0.019470 0.011241 0.000000 0.000000 0.022482 0.000000 0.000000 0.000000 0.019331 0.00000 0.00000 0.00000 Collie, G.W. Neidle, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 51.360 51.360 51.730 C44 H66 N10 O6 831.058 4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}-2,7-bis[3-(morpholin-4-yl)propyl]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer N 1 N C N 2 N C N 3 N O N 4 N O N 5 N O N 6 N O Y 7 N C Y 8 N C N 9 N C N 10 N C N 11 N C N 12 N C N 13 N C N 14 N C N 15 N C N 16 N C N 17 N C N 18 N C N 19 N C N 20 N C N 21 N C N 22 N C N 23 N C N 24 N C N 25 N C N 26 N C N 27 N C N 28 N C N 29 N C N 30 N C N 31 N C N 32 N C N 33 N C N 34 N C N 35 N C N 36 N C N 37 N N N 38 N N Y 39 N C Y 40 N C N 41 N C N 42 N C N 43 N C N 44 N C Y 45 N C Y 46 N C Y 47 N C Y 48 N C Y 49 N C Y 50 N C N 51 N N N 52 N N N 53 N O N 54 N O N 55 N N N 56 N N N 57 N N N 58 N N N 59 N N N 60 N N N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N O N 128 N P N 129 N O N 130 N O N 131 N O N 132 N C N 133 R C N 134 N O N 135 S C N 136 N O N 137 N C N 138 R C Y 139 N N Y 140 N C Y 141 N N Y 142 N C Y 143 N C N 144 N N Y 145 N N Y 146 N C Y 147 N N Y 148 N C N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N O N 164 N P N 165 N O N 166 N O N 167 N O N 168 N C N 169 R C N 170 N O N 171 S C N 172 N O N 173 N C N 174 R C Y 175 N N Y 176 N C Y 177 N N Y 178 N C N 179 N C N 180 N O N 181 N N N 182 N C N 183 N N N 184 N N Y 185 N C N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N O N 201 N P N 202 N O N 203 N O N 204 N O N 205 N C N 206 R C N 207 N O N 208 S C N 209 N O N 210 N C N 211 R C N 212 N N N 213 N C N 214 N O N 215 N N N 216 N C N 217 N O N 218 N C N 219 N C N 220 N C N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N O N 237 N H N 238 N H N 239 N K N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N doub N 10 N doub N 11 N doub N 12 N doub Y 13 N doub Y 14 N sing N 15 N sing Y 16 N doub Y 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing Y 119 N doub Y 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing Y 129 N doub Y 130 N sing Y 131 N sing Y 132 N doub Y 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing Y 157 N sing Y 158 N sing Y 159 N doub N 160 N sing Y 161 N sing Y 162 N sing Y 163 N doub N 164 N sing Y 165 N doub N 166 N sing N 167 N sing Y 168 N sing Y 169 N doub N 170 N sing Y 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing Y 195 N sing Y 196 N sing Y 197 N doub N 198 N sing Y 199 N sing N 200 N sing Y 201 N doub N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 56 2959 2974 10.1021/jm301899y 23514618 Structure-based design and evaluation of naphthalene diimide g-quadruplex ligands as telomere targeting agents in pancreatic cancer cells. 