0.018630 0.000000 0.000000 0.000000 0.011799 0.000000 0.000000 0.000000 0.014121 0.00000 0.00000 0.00000 Zhou, D. Wlodawer, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 53.677 84.750 70.817 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C10 H12 O3 180.200 2,7-dihydroxy-4-(propan-2-yl)cyclohepta-2,4,6-trien-1-one beta-thujaplicinol non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mn 2 54.938 MANGANESE (II) ION non-polymer C6 H14 O2 118.174 (4R)-2-METHYLPENTANE-2,4-DIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N C N 184 N O N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N C N 194 N C N 195 N C N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N N N 209 S C N 210 N C N 211 N O N 212 N C N 213 N C N 214 N C N 215 N C N 216 N O N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N C N 237 N C N 238 N N N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N N N 256 S C N 257 N C N 258 N O N 259 N C N 260 N C N 261 N S N 262 N C N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N MN N 276 N C N 277 N C N 278 N O N 279 N C N 280 N C N 281 R C N 282 N O N 283 N C N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C Y 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C N 326 N C N 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N O N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N S N 353 N O N 354 N O N 355 N O N 356 N O N 357 N N N 358 S C N 359 N C N 360 N O N 361 R C N 362 N O N 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N N Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C N 412 N O N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N N N 426 S C N 427 N C N 428 N O N 429 N C N 430 N C N 431 N C N 432 N O N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing Y 294 N doub Y 295 N sing Y 296 N sing N 297 N sing Y 298 N doub N 299 N sing Y 300 N doub N 301 N sing Y 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing Y 367 N doub Y 368 N sing Y 369 N sing N 370 N sing Y 371 N doub Y 372 N sing Y 373 N sing N 374 N sing Y 375 N sing Y 376 N doub N 377 N sing Y 378 N doub N 379 N sing Y 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing Y 395 N doub Y 396 N sing Y 397 N sing N 398 N sing Y 399 N doub N 400 N sing Y 401 N doub N 402 N sing Y 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing US J.Struct.Biol. JSBIEM 0803 1047-8477 177 638 645 10.1016/j.jsb.2012.02.006 22366278 Crystal structures of the reverse transcriptase-associated ribonuclease H domain of xenotropic murine leukemia-virus related virus. 