34
HIS
233
A
ASN
234
n
35
ASN
234
A
LYS
235
n
36
LYS
235
A
ASN
236
n
37
ASN
236
A
GLY
237
n
38
GLY
237
A
PHE
238
n
39
PHE
238
A
LYS
239
n
40
LYS
239
A
LEU
240
n
41
LEU
240
A
GLY
241
n
42
GLY
241
A
MET
242
n
43
MET
242
A
LYS
243
n
44
LYS
243
A
LEU
244
n
45
LEU
244
A
GLU
245
n
46
GLU
245
A
GLY
246
n
47
GLY
246
A
ILE
247
n
48
ILE
247
A
ASP
248
n
49
ASP
248
A
PRO
249
n
50
PRO
249
A
GLN
250
n
51
GLN
250
A
HIS
251
n
52
HIS
251
A
PRO
252
n
53
PRO
252
A
SER
253
n
54
SER
253
A
MET
254
n
55
MET
254
A
TYR
255
n
56
TYR
255
A
PHE
256
n
57
PHE
256
A
ILE
257
n
58
ILE
257
A
LEU
258
n
59
LEU
258
A
THR
259
n
60
THR
259
A
VAL
260
n
61
VAL
260
A
ALA
261
n
62
ALA
261
A
GLU
262
n
63
GLU
262
A
VAL
263
n
64
VAL
263
A
CYS
264
n
65
CYS
264
A
GLY
265
n
66
GLY
265
A
TYR
266
n
67
TYR
266
A
ARG
267
n
68
ARG
267
A
LEU
268
n
69
LEU
268
A
ARG
269
n
70
ARG
269
A
LEU
270
n
71
LEU
270
A
HIS
271
n
72
HIS
271
A
PHE
272
n
73
PHE
272
A
ASP
273
n
74
ASP
273
A
GLY
274
n
75
GLY
274
A
TYR
275
n
76
TYR
275
A
SER
276
n
77
SER
276
A
GLU
277
n
78
GLU
277
A
CYS
278
n
79
CYS
278
A
HIS
279
n
80
HIS
279
A
ASP
280
n
81
ASP
280
A
PHE
281
n
82
PHE
281
A
TRP
282
n
83
TRP
282
A
VAL
283
n
84
VAL
283
A
ASN
284
n
85
ASN
284
A
ALA
285
n
86
ALA
285
A
ASN
286
n
87
ASN
286
A
SER
287
n
88
SER
287
A
PRO
288
n
89
PRO
288
A
ASP
289
n
90
ASP
289
A
ILE
290
n
91
ILE
290
A
HIS
291
n
92
HIS
291
A
PRO
292
n
93
PRO
292
A
ALA
293
n
94
ALA
293
A
GLY
294
n
95
GLY
294
A
TRP
295
n
96
TRP
295
A
PHE
296
n
97
PHE
296
A
GLU
297
n
98
GLU
297
A
LYS
298
n
99
LYS
298
A
THR
299
n
100
THR
299
A
GLY
300
n
101
GLY
300
A
HIS
301
n
102
HIS
301
A
LYS
302
n
103
LYS
302
A
LEU
303
n
104
LEU
303
A
GLN
304
n
105
GLN
304
A
PRO
305
n
106
PRO
305
A
PRO
306
n
107
PRO
306
A
LYS
307
n
108
LYS
307
A
GLY
308
n
109
GLY
308
A
TYR
309
n
110
TYR
309
A
LYS
310
n
111
LYS
310
A
GLU
311
n
112
GLU
311
A
GLU
312
n
113
GLU
312
A
GLU
313
n
114
GLU
313
A
PHE
314
n
115
PHE
314
A
SER
315
n
116
SER
315
A
TRP
316
n
117
TRP
316
A
SER
317
n
118
SER
317
A
GLN
318
n
119
GLN
318
A
TYR
319
n
120
TYR
319
A
LEU
320
n
121
LEU
320
A
ARG
321
n
122
ARG
321
A
SER
322
n
123
SER
322
A
THR
323
n
124
THR
323
A
ARG
324
n
125
ARG
324
A
ALA
325
n
126
ALA
325
A
GLN
326
n
127
GLN
326
A
ALA
327
n
128
ALA
327
A
ALA
328
n
129
ALA
328
A
PRO
329
n
130
PRO
329
A
LYS
330
n
131
LYS
330
A
HIS
331
n
132
HIS
331
A
LEU
332
n
133
LEU
332
A
PHE
333
n
134
PHE
