0.009968 0.000000 0.002126 0.000000 0.017666 0.000000 0.000000 0.000000 0.010978 0.00000 0.00000 0.00000 Gridley, C.L. Jaeger, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 102.04 90.00 100.321 56.607 93.144 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H17 N2 O13 P3 466.169 n 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE DNA OH 3 prime terminus C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 R P N 89 N O N 90 N O N 91 N O N 92 N C N 93 S C N 94 N O N 95 R C N 96 N N N 97 N C N 98 N C N 99 N O N 100 N N N 101 N C N 102 N O N 103 N C N 104 N C N 105 N C N 106 N C N 107 N O N 108 R P N 109 N O N 110 N O N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N O N 134 N P N 135 N O N 136 N O N 137 N O N 138 N C N 139 R C N 140 N O N 141 S C N 142 N O N 143 N C N 144 R C Y 145 N N Y 146 N C Y 147 N N Y 148 N C Y 149 N C N 150 N N Y 151 N N Y 152 N C Y 153 N N Y 154 N C N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N O N 170 N P N 171 N O N 172 N O N 173 N O N 174 N C N 175 R C N 176 N O N 177 S C N 178 N O N 179 N C N 180 R C N 181 N N N 182 N C N 183 N O N 184 N N N 185 N C N 186 N N N 187 N C N 188 N C N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N O N 204 N P N 205 N O N 206 N O N 207 N O N 208 N C N 209 R C N 210 N O N 211 S C N 212 N O N 213 N C N 214 R C Y 215 N N Y 216 N C Y 217 N N Y 218 N C N 219 N C N 220 N O N 221 N N N 222 N C N 223 N N N 224 N N Y 225 N C N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N O N 241 N P N 242 N O N 243 N O N 244 N O N 245 N C N 246 R C N 247 N O N 248 S C N 249 N O N 250 N C N 251 R C N 252 N N N 253 N C N 254 N O N 255 N N N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N C N 282 N C N 283 N O N 284 N N N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N C N 302 N C N 303 N O N 304 N O N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 N C N 317 N C N 318 N O N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C Y 330 N C Y 331 N N Y 332 N C Y 333 N C Y 334 N N N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N O N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 S C N 354 N C N 355 N C N 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C N 398 N C N 399 N C N 400 N C N 401 N N N 402 N O N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C N 423 N C N 424 N S N 425 N C N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N NA N 439 N N N 440 S C N 441 N C N 442 N O N 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N C Y 448 N C Y 449 N C N 450 N O N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N N N 463 S C N 464 N C N 465 N O N 466 N C N 467 N C N 468 N C N 469 N O N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N N N 480 S C N 481 N C N 482 N O N 483 N C N 484 N O N 485 N O N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N N N 494 S C N 495 N C N 496 N O N 497 R C N 498 N O N 499 N C N 500 N O N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N N N 511 S C N 512 N C N 513 N O N 514 N C Y 515 N C Y 516 N C Y 517 N C Y 518 N N Y 519 N C Y 520 N C Y 521 N C Y 522 N C Y 523 N C N 524 N O N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N N N 538 S C N 539 N C N 540 N O N 541 N C Y 542 N C Y 543 N C Y 544 N C Y 545 N C Y 546 N C Y 547 N C N 548 N O N 549 N O N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N H N 560 N H N 561 N N N 562 S C N 563 N C N 564 N O N 565 N C N 566 N C N 567 N C N 568 N O N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing Y 152 N sing Y 153 N sing Y 154 N doub N 155 N sing Y 156 N sing Y 157 N sing Y 158 N doub N 159 N sing Y 160 N doub N 161 N sing N 162 N sing Y 163 N sing Y 164 N doub N 165 N sing Y 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing Y 225 N sing Y 226 N sing Y 227 N doub N 228 N sing Y 229 N sing N 230 N sing Y 231 N doub N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing Y 335 N sing Y 336 N doub Y 337 N doub N 338 N sing Y 339 N sing N 340 N sing Y 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N doub N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N doub N 439 N sing N 440 N sing N 441 N sing N 442 N sing Y 443 N doub Y 444 N sing Y 445 N sing N 446 N sing Y 447 N doub N 448 N sing Y 449 N doub N 450 N sing Y 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N doub N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N doub N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N doub N 508 N sing N 509 N sing N 510 N sing N 511 N sing Y 512 N doub Y 513 N sing Y 514 N sing N 515 N sing Y 516 N doub Y 517 N sing Y 518 N sing N 519 N sing Y 520 N sing Y 521 N doub N 522 N sing Y 523 N doub N 524 N sing Y 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N doub N 536 N sing N 537 N sing N 538 N sing N 539 N sing Y 540 N doub Y 541 N sing Y 542 N sing N 543 N sing Y 544 N doub N 545 N sing Y 546 N doub N 547 N sing Y 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N doub N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing US Biochemistry BICHAW 0033 0006-2960 52 4422 4432 10.1021/bi301368f 23651085 Structural Changes in the Hydrophobic Hinge Region Adversely Affect the Activity and Fidelity of the I260Q Mutator DNA Polymerase beta. 2013 10.2210/pdb3uxp/pdb pdb_00003uxp 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-09-14 ADSC QUANTUM 315 Monochromator: Double silicon(111) crystal monochromator with cryogenically-cooled first crystal and sagittally-bent second crystal horizontally-focusing at 3.3:1 demagnification. Mirror: Meridionally-bent fused silica mirror with palladium and uncoated stripes vertically-focusing at 6.6:1 demagnification. SINGLE WAVELENGTH M x-ray 1 1.1 1.0 X25 NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X25 38403.734 DNA polymerase beta 2.7.7.7, 4.2.99.