0.039362
0.000000
0.000000
0.000000
0.023849
0.000000
0.000000
0.000000
0.014890
0.00000
0.00000
0.00000
Der, B.S.
Machius, M.
Miley, M.J.
Kuhlman, B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
25.405
41.931
67.159
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
134
375
385
10.1021/ja208015j
22092237
Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer.
2012
10.2210/pdb3v1b/pdb
pdb_00003v1b
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-11-11
MARMOSAIC 300 mm CCD
double crystal
SINGLE WAVELENGTH
M
x-ray
1
0.9794
1.0
23-ID-B
APS
0.9794
SYNCHROTRON
APS BEAMLINE 23-ID-B
5499.118
Computational design, MID1-apo2
2
man
polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
60
nat
water
Computational redesign of the biological sequence.
no
no
GSGSPLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQQSD
GSGSPLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQQSD
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
32630
ARTIFICIAL GENE
511693
Escherichia coli
BL21
plasmid
pQE-80L MBP fusion
1
1.63
24.36
VAPOR DIFFUSION, SITTING DROP
6.0
0.1 microliters protein (20 mg/ml, 100 mM ammonium acetate buffer) mixed with 0.1-0.2 microliters crystallization buffer (0.1 M MES, pH 6.0, 30% PEG 600, 5% PEG 1000, 10% glycerol), VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-01-11
1
1
2012-03-07
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
This deposition is a computational redesign of 1YZM.
RCSB
Y
RCSB
2011-12-09
REL
REL
GOL
GLYCEROL
HOH
water
1YZM
PDB ENTRY 1YZM
PDB
experimental model
GOL
1
2
GOL
GOL
47
B
HOH
3
3
HOH
HOH
47
A
HOH
7
3
HOH
HOH
48
A
HOH
49
3
HOH
HOH
49
A
HOH
10
3
HOH
HOH
50
A
HOH
14
3
HOH
HOH
51
A
HOH
15
3
HOH
HOH
52
A
HOH
53
3
HOH
HOH
53
A
HOH
16
3
HOH
HOH
54
A
HOH
17
3
HOH
HOH
55
A
HOH
20
3
HOH
HOH
56
A
HOH
21
3
HOH
HOH
57
A
HOH
58
3
HOH
HOH
58
A
HOH
23
3
HOH
HOH
59
A
HOH
31
3
HOH
HOH
60
A
HOH
33
3
HOH
HOH
61
A
HOH
34
3
HOH
HOH
62
A
HOH
36
3
HOH
HOH
63
A
HOH
39
3
HOH
HOH
64
A
HOH
42
3
HOH
HOH
65
A
HOH
46
3
HOH
HOH
66
A
HOH
72
3
HOH
HOH
72
A
HOH
79
3
HOH
HOH
79
A
HOH
84
3
HOH
HOH
84
A
HOH
48
3
HOH
HOH
48
B
HOH
1
3
HOH
HOH
49
B
HOH
2
3
HOH
HOH
50
B
HOH
4
3
HOH
HOH
51
B
HOH
52
3
HOH
HOH
52
B