333
A
VAL
334
n
135
VAL
334
A
SER
335
n
136
SER
335
A
n
137
336
A
n
138
337
A
n
139
338
A
n
140
339
A
PRO
340
n
141
PRO
340
A
PRO
341
n
142
PRO
341
A
PRO
342
n
143
PRO
342
A
LEU
343
n
144
LEU
343
A
GLY
344
n
145
GLY
344
A
PHE
345
n
146
PHE
345
A
GLN
346
n
147
GLN
346
A
VAL
347
n
148
VAL
347
A
GLY
348
n
149
GLY
348
A
MET
349
n
150
MET
349
A
LYS
350
n
151
LYS
350
A
LEU
351
n
152
LEU
351
A
GLU
352
n
153
GLU
352
A
ALA
353
n
154
ALA
353
A
VAL
354
n
155
VAL
354
A
ASP
355
n
156
ASP
355
A
ARG
356
n
157
ARG
356
A
MET
357
n
158
MET
357
A
ASN
358
n
159
ASN
358
A
PRO
359
n
160
PRO
359
A
SER
360
n
161
SER
360
A
LEU
361
n
162
LEU
361
A
VAL
362
n
163
VAL
362
A
CYS
363
n
164
CYS
363
A
VAL
364
n
165
VAL
364
A
ALA
365
n
166
ALA
365
A
SER
366
n
167
SER
366
A
VAL
367
n
168
VAL
367
A
THR
368
n
169
THR
368
A
ASP
369
n
170
ASP
369
A
VAL
370
n
171
VAL
370
A
VAL
371
n
172
VAL
371
A
ASP
372
n
173
ASP
372
A
SER
373
n
174
SER
373
A
ARG
374
n
175
ARG
374
A
PHE
375
n
176
PHE
375
A
LEU
376
n
177
LEU
376
A
VAL
377
n
178
VAL
377
A
HIS
378
n
179
HIS
378
A
PHE
379
n
180
PHE
379
A
ASP
380
n
181
ASP
380
A
ASN
381
n
182
ASN
381
A
TRP
382
n
183
TRP
382
A
ASP
383
n
184
ASP
383
A
ASP
384
n
185
ASP
384
A
THR
385
n
186
THR
385
A
TYR
386
n
187
TYR
386
A
ASP
387
n
188
ASP
387
A
TYR
388
n
189
TYR
388
A
TRP
389
n
190
TRP
389
A
CYS
390
n
191
CYS
390
A
ASP
391
n
192
ASP
391
A
PRO
392
n
193
PRO
392
A
SER
393
n
194
SER
393
A
SER
394
n
195
SER
394
A
PRO
395
n
196
PRO
395
A
TYR
396
n
197
TYR
396
A
ILE
397
n
198
ILE
397
A
HIS
398
n
199
HIS
398
A
PRO
399
n
200
PRO
399
A
VAL
400
n
201
VAL
400
A
GLY
401
n
202
GLY
401
A
TRP
402
n
203
TRP
402
A
CYS
403
n
204
CYS
403
A
GLN
404
n
205
GLN
404
A
LYS
405
n
206
LYS
405
A
GLN
406
n
207
GLN
406
A
GLY
407
n
208
GLY
407
A
LYS
408
n
209
LYS
408
A
PRO
409
n
210
PRO
409
A
LEU
410
n
211
LEU
410
A
THR
411
n
212
THR
411
A
PRO
412
n
213
PRO
412
A
PRO
413
n
214
PRO
413
A
GLN
414
n
215
GLN
414
A
ASP
415
n
216
ASP
415
A
TYR
416
n
217
TYR
416
A
PRO
417
n
218
PRO
417
A
ASP
418
n
219
ASP
418
A
PRO
419
n
220
PRO
419
A
n
221
420
A
n
222
421
A
PHE
422
n
223
PHE
422
A
CYS
423
n
224
CYS
423
A
TRP
424
n
225
TRP
424
A
GLU
425
n
226
GLU
425
A
LYS
426
n
227
LYS
426
A
TYR
427
n
228
TYR
427
A
LEU
428
n
229
LEU
428
A
GLU
429
n
230
GLU
429
A
GLU
430
n
231
GLU
430
A
THR
431
n
232
THR
431
A
GLY
432
n
233
GLY
432
A
ALA
433
n
234
ALA
433
A
SER