2013 10.2210/pdb3uyh/pdb pdb_00003uyh 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-12-05 ADSC QUANTUM 315r SI 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 I04 Diamond 0.9795 SYNCHROTRON DIAMOND BEAMLINE I04 6983.497 human telomeric DNA sequence 1 syn polymer 39.098 POTASSIUM ION 3 syn non-polymer 831.058 4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}-2,7-bis[3-(morpholin-4-yl)propyl]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone 1 syn non-polymer 18.015 water 51 nat water no no (DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG) (DG)(DG) AGGGTTAGGGTTAGGGTTAGGG A polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n 1 2.83 56.60 VAPOR DIFFUSION, HANGING DROP 6.5 15% PEG400, 100 mM sodium chloride, 100 mM lithium chloride, 100 mM potassium bromide, 50 mM sodium cacodylate (pH 6.5)., VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 -0.464 3 6 A 8 A 14 -92.257 A_DG8:DG14_A 1 -10.143 1.439 0.256 3.453 0.713 3 6 A 9 A 15 -94.314 A_DG9:DG15_A 2 -5.350 1.601 -0.033 3.273 6.554 3 6 A 10 A 16 -89.862 A_DG10:DG16_A 3 -11.895 1.619 0.107 3.458 -7.980 3 6 A 4 A 22 87.977 A_DG4:DG22_A 4 7.859 -1.838 -0.054 -3.398 -4.393 3 6 A 3 A 21 92.758 A_DG3:DG21_A 5 0.412 -1.554 0.456 -3.386 1.469 3 6 A 2 A 20 88.051 A_DG2:DG20_A 6 -3.571 -1.589 0.346 -3.892 3.345 32.875 A A 8 9 -1.184 A A 14 15 3.337 -0.670 -0.537 -0.828 AA_DG8DG9:DG15DG14_AA 1 0.461 -0.815 32.865 -1.347 1.030 2.798 26.001 A A 9 10 18.964 A A 15 16 3.173 8.383 -0.687 -0.580 AA_DG9DG10:DG16DG15_AA 2 0.958 -2.167 24.616 -3.453 1.774 0.351 -179.629 A A 10 4 4.555 A A 16 22 0.351 -9.110 1.619 3.479 AA_DG10DG4:DG22DG16_AA 3 12.305 6.153 -179.625 -1.739 0.810 -2.969 -26.108 A A 4 3 16.165 A A 22 21 -3.309 -7.209 0.562 0.705 AA_DG4DG3:DG21DG22_AA 4 -1.022 -2.293 -25.089 -3.485 1.517 -3.213 -34.103 A A 3 2 3.037 A A 21 20 -3.267 -1.779 0.135 0.740 AA_DG3DG2:DG20DG21_AA 5 -1.858 -3.171 -34.009 -1.542 0.523 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Database references Refinement description Data collection Database references Derived calculations Refinement description 1 0 2013-01-02 1 1 2013-04-03 1 2 2013-04-24 1 3 2017-11-08 1 4 2023-09-13 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Same G-quadruplex bound by a similar naphthalene diimide-based ligand. Same G-quadruplex bound by a similar naphthalene diimide-based ligand. 