HOH
5
3
HOH
HOH
53
B
HOH
6
3
HOH
HOH
54
B
HOH
8
3
HOH
HOH
55
B
HOH
9
3
HOH
HOH
56
B
HOH
57
3
HOH
HOH
57
B
HOH
11
3
HOH
HOH
58
B
HOH
12
3
HOH
HOH
59
B
HOH
60
3
HOH
HOH
60
B
HOH
13
3
HOH
HOH
61
B
HOH
18
3
HOH
HOH
62
B
HOH
19
3
HOH
HOH
63
B
HOH
64
3
HOH
HOH
64
B
HOH
65
3
HOH
HOH
65
B
HOH
66
3
HOH
HOH
66
B
HOH
67
3
HOH
HOH
67
B
HOH
22
3
HOH
HOH
68
B
HOH
24
3
HOH
HOH
69
B
HOH
25
3
HOH
HOH
70
B
HOH
26
3
HOH
HOH
71
B
HOH
27
3
HOH
HOH
72
B
HOH
73
3
HOH
HOH
73
B
HOH
28
3
HOH
HOH
74
B
HOH
29
3
HOH
HOH
75
B
HOH
30
3
HOH
HOH
76
B
HOH
32
3
HOH
HOH
77
B
HOH
78
3
HOH
HOH
78
B
HOH
38
3
HOH
HOH
79
B
HOH
40
3
HOH
HOH
80
B
HOH
41
3
HOH
HOH
81
B
HOH
43
3
HOH
HOH
82
B
HOH
44
3
HOH
HOH
83
B
HOH
47
3
HOH
HOH
84
B
n
1
-1
A
n
2
0
A
GLY
1
n
3
GLY
1
A
SER
2
n
4
SER
2
A
PRO
3
n
5
PRO
3
A
LEU
4
n
6
LEU
4
A
ALA
5
n
7
ALA
5
A
GLN
6
n
8
GLN
6
A
GLN
7
n
9
GLN
7
A
ILE
8
n
10
ILE
8
A
LYS
9
n
11
LYS
9
A
ASN
10
n
12
ASN
10
A
ILE
11
n
13
ILE
11
A
HIS
12
n
14
HIS
12
A
SER
13
n
15
SER
13
A
PHE
14
n
16
PHE
14
A
ILE
15
n
17
ILE
15
A
HIS
16
n
18
HIS
16
A
GLN
17
n
19
GLN
17
A
ALA
18
n
20
ALA
18
A
LYS
19
n
21
LYS
19
A
ALA
20
n
22
ALA
20
A
ALA
21
n
23
ALA
21
A
GLY
22
n
24
GLY
22
A
ARG
23
n
25
ARG
23
A
MET
24
n
26
MET
24
A
ASP
25
n
27
ASP
25
A
GLU
26
n
28
GLU
26
A
VAL
27
n
29
VAL
27
A
ARG
28
n
30
ARG
28
A
THR
29
n
31
THR
29
A
LEU
30
n
32
LEU
30
A
GLN
31
n
33
GLN
31
A
GLU
32
n
34
GLU
32
A
ASN
33
n
35
ASN
33
A
LEU
34
n
36
LEU
34
A
HIS
35
n
37
HIS
35
A
GLN
36
n
38
GLN
36
A
LEU
37
n
39
LEU
37
A
MET
38
n
40
MET
38
A
HIS
39
n
41
HIS
39
A
GLU
40
n
42
GLU
40
A
TYR
41
n
43
TYR
41
A
PHE
42
n
44
PHE
42
A
GLN
43
n
45
GLN
43
A
GLN
44
n
46
GLN
44
A
SER
45
n
47
SER
45
A
ASP
46
n
48
ASP
46
A
GLY
-1
n
1
GLY
-1
B
SER
0
n
2
SER
0
B
GLY
1
n
3
GLY
1
B
SER
2
n
4
SER
2
B
PRO
3
n
5
PRO
3
B
LEU
4
n
6
LEU
4
B
ALA
5
n
7
ALA
5
B
GLN
6
n
8
GLN
6
B
GLN
7
n
9
GLN
7
B
ILE
8
n
10
ILE
8
B
LYS
9
n
11
LYS
9
B
ASN
10
n
12
ASN
10
B
ILE
11
n
13
ILE
11
B
HIS
12
n
14
HIS
12
B
SER
13
n
15
SER
13
B
PHE
14
n
16
PHE
14
B
ILE
15
n
17
ILE
15
B
HIS
16
n
18
HIS
16
B
GLN
17
n
19
GLN
17
B
ALA
18
n
20
ALA
18
B
LYS
19
n
21
LYS
19
B
ALA
20
n
22
ALA
20
B
ALA
21
n
23
ALA
21
B
GLY
22
n
24
GLY
22
B
ARG
23
n
25
ARG
23
B
MET
24
n
26
MET
24
B