- I260Q 2 man polymer Primer DNA Strand 2177.459 DNA 5'-D(P*AP*TP*GP*TP*GP*AP*G)-3' 2 syn polymer Template DNA Strand 2683.801 DNA 5'-D(P*AP*CP*TP*CP*AP*CP*AP*TP*A)-3' 2 syn polymer 466.169 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE 2 syn non-polymer 22.990 SODIUM ION 7 syn non-polymer 18.015 water 41 nat water no no MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQD IVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQ LPSENDENEYPHRRIDIRLQPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIF DYIQWRYREPKDRSE MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQD IVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQ LPSENDENEYPHRRIDIRLQPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIF DYIQWRYREPKDRSE A,B polypeptide(L) no no (DA)(DT)(DG)(DT)(DG)(DA)(DG) ATGTGAG P,D polydeoxyribonucleotide no no (DA)(DC)(DT)(DC)(DA)(DC)(DA)(DT)(DA) ACTCACATA T,E polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n rat sample Polb 10116 Rattus norvegicus 562 Escherichia coli 1 2.99 58.85 VAPOR DIFFUSION, SITTING DROP 6.5 Peg3350, NaCl, Glycerol, Cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 296K 296 2.317 1 20 P 2 T 9 12.868 P_DT2:DA9_T 1 -11.116 -0.395 -0.045 -0.158 0.851 1 19 P 3 T 8 7.357 P_DG3:DC8_T 2 -17.404 1.650 0.392 -0.149 10.953 1 20 P 4 T 7 -6.311 P_DT4:DA7_T 3 -11.003 -1.295 -0.162 -0.371 -5.758 1 19 P 5 T 6 -1.633 P_DG5:DC6_T 4 -4.735 -0.942 0.456 -0.068 6.113 1 20 P 6 T 5 -0.842 P_DA6:DT5_T 5 -7.782 0.130 0.212 -0.430 2.939 1 P 7 T 4 37.224 P_DG7:DC4_T 6 -9.603 1.134 -0.041 0.803 -9.063 1 20 D 2 E 9 2.297 D_DT2:DA9_E 7 -10.432 -0.870 0.556 -0.414 -5.614 1 19 D 3 E 8 -8.863 D_DG3:DC8_E 8 -16.152 0.367 -0.163 -0.154 -9.705 1 20 D 4 E 7 0.526 D_DT4:DA7_E 9 -19.577 -1.390 -0.091 -0.251 -12.251 1 19 D 5 E 6 6.305 D_DG5:DC6_E 10 -6.854 -0.201 -0.175 0.145 -11.069 1 20 D 6 E 5 -6.609 D_DA6:DT5_E 11 -16.487 0.614 -0.769 -0.182 1.798 1 D 7 E 4 17.807 D_DG7:DC4_E 12 -9.804 1.088 -0.281 0.318 3.510 43.703 P P 2 3 2.722 T T 9 8 3.447 2.025 -0.590 0.917 PP_DT2DG3:DC8DA9_TT 1 -2.363 3.177 43.597 1.026 0.552 2.667 17.787 P P 3 4 4.573 T T 8 7 2.941 1.398 -0.233 -1.478 PP_DG3DT4:DA7DC8_TT 2 4.442 -14.533 17.171 -5.499 3.041 3.316 35.805 P P 4 5 18.761 T T 7 6 3.683 11.332 0.965 -0.286 PP_DT4DG5:DC6DA7_TT 3 -3.266 5.407 33.867 -2.261 -2.087 3.231 37.389 P P 5 6 -2.633 T T 6 5 3.186 -1.686 0.478 -0.599 PP_DG5DA6:DT5DC6_TT 4 2.175 -3.396 37.291 -0.717 -0.465 3.707 35.900 P P 6 7 -0.088 T T 5 4 3.493 -0.054 2.007 -0.454 PP_DA6DG7:DC4DT5_TT 5 4.394 -7.146 35.639 -0.727 -2.563 3.230 36.450 D D 2 3 10.667 E E 9 8 3.347 6.626 -0.787 0.179 DD_DT2DG3:DC8DA9_EE 6 3.788 -6.097 35.668 -0.649 1.792 1.943 21.016 D D 3 4 26.509 E E 8 7 3.311 9.338 0.707 -2.321 DD_DG3DT4:DA7DC8_EE 7 -0.222 0.631 18.847 -9.705 -2.018 3.502 38.335 D D 4 5 5.879 E E 7 6 3.538 3.852 0.972 0.443 DD_DT4DG5:DC6DA7_EE 8 -2.302 3.514 38.081 0.154 -1.791 3.410 37.942 D D 5 6 6.183 E E 6 5 3.514 4.010 0.088 -0.818 DD_DG5DA6:DT5DC6_EE 9 2.634 -4.061 37.648 -1.802 0.222 2.986 37.353 D D 6 7 11.332 E E 5 4 3.036 7.209 0.595 0.279 DD_DA6DG7:DC4DT5_EE 10 -2.717 4.271 36.577 -0.450 -1.262 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations 1 0 2012-12-05 1 1 2013-08-28 1 2 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2011-12-05 REL REL D3T 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE NA SODIUM ION HOH water Primer DNA Strand sample Template DNA Strand sample D3T 1 4 D3T D3T 336 A NA 1 5 NA NA 337 A NA 2 5 NA NA 338 A NA 3 5 NA NA 339 A NA 6 5 NA NA 340 A D3T 1 4 D3T D3T 336 B NA 4 5 NA NA 337 B NA 5 5 NA NA 338 B NA 7 5 NA NA 339 B HOH 2 6 HOH HOH 341 A HOH 7 6 HOH HOH 342 A HOH 10 6 HOH HOH 343 A HOH 20 6 HOH HOH 344 A HOH 21 6 HOH HOH 345 A HOH 23 6 HOH HOH 346 A HOH 24 6 HOH HOH 347 A HOH 28 6 HOH HOH 348 A HOH 29 6 HOH HOH 349 A HOH 37 6 HOH HOH 350 A HOH 39 6 HOH HOH 351 A HOH 43 6 HOH HOH 352 A HOH 44 6 HOH HOH 353 A HOH 1 6 HOH HOH 340 B HOH 5 6 HOH HOH 341 B HOH 6 6 HOH HOH 342 B HOH 9 6 HOH HOH 343 B HOH 11 6 HOH HOH 344 B HOH 15 6 HOH HOH 345 B HOH 22 6 HOH HOH 346 B HOH 25 6 HOH HOH 347 B HOH 26 6 HOH HOH 348 B HOH 30 6 HOH HOH 349 B HOH 31 6 HOH HOH 350 B HOH 33 6 HOH HOH 351 B HOH 35 6 HOH HOH 352 B HOH 40 6 HOH HOH 353 B HOH 41 6 HOH HOH 354 B HOH 45 6 HOH HOH 355 B HOH 47 6 HOH HOH 356 B HOH 14 6 HOH HOH 14 P HOH 34 6 HOH HOH 34 P HOH 12 6 HOH HOH 12 T HOH 18 6 HOH HOH 18 T HOH 36 6 HOH HOH 36 T HOH 46 6 HOH HOH 46 T HOH 19 6 HOH HOH 19 D HOH 3 6 HOH HOH 12 E HOH 4 6 HOH HOH 13 E HOH 17 6 HOH HOH 17 E HOH 38 6 HOH HOH 38 E n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A GLU 9 n 9 GLU 9 A THR 10 n 10 THR 10 A LEU 11 n 11 LEU 11 A ASN 12 n 12 ASN 12 A GLY 13 n 13 GLY 13 A GLY 14 n 14 GLY 14 A ILE 15 n 15 ILE 15 A THR 16 n 16 THR 16 A ASP 17 n 17 ASP 17 A MET 18 n 18 MET 18 A LEU 19 n 19 LEU 19 A VAL 20 n 20 VAL 20 A GLU 21 n 21 GLU 21 A LEU 22 n 22 LEU 22 A ALA 23 n 23 ALA 23 A ASN 24 n 24 ASN 24 A PHE 25 n 25 PHE 25 A GLU 26 n 26 GLU 26 A LYS 27 n 27 LYS 27 A ASN 28 n 28 ASN 28 A VAL 29 n 29 VAL 29 A SER 30 n 30 SER 30 A GLN 31 n 31 GLN 31 A ALA 32 n 32 ALA 32 A ILE 33 n 33 ILE 33 A HIS 34 n 34 HIS 34 A LYS 35 n 35 LYS 35 A TYR 36 n 36 TYR 36 A ASN 37 n 37 ASN 37 A ALA 38 n 38 ALA 38 A TYR 39 n 39 TYR 39 A ARG 40 n 40 ARG 40 A LYS 41 n 41 LYS 41 A ALA 42 n 42 ALA 42 A ALA 43 n 43 ALA 43 A SER 44 n 44 SER 44 A VAL 45 n 45 VAL 45 A ILE 46 n 46 ILE 46 A ALA 47 n 47 ALA 47 A LYS 48 n 48 LYS 48 A TYR 49 n 49 TYR 49 A PRO 50 n 50 PRO 50 A HIS 51 n 51 HIS 51 A LYS 52 n 52 LYS 52 A ILE 53 n 53 ILE 53 A LYS 54 n 54 LYS 54 A SER 55 n 55 SER 55 A GLY 56 n 56 GLY 56 A ALA 57 