434
n
235
SER
434
A
ALA
435
n
236
ALA
435
A
VAL
436
n
237
VAL
436
A
PRO
437
n
238
PRO
437
A
THR
438
n
239
THR
438
A
TRP
439
n
240
TRP
439
A
ALA
440
n
241
ALA
440
A
PHE
441
n
242
PHE
441
A
LYS
442
n
243
LYS
442
A
VAL
443
n
244
VAL
443
A
ARG
444
n
245
ARG
444
A
PRO
445
n
246
PRO
445
A
PRO
446
n
247
PRO
446
A
HIS
447
n
248
HIS
447
A
SER
448
n
249
SER
448
A
PHE
449
n
250
PHE
449
A
LEU
450
n
251
LEU
450
A
VAL
451
n
252
VAL
451
A
ASN
452
n
253
ASN
452
A
MET
453
n
254
MET
453
A
LYS
454
n
255
LYS
454
A
LEU
455
n
256
LEU
455
A
GLU
456
n
257
GLU
456
A
ALA
457
n
258
ALA
457
A
VAL
458
n
259
VAL
458
A
ASP
459
n
260
ASP
459
A
ARG
460
n
261
ARG
460
A
ARG
461
n
262
ARG
461
A
ASN
462
n
263
ASN
462
A
PRO
463
n
264
PRO
463
A
ALA
464
n
265
ALA
464
A
LEU
465
n
266
LEU
465
A
ILE
466
n
267
ILE
466
A
ARG
467
n
268
ARG
467
A
VAL
468
n
269
VAL
468
A
ALA
469
n
270
ALA
469
A
SER
470
n
271
SER
470
A
VAL
471
n
272
VAL
471
A
GLU
472
n
273
GLU
472
A
ASP
473
n
274
ASP
473
A
VAL
474
n
275
VAL
474
A
GLU
475
n
276
GLU
475
A
ASP
476
n
277
ASP
476
A
HIS
477
n
278
HIS
477
A
ARG
478
n
279
ARG
478
A
ILE
479
n
280
ILE
479
A
LYS
480
n
281
LYS
480
A
ILE
481
n
282
ILE
481
A
HIS
482
n
283
HIS
482
A
PHE
483
n
284
PHE
483
A
ASP
484
n
285
ASP
484
A
GLY
485
n
286
GLY
485
A
TRP
486
n
287
TRP
486
A
SER
487
n
288
SER
487
A
HIS
488
n
289
HIS
488
A
GLY
489
n
290
GLY
489
A
TYR
490
n
291
TYR
490
A
ASP
491
n
292
ASP
491
A
PHE
492
n
293
PHE
492
A
TRP
493
n
294
TRP
493
A
ILE
494
n
295
ILE
494
A
ASP
495
n
296
ASP
495
A
ALA
496
n
297
ALA
496
A
ASP
497
n
298
ASP
497
A
HIS
498
n
299
HIS
498
A
PRO
499
n
300
PRO
499
A
ASP
500
n
301
ASP
500
A
ILE
501
n
302
ILE
501
A
HIS
502
n
303
HIS
502
A
PRO
503
n
304
PRO
503
A
ALA
504
n
305
ALA
504
A
GLY
505
n
306
GLY
505
A
TRP
506
n
307
TRP
506
A
CYS
507
n
308
CYS
507
A
SER
508
n
309
SER
508
A
LYS
509
n
310
LYS
509
A
THR
510
n
311
THR
510
A
GLY
511
n
312
GLY
511
A
HIS
512
n
313
HIS
512
A
PRO
513
n
314
PRO
513
A
LEU
514
n
315
LEU
514
A
GLN
515
n
316
GLN
515
A
PRO
516
n
317
PRO
516
A
PRO
517
n
318
PRO
517
A
LEU
518
n
319
LEU
518
A
GLY
519
n
320
GLY
519
A
PRO
520
n
321
PRO
520
A
ARG
521
n
322
ARG
521
A
GLU
522
n
323
GLU
522
A
PRO
523
n
324
PRO
523
A
SER
524
n
325
SER
524
A
SER
525
n
326
SER
525
A
ALA
526
n
327
ALA
526
A
SER
527
n
328
SER
527
A
n
329
528
A
n
330
529
A
n
331
530
A
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