2012 10.2210/pdb3v1r/pdb pdb_00003v1r 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-10-10 MARMOSAIC 300 mm CCD double crystal Si(111) SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 22-ID APS 1.0000 SYNCHROTRON APS BEAMLINE 22-ID 19874.469 Reverse transcriptase/ribonuclease H p80 3.1.26.4 RNase H domain (UNP residues 1154-1328) 1 man polymer 96.063 SULFATE ION 4 syn non-polymer 118.174 (4R)-2-METHYLPENTANE-2,4-DIOL 1 syn non-polymer 54.938 MANGANESE (II) ION 2 syn non-polymer 180.200 2,7-dihydroxy-4-(propan-2-yl)cyclohepta-2,4,6-trien-1-one 1 syn non-polymer 18.015 water 12 nat water no no DRWGSEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALK MAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRM ADQAAREAAMKAVLETSTLL DRWGSEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALK MAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRM ADQAAREAAMKAVLETSTLL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n XMRV sample gag-pol, POL_XMRV3 356663 Xenotropic MuLV-related virus VP35 562 Escherichia coli 1 2.03 39.29 VAPOR DIFFUSION, HANGING DROP 6.5 35% PEG3000, 15% MPD, 2% isopropanol, 0.2 M lithium sulfate, 0.1 M imidazole, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K 293.0 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations 1 0 2012-03-14 1 1 2012-03-28 1 2 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2011-12-09 REL REL SO4 SULFATE ION MRD (4R)-2-METHYLPENTANE-2,4-DIOL MN MANGANESE (II) ION JTH 2,7-dihydroxy-4-(propan-2-yl)cyclohepta-2,4,6-trien-1-one HOH water SO4 1 2 SO4 SO4 1 A SO4 2 2 SO4 SO4 2 A SO4 3 2 SO4 SO4 3 A SO4 4 2 SO4 SO4 4 A MPD 1 3 MRD MRD 672 A MN 1 4 MN MN 673 A MN 2 4 MN MN 674 A JTH 1 5 JTH JTH 675 A HOH 5 6 HOH HOH 5 A HOH 6 6 HOH HOH 6 A HOH 7 6 HOH HOH 7 A HOH 8 6 HOH HOH 8 A HOH 9 6 HOH HOH 9 A HOH 10 6 HOH HOH 10 A HOH 11 6 HOH HOH 11 A HOH 12 6 HOH HOH 12 A HOH 1 6 HOH HOH 676 A HOH 2 6 HOH HOH 677 A HOH 3 6 HOH HOH 678 A HOH 4 6 HOH HOH 679 A n 1 492 A n 2 493 A n 3 494 A n 4 495 A n 5 496 A n 6 497 A n 7 498 A n 8 499 A n 9 500 A n 10 501 A n 11 502 A HIS 503 n 12 HIS 503 A GLY 504 n 13 GLY 504 A THR 505 n 14 THR 505 A ARG 506 n 15 ARG 506 A PRO 507 n 16 PRO 507 A ASP 508 n 17 ASP 508 A LEU 509 n 18 LEU 509 A THR 510 n 19 THR 510 A ASP 511 n 20 ASP 511 A GLN 512 n 21 GLN 512 A PRO 513 n 22 PRO 513 A ILE 514 n 23 ILE 514 A PRO 515 n 24 PRO 515 A ASP 516 n 25 ASP 516 A ALA 517 n 26 ALA 517 A ASP 518 n 27 ASP 518 A TYR 519 n 28 TYR 519 A THR 520 n 29 THR 520 A TRP 521 n 30 TRP 521 A TYR 522 n 31 TYR 522 A THR 523 n 32 THR 523 A ASP 524 n 33 ASP 524 A GLY 525 n 34 GLY 525 A SER 526 n 35 SER 526 A SER 527 n 36 SER 527 A PHE 528 n 37 PHE 528 A LEU 529 n 38 LEU 529 A GLN 530 n 39 GLN 530 A GLU 531 n 40 GLU 531 A GLY 532 n 41 GLY 532 A GLN 533 n 42 GLN 533 A ARG 534 n 43 ARG 534 A ARG 535 n 44 ARG 535 A ALA 536 n 45 ALA 536 A GLY 537 n 46 GLY 537 A ALA 538 n 47 ALA 538 A ALA 539 n 48 ALA 539 A VAL 540 n 49 VAL 540 A THR 541 n 50 THR 541 A THR 542 n 51 THR 542 A GLU 543 n 52 GLU 543 A THR 544 n 53 THR 544 A GLU 545 n 54 GLU 545 A VAL 546 n 55 VAL 546 A ILE 547 n 56 ILE 547 A TRP 548 n 57 TRP 548 A ALA 549 n 58 ALA 549 A ARG 550 n 59 ARG 550 A ALA 551 n 60 ALA 551 A LEU 552 n 61 LEU 552 A PRO 553 n 62 PRO 553 A ALA 554 n 63 ALA 554 A GLY 555 n 64 GLY 555 A THR 556 n 65 THR 556 A SER 557 n 66 SER 557 A ALA 558 n 67 ALA 558 A GLN 559 n 68 GLN 559 A ARG 560 n 69 