n 57 ALA 57 A GLU 58 n 58 GLU 58 A ALA 59 n 59 ALA 59 A LYS 60 n 60 LYS 60 A LYS 61 n 61 LYS 61 A LEU 62 n 62 LEU 62 A PRO 63 n 63 PRO 63 A GLY 64 n 64 GLY 64 A VAL 65 n 65 VAL 65 A GLY 66 n 66 GLY 66 A THR 67 n 67 THR 67 A LYS 68 n 68 LYS 68 A ILE 69 n 69 ILE 69 A ALA 70 n 70 ALA 70 A GLU 71 n 71 GLU 71 A LYS 72 n 72 LYS 72 A ILE 73 n 73 ILE 73 A ASP 74 n 74 ASP 74 A GLU 75 n 75 GLU 75 A PHE 76 n 76 PHE 76 A LEU 77 n 77 LEU 77 A ALA 78 n 78 ALA 78 A THR 79 n 79 THR 79 A GLY 80 n 80 GLY 80 A LYS 81 n 81 LYS 81 A LEU 82 n 82 LEU 82 A ARG 83 n 83 ARG 83 A LYS 84 n 84 LYS 84 A LEU 85 n 85 LEU 85 A GLU 86 n 86 GLU 86 A LYS 87 n 87 LYS 87 A ILE 88 n 88 ILE 88 A ARG 89 n 89 ARG 89 A GLN 90 n 90 GLN 90 A ASP 91 n 91 ASP 91 A ASP 92 n 92 ASP 92 A THR 93 n 93 THR 93 A SER 94 n 94 SER 94 A SER 95 n 95 SER 95 A SER 96 n 96 SER 96 A ILE 97 n 97 ILE 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A LEU 100 n 100 LEU 100 A THR 101 n 101 THR 101 A ARG 102 n 102 ARG 102 A VAL 103 n 103 VAL 103 A THR 104 n 104 THR 104 A GLY 105 n 105 GLY 105 A ILE 106 n 106 ILE 106 A GLY 107 n 107 GLY 107 A PRO 108 n 108 PRO 108 A SER 109 n 109 SER 109 A ALA 110 n 110 ALA 110 A ALA 111 n 111 ALA 111 A ARG 112 n 112 ARG 112 A LYS 113 n 113 LYS 113 A LEU 114 n 114 LEU 114 A VAL 115 n 115 VAL 115 A ASP 116 n 116 ASP 116 A GLU 117 n 117 GLU 117 A GLY 118 n 118 GLY 118 A ILE 119 n 119 ILE 119 A LYS 120 n 120 LYS 120 A THR 121 n 121 THR 121 A LEU 122 n 122 LEU 122 A GLU 123 n 123 GLU 123 A ASP 124 n 124 ASP 124 A LEU 125 n 125 LEU 125 A ARG 126 n 126 ARG 126 A LYS 127 n 127 LYS 127 A ASN 128 n 128 ASN 128 A GLU 129 n 129 GLU 129 A ASP 130 n 130 ASP 130 A LYS 131 n 131 LYS 131 A LEU 132 n 132 LEU 132 A ASN 133 n 133 ASN 133 A HIS 134 n 134 HIS 134 A HIS 135 n 135 HIS 135 A GLN 136 n 136 GLN 136 A ARG 137 n 137 ARG 137 A ILE 138 n 138 ILE 138 A GLY 139 n 139 GLY 139 A LEU 140 n 140 LEU 140 A LYS 141 n 141 LYS 141 A TYR 142 n 142 TYR 142 A PHE 143 n 143 PHE 143 A GLU 144 n 144 GLU 144 A ASP 145 n 145 ASP 145 A PHE 146 n 146 PHE 146 A GLU 147 n 147 GLU 147 A LYS 148 n 148 LYS 148 A ARG 149 n 149 ARG 149 A ILE 150 n 150 ILE 150 A PRO 151 n 151 PRO 151 A ARG 152 n 152 ARG 152 A GLU 153 n 153 GLU 153 A GLU 154 n 154 GLU 154 A MET 155 n 155 MET 155 A LEU 156 n 156 LEU 156 A GLN 157 n 157 GLN 157 A MET 158 n 158 MET 158 A GLN 159 n 159 GLN 159 A ASP 160 n 160 ASP 160 A ILE 161 n 161 ILE 161 A VAL 162 n 162 VAL 162 A LEU 163 n 163 LEU 163 A ASN 164 n 164 ASN 164 A GLU 165 n 165 GLU 165 A VAL 166 n 166 VAL 166 A LYS 167 n 167 LYS 167 A LYS 168 n 168 LYS 168 A LEU 169 n 169 LEU 169 A ASP 170 n 170 ASP 170 A PRO 171 n 171 PRO 171 A GLU 172 n 172 GLU 172 A TYR 173 n 173 TYR 173 A ILE 174 n 174 ILE 174 A ALA 175 n 175 ALA 175 A THR 176 n 176 THR 176 A VAL 177 n 177 VAL 177 A CYS 178 n 178 CYS 178 A GLY 179 n 179 GLY 179 A SER 180 n 180 SER 180 A PHE 181 n 181 PHE 181 A ARG 182 n 182 ARG 182 A ARG 183 n 183 ARG 183 A GLY 184 n 184 GLY 184 A ALA 185 n 185 ALA 185 A GLU 186 n 186 GLU 186 A SER 187 n 187 SER 187 A SER 188 n 188 SER 188 A GLY 189 n 189 GLY 189 A ASP 190 n 190 ASP 190 A MET 191 n 191 MET 191 A ASP 192 n 192 ASP 192 A VAL 193 n 193 VAL 193 A LEU 194 n 194 LEU 194 A LEU 195 n 195 LEU 195 A THR 196 n 196 THR 196 A HIS 197 n 197 HIS 197 A PRO 198 n 198 PRO 198 A ASN 199 n 199 ASN 199 A PHE 200 n 200 PHE 200 A THR 201 n 201 THR 201 A SER 202 n 202 SER 202 A GLU 203 n 203 GLU 203 A SER 204 n 204 SER 204 A SER 205 n 205 SER 205 A LYS 206 n 206 LYS 206 A GLN 207 n 207 GLN 207 A PRO 208 n 208 PRO 208 A LYS 209 n 209 LYS 209 A LEU 210 n 210 LEU 210 A LEU 211 n 211 LEU 211 A HIS 212 n 212 HIS 212 A ARG 213 n 213 ARG 213 A VAL 214 n 214 VAL 214 A VAL 215 n 215 VAL 215 A GLU 216 n 216 GLU 216 A GLN 217 n 217 GLN 217 A LEU 218 n 218 LEU 218 A GLN 219 n 219 GLN 219 A LYS 220 n 220 LYS 220 A VAL 221 n 221 VAL 221 A ARG 222 n 222 ARG 222 A PHE 223 n 223 PHE 223 A ILE 224 n 224 ILE 224 A THR 225 n 225 THR 225 A ASP 226 n 226 ASP 226 A THR 227 n 227 THR 227 A LEU 228 n 228 LEU 228 A SER 229 n 229 SER 229 A LYS 230 n 230 LYS 230 A GLY 231 n 231 GLY 231 A GLU 232 n 232 GLU 232 A THR 233 n 233 THR 233 A LYS 234 n 234 LYS 234 A PHE 235 n 235 PHE 235 A MET 236 n 236 MET 236 A GLY 237 n 237 GLY 237 A VAL 238 n 238 VAL 238 A CYS 239 n 239 CYS 239 A GLN 240 n 240 GLN 240 A LEU 241 n 241 LEU 241 A PRO 242 n 242 PRO 242 A SER 243 n 243 SER 243 A GLU 244 n 244 GLU 244 A ASN 245 n 245 ASN 245 A ASP 246 n 246 ASP 246 A GLU 247 n 247 GLU 247 A ASN 248 n 248 ASN 248 A GLU 249 n 249 GLU 249 A TYR 250 n 250 TYR 250 A PRO 251 n 251 PRO 251 A HIS 252 n 252 HIS 252 A ARG 253 n 253 ARG 253 A ARG 254 n 254 ARG 254 A ILE 255 n 255 ILE 255 A ASP 256 n 256 ASP 256 A ILE 257 n 257 ILE 257 A ARG 258 n 258 ARG 258 A LEU 259 n 259 LEU 259 A GLN 260 n 260 GLN 260 A PRO 261 n 261 PRO 261 A LYS 262 n 262 LYS 262 A ASP 263 n 263 ASP 263 A GLN 264 n 264 GLN 264 A TYR 265 n 265 TYR 265 A TYR 266 n 266 TYR 266 A CYS 267 n 267 CYS 267 A GLY 268 n 268 GLY 268 A VAL 269 n 269 VAL 269 A LEU 270 n 270 LEU 270 A TYR 271 n 271 TYR 271 A PHE 272 n 272 PHE 272 A THR 273 n 273 THR 273 A GLY 274 n 274 GLY 274 A SER 275 n 275 SER 275 A ASP 276 n 276 ASP 276 A ILE 277 n 277 ILE 277 A PHE 278 n 278 PHE 278 A ASN 279 n 279 ASN 279 A LYS 280 n 280 LYS 280 A ASN 281 n 281 ASN 281 A MET 282 n 282 MET 282 A ARG 283 n 283 ARG 283 A ALA 284 n 284 ALA 284 A HIS 285 n 285 HIS 285 A ALA 286 n 286 ALA 286 A LEU 287 n 287 LEU 287 A GLU 288 n 288 GLU 288 A LYS 289 n 289 LYS 289 A GLY 290 n 290 GLY 290 A PHE 291 n 291 PHE 291 A THR 292 n 292 THR 292 A ILE 293 n 293 ILE 293 A ASN 294 n 294 ASN 294 A GLU 295 n 295 GLU 295 A TYR 296 n 296 TYR 296 A THR 297 n 297 THR 297 A ILE 298 n 298 