12-mer G-quadruplex bound by a naphthalene diimide-based ligand. 23-mer G-quadruplex bound by a naphthalene diimide-based ligand. RCSB Y RCSB 2011-12-06 REL REL K POTASSIUM ION 0DX 4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}-2,7-bis[3-(morpholin-4-yl)propyl]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone HOH water DNA synthesised by standard phosphoramidite chemistry. 32630 Synthetic DNA sample 3SC8 PDB ENTRY 3SC8 PDB experimental model K 1 2 K K 101 A K 2 2 K K 102 A K 3 2 K K 103 A 0DX 23 3 0DX 0DX 104 A HOH 1 4 HOH HOH 201 A HOH 2 4 HOH HOH 202 A HOH 3 4 HOH HOH 203 A HOH 4 4 HOH HOH 204 A HOH 5 4 HOH HOH 205 A HOH 6 4 HOH HOH 206 A HOH 7 4 HOH HOH 207 A HOH 8 4 HOH HOH 208 A HOH 9 4 HOH HOH 209 A HOH 10 4 HOH HOH 210 A HOH 11 4 HOH HOH 211 A HOH 12 4 HOH HOH 212 A HOH 13 4 HOH HOH 213 A HOH 14 4 HOH HOH 214 A HOH 15 4 HOH HOH 215 A HOH 16 4 HOH HOH 216 A HOH 17 4 HOH HOH 217 A HOH 18 4 HOH HOH 218 A HOH 19 4 HOH HOH 219 A HOH 20 4 HOH HOH 220 A HOH 21 4 HOH HOH 221 A HOH 22 4 HOH HOH 222 A HOH 23 4 HOH HOH 223 A HOH 24 4 HOH HOH 224 A HOH 25 4 HOH HOH 225 A HOH 26 4 HOH HOH 226 A HOH 27 4 HOH HOH 227 A HOH 28 4 HOH HOH 228 A HOH 29 4 HOH HOH 229 A HOH 30 4 HOH HOH 230 A HOH 31 4 HOH HOH 231 A HOH 32 4 HOH HOH 232 A HOH 33 4 HOH HOH 233 A HOH 34 4 HOH HOH 234 A HOH 35 4 HOH HOH 235 A HOH 36 4 HOH HOH 236 A HOH 37 4 HOH HOH 237 A HOH 38 4 HOH HOH 238 A HOH 39 4 HOH HOH 239 A HOH 40 4 HOH HOH 240 A HOH 41 4 HOH HOH 241 A HOH 42 4 HOH HOH 242 A HOH 43 4 HOH HOH 243 A HOH 44 4 HOH HOH 244 A HOH 45 4 HOH HOH 245 A HOH 46 4 HOH HOH 246 A HOH 47 4 HOH HOH 247 A HOH 48 4 HOH HOH 248 A HOH 49 4 HOH HOH 249 A HOH 50 4 HOH HOH 250 A HOH 51 4 HOH HOH 251 A n 1 1 A DG 2 n 2 DG 2 A DG 3 n 3 DG 3 A DG 4 n 4 DG 4 A DT 5 n 5 DT 5 A DT 6 n 6 DT 6 A DA 7 n 7 DA 7 A DG 8 n 8 DG 8 A DG 9 n 9 DG 9 A DG 10 n 10 DG 10 A DT 11 n 11 DT 11 A DT 12 n 12 DT 12 A DA 13 n 13 DA 13 A DG 14 n 14 DG 14 A DG 15 n 15 DG 15 A DG 16 n 16 DG 16 A DT 17 n 17 DT 17 A DT 18 n 18 DT 18 A DA 19 n 19 DA 19 A DG 20 n 20 DG 20 A DG 21 n 21 DG 21 A DG 22 n 22 DG 22 A author_and_software_defined_assembly PISA 1 monomeric A DG 2 A O6 DG 2 1_555 A K 102 C K K 1_555 A DG 3 A O6 DG 3 1_555 73.0 A DG 2 A O6 DG 2 1_555 A K 102 C K K 1_555 A DG 8 A O6 DG 8 1_555 70.0 A