ARG 560 A ALA 561 n 70 ALA 561 A GLU 562 n 71 GLU 562 A LEU 563 n 72 LEU 563 A ILE 564 n 73 ILE 564 A ALA 565 n 74 ALA 565 A LEU 566 n 75 LEU 566 A THR 567 n 76 THR 567 A GLN 568 n 77 GLN 568 A ALA 569 n 78 ALA 569 A LEU 570 n 79 LEU 570 A LYS 571 n 80 LYS 571 A MET 572 n 81 MET 572 A ALA 573 n 82 ALA 573 A GLU 574 n 83 GLU 574 A GLY 575 n 84 GLY 575 A LYS 576 n 85 LYS 576 A LYS 577 n 86 LYS 577 A LEU 578 n 87 LEU 578 A ASN 579 n 88 ASN 579 A VAL 580 n 89 VAL 580 A TYR 581 n 90 TYR 581 A THR 582 n 91 THR 582 A ASP 583 n 92 ASP 583 A SER 584 n 93 SER 584 A ARG 585 n 94 ARG 585 A TYR 586 n 95 TYR 586 A ALA 587 n 96 ALA 587 A PHE 588 n 97 PHE 588 A ALA 589 n 98 ALA 589 A THR 590 n 99 THR 590 A ALA 591 n 100 ALA 591 A HIS 592 n 101 HIS 592 A VAL 593 n 102 VAL 593 A HIS 594 n 103 HIS 594 A GLY 595 n 104 GLY 595 A GLU 596 n 105 GLU 596 A ILE 597 n 106 ILE 597 A TYR 598 n 107 TYR 598 A ARG 599 n 108 ARG 599 A ARG 600 n 109 ARG 600 A ARG 601 n 110 ARG 601 A GLY 602 n 111 GLY 602 A LEU 603 n 112 LEU 603 A LEU 604 n 113 LEU 604 A THR 605 n 114 THR 605 A SER 606 n 115 SER 606 A GLU 607 n 116 GLU 607 A GLY 608 n 117 GLY 608 A ARG 609 n 118 ARG 609 A GLU 610 n 119 GLU 610 A ILE 611 n 120 ILE 611 A LYS 612 n 121 LYS 612 A ASN 613 n 122 ASN 613 A LYS 614 n 123 LYS 614 A ASN 615 n 124 ASN 615 A GLU 616 n 125 GLU 616 A ILE 617 n 126 ILE 617 A LEU 618 n 127 LEU 618 A ALA 619 n 128 ALA 619 A LEU 620 n 129 LEU 620 A LEU 621 n 130 LEU 621 A LYS 622 n 131 LYS 622 A ALA 623 n 132 ALA 623 A LEU 624 n 133 LEU 624 A PHE 625 n 134 PHE 625 A LEU 626 n 135 LEU 626 A PRO 627 n 136 PRO 627 A LYS 628 n 137 LYS 628 A ARG 629 n 138 ARG 629 A LEU 630 n 139 LEU 630 A SER 631 n 140 SER 631 A ILE 632 n 141 ILE 632 A ILE 633 n 142 ILE 633 A HIS 634 n 143 HIS 634 A CYS 635 n 144 CYS 635 A PRO 636 n 145 PRO 636 A GLY 637 n 146 GLY 637 A HIS 638 n 147 HIS 638 A GLN 639 n 148 GLN 639 A LYS 640 n 149 LYS 640 A GLY 641 n 150 GLY 641 A ASN 642 n 151 ASN 642 A SER 643 n 152 SER 643 A ALA 644 n 153 ALA 644 A GLU 645 n 154 GLU 645 A ALA 646 n 155 ALA 646 A ARG 647 n 156 ARG 647 A GLY 648 n 157 GLY 648 A ASN 649 n 158 ASN 649 A ARG 650 n 159 ARG 650 A MET 651 n 160 MET 651 A ALA 652 n 161 ALA 652 A ASP 653 n 162 ASP 653 A GLN 654 n 163 GLN 654 A ALA 655 n 164 ALA 655 A ALA 656 n 165 ALA 656 A ARG 657 n 166 ARG 657 A GLU 658 n 167 GLU 658 A ALA 659 n 168 ALA 659 A ALA 660 n 169 ALA 660 A MET 661 n 170 MET 661 A LYS 662 n 171 LYS 662 A ALA 663 n 172 ALA 663 A VAL 664 n 173 VAL 664 A LEU 665 n 174 LEU 665 A GLU 666 n 175 GLU 666 A THR 667 n 176 THR 667 A n 177 668 A n 178 669 A n 179 670 A n 180 671 A 3.1182 -0.1707 -0.1231 2.0395 -0.1330 3.1519 -0.0817 0.0294 -0.3771 0.0966 0.0145 0.0890 0.4341 0.0626 -0.0443 0.0679 -0.0428 -0.0087 0.1605 0.0211 0.1021 refined -3.6215 -26.3225 1.6180 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 all author_defined_assembly 1 monomeric A ASP 524 A OD1 ASP 33 1_555 A MN 673 G MN MN 1_555 A GLU 562 A OE2 GLU 71 1_555 107.4 A