ILE 298 A ARG 299 n 299 ARG 299 A PRO 300 n 300 PRO 300 A LEU 301 n 301 LEU 301 A GLY 302 n 302 GLY 302 A VAL 303 n 303 VAL 303 A THR 304 n 304 THR 304 A GLY 305 n 305 GLY 305 A VAL 306 n 306 VAL 306 A ALA 307 n 307 ALA 307 A GLY 308 n 308 GLY 308 A GLU 309 n 309 GLU 309 A PRO 310 n 310 PRO 310 A LEU 311 n 311 LEU 311 A PRO 312 n 312 PRO 312 A VAL 313 n 313 VAL 313 A ASP 314 n 314 ASP 314 A SER 315 n 315 SER 315 A GLU 316 n 316 GLU 316 A GLN 317 n 317 GLN 317 A ASP 318 n 318 ASP 318 A ILE 319 n 319 ILE 319 A PHE 320 n 320 PHE 320 A ASP 321 n 321 ASP 321 A TYR 322 n 322 TYR 322 A ILE 323 n 323 ILE 323 A GLN 324 n 324 GLN 324 A TRP 325 n 325 TRP 325 A ARG 326 n 326 ARG 326 A TYR 327 n 327 TYR 327 A ARG 328 n 328 ARG 328 A GLU 329 n 329 GLU 329 A PRO 330 n 330 PRO 330 A LYS 331 n 331 LYS 331 A ASP 332 n 332 ASP 332 A ARG 333 n 333 ARG 333 A SER 334 n 334 SER 334 A n 335 335 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B n 6 6 B n 7 7 B n 8 8 B GLU 9 n 9 GLU 9 B THR 10 n 10 THR 10 B LEU 11 n 11 LEU 11 B ASN 12 n 12 ASN 12 B GLY 13 n 13 GLY 13 B GLY 14 n 14 GLY 14 B ILE 15 n 15 ILE 15 B THR 16 n 16 THR 16 B ASP 17 n 17 ASP 17 B MET 18 n 18 MET 18 B LEU 19 n 19 LEU 19 B VAL 20 n 20 VAL 20 B GLU 21 n 21 GLU 21 B LEU 22 n 22 LEU 22 B ALA 23 n 23 ALA 23 B ASN 24 n 24 ASN 24 B PHE 25 n 25 PHE 25 B GLU 26 n 26 GLU 26 B LYS 27 n 27 LYS 27 B ASN 28 n 28 ASN 28 B VAL 29 n 29 VAL 29 B SER 30 n 30 SER 30 B GLN 31 n 31 GLN 31 B ALA 32 n 32 ALA 32 B ILE 33 n 33 ILE 33 B HIS 34 n 34 HIS 34 B LYS 35 n 35 LYS 35 B TYR 36 n 36 TYR 36 B ASN 37 n 37 ASN 37 B ALA 38 n 38 ALA 38 B TYR 39 n 39 TYR 39 B ARG 40 n 40 ARG 40 B LYS 41 n 41 LYS 41 B ALA 42 n 42 ALA 42 B ALA 43 n 43 ALA 43 B SER 44 n 44 SER 44 B VAL 45 n 45 VAL 45 B ILE 46 n 46 ILE 46 B ALA 47 n 47 ALA 47 B LYS 48 n 48 LYS 48 B TYR 49 n 49 TYR 49 B PRO 50 n 50 PRO 50 B HIS 51 n 51 HIS 51 B LYS 52 n 52 LYS 52 B ILE 53 n 53 ILE 53 B LYS 54 n 54 LYS 54 B SER 55 n 55 SER 55 B GLY 56 n 56 GLY 56 B ALA 57 n 57 ALA 57 B GLU 58 n 58 GLU 58 B ALA 59 n 59 ALA 59 B LYS 60 n 60 LYS 60 B LYS 61 n 61 LYS 61 B LEU 62 n 62 LEU 62 B PRO 63 n 63 PRO 63 B GLY 64 n 64 GLY 64 B VAL 65 n 65 VAL 65 B GLY 66 n 66 GLY 66 B THR 67 n 67 THR 67 B LYS 68 n 68 LYS 68 B ILE 69 n 69 ILE 69 B ALA 70 n 70 ALA 70 B GLU 71 n 71 GLU 71 B LYS 72 n 72 LYS 72 B ILE 73 n 73 ILE 73 B ASP 74 n 74 ASP 74 B GLU 75 n 75 GLU 75 B PHE 76 n 76 PHE 76 B LEU 77 n 77 LEU 77 B ALA 78 n 78 ALA 78 B THR 79 n 79 THR 79 B GLY 80 n 80 GLY 80 B LYS 81 n 81 LYS 81 B LEU 82 n 82 LEU 82 B ARG 83 n 83 ARG 83 B LYS 84 n 84 LYS 84 B LEU 85 n 85 LEU 85 B GLU 86 n 86 GLU 86 B LYS 87 n 87 LYS 87 B ILE 88 n 88 ILE 88 B ARG 89 n 89 ARG 89 B GLN 90 n 90 GLN 90 B ASP 91 n 91 ASP 91 B ASP 92 n 92 ASP 92 B THR 93 n 93 THR 93 B SER 94 n 94 SER 94 B SER 95 n 95 SER 95 B SER 96 n 96 SER 96 B ILE 97 n 97 ILE 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B LEU 100 n 100 LEU 100 B THR 101 n 101 THR 101 B ARG 102 n 102 ARG 102 B VAL 103 n 103 VAL 103 B THR 104 n 104 THR 104 B GLY 105 n 105 GLY 105 B ILE 106 n 106 ILE 106 B GLY 107 n 107 GLY 107 B PRO 108 n 108 PRO 108 B SER 109 n 109 SER 109 B ALA 110 n 110 ALA 110 B ALA 111 n 111 ALA 111 B ARG 112 n 112 ARG 112 B LYS 113 n 113 LYS 113 B LEU 114 n 114 LEU 114 B VAL 115 n 115 VAL 115 B ASP 116 n 116 ASP 116 B GLU 117 n 117 GLU 117 B GLY 118 n 118 GLY 118 B ILE 119 n 119 ILE 119 B LYS 120 n 120 LYS 120 B THR 121 n 121 THR 121 B LEU 122 n 122 LEU 122 B GLU 123 n 123 GLU 123 B ASP 124 n 124 ASP 124 B LEU 125 n 125 LEU 125 B ARG 126 n 126 ARG 126 B LYS 127 n 127 LYS 127 B ASN 128 n 128 ASN 128 B GLU 129 n 129 GLU 129 B ASP 130 n 130 ASP 130 B LYS 131 n 131 LYS 131 B LEU 132 n 132 LEU 132 B ASN 133 n 133 ASN 133 B HIS 134 n 134 HIS 134 B HIS 135 n 135 HIS 135 B GLN 136 n 136 GLN 136 B ARG 137 n 137 ARG 137 B ILE 138 n 138 ILE 138 B GLY 139 n 139 GLY 139 B LEU 140 n 140 LEU 140 B LYS 141 n 141 LYS 141 B TYR 142 n 142 TYR 142 B PHE 143 n 143 PHE 143 B GLU 144 n 144 GLU 144 B ASP 145 n 145 ASP 145 B PHE 146 n 146 PHE 146 B GLU 147 n 147 GLU 147 B LYS 148 n 148 LYS 148 B ARG 149 n 149 ARG 149 B ILE 150 n 150 ILE 150 B PRO 151 n 151 PRO 151 B ARG 152 n 152 ARG 152 B GLU 153 n 153 GLU 153 B GLU 154 n 154 GLU 154 B MET 155 n 155 MET 155 B LEU 156 n 156 LEU 156 B GLN 157 n 157 GLN 157 B MET 158 n 158 MET 158 B GLN 159 n 159 GLN 159 B ASP 160 n 160 ASP 160 B ILE 161 n 161 ILE 161 B VAL 162 n 162 VAL 162 B LEU 163 n 163 LEU 163 B ASN 164 n 164 ASN 164 B GLU 165 n 165 GLU 165 B VAL 166 n 166 VAL 166 B LYS 167 n 167 LYS 167 B LYS 168 n 168 LYS 168 B LEU 169 n 169 LEU 169 B ASP 170 n 170 ASP 170 B PRO 171 n 171 PRO 171 B GLU 172 n 172 GLU 172 B TYR 173 n 173 TYR 173 B ILE 174 n 174 ILE 174 B ALA 175 n 175 ALA 175 B THR 176 n 176 THR 176 B VAL 177 n 177 VAL 177 B CYS 178 n 178 CYS 178 B GLY 179 n 179 GLY 179 B SER 180 n 180 SER 180 B PHE 181 n 181 PHE 181 B ARG 182 n 182 ARG 182 B ARG 183 n 183 ARG 183 B GLY 184 n 184 GLY 184 B ALA 185 n 185 ALA 185 B GLU 186 n 186 GLU 186 B SER 187 n 187 SER 187 B SER 188 n 188 SER 188 B GLY 189 n 189 GLY 189 B ASP 190 n 190 ASP 190 B MET 191 n 191 MET 191 B ASP 192 n 192 ASP 192 B VAL 193 n 193 VAL 193 B LEU 194 n 194 LEU 194 B LEU 195 n 195 LEU 195 B THR 196 n 196 THR 196 B HIS 197 n 197 HIS 197 B PRO 198 n 198 PRO 198 B ASN 199 n 199 ASN 199 B PHE 200 n 200 PHE 200 B THR 201 n 201 THR 201 B SER 202 n 202 SER 202 B GLU 203 n 203 GLU 203 B SER 204 n 204 SER 204 B SER 205 n 205 SER 205 B LYS 206 n 206 LYS 206 B GLN 207 n 207 GLN 207 B PRO 208 n 208 PRO 208 B LYS 209 n 209 LYS 209 B LEU 210 n 210 LEU 210 B LEU 211 n 211 LEU 211 B HIS 212 n 212 HIS 212 B ARG 213 n 213 ARG 213 B VAL 214 n 214 VAL 214 B VAL 215 n 215 VAL 215 B GLU 