281
A
O
PHE
82
A
N
LEU
270
A
N
LEU
71
A
O
ARG
269
A
O
ARG
70
A
N
ALA
261
A
N
ALA
62
A
O
LEU
258
A
O
LEU
59
A
N
LEU
244
A
N
LEU
45
A
N
GLU
245
A
N
GLU
46
A
O
HIS
291
A
O
HIS
92
A
O
PHE
281
A
O
PHE
82
A
N
LEU
270
A
N
LEU
71
A
O
ARG
269
A
O
ARG
70
A
N
ALA
261
A
N
ALA
62
A
N
TYR
255
A
N
TYR
56
A
O
GLN
304
A
O
GLN
105
A
O
TYR
388
A
O
TYR
189
A
N
VAL
377
A
N
VAL
178
A
O
HIS
378
A
O
HIS
179
A
N
SER
366
A
N
SER
167
A
O
ALA
365
A
O
ALA
166
A
N
LEU
351
A
N
LEU
152
A
N
GLU
352
A
N
GLU
153
A
O
HIS
398
A
O
HIS
199
A
O
TYR
388
A
O
TYR
189
A
N
VAL
377
A
N
VAL
178
A
O
HIS
378
A
O
HIS
179
A
N
SER
366
A
N
SER
167
A
N
VAL
362
A
N
VAL
163
A
O
THR
411
A
O
THR
212
A
O
PHE
492
A
O
PHE
293
A
N
ILE
481
A
N
ILE
282
A
O
HIS
482
A
O
HIS
283
A
N
SER
470
A
N
SER
271
A
O
ARG
467
A
O
ARG
268
A
N
ALA
457
A
N
ALA
258
A
N
GLU
456
A
N
GLU
257
A
O
HIS
502
A
O
HIS
303
1
A
SG
CYS
205
A
SG
CYS
6
1
Y
1
A
CG
GLU
209
A
CG
GLU
10
1
Y
1
A
CD
GLU
209
A
CD
GLU
10
1
Y
1
A
OE1
GLU
209
A
OE1
GLU
10
1
Y
1
A
OE2
GLU
209
A
OE2
GLU
10
1
Y
1
A
CD
LYS
235
A
CD
LYS
36
1
Y
1
A
CE
LYS
235
A
CE
LYS
36
1
Y
1
A
NZ
LYS
235
A
NZ
LYS
36
1
Y
1
A
CG
LYS
310
A
CG
LYS
111
1
Y
1
A
CD
LYS
310
A
CD
LYS
111
1
Y
1
A
CE
LYS
310
A
CE
LYS
111
1
Y
1
A
NZ
LYS
310
A
NZ
LYS
111
1
Y
1
A
CG
GLU
311
A
CG
GLU
112
1
Y
1
A
CD
GLU
311
A
CD
GLU
112
1
Y
1
A
OE1
GLU
311
A
OE1
GLU
112
1
Y
1
A
OE2
GLU
311
A
OE2
GLU
112
1
Y
1
A
CG
GLU
312
A
CG
GLU
113
1
Y
1
A
CD
GLU
312
A
CD
GLU
113
1
Y
1
A
OE1
GLU
312
A
OE1
GLU
113
1
Y
1
A
OE2
GLU
312
A
OE2
GLU
113
1
Y
1
A
CG
GLU
313
A
CG
GLU
114
1
Y
1
A
CD
GLU
313
A
CD
GLU
114
1
Y
1
A
OE1
GLU
313
A
OE1
GLU
114
1
Y
1
A
OE2
GLU
313
A
OE2
GLU
114
1
Y
1
A
CG
GLN
404
A
CG
GLN
205
1
Y
1
A
CD
GLN
404
A
CD
GLN
205
1
Y
1
A
OE1
GLN
404
A
OE1
GLN
205
1
Y
1
A
NE2
GLN
404
A
NE2
GLN
205
1
Y
1
A
CD
LYS
408
A
CD
LYS
209
1
Y
1
A
CE
LYS
408
A
CE
LYS
209
1
Y
1
A
NZ
LYS
408
A
NZ
LYS
209
1
Y
1
A
CG
LYS
426
A
CG
LYS
227
1
Y
1
A
CD
LYS
426
A
CD
LYS
227
1
Y
1
A
CE
LYS
426
A
CE
LYS
227
1
Y
1
A
NZ
LYS
426
A
NZ
LYS
227
1
Y
1
A
NZ
LYS
442
A
NZ
LYS
243
1
Y
1
A
CG
ARG
521
A
CG
ARG
322
1
Y
1
A
CD
ARG
521
A
CD
ARG
322
1
Y
1
A
NE
ARG
521
A
NE
ARG
322
1
Y
1
A
CZ
ARG
521
A
CZ
ARG
322
1
Y
1
A
NH1
ARG
521
A
NH1
ARG
322
1
Y
1
A
NH2
ARG
521
A
NH2
ARG
322
1
Y
1
A
C1
UWN
601
B
C1
UWN
1
1
N
1
A
C2
UWN
601
B
C2
UWN
1
1
N
1
A
C3
UWN
601
B
C3
UWN
1
1
N
1
A
C4
UWN
601
B
C4
UWN
1
1
N
1
A
C5
UWN
601
B