ASP 524 A OD1 ASP 33 1_555 A MN 673 G MN MN 1_555 A ASP 583 A OD1 ASP 92 1_555 91.3 A GLU 562 A OE2 GLU 71 1_555 A MN 673 G MN MN 1_555 A ASP 583 A OD1 ASP 92 1_555 120.0 A ASP 524 A OD1 ASP 33 1_555 A MN 673 G MN MN 1_555 A ASP 583 A OD2 ASP 92 1_555 89.3 A GLU 562 A OE2 GLU 71 1_555 A MN 673 G MN MN 1_555 A ASP 583 A OD2 ASP 92 1_555 162.3 A ASP 583 A OD1 ASP 92 1_555 A MN 673 G MN MN 1_555 A ASP 583 A OD2 ASP 92 1_555 51.9 A ASP 524 A OD1 ASP 33 1_555 A MN 673 G MN MN 1_555 A JTH 675 I O7 JTH 1_555 140.9 A GLU 562 A OE2 GLU 71 1_555 A MN 673 G MN MN 1_555 A JTH 675 I O7 JTH 1_555 64.7 A ASP 583 A OD1 ASP 92 1_555 A MN 673 G MN MN 1_555 A JTH 675 I O7 JTH 1_555 126.6 A ASP 583 A OD2 ASP 92 1_555 A MN 673 G MN MN 1_555 A JTH 675 I O7 JTH 1_555 106.0 A ASP 524 A OD1 ASP 33 1_555 A MN 673 G MN MN 1_555 A JTH 675 I O1 JTH 1_555 78.4 A GLU 562 A OE2 GLU 71 1_555 A MN 673 G MN MN 1_555 A JTH 675 I O1 JTH 1_555 112.9 A ASP 583 A OD1 ASP 92 1_555 A MN 673 G MN MN 1_555 A JTH 675 I O1 JTH 1_555 126.7 A ASP 583 A OD2 ASP 92 1_555 A MN 673 G MN MN 1_555 A JTH 675 I O1 JTH 1_555 75.5 A JTH 675 I O7 JTH 1_555 A MN 673 G MN MN 1_555 A JTH 675 I O1 JTH 1_555 71.3 A ASP 524 A OD2 ASP 33 1_555 A MN 674 H MN MN 1_555 A ASP 653 A OD1 ASP 162 1_555 101.0 A ASP 524 A OD2 ASP 33 1_555 A MN 674 H MN MN 1_555 A ARG 657 A NH1 ARG 166 1_555 95.1 A ASP 653 A OD1 ASP 162 1_555 A MN 674 H MN MN 1_555 A ARG 657 A NH1 ARG 166 1_555 59.6 A ASP 524 A OD2 ASP 33 1_555 A MN 674 H MN MN 1_555 A JTH 675 I O1 JTH 1_555 107.9 A ASP 653 A OD1 ASP 162 1_555 A MN 674 H MN MN 1_555 A JTH 675 I O1 JTH 1_555 147.4 A ARG 657 A NH1 ARG 166 1_555 A MN 674 H MN MN 1_555 A JTH 675 I O1 JTH 1_555 130.3 A ASP 524 A OD2 ASP 33 1_555 A MN 674 H MN MN 1_555 A JTH 675 I O2 JTH 1_555 164.9 A ASP 653 A OD1 ASP 162 1_555 A MN 674 H MN MN 1_555 A JTH 675 I O2 JTH 1_555 88.8 A ARG 657 A NH1 ARG 166 1_555 A MN 674 H MN MN 1_555 A JTH 675 I O2 JTH 1_555 79.9 A JTH 675 I O1 JTH 1_555 A MN 674 H MN MN 1_555 A JTH 675 I O2 JTH 1_555 66.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 552 A O LEU 61 A N ALA 536 A N ALA 45 A O THR 541 A O THR 50 A N TYR 522 A N TYR 31 A N TYR 519 A N TYR 28 A O ASN 579 A O ASN 88 A N VAL 580 A N VAL 89 A O SER 631 A O SER 140 1 A SO4 2 C SO4 1 A ASP 492 A ASP 1 1 Y 1 A ARG 493 A ARG 2 1 Y 1 A TRP 494 A TRP 3 1 Y 1 A GLY 495 A GLY 4 1 Y 1 A SER 496 A SER 5 1 Y 1 A GLU 497 A GLU 6 1 Y 1 A ILE 498 A ILE 7 1 Y 1 A LEU 499 A LEU 8 1 Y 1 A ALA 500 A ALA 9 1 Y 1 A GLU 501 A GLU 10 1 Y 1 A THR 502 A THR 11 1 Y 1 A SER 668 A SER 177 1 Y 1 A THR 669 A THR 178 1 Y 1 A LEU 670 A LEU 179 1 Y 1 A LEU 671 A LEU 180 1 Y 1 A VAL 593 -127.18 -64.45 -18.5342 0.0000 -0.0000 31.3402 0.0000 -12.8060 0.2774 0.1954 0.2055 2.800 27.171 496 4042 4020 12.34 96.06 0.93 RANDOM 1 1.36 MOLECULAR REPLACEMENT 28.88 0.72 1.00 ML FLAT BULK SOLVENT MODEL 59.382 0.383 2.800 27.171 12 1333 43 0 1278 0.013 1346 0.748 1828 11.330 489 0.050 200 0.003 230 0.3098 0.2200 3.0818 114 764 