ASP
25
n
27
ASP
25
B
GLU
26
n
28
GLU
26
B
VAL
27
n
29
VAL
27
B
ARG
28
n
30
ARG
28
B
THR
29
n
31
THR
29
B
LEU
30
n
32
LEU
30
B
GLN
31
n
33
GLN
31
B
GLU
32
n
34
GLU
32
B
ASN
33
n
35
ASN
33
B
LEU
34
n
36
LEU
34
B
HIS
35
n
37
HIS
35
B
GLN
36
n
38
GLN
36
B
LEU
37
n
39
LEU
37
B
MET
38
n
40
MET
38
B
HIS
39
n
41
HIS
39
B
GLU
40
n
42
GLU
40
B
TYR
41
n
43
TYR
41
B
PHE
42
n
44
PHE
42
B
GLN
43
n
45
GLN
43
B
GLN
44
n
46
GLN
44
B
SER
45
n
47
SER
45
B
ASP
46
n
48
ASP
46
B
author_and_software_defined_assembly
PISA
2
dimeric
1210
-6
6550
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
-1
A
GLY
1
1
Y
1
A
SER
0
A
SER
2
1
Y
1
B
B
NE2
O
GLN
HOH
17
70
2.05
B
1
-11.04
1.60
100.20
89.16
A
A
A
CG
SD
CE
MET
MET
MET
24
24
24
B
B
B
N
16.1
-2.2304
0.0000
0.0000
2.0929
0.0000
0.1375
0.2027
0.1623
0.1644
1.28
21.7
973
18922
18922
5.14
RANDOM
1
Anisotropic
THROUGHOUT
1.35
MOLECULAR REPLACEMENT
PDB ENTRY 1YZM
ML
1.28
21.7
60
828
6
0
762
0.016
1.535
15.475
0.088
0.009
0.2745
0.2266
1.3485
123
96
0.2155
0.1721
1.4330
140
99
0.1978
0.1352
1.5436
134
99
0.1769
0.1276
1.6989
142
99
0.2097
0.1422
1.9446
137
100
0.1991
0.1392
2.4495
146
100
0.2000
0.1841
21.7312
151
100
11.3
1.28
21.7
3V1B
19067
19067
-3
-3
0.067
1
38.8
8.2
99.8
0.507
1.28
1.29
2.5
1
8.2
98.7
data collection
HKL-2000
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.7.3_927)
data reduction
HKL-2000
data scaling
HKL-2000
N
Crystal structure of de novo designed MID1-apo2
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
A
SER
2
A
SER
4
HELX_P
A
ALA
21
A
ALA
23
1
1
20
A
ARG
23
A
ARG
25
HELX_P
A
ASP
46
A
ASP
48
1
2
24
B
GLY
1
B
GLY
3
HELX_P
B
ALA
21
B
ALA
23
1
3
21
B
ARG
23
B
ARG
25
HELX_P
B
GLN
44
B
GLN
46
1
4
22
DE NOVO PROTEIN, METAL BINDING PROTEIN
Helix-turn-helix, metal binding, homodimer, DE NOVO PROTEIN, METAL BINDING PROTEIN
3V1B
PDB
1
3V1B
-1
46
3V1B
-1
46
3V1B
A
1
1
48
-1
46
3V1B
-1
46
3V1B
B
1
1
48
BINDING SITE FOR RESIDUE GOL B 47
B
GOL
47
Software
9
A
ASN
10
A
ASN
12
9
2_455
A
HOH
59
D
HOH
9
2_455
B
GLY
22
B
GLY
24
9
1_555
B
ARG
23
B
ARG
25
9
1_555
B
MET
24
B
MET
26
9
1_555
B
ASP
25
B
ASP
27
9
1_555
B
GLU
26
B
GLU
28
9
1_555
B
GLN
44
B
GLN
46
9
2_355
B
HOH
62
E
HOH
9
1_555
19
P 21 21 21