216 n 216 GLU 216 B GLN 217 n 217 GLN 217 B LEU 218 n 218 LEU 218 B GLN 219 n 219 GLN 219 B LYS 220 n 220 LYS 220 B VAL 221 n 221 VAL 221 B ARG 222 n 222 ARG 222 B PHE 223 n 223 PHE 223 B ILE 224 n 224 ILE 224 B THR 225 n 225 THR 225 B ASP 226 n 226 ASP 226 B THR 227 n 227 THR 227 B LEU 228 n 228 LEU 228 B SER 229 n 229 SER 229 B LYS 230 n 230 LYS 230 B GLY 231 n 231 GLY 231 B GLU 232 n 232 GLU 232 B THR 233 n 233 THR 233 B LYS 234 n 234 LYS 234 B PHE 235 n 235 PHE 235 B MET 236 n 236 MET 236 B GLY 237 n 237 GLY 237 B VAL 238 n 238 VAL 238 B CYS 239 n 239 CYS 239 B GLN 240 n 240 GLN 240 B LEU 241 n 241 LEU 241 B PRO 242 n 242 PRO 242 B SER 243 n 243 SER 243 B GLU 244 n 244 GLU 244 B ASN 245 n 245 ASN 245 B ASP 246 n 246 ASP 246 B GLU 247 n 247 GLU 247 B ASN 248 n 248 ASN 248 B GLU 249 n 249 GLU 249 B TYR 250 n 250 TYR 250 B PRO 251 n 251 PRO 251 B HIS 252 n 252 HIS 252 B ARG 253 n 253 ARG 253 B ARG 254 n 254 ARG 254 B ILE 255 n 255 ILE 255 B ASP 256 n 256 ASP 256 B ILE 257 n 257 ILE 257 B ARG 258 n 258 ARG 258 B LEU 259 n 259 LEU 259 B GLN 260 n 260 GLN 260 B PRO 261 n 261 PRO 261 B LYS 262 n 262 LYS 262 B ASP 263 n 263 ASP 263 B GLN 264 n 264 GLN 264 B TYR 265 n 265 TYR 265 B TYR 266 n 266 TYR 266 B CYS 267 n 267 CYS 267 B GLY 268 n 268 GLY 268 B VAL 269 n 269 VAL 269 B LEU 270 n 270 LEU 270 B TYR 271 n 271 TYR 271 B PHE 272 n 272 PHE 272 B THR 273 n 273 THR 273 B GLY 274 n 274 GLY 274 B SER 275 n 275 SER 275 B ASP 276 n 276 ASP 276 B ILE 277 n 277 ILE 277 B PHE 278 n 278 PHE 278 B ASN 279 n 279 ASN 279 B LYS 280 n 280 LYS 280 B ASN 281 n 281 ASN 281 B MET 282 n 282 MET 282 B ARG 283 n 283 ARG 283 B ALA 284 n 284 ALA 284 B HIS 285 n 285 HIS 285 B ALA 286 n 286 ALA 286 B LEU 287 n 287 LEU 287 B GLU 288 n 288 GLU 288 B LYS 289 n 289 LYS 289 B GLY 290 n 290 GLY 290 B PHE 291 n 291 PHE 291 B THR 292 n 292 THR 292 B ILE 293 n 293 ILE 293 B ASN 294 n 294 ASN 294 B GLU 295 n 295 GLU 295 B TYR 296 n 296 TYR 296 B THR 297 n 297 THR 297 B ILE 298 n 298 ILE 298 B ARG 299 n 299 ARG 299 B PRO 300 n 300 PRO 300 B LEU 301 n 301 LEU 301 B GLY 302 n 302 GLY 302 B VAL 303 n 303 VAL 303 B THR 304 n 304 THR 304 B GLY 305 n 305 GLY 305 B VAL 306 n 306 VAL 306 B ALA 307 n 307 ALA 307 B GLY 308 n 308 GLY 308 B GLU 309 n 309 GLU 309 B PRO 310 n 310 PRO 310 B LEU 311 n 311 LEU 311 B PRO 312 n 312 PRO 312 B VAL 313 n 313 VAL 313 B ASP 314 n 314 ASP 314 B SER 315 n 315 SER 315 B GLU 316 n 316 GLU 316 B GLN 317 n 317 GLN 317 B ASP 318 n 318 ASP 318 B ILE 319 n 319 ILE 319 B PHE 320 n 320 PHE 320 B ASP 321 n 321 ASP 321 B TYR 322 n 322 TYR 322 B ILE 323 n 323 ILE 323 B GLN 324 n 324 GLN 324 B TRP 325 n 325 TRP 325 B ARG 326 n 326 ARG 326 B TYR 327 n 327 TYR 327 B ARG 328 n 328 ARG 328 B GLU 329 n 329 GLU 329 B PRO 330 n 330 PRO 330 B LYS 331 n 331 LYS 331 B ASP 332 n 332 ASP 332 B ARG 333 n 333 ARG 333 B SER 334 n 334 SER 334 B n 335 335 B DA 1 n 1 DA 1 P DT 2 n 2 DT 2 P DG 3 n 3 DG 3 P DT 4 n 4 DT 4 P DG 5 n 5 DG 5 P DA 6 n 6 DA 6 P DG 7 n 7 DG 7 P DA 3 n 1 DA 3 T DC 4 n 2 DC 4 T DT 5 n 3 DT 5 T DC 6 n 4 DC 6 T DA 7 n 5 DA 7 T DC 8 n 6 DC 8 T DA 9 n 7 DA 9 T DT 10 n 8 DT 10 T DA 11 n 9 DA 11 T DA 1 n 1 DA 1 D DT 2 n 2 DT 2 D DG 3 n 3 DG 3 D DT 4 n 4 DT 4 D DG 5 n 5 DG 5 D DA 6 n 6 DA 6 D DG 7 n 7 DG 7 D DA 3 n 1 DA 3 E DC 4 n 2 DC 4 E DT 5 n 3 DT 5 E DC 6 n 4 DC 6 E DA 7 n 5 DA 7 E DC 8 n 6 DC 8 E DA 9 n 7 DA 9 E DT 10 n 8 DT 10 E DA 11 n 9 DA 11 E 3.3147 0.4113 -0.0988 3.5311 0.3090 3.9375 0.2945 0.1087 -0.1752 0.1357 -0.1296 0.5545 0.8460 -0.2816 -0.1416 0.5719 -0.0692 -0.0780 0.4089 0.0371 0.5910 refined -13.7385 -11.4364 -14.7591 X-RAY DIFFRACTION 2.6522 -2.9223 -0.7674 5.8095 -0.1938 0.1817 0.0364 -0.2602 0.0828 0.0993 -0.1078 -1.0255 -0.0699 0.1178 0.1087 0.4917 -0.0361 -0.0922 0.5298 -0.1121 0.9166 refined 59.0421 3.5147 -25.4678 X-RAY DIFFRACTION 6.1346 1.9349 -2.4425 6.0563 -1.8663 3.7915 -0.1457 0.7499 -0.6453 -0.1342 -0.1776 -0.2942 0.2710 0.2795 0.2710 0.4091 -0.0592 -0.0417 0.5482 -0.1327 0.4937 refined 9.6720 -1.0881 -24.7163 X-RAY DIFFRACTION 9.2887 2.2768 -0.9394 5.8003 0.0602 2.9518 -0.5793 0.8916 0.8937 -0.6269 0.2514 0.5870 0.3458 -0.6835 0.3712 0.5071 -0.1122 0.0335 0.7209 0.0403 0.6943 refined 35.4696 13.8430 -35.1046 X-RAY DIFFRACTION A 9 A 150 X-RAY DIFFRACTION 1 ( CHAIN A AND RESID 9:150 ) B 9 B 150 X-RAY DIFFRACTION 2 ( CHAIN B AND RESID 9:150 ) A 151 A 334 X-RAY DIFFRACTION 3 ( CHAIN A AND RESID 151:334 ) OR ( CHAIN P AND RESID 1:7 ) P 1 P 7 X-RAY DIFFRACTION 3 ( CHAIN A AND RESID 151:334 ) OR ( CHAIN P AND RESID 1:7 ) B 151 B 334 X-RAY DIFFRACTION 4 ( CHAIN B AND RESID 151:334 ) OR ( CHAIN D AND RESID 1:7 ) D 1 D 7 X-RAY DIFFRACTION 4 ( CHAIN B AND RESID 151:334 ) OR ( CHAIN D AND RESID 1:7 ) author_and_software_defined_assembly PISA 3 trimeric author_and_software_defined_assembly PISA 3 trimeric 4050 -56 18170 3920 -51 18500 A THR 101 A O THR 101 1_555 A NA 339 J NA NA 1_555 A VAL 103 A O VAL 103 1_555 97.7 A THR 101 A O THR 101 1_555 A NA 339 J NA NA 1_555 A ILE 106 A O ILE 106 1_555 85.4 A VAL 103 A O VAL 103 1_555 A NA 339 J NA NA 1_555 A ILE 106 A O ILE 106 1_555 81.0 A THR 101 A O THR 101 1_555 A NA 339 J NA NA 1_555 P DA 6 C OP2 DA 6 1_555 134.8 A VAL 103 A O VAL 103 1_555 A NA 339 J NA NA 1_555 P DA 6 C OP2 DA 6 1_555 120.8 A ILE 106 A O ILE 106 1_555 A NA 339 J NA NA 1_555 P DA 6 C OP2 DA 6 1_555 79.0 A ASP 190 A OD1 ASP 190 1_555 A NA 338 I NA NA 1_555 A ASP 190 A O ASP 190 1_555 62.1 A ASP 190 A OD1 ASP 190 1_555 A NA 338 I NA NA 1_555 A ASP 192 A OD2 ASP 192 1_555 90.3 A ASP 190 A O ASP 190 1_555 A NA 338 I NA NA 1_555 A ASP 192 A OD2 ASP 192 1_555 81.9 A ASP 190 A OD1 ASP 190 1_555 A NA 338 I NA NA 1_555 A D3T 336 G O1B D3T 1_555 141.3 A ASP 190 A O ASP 