DG 3 A O6 DG 3 1_555 A K 102 C K K 1_555 A DG 8 A O6 DG 8 1_555 89.5 A DG 2 A O6 DG 2 1_555 A K 102 C K K 1_555 A DG 9 A O6 DG 9 1_555 130.3 A DG 3 A O6 DG 3 1_555 A K 102 C K K 1_555 A DG 9 A O6 DG 9 1_555 71.4 A DG 8 A O6 DG 8 1_555 A K 102 C K K 1_555 A DG 9 A O6 DG 9 1_555 76.1 A DG 2 A O6 DG 2 1_555 A K 102 C K K 1_555 A DG 14 A O6 DG 14 1_555 107.9 A DG 3 A O6 DG 3 1_555 A K 102 C K K 1_555 A DG 14 A O6 DG 14 1_555 154.7 A DG 8 A O6 DG 8 1_555 A K 102 C K K 1_555 A DG 14 A O6 DG 14 1_555 68.0 A DG 9 A O6 DG 9 1_555 A K 102 C K K 1_555 A DG 14 A O6 DG 14 1_555 91.1 A DG 2 A O6 DG 2 1_555 A K 102 C K K 1_555 A DG 15 A O6 DG 15 1_555 156.7 A DG 3 A O6 DG 3 1_555 A K 102 C K K 1_555 A DG 15 A O6 DG 15 1_555 111.0 A DG 8 A O6 DG 8 1_555 A K 102 C K K 1_555 A DG 15 A O6 DG 15 1_555 131.7 A DG 9 A O6 DG 9 1_555 A K 102 C K K 1_555 A DG 15 A O6 DG 15 1_555 70.5 A DG 14 A O6 DG 14 1_555 A K 102 C K K 1_555 A DG 15 A O6 DG 15 1_555 78.5 A DG 2 A O6 DG 2 1_555 A K 102 C K K 1_555 A DG 20 A O6 DG 20 1_555 71.9 A DG 3 A O6 DG 3 1_555 A K 102 C K K 1_555 A DG 20 A O6 DG 20 1_555 132.2 A DG 8 A O6 DG 8 1_555 A K 102 C K K 1_555 A DG 20 A O6 DG 20 1_555 107.5 A DG 9 A O6 DG 9 1_555 A K 102 C K K 1_555 A DG 20 A O6 DG 20 1_555 155.1 A DG 14 A O6 DG 14 1_555 A K 102 C K K 1_555 A DG 20 A O6 DG 20 1_555 68.7 A DG 15 A O6 DG 15 1_555 A K 102 C K K 1_555 A DG 20 A O6 DG 20 1_555 90.7 A DG 2 A O6 DG 2 1_555 A K 102 C K K 1_555 A DG 21 A O6 DG 21 1_555 88.0 A DG 3 A O6 DG 3 1_555 A K 102 C K K 1_555 A DG 21 A O6 DG 21 1_555 71.2 A DG 8 A O6 DG 8 1_555 A K 102 C K K 1_555 A DG 21 A O6 DG 21 1_555 154.4 A DG 9 A O6 DG 9 1_555 A K 102 C K K 1_555 A DG 21 A O6 DG 21 1_555 111.6 A DG 14 A O6 DG 14 1_555 A K 102 C K K 1_555 A DG 21 A O6 DG 21 1_555 133.6 A DG 15 A O6 DG 15 1_555 A K 102 C K K 1_555 A DG 21 A O6 DG 21 1_555 72.6 A DG 20 A O6 DG 20 1_555 A K 102 C K K 1_555 A DG 21 A O6 DG 21 1_555 76.1 A DG 2 A O6 DG 2 1_555 A K 103 D K K 1_555 A DG 8 A O6 DG 8 1_555 68.1 A DG 2 A O6 DG 2 1_555 A K 103 D K K 1_555 A DG 14 A O6 DG 14 1_555 108.4 A DG 8 A O6 DG 8 1_555 A K 103 D K K 1_555 A DG 14 A O6 DG 14 1_555 70.0 A DG 2 A O6 DG 2 1_555 A K 103 D K K 1_555 A DG 20 A O6 DG 20 1_555 70.1 A DG 8 A O6 DG 8 1_555 A K 103 D K K 1_555 A DG 20 A O6 DG 20 1_555 107.3 A DG 14 A O6 DG 14 1_555 A K 103 D K K 1_555 A DG 20 A O6 DG 20 1_555 70.7 A DG 3 A O6 DG 3 1_555 A K 101 B K K 1_555 A DG 4 A O6 DG 4 1_555 72.7 A DG 3 A O6 DG 3 1_555 A K 101 B K K 1_555 