C5
UWN
1
1
N
1
A
C6
UWN
601
B
C6
UWN
1
1
N
1
A
C8
UWN
601
B
C8
UWN
1
1
N
1
A
C9
UWN
601
B
C9
UWN
1
1
N
1
A
C10
UWN
601
B
C10
UWN
1
1
N
1
A
C7
UWN
601
B
C7
UWN
1
1
N
1
A
N5
UWN
601
B
N5
UWN
1
1
N
1
A
GLY
200
A
GLY
1
1
Y
1
A
GLU
201
A
GLU
2
1
Y
1
A
LYS
202
A
LYS
3
1
Y
1
A
LYS
203
A
LYS
4
1
Y
1
A
GLN
336
A
GLN
137
1
Y
1
A
SER
337
A
SER
138
1
Y
1
A
HIS
338
A
HIS
139
1
Y
1
A
SER
339
A
SER
140
1
Y
1
A
ASP
420
A
ASP
221
1
Y
1
A
ASN
421
A
ASN
222
1
Y
1
A
PRO
528
A
PRO
329
1
Y
1
A
GLY
529
A
GLY
330
1
Y
1
A
GLY
530
A
GLY
331
1
Y
1
A
LEU
244
-161.47
-168.91
1
A
HIS
251
-162.42
67.69
1
A
ASP
372
43.06
-116.58
1
A
ASP
418
73.94
63.26
1
A
ASN
452
80.53
-15.38
75.270
30.8562
14.600
-1.8200
0.0000
0.0000
1.3000
0.0000
0.5200
0.9260
0.8990
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY
Ligand geometry restraints were prepared on the PRODRG server. The program COOT and the MOLPROBITY server were also used during refinement.
0.2670
0.2309
0.2327
2.1500
29.58
1348
26655
5.1000
99.5000
1.000
0.500
5.2290
0.1340
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.2180
0.1910
0.8000
0.8000
1.2000
PDB entry 1oyx
MAXIMUM LIKELIHOOD
MASK
2.1500
29.58
98
2672
42
0
2532
0.013
0.020
2707
0.002
0.020
1817
1.334
1.933
3716
0.855
3.006
4413
6.480
5.000
328
29.029
23.672
128
13.875
15.000
373
21.504
15.000
11
0.080
0.200
371
0.006
0.021
3053
0.001
0.020
584
0.3480
0.3070
2.2060
92
1673
1765
20
98.6600
2.15
29.58
3UWN
26687
0.112
1
15.0444
6.49
99.75
0.90
2.15
2.27
20941
3815
1
5.49
99.29
0.70
2.27
2.40
21249
3601
1
5.90
99.75
0.48
2.40
2.57
21934
3448
1
6.36
99.87
0.31
2.57
2.78
21433
3185
1
6.73
99.85
0.18
2.78
3.04
20647
2966
1
6.96
99.96
0.09
3.04
3.40
18847
2682
1
7.03
100.00
0.06
3.40
3.93
16858
2409
1
7.00
99.96
0.04
3.93
4.81
14207
2033
1
6.99
99.88
0.04
4.81
6.80
11080
1614
1
6.86
99.86
0.02
6.80
29.58
5881
934
1
6.30
98.32
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2011/05/18
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
CCP4_3.3.20
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.6.0117
data extraction
PDB
deposit@deposit.rcsb.org
August 3, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
XDS
The 3-MBT repeat domain of L3MBTL1 in complex with a methyl-lysine mimic
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN
A
SER
207
A
SER
8
HELX_P
A
LYS
216
A
LYS
17
1
1
10
A
PRO
221
A
PRO