190 1_555 A NA 338 I NA NA 1_555 A D3T 336 G O1B D3T 1_555 134.0 A ASP 192 A OD2 ASP 192 1_555 A NA 338 I NA NA 1_555 A D3T 336 G O1B D3T 1_555 123.5 A ASP 190 A OD1 ASP 190 1_555 A NA 338 I NA NA 1_555 A D3T 336 G O1A D3T 1_555 86.4 A ASP 190 A O ASP 190 1_555 A NA 338 I NA NA 1_555 A D3T 336 G O1A D3T 1_555 147.9 A ASP 192 A OD2 ASP 192 1_555 A NA 338 I NA NA 1_555 A D3T 336 G O1A D3T 1_555 93.3 A D3T 336 G O1B D3T 1_555 A NA 338 I NA NA 1_555 A D3T 336 G O1A D3T 1_555 74.4 B THR 101 B O THR 101 1_555 B NA 338 N NA NA 1_555 B VAL 103 B O VAL 103 1_555 87.7 B THR 101 B O THR 101 1_555 B NA 338 N NA NA 1_555 B ILE 106 B O ILE 106 1_555 92.9 B VAL 103 B O VAL 103 1_555 B NA 338 N NA NA 1_555 B ILE 106 B O ILE 106 1_555 69.2 B THR 101 B O THR 101 1_555 B NA 338 N NA NA 1_555 D DA 6 E OP2 DA 6 1_555 156.7 B VAL 103 B O VAL 103 1_555 B NA 338 N NA NA 1_555 D DA 6 E OP2 DA 6 1_555 103.2 B ILE 106 B O ILE 106 1_555 B NA 338 N NA NA 1_555 D DA 6 E OP2 DA 6 1_555 72.5 B ASP 192 B OD2 ASP 192 1_555 B NA 337 M NA NA 1_555 B D3T 336 L O1A D3T 1_555 65.1 B ASP 192 B OD2 ASP 192 1_555 B NA 337 M NA NA 1_555 B D3T 336 L O1B D3T 1_555 80.4 B D3T 336 L O1A D3T 1_555 B NA 337 M NA NA 1_555 B D3T 336 L O1B D3T 1_555 56.8 B ASP 192 B OD2 ASP 192 1_555 B NA 337 M NA NA 1_555 B D3T 336 L O3B D3T 1_555 117.5 B D3T 336 L O1A D3T 1_555 B NA 337 M NA NA 1_555 B D3T 336 L O3B D3T 1_555 57.5 B D3T 336 L O1B D3T 1_555 B NA 337 M NA NA 1_555 B D3T 336 L O3B D3T 1_555 49.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 150 A N ILE 150 A O SER 188 A O SER 188 A N ILE 174 A N ILE 174 A O THR 196 A O THR 196 A N LEU 195 A N LEU 195 A O ARG 258 A O ARG 258 A O ILE 255 A O ILE 255 A N GLY 237 A N GLY 237 A O MET 236 A O MET 236 A N SER 229 A N SER 229 B N ILE 150 B N ILE 150 B O SER 188 B O SER 188 B N ILE 174 B N ILE 174 B O THR 196 B O THR 196 B N LEU 195 B N LEU 195 B O ARG 258 B O ARG 258 B O ARG 253 B O ARG 253 B N CYS 239 B N CYS 239 B O VAL 238 B O VAL 238 B N THR 225 B N THR 225 B N THR 292 B N THR 292 B O ARG 299 B O ARG 299 1 P O3' DG 7 C O3' DG 7 0 Y 1 T C5' DA 11 D C5' DA 9 1 Y 1 T C4' DA 11 D C4' DA 9 1 Y 1 T O4' DA 11 D O4' DA 9 1 Y 1 T C3' DA 11 D C3' DA 9 1 Y 1 T O3' DA 11 D O3' DA 9 1 Y 1 T C2' DA 11 D C2' DA 9 1 Y 1 T C1' DA 11 D C1' DA 9 1 Y 1 T N9 DA 11 D N9 DA 9 1 Y 1 T C8 DA 11 D C8 DA 9 1 Y 1 T N7 DA 11 D N7 DA 9 1 Y 1 T C5 DA 11 D C5 DA 9 1 Y 1 T C6 DA 11 D C6 DA 9 1 Y 1 T N6 DA 11 D N6 DA 9 1 Y 1 T N1 DA 11 D N1 DA 9 1 Y 1 T C2 DA 11 D C2 DA 9 1 Y 1 T N3 DA 11 D N3 DA 9 1 Y 1 T C4 DA 11 D C4 DA 9 1 Y 1 D O3' DG 7 E O3' DG 7 0 Y 1 E C5' DA 11 F C5' DA 9 1 Y 1 E C4' DA 11 F C4' DA 9 1 Y 1 E O4' DA 11 F O4' DA 9 1 Y 1 E C3' DA 11 F C3' DA 9 1 Y 1 E O3' DA 11 F O3' DA 9 1 Y 1 E C2' DA 11 F C2' DA 9 1 Y 1 E C1' DA 11 F C1' DA 9 1 Y 1 E N9 DA 11 F N9 DA 9 1 Y 1 E C8 DA 11 F C8 DA 9 1 Y 1 E N7 DA 11 F N7 DA 9 1 Y 1 E C5 DA 11 F C5 DA 9 1 Y 1 E C6 DA 11 F C6 DA 9 1 Y 1 E N6 DA 11 F N6 DA 9 1 Y 1 E N1 DA 11 F N1 DA 9 1 Y 1 E C2 DA 11 F C2 DA 9 1 Y 1 E N3 DA 11 F N3 DA 9 1 Y 1 E C4 DA 11 F C4 DA 9 1 Y 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A LYS 3 A LYS 3 1 Y 1 A ARG 4 A ARG 4 1 Y 1 A LYS 5 A LYS 5 1 Y 1 A ALA 6 A ALA 6 1 Y 1 A PRO 7 A PRO 7 1 Y 1 A GLN 8 A GLN 8 1 Y 1 A GLU 9 A GLU 9 0 Y 1 A GLU 335 A GLU 335 1 Y 1 B MET 1 B MET 1 1 Y 1 B SER 2 B SER 2 1 Y 1 B LYS 3 B LYS 3 1 Y 1 B ARG 4 B ARG 4 1 Y 1 B LYS 5 B LYS 5 1 Y 1 B ALA 6 B ALA 6 1 Y 1 B PRO 7 B PRO 7 1 Y 1 B GLN 8 B GLN 8 1 Y 1 B GLU 9 B GLU 9 0 Y 1 B GLU 335 B GLU 335 1 Y 1 A A OH O TYR LEU 173 210 2.18 1 A A GLN ALA 31 32 -148.92 1 11.20 1.50 119.30 130.50 A A A C N CA GLU PRO PRO 309 310 310 Y 1 9.32 1.50 119.30 128.62 B B B C N CA TYR PRO PRO 49 50 50 Y 1 -4.74 0.40 104.50 99.76 P P P O4' C4' C3' DA DA DA 1 1 1 N 1 3.34 0.30 108.30 111.64 P P P O4' C1' N9 DA DA DA 1 1 1 N 1 -6.34 0.40 104.50 98.16 P P P O4' C4' C3' DT DT DT 4 4 4 N 1 -6.46 1.00 110.10 103.64 P P P C1' O4' C4' DT DT DT 4 4 4 N 1 6.79 0.30 108.30 115.09 P P P O4' C1' N1 DT DT DT 4 4 4 N 1 -4.17 0.60 122.30 118.13 P P P N3 C2 O2 DT DT DT 4 4 4 N 1 -9.73 1.60 120.90 111.17 P P P P O5' C5' DG DG DG 5 5 5 N 1 -4.38 0.40 104.50 100.12 P P P O4' C4' C3' DG DG DG 5 5 5 N 1 6.80 0.30 108.30 115.10 P P P O4' C1' N9 DG DG DG 5 5 5 N 1 2.72 0.30 108.30 111.02 P P P O4' C1' N9 DA DA DA 6 6 6 N 1 -4.82 0.70 108.00 103.18 P P P O4' C1' N9 DG DG DG 7 7 7 N 1 3.91 0.60 118.90 122.81 T T T N1 C2 O2 DC DC DC 4 4 4 N 1 -4.38 0.70 121.90 117.52 T T T N3 C2 O2 DC DC DC 4 4 4 N 1 2.99 0.30 108.30 111.29 T T T O4' C1' N1 DC DC DC 6 6 6 N 1 5.71 0.60 118.60 124.31 T T T N1 C6 N6 DA DA DA 7 7 7 N 1 -5.64 0.40 104.50 98.86 T T T O4' C4' C3' DC DC DC 8 8 8 N 1 3.66 0.30 108.30 111.96 T T T O4' C1' N1 DC DC DC 8 8 8 N 1 4.22 0.60 118.60 122.82 T T T N1 C6 N6 DA DA DA 9 9 9 N 1 -3.93 0.40 104.50 100.57 T T T O4' C4' C3' DT DT DT 10 10 10 N 1 2.63 0.30 108.30 110.93 T T T O4' C1' N1 DT DT DT 10 10 10 N 1 10.42 1.60 120.90 131.32 D D D P O5' C5' DA DA DA 1 1 1 N 1 -7.88 0.40 104.50 96.62 D D D O4' C4' C3' DA DA DA 1 1 1 N 1 2.00 0.30 108.30 110.30 D D D O4' C1' N9 DA DA DA 1 1 1 N 1 2.76 0.30 108.30 111.06 D D D O4' C1' N1 DT DT DT 2 2 2 N 1 -4.45 0.40 104.50 100.05 D D D O4' C4' C3' DT DT DT 4 4 4 N 1 4.82 0.30 108.30 113.12 D D D O4' C1' N1 DT DT DT 4 4 4 N 1 -4.78 0.60 122.30 117.52 D D D N3 C2 O2 DT DT DT 4 4 4 N 1 -2.76 0.40 104.50 101.74 D D D O4' C4' C3' DG DG DG 5 5 5 N 1 6.17 0.30 108.30 114.47 D D D O4' C1' N9 DG DG DG 5 5 5 N 1 -2.99 0.40 104.50 101.51 E E E O4' C4' C3' DA DA DA 3 3 3 N 1 -2.90 0.40 104.50 101.60 E E E O4' C4' C3' DC DC DC 4 4 4 N 1 -8.05 1.00 110.10 102.05 E E E C1' O4' C4' DC DC DC 4 4 4 N 1 3.73 0.30 108.30 112.03 E E E O4' C1' N1 DC