A DG 9 A O6 DG 9 1_555 65.5 A DG 4 A O6 DG 4 1_555 A K 101 B K K 1_555 A DG 9 A O6 DG 9 1_555 90.7 A DG 3 A O6 DG 3 1_555 A K 101 B K K 1_555 A DG 10 A O6 DG 10 1_555 125.5 A DG 4 A O6 DG 4 1_555 A K 101 B K K 1_555 A DG 10 A O6 DG 10 1_555 75.6 A DG 9 A O6 DG 9 1_555 A K 101 B K K 1_555 A DG 10 A O6 DG 10 1_555 71.9 A DG 3 A O6 DG 3 1_555 A K 101 B K K 1_555 A DG 15 A O6 DG 15 1_555 102.7 A DG 4 A O6 DG 4 1_555 A K 101 B K K 1_555 A DG 15 A O6 DG 15 1_555 154.3 A DG 9 A O6 DG 9 1_555 A K 101 B K K 1_555 A DG 15 A O6 DG 15 1_555 65.2 A DG 10 A O6 DG 10 1_555 A K 101 B K K 1_555 A DG 15 A O6 DG 15 1_555 87.9 A DG 3 A O6 DG 3 1_555 A K 101 B K K 1_555 A DG 16 A O6 DG 16 1_555 154.1 A DG 4 A O6 DG 4 1_555 A K 101 B K K 1_555 A DG 16 A O6 DG 16 1_555 128.5 A DG 9 A O6 DG 9 1_555 A K 101 B K K 1_555 A DG 16 A O6 DG 16 1_555 121.7 A DG 10 A O6 DG 10 1_555 A K 101 B K K 1_555 A DG 16 A O6 DG 16 1_555 78.4 A DG 15 A O6 DG 15 1_555 A K 101 B K K 1_555 A DG 16 A O6 DG 16 1_555 64.8 A DG 3 A O6 DG 3 1_555 A K 101 B K K 1_555 A DG 21 A O6 DG 21 1_555 66.6 A DG 4 A O6 DG 4 1_555 A K 101 B K K 1_555 A DG 21 A O6 DG 21 1_555 128.1 A DG 9 A O6 DG 9 1_555 A K 101 B K K 1_555 A DG 21 A O6 DG 21 1_555 100.1 A DG 10 A O6 DG 10 1_555 A K 101 B K K 1_555 A DG 21 A O6 DG 21 1_555 155.8 A DG 15 A O6 DG 15 1_555 A K 101 B K K 1_555 A DG 21 A O6 DG 21 1_555 68.3 A DG 16 A O6 DG 16 1_555 A K 101 B K K 1_555 A DG 21 A O6 DG 21 1_555 87.5 A DG 3 A O6 DG 3 1_555 A K 101 B K K 1_555 A DG 22 A O6 DG 22 1_555 92.5 A DG 4 A O6 DG 4 1_555 A K 101 B K K 1_555 A DG 22 A O6 DG 22 1_555 79.1 A DG 9 A O6 DG 9 1_555 A K 101 B K K 1_555 A DG 22 A O6 DG 22 1_555 157.8 A DG 10 A O6 DG 10 1_555 A K 101 B K K 1_555 A DG 22 A O6 DG 22 1_555 123.3 A DG 15 A O6 DG 15 1_555 A K 101 B K K 1_555 A DG 22 A O6 DG 22 1_555 126.6 A DG 16 A O6 DG 16 1_555 A K 101 B K K 1_555 A DG 22 A O6 DG 22 1_555 79.4 A DG 21 A O6 DG 21 1_555 A K 101 B K K 1_555 A DG 22 A O6 DG 22 1_555 72.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A K 103 D K 1 A DA 1 A DA 1 1 Y 1 15.89 1.20 119.70 135.59 A A A C3' O3' P DG DG DT 4 4 5 A Y 1 -12.68 1.20 119.70 107.02 A A A C3' O3' P DG DG DT 4 4 5 B Y 1 8.06 1.20 119.70 127.76 A A A C3' O3' P DT DT DT 11 11 12 Y 1 -6.55 1.00 110.10 103.55 A A A C1' O4' C4' DA DA DA 13 13 13 N 1 -9.96 1.20 119.70 109.74 A A A C3' O3' P DG DG DG 15 15 16 Y 40.963 -0.03 -0.01 0.00 -0.03 0.00 0.04 0.948 0.920 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT 0.27496 0.23123 0.23309 1.95 12.00 271 2807 5693 4.5 98.74 4.218 0.118 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.192 0.175 0.80 0.80 1.20 PDB ENTRY 3SC8 MAXIMUM LIKELIHOOD MASK 1.95 12.00 51 561 63 447 0 0.007 0.012 593 2.008 1.512 911 0.079 0.200 66 0.013 0.020 271 0.407 0.423 1.999 23 361 20 100.00 1.84 22.36 3UYH 7126 2 0.06 1 21.00 10.5 99.6 0.8 1.84 1.88 2.9 1 10.7 100 data collection CrysalisPro Pro phasing PHASER refinement REFMAC 5.6.0117 data scaling xia2 data reduction xia2 data scaling SCALA Crystal structure of an intramolecular human telomeric DNA G-quadruplex bound by the naphthalene diimide compound, MM41 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N metalc 2.767 A DG 2 A O6 DG 2 1_555 A K 102 C K K 1_555 metalc 2.891 A DG 2 A O6 DG 2 1_555 A K 103 D K K 1_555 metalc 2.893 A DG 3 A O6 DG 3 1_555 A K 101 B K K 1_555 metalc 2.728 A DG 3 A O6 DG 3 1_555 A K 102 C K K 1_555 metalc 2.679 A DG 4 A O6 DG 4 1_555 A K 101 B K K 1_555 metalc 2.784 A DG 8 A O6 DG 8 1_555 A K 102 C K K 1_555 metalc 2.787 A DG 8 A O6 DG 8 1_555 A K 103 D K K 1_555 metalc 2.961 A DG 9 A O6 DG 9 1_555 A K 101 B K K 1_555 metalc 2.695 A DG 9 A O6 DG 9 1_555 A K 102 C K K 1_555 metalc 2.640 A DG 10 A O6 DG 10 1_555 A K 101 B K K 1_555 metalc 2.891 A DG 14 A O6 DG 14 1_555 A K 102 C K K 1_555 metalc 2.750 A DG 14 A O6 DG 14 1_555 A K 103 D K K 1_555 metalc 3.031 A DG 15 A O6 DG 15 1_555 A K 101 B K K 1_555 metalc 2.889 A DG 15 A O6 DG 15 1_555 A K 102 C K K 1_555 metalc 2.633 A DG 16 A O6 DG 16 1_555 A K 101 B K K 1_555 metalc 2.817 A DG 20 A O6 DG 20 1_555 A K 102 C K K 1_555 metalc 2.819 A DG 20 A O6 DG 20 1_555 A K 103 D K K 1_555 metalc 2.953 A DG 21 A O6 DG 21 1_555 A K 101 B K K 1_555 metalc 2.785 A DG 21 A O6 DG 21 1_555 A K 102 C K K 1_555 metalc 2.635 A DG 22 A O6 DG 22 1_555 A K 101 B K K 1_555 hydrog TYPE_6_PAIR A DG 2 A N1 DG 2 1_555 A DG 8 A O6 DG 8 1_555 hydrog TYPE_6_PAIR A DG 2 A N2 DG 2 1_555 A DG 8 A N7 DG 8 1_555 hydrog TYPE_6_PAIR A DG 2 A N7 DG 2 1_555 A DG 20 A N2 DG 20 1_555 hydrog TYPE_6_PAIR A DG 2 A O6 DG 2 1_555 A DG 20 A N1 DG 20 1_555 hydrog TYPE_6_PAIR A DG 3 A N1 DG 3 1_555 A DG 9 A O6 DG 9 1_555 hydrog TYPE_6_PAIR A DG 3 A N2 DG 3 1_555 A DG 9 A N7 DG 9 1_555 hydrog TYPE_6_PAIR A DG 3 A N7 DG 3 1_555 A DG 21 A N2 DG 21 1_555 hydrog TYPE_6_PAIR A DG 3 A O6 DG 3 1_555 A DG 21 A N1 DG 21 1_555 hydrog TYPE_6_PAIR A DG 4 A N1 DG 4 1_555 A DG 10 A O6 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N2 