22
HELX_P
A
PHE
225
A
PHE
26
5
2
5
A
GLN
226
A
GLN
27
HELX_P
A
VAL
231
A
VAL
32
1
3
6
A
SER
276
A
SER
77
HELX_P
A
ASP
280
A
ASP
81
5
4
5
A
GLY
294
A
GLY
95
HELX_P
A
GLY
300
A
GLY
101
1
5
7
A
LYS
310
A
LYS
111
HELX_P
A
PHE
314
A
PHE
115
5
6
5
A
SER
315
A
SER
116
HELX_P
A
ARG
324
A
ARG
125
1
7
10
A
PRO
329
A
PRO
130
HELX_P
A
PHE
333
A
PHE
134
5
8
5
A
ASP
383
A
ASP
184
HELX_P
A
ASP
387
A
ASP
188
5
9
5
A
GLY
401
A
GLY
202
HELX_P
A
GLY
407
A
GLY
208
1
10
7
A
CYS
423
A
CYS
224
HELX_P
A
GLY
432
A
GLY
233
1
11
10
A
PRO
437
A
PRO
238
HELX_P
A
PHE
441
A
PHE
242
5
12
5
A
SER
487
A
SER
288
HELX_P
A
ASP
491
A
ASP
292
5
13
5
A
GLY
505
A
GLY
306
HELX_P
A
GLY
511
A
GLY
312
1
14
7
TRANSCRIPTION
STRUCTURAL GENOMICS CONSORTIUM, SGC, MBT REPEAT, histone modification, TRANSCRIPTION
LMBL1_HUMAN
UNP
1
200
Q9Y468
GEKKECWSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECH
DFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNP
SLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTW
AFKVRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLG
PREPSSASPGG
200
530
3UWN
200
530
Q9Y468
A
1
1
331
5
4
5
4
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
281
A
PHE
82
A
ASN
284
A
ASN
85
A
ARG
267
A
ARG
68
A
PHE
272
A
PHE
73
A
HIS
251
A
HIS
52
A
CYS
264
A
CYS
65
A
LYS
243
A
LYS
44
A
ASP
248
A
ASP
49
A
ILE
290
A
ILE
91
A
HIS
291
A
HIS
92
A
PHE
281
A
PHE
82
A
ASN
284
A
ASN
85
A
ARG
267
A
ARG
68
A
PHE
272
A
PHE
73
A
HIS
251
A
HIS
52
A
CYS
264
A
CYS
65
A
LEU
303
A
LEU
104
A
GLN
304
A
GLN
105
A
TYR
388
A
TYR
189
A
CYS
390
A
CYS
191
A
ARG
374
A
ARG
175
A
PHE
379
A
PHE
180
A
VAL
362
A
VAL
163
A
VAL
371
A
VAL
172
A
LYS
350
A
LYS
151
A
VAL
354
A
VAL
155
A
ILE
397
A
ILE
198
A
HIS
398
A
HIS
199
A
TYR
388
A
TYR
189
A
CYS
390
A
CYS
191
A
ARG
374
A
ARG
175
A
PHE
379
A
PHE
180
A
VAL
362
A
VAL
163
A
VAL
371
A
VAL
172
A
LEU
410
A
LEU
211
A
THR
411
A
THR
212
A
PHE
492
A
PHE
293
A
ASP
495
A
ASP
296
A
ARG
478
A
ARG
279
A
PHE
483
A
PHE
284
A
ILE
466
A
ILE
267
A
VAL
474
A
VAL
275
A
LYS
454
A
LYS
255
A
VAL
458
A
VAL
259
A
ILE
501
A
ILE
302
A
HIS
502
A
HIS
303
BINDING SITE FOR RESIDUE UWN A 601
A
UWN
601
Software
8
A
ASP
355
A
ASP
156
8
1_555
A
ASN
358
A
ASN
159
8
1_555
A
LEU
361
A
LEU
162
8
1_555
A
PHE
379
A
PHE
180
8
1_555
A
TRP
382
A
TRP
183
8
1_555
A
TYR
386
A
TYR
187
8
1_555
A
ASP
473
A
ASP
274
8
2_555
A
HOH
744
Q
HOH
8
2_555
18
P 21 21 2