DC DC 4 4 4 N 1 -3.25 0.40 104.50 101.25 E E E O4' C4' C3' DT DT DT 5 5 5 N 1 4.66 0.30 108.30 112.96 E E E O4' C1' N1 DT DT DT 5 5 5 N 1 2.45 0.30 108.30 110.75 E E E O4' C1' N1 DC DC DC 6 6 6 N 1 5.30 0.30 108.30 113.60 E E E O4' C1' N1 DC DC DC 8 8 8 N 1 -4.88 0.80 102.40 97.52 E E E C3' C2' C1' DA DA DA 9 9 9 N 1 T T O3' C3' DA DA 7 7 -0.043 0.006 1.419 1.376 N 1 E E O3' C3' DC DC 8 8 0.082 0.013 1.435 1.517 N 1 A LEU 11 -81.13 43.17 1 A ASN 24 -52.72 -7.97 1 A LYS 81 -123.61 -141.73 1 A THR 101 -29.43 -30.96 1 A LYS 120 -140.30 -14.95 1 A ASN 128 -142.30 44.31 1 A LEU 140 -57.75 -71.38 1 A GLU 153 -36.03 -39.05 1 A ASP 170 178.57 101.72 1 A PRO 171 -59.77 -7.09 1 A CYS 178 -118.10 -144.43 1 A LYS 206 64.66 -91.18 1 A SER 229 -170.44 141.96 1 A GLN 240 -173.08 126.75 1 A SER 243 -48.22 96.26 1 A GLU 244 -57.40 60.14 1 A ASN 245 62.86 98.11 1 A ASP 246 54.85 118.31 1 A GLU 247 82.54 -50.89 1 A GLU 249 -6.93 130.13 1 A GLN 264 -108.97 41.68 1 A PHE 272 -66.17 -89.20 1 A THR 273 -31.95 90.94 1 A HIS 285 -67.72 25.69 1 A ASN 294 -111.06 -166.82 1 A VAL 303 -48.86 -74.36 1 A THR 304 -79.28 -110.30 1 A PRO 310 -31.84 -133.26 1 A LEU 311 -177.67 136.80 1 A GLN 317 -32.98 -39.47 1 A PRO 330 -61.59 94.84 1 A LYS 331 162.02 -14.29 1 B GLU 117 -99.45 -124.13 1 B LYS 120 -135.65 -33.94 1 B ASP 160 -94.24 58.38 1 B ILE 161 -139.16 -41.99 1 B ASP 170 -169.96 109.45 1 B CYS 178 -126.39 -147.64 1 B ARG 182 161.76 12.23 1 B ASP 190 172.12 164.66 1 B SER 205 61.85 133.80 1 B GLN 207 -40.56 102.85 1 B GLN 207 -40.48 102.84 1 B ARG 222 35.85 45.47 1 B PRO 242 -53.08 107.74 1 B SER 243 -54.19 81.87 1 B ASN 245 57.53 -165.24 1 B ASP 246 -57.07 60.34 1 B GLU 247 61.80 109.36 1 B PRO 261 -50.35 101.96 1 B SER 275 177.02 166.25 1 B ASP 276 -25.64 -70.80 1 B GLU 295 -59.95 6.63 1 B VAL 303 -60.03 55.77 1 B THR 304 -146.01 -64.84 1 B ASP 314 -156.60 1.68 1 B GLN 324 59.44 7.16 1 B LYS 331 -57.43 -8.75 -10.8835 -0.0000 2.5565 -13.1072 -0.0000 23.9908 0.2920 0.2182 0.24 0.2248 2.723 27.195 2008 25030 8.02 90.08 0.85 random 1 0.09 MOLECULAR REPLACEMENT 35.81 0.98 1.20 ML FLAT BULK SOLVENT MODEL 38.015 0.271 2.723 27.195 41 5976 63 624 5248 0.009 6136 1.479 8402 21.693 2420 0.096 912 0.005 982 0.4549 0.3514 2.7907 102 1202 66.00 0.3993 0.3488 2.8660 126 1426 78.00 0.4363 0.3267 2.9503 142 1403 79.00 0.3776 0.3102 3.0454 125 1466 82.00 0.3729 0.2820 3.1541 138 1563 87.00 0.3270 0.2643 3.2801 138 1673 91.00 0.3475 0.2623 3.4292 146 1655 92.00 0.3828 0.2587 3.6096 144 1747 95.00 0.3205 0.2244 3.8351 160 1753 97.00 0.2990 0.1834 4.1303 151 1763 96.00 0.2436 0.1614 4.5442 156 1815 99.00 0.2482 0.1708 5.1978 157 1824 98.00 0.2825 0.2073 6.5337 155 1817 99.00 0.2587 0.1994 27.1959 168 1915 100.00 2.723 27.195 3UXP 25030 1.0 1.0 1 90.08 2.7226 2.7907 1 66 2.7907 2.8660 1 78 2.8660 2.9503 1 79 2.9503 3.0454 1 82 3.0454 3.1541 1 87 3.1541 3.2801 1 91 data collection CBASS phasing PHASER refinement PHENIX (phenix.refine: 1.7.2_869) data reduction HKL-2000 data scaling HKL-2000 Co-crystal Structure of Rat DNA polymerase beta Mutator I260Q: Enzyme-DNA-ddTTP 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N 4 N N 5 N N 5 N N 5 N N 6 N N 6 N N 6 N N 6 N N 6 N N 6 N N A ASN 12 A ASN 12 HELX_P A VAL 29 A VAL 29 1 1 18 A ILE 33 A ILE 33 HELX_P A TYR 49 A TYR 49 1 2 17 A SER 55 A SER 55 HELX_P A LYS 61 A LYS 61 1 3 7 A GLY 66 A GLY 66 HELX_P A THR 79 A THR 79 1 4 14 A ARG 83 A ARG 83 HELX_P A GLN 90 A GLN 90 1 5 8 A ASP 91 A ASP 91 HELX_P A THR 101 A THR 101 1 6 11 A GLY 107 A GLY 107 HELX_P A GLU 117 A GLU 117 1 7 11 A THR 121 A THR 121 HELX_P A LYS 127 A LYS 127 1 8 7 A ASN 128 A ASN 128 HELX_P A LEU 132 A LEU 132 5 9 5 A ASN 133 A ASN 133 HELX_P A TYR 142 A TYR 142 1 10 10 A TYR 142 A TYR 142 HELX_P A LYS 148 A LYS 148 1 11 7 A ARG 152 A ARG 152 HELX_P A ASP 170 A ASP 170 1 12 19 A CYS 178 A CYS 178 HELX_P A ARG 183 A ARG 183 1 13 6 A GLN 207 A GLN 207 HELX_P A VAL 221 A VAL 221 1 14 15 A PRO 261 A PRO 261 HELX_P A ASP 263 A ASP 263 5 15 3 A GLN 264 A GLN 264 HELX_P A THR 273 A THR 273 1 16 10 A SER 275 A SER 275 HELX_P A HIS 285 A HIS 285 1 17 11 A SER 315 A SER 315 HELX_P A ILE 323 A ILE 323 1 18 9 B ASN 12 B ASN 12 HELX_P B VAL 29 B VAL 29 1 19 18 B ALA 32 B ALA 32 HELX_P B TYR 49 B TYR 49 1 20 18 B SER 55 B SER 55 HELX_P B LYS 61 B LYS 61 1 21 7 B GLY 66 B GLY 66 HELX_P B GLY 80 B GLY 80 1 22 15 B LEU 82 B LEU 82 HELX_P B ARG 89 B ARG 89 1 23 8 B ASP 91 B ASP 91 HELX_P B THR 101 B THR 101 1 24 11 B PRO 108 B PRO 108 HELX_P B ASP 116 B ASP 116 1 25 9 B THR 121 B THR 121 HELX_P B ASN 128 B ASN 128 1 26 8 B GLU 129 B GLU 129 HELX_P B LEU 132 B LEU 132 5 27 4 B ASN 133 B ASN 133 HELX_P B TYR 142 B TYR 142 1 28 10 B TYR 142 B TYR 142 HELX_P B LYS 148 B LYS 148 1 29 7 B ARG 152 B ARG 152 HELX_P B ASP 170 B ASP 170 1 30 19 B PRO 208 B PRO 208 HELX_P B VAL 221 B VAL 221 1 31 14 B GLN 264 B GLN 264 HELX_P B GLY 274 B GLY 274 1 32 11 B SER 275 B SER 275 HELX_P B ALA 286 B ALA 286 1 33 12 B SER 315 B SER 315 HELX_P B ILE 323 B ILE 323 1 34 9 B GLU 329 B GLU 329 HELX_P B ARG 333 B ARG 333 5 35 5 metalc 2.317 A THR 101 A O THR 101 1_555 A NA 339 J NA NA 1_555 metalc 2.292 A VAL 103 A O VAL 103 1_555 A NA 339 J NA NA 1_555 metalc 2.358 A ILE 106 A O ILE 106 1_555 A NA 339 J NA NA 1_555 metalc 2.264 A ASP 190 A OD1 ASP 190 1_555 A NA 338 I NA NA 1_555 metalc 2.647 A ASP 190 A O ASP 190 1_555 A NA 338 I NA NA 1_555 metalc 2.035 A ASP 192 A OD2 ASP 192 1_555 A NA 338 I NA NA 1_555 metalc 2.004 A D3T 336 G O1B D3T 1_555 A NA 338 I NA NA 1_555 metalc 2.151 A D3T 336 G O1A D3T 1_555 A NA 338 I NA NA 1_555 metalc 2.209 A NA 339 J NA NA 1_555 P DA 6 C OP2 DA 6 1_555 metalc 2.146 B THR 101 B O THR 101 1_555 B NA 338 N