DG 4 1_555 A DG 10 A N7 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N7 DG 4 1_555 A DG 22 A N2 DG 22 1_555 hydrog TYPE_6_PAIR A DG 4 A O6 DG 4 1_555 A DG 22 A N1 DG 22 1_555 hydrog TYPE_6_PAIR A DG 8 A N1 DG 8 1_555 A DG 14 A O6 DG 14 1_555 hydrog TYPE_6_PAIR A DG 8 A N2 DG 8 1_555 A DG 14 A N7 DG 14 1_555 hydrog TYPE_6_PAIR A DG 9 A N1 DG 9 1_555 A DG 15 A O6 DG 15 1_555 hydrog TYPE_6_PAIR A DG 9 A N2 DG 9 1_555 A DG 15 A N7 DG 15 1_555 hydrog TYPE_6_PAIR A DG 10 A N1 DG 10 1_555 A DG 16 A O6 DG 16 1_555 hydrog TYPE_6_PAIR A DG 10 A N2 DG 10 1_555 A DG 16 A N7 DG 16 1_555 hydrog TYPE_6_PAIR A DG 14 A N1 DG 14 1_555 A DG 20 A O6 DG 20 1_555 hydrog TYPE_6_PAIR A DG 14 A N2 DG 14 1_555 A DG 20 A N7 DG 20 1_555 hydrog TYPE_6_PAIR A DG 15 A N1 DG 15 1_555 A DG 21 A O6 DG 21 1_555 hydrog TYPE_6_PAIR A DG 15 A N2 DG 15 1_555 A DG 21 A N7 DG 21 1_555 hydrog TYPE_6_PAIR A DG 16 A N1 DG 16 1_555 A DG 22 A O6 DG 22 1_555 hydrog TYPE_6_PAIR A DG 16 A N2 DG 16 1_555 A DG 22 A N7 DG 22 1_555 DNA intramolecular, ligand-complex, G-quadruplex, telomere, DNA 3UYH PDB 1 1 3UYH AGGGTTAGGGTTAGGGTTAGGG 1 22 3UYH 1 22 3UYH A 1 1 22 BINDING SITE FOR RESIDUE K A 101 A K 101 Software 9 BINDING SITE FOR RESIDUE K A 102 A K 102 Software 11 BINDING SITE FOR RESIDUE K A 103 A K 103 Software 10 BINDING SITE FOR RESIDUE 0DX A 104 A 0DX 104 Software 16 A DG 3 A DG 3 9 1_555 A DG 4 A DG 4 9 1_555 A DG 9 A DG 9 9 1_555 A DG 10 A DG 10 9 1_555 A DG 15 A DG 15 9 1_555 A DG 16 A DG 16 9 1_555 A DG 21 A DG 21 9 1_555 A DG 22 A DG 22 9 1_555 A K 102 C K 9 1_555 A DG 2 A DG 2 11 1_555 A DG 3 A DG 3 11 1_555 A DG 8 A DG 8 11 1_555 A DG 9 A DG 9 11 1_555 A DG 14 A DG 14 11 1_555 A DG 15 A DG 15 11 1_555 A DG 20 A DG 20 11 1_555 A DG 21 A DG 21 11 1_555 A K 101 B K 11 1_555 A K 103 D K 11 4_555 A K 103 D K 11 1_555 A DG 2 A DG 2 10 4_555 A DG 2 A DG 2 10 1_555 A DG 8 A DG 8 10 1_555 A DG 8 A DG 8 10 4_555 A DG 14 A DG 14 10 4_555 A DG 14 A DG 14 10 1_555 A DG 20 A DG 20 10 1_555 A DG 20 A DG 20 10 4_555 A K 102 C K 10 1_555 A K 102 C K 10 4_555 A DG 4 A DG 4 16 1_555 A DT 5 A DT 5 16 1_555 A DT 6 A DT 6 16 3_544 A DG 10 A DG 10 16 1_555 A DT 11 A DT 11 16 1_555 A DT 12 A DT 12 16 5_544 A DA 13 A DA 13 16 5_544 A DG 16 A DG 16 16 1_555 A DG 22 A DG 22 16 1_555 A HOH 217 F HOH 16 1_555 A HOH 219 F HOH 16 1_555 A HOH 220 F HOH 16 1_555 A HOH 227 F HOH 16 1_555 A HOH 229 F HOH 16 1_555 A HOH 242 F HOH 16 1_555 A HOH 251 F HOH 16 1_555 152 P 31 2 1