NA NA 1_555 metalc 2.568 B VAL 103 B O VAL 103 1_555 B NA 338 N NA NA 1_555 metalc 2.890 B ILE 106 B O ILE 106 1_555 B NA 338 N NA NA 1_555 metalc 2.703 B ASP 192 B OD2 ASP 192 1_555 B NA 337 M NA NA 1_555 metalc 2.548 B D3T 336 L O1A D3T 1_555 B NA 337 M NA NA 1_555 metalc 3.024 B D3T 336 L O1B D3T 1_555 B NA 337 M NA NA 1_555 metalc 3.125 B D3T 336 L O3B D3T 1_555 B NA 337 M NA NA 1_555 metalc 2.410 B NA 338 N NA NA 1_555 D DA 6 E OP2 DA 6 1_555 hydrog WATSON-CRICK P DT 2 C N3 DT 2 1_555 T DA 9 D N1 DA 7 1_555 hydrog WATSON-CRICK P DT 2 C O4 DT 2 1_555 T DA 9 D N6 DA 7 1_555 hydrog WATSON-CRICK P DG 3 C N1 DG 3 1_555 T DC 8 D N3 DC 6 1_555 hydrog WATSON-CRICK P DG 3 C N2 DG 3 1_555 T DC 8 D O2 DC 6 1_555 hydrog WATSON-CRICK P DG 3 C O6 DG 3 1_555 T DC 8 D N4 DC 6 1_555 hydrog WATSON-CRICK P DT 4 C N3 DT 4 1_555 T DA 7 D N1 DA 5 1_555 hydrog WATSON-CRICK P DT 4 C O4 DT 4 1_555 T DA 7 D N6 DA 5 1_555 hydrog WATSON-CRICK P DG 5 C N1 DG 5 1_555 T DC 6 D N3 DC 4 1_555 hydrog WATSON-CRICK P DG 5 C N2 DG 5 1_555 T DC 6 D O2 DC 4 1_555 hydrog WATSON-CRICK P DG 5 C O6 DG 5 1_555 T DC 6 D N4 DC 4 1_555 hydrog WATSON-CRICK P DA 6 C N1 DA 6 1_555 T DT 5 D N3 DT 3 1_555 hydrog WATSON-CRICK P DA 6 C N6 DA 6 1_555 T DT 5 D O4 DT 3 1_555 hydrog DG-DC PAIR P DG 7 C N2 DG 7 1_555 T DC 4 D O2 DC 2 1_555 hydrog WATSON-CRICK D DT 2 E N3 DT 2 1_555 E DA 9 F N1 DA 7 1_555 hydrog WATSON-CRICK D DT 2 E O4 DT 2 1_555 E DA 9 F N6 DA 7 1_555 hydrog WATSON-CRICK D DG 3 E N1 DG 3 1_555 E DC 8 F N3 DC 6 1_555 hydrog WATSON-CRICK D DG 3 E N2 DG 3 1_555 E DC 8 F O2 DC 6 1_555 hydrog WATSON-CRICK D DG 3 E O6 DG 3 1_555 E DC 8 F N4 DC 6 1_555 hydrog WATSON-CRICK D DT 4 E N3 DT 4 1_555 E DA 7 F N1 DA 5 1_555 hydrog WATSON-CRICK D DT 4 E O4 DT 4 1_555 E DA 7 F N6 DA 5 1_555 hydrog WATSON-CRICK D DG 5 E N1 DG 5 1_555 E DC 6 F N3 DC 4 1_555 hydrog WATSON-CRICK D DG 5 E N2 DG 5 1_555 E DC 6 F O2 DC 4 1_555 hydrog WATSON-CRICK D DG 5 E O6 DG 5 1_555 E DC 6 F N4 DC 4 1_555 hydrog WATSON-CRICK D DA 6 E N1 DA 6 1_555 E DT 5 F N3 DT 3 1_555 hydrog WATSON-CRICK D DA 6 E N6 DA 6 1_555 E DT 5 F O4 DT 3 1_555 hydrog DG-DC PAIR D DG 7 E N1 DG 7 1_555 E DC 4 F N3 DC 2 1_555 hydrog DG-DT MISPAIR D DG 7 E N2 DG 7 1_555 E DT 5 F O2 DT 3 1_555 TRANSFERASE, LYASE/DNA pol beta, repair polymerase, BER, TRANSFERASE, LYASE-DNA complex A GLY 274 A GLY 274 1 A SER 275 A SER 275 0.49 DPOLB_RAT UNP 1 1 P06766 MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQD IVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQ LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIF DYIQWRYREPKDRSE 3UXP PDB 2 3UXP 3UXP PDB 3 3UXP 1 335 3UXP 1 335 P06766 A 1 1 335 1 335 3UXP 1 335 P06766 B 1 1 335 1 7 3UXP 1 7 3UXP P 2 1 7 1 7 3UXP 1 7 3UXP D 2 1 7 3 11 3UXP 3 11 3UXP T 3 1 9 3 11 3UXP 3 11 3UXP E 3 1 9 1 ILE engineered mutation GLN 260 3UXP A P06766 UNP 260 260 2 ILE engineered mutation GLN 260 3UXP B P06766 UNP 260 260 2 5 2 5 2 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A ILE 150 A ILE 150 A PRO 151 A PRO 151 A SER 187 A SER 187 A SER 188 A SER 188 A ILE 174 A ILE 174 A VAL 177 A VAL 177 A MET 191 A MET 191 A THR 196 A THR 196 A ARG 253 A ARG 253 A GLN 260 A GLN 260 A LYS 234 A LYS 234 A CYS 239 A CYS 239 A ILE 224 A ILE 224 A LYS 230 A LYS 230 B ILE 150 B ILE 150 B PRO 151 B PRO 151 B SER 187 B SER 187 B SER 188 B SER 188 B ILE 174 B ILE 174 B VAL 177 B VAL 177 B ASP 192 B ASP 192 B THR 196 B THR 196 B ARG 253 B ARG 253 B LEU 259 B LEU 259 B LYS 234 B LYS 234 B CYS 239 B CYS 239 B ILE 224 B ILE 224 B LYS 230 B LYS 230 B PHE 291 B PHE 291 B ILE 293 B ILE 293 B ILE 298 B ILE 298 B PRO 300 B PRO 300 BINDING SITE FOR RESIDUE D3T A 336 A D3T 336 Software 17 BINDING SITE FOR RESIDUE NA A 337 A NA 337 Software 5 BINDING SITE FOR RESIDUE NA A 338 A NA 338 Software 3 BINDING SITE FOR RESIDUE NA A 339 A NA 339 Software 5 BINDING SITE FOR RESIDUE NA A 340 A NA 340 Software 5 BINDING SITE FOR RESIDUE D3T B 336 B D3T 336 Software 12 BINDING SITE FOR RESIDUE NA B 337 B NA 337 Software 3 BINDING SITE FOR RESIDUE NA B 338 B NA 338 Software 4 BINDING SITE FOR RESIDUE NA B 339 B NA 339 Software 4 A ARG 149 A ARG 149 17 1_555 A GLY 179 A GLY 179 17 1_555 A SER 180 A SER 180 17 1_555 A ARG 183 A ARG 183 17 1_555 A SER 188 A SER 188 17 1_555 A GLY 189 A GLY 189 17 1_555 A ASP 190 A ASP 190 17 1_555 A ASP 192 A ASP 192 17 1_555 A TYR 271 A TYR 271 17 1_555 A PHE 272 A PHE 272 17 1_555 A ASP 276 A ASP 276 17 1_555 A ASN 279 A ASN 279 17 1_555 A NA 337 H NA 17 1_555 A NA 338 I NA 17 1_555 A HOH 342 P HOH 17 1_555 P DG 7 C DG 7 17 1_555 T DA 3 D DA 1 17 1_555 A ASP 190 A ASP 190 5 1_555 A ASP 192 A ASP 192 5 1_555 A ASP 256 A ASP 256 5 1_555 A D3T 336 G D3T 5 1_555 P DG 7 C DG 7 5 1_555 A ASP 190 A ASP 190 3 1_555 A ASP 192 A ASP 192 3 1_555 A D3T 336 G D3T 3 1_555 A THR 101 A THR 101 5 1_555 A VAL 103 A VAL 103 5 1_555 A THR 104 A THR 104 5 1_555 A ILE 106 A ILE 106 5 1_555 P DA 6 C DA 6 5 1_555 A ARG 283 A ARG 283 5 1_555 A THR 292 A THR 292 5 1_555 A ILE 293 A ILE 293 5 1_555 T DA 3 D DA 1 5 1_555 T DC 4 D DC 2 5 1_555 B ARG 149 B ARG 149 12 1_555 B GLY 179 B GLY 179 12 1_555 B SER 180 B SER 180 12 1_555 B SER 188 B SER 188 12 1_555 B GLY 189 B GLY 189 12 1_555 B ASP 190 B ASP 190 12 1_555 B ASP 192 B ASP 192 12 1_555 B TYR 271 B TYR 271 12 1_555 B ASN 279 B ASN 279 12 1_555 B NA 337 M NA 12 1_555 D DG 7 E DG 7 12 1_555 E DA 3 F DA 1 12 1_555 B ASP 190 B ASP 190 3 1_555 B ASP 192 B ASP 192 3 1_555 B D3T 336 L D3T 3 1_555 B THR 101 B THR 101 4 1_555 B VAL 103 B VAL 103 4 1_555 B ILE 106 B ILE 106 4 1_555 D DA 6 E DA 6 4 1_555 B ARG 283 B ARG 283 4 1_555 B PHE 291 B PHE 291 4 1_555 B ILE 293 B ILE 293 4 1_555 E DC 4 F DC 2 4 1_555 4 P 1 21 1