86.0 0.2781 0.1978 3.5269 119 886 98.0 0.2353 0.1646 4.4404 121 928 100.0 0.2994 0.2111 27.1725 142 946 99.0 2.796 45.347 3V1R 4202 4042 2.0 2.0 0.134 1 3.7 96.2 0.354 2.796 2.90 398 1 3.1 79.4 data collection HKL-2000 phasing PHASES refinement PHENIX (phenix.refine: 1.7.1_743) data reduction HKL-2000 data scaling SCALEPACK Crystal structures of the reverse transcriptase-associated ribonuclease H domain of XMRV with inhibitor beta-thujaplicinol 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 4 N N 4 N N 5 N N 6 N N A SER 557 A SER 66 HELX_P A ALA 573 A ALA 82 1 1 17 A SER 584 A SER 93 HELX_P A VAL 593 A VAL 102 1 2 10 A VAL 593 A VAL 102 HELX_P A GLY 602 A GLY 111 1 3 10 A ASN 613 A ASN 122 HELX_P A LEU 624 A LEU 133 1 4 12 A SER 643 A SER 152 HELX_P A GLU 666 A GLU 175 1 5 24 metalc 2.166 A ASP 524 A OD1 ASP 33 1_555 A MN 673 G MN MN 1_555 metalc 2.162 A ASP 524 A OD2 ASP 33 1_555 A MN 674 H MN MN 1_555 metalc 2.158 A GLU 562 A OE2 GLU 71 1_555 A MN 673 G MN MN 1_555 metalc 2.179 A ASP 583 A OD1 ASP 92 1_555 A MN 673 G MN MN 1_555 metalc 2.708 A ASP 583 A OD2 ASP 92 1_555 A MN 673 G MN MN 1_555 metalc 2.144 A ASP 653 A OD1 ASP 162 1_555 A MN 674 H MN MN 1_555 metalc 2.577 A ARG 657 A NH1 ARG 166 1_555 A MN 674 H MN MN 1_555 metalc 2.251 A MN 673 G MN MN 1_555 A JTH 675 I O7 JTH 1_555 metalc 2.391 A MN 673 G MN MN 1_555 A JTH 675 I O1 JTH 1_555 metalc 2.155 A MN 674 H MN MN 1_555 A JTH 675 I O1 JTH 1_555 metalc 2.312 A MN 674 H MN MN 1_555 A JTH 675 I O2 JTH 1_555 HYDROLASE/HYDROLASE INHIBITOR Reverse Transcription, HYDROLASE-HYDROLASE INHIBITOR complex POL_XMRV3 UNP 1 1154 Q2F7J3 EILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGK KLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAA REAAMKAVLETSTLL 1154 1328 3V1R 497 671 Q2F7J3 A 1 6 180 1 expression tag ASP 492 3V1R A Q2F7J3 UNP 1 1 expression tag ARG 493 3V1R A Q2F7J3 UNP 2 1 expression tag TRP 494 3V1R A Q2F7J3 UNP 3 1 expression tag GLY 495 3V1R A Q2F7J3 UNP 4 1 expression tag SER 496 3V1R A Q2F7J3 UNP 5 5 anti-parallel anti-parallel parallel parallel A VAL 546 A VAL 55 A LEU 552 A LEU 61 A ARG 534 A ARG 43 A THR 541 A THR 50 A TYR 519 A TYR 28 A LEU 529 A LEU 38 A LYS 577 A LYS 86 A THR 582 A THR 91 A ARG 629 A ARG 138 A HIS 634 A HIS 143 BINDING SITE FOR RESIDUE SO4 A 1 A SO4 1 Software 4 BINDING SITE FOR RESIDUE SO4 A 2 A SO4 2 Software 2 BINDING SITE FOR RESIDUE SO4 A 3 A SO4 3 Software 4 BINDING SITE FOR RESIDUE SO4 A 4 A SO4 4 Software 3 BINDING SITE FOR RESIDUE MRD A 672 A MRD 672 Software 7 BINDING SITE FOR RESIDUE MN A 673 A MN 673 Software 4 BINDING SITE FOR RESIDUE MN A 674 A MN 674 Software 5 BINDING SITE FOR RESIDUE JTH A 675 A JTH 675 Software 9 A SER 584 A SER 93 4 1_555 A ARG 585 A ARG 94 4 1_555 A TYR 586 A TYR 95 4 1_555 A LYS 640 A LYS 149 4 4_545 A ARG 534 A ARG 43 2 1_555 A ARG 534 A ARG 43 2 3_555 A PHE 528 A PHE 37 4 1_555 A LEU 529 A LEU 38 4 1_555 A ARG 534 A ARG 43 4 1_555 A ARG 650 A ARG 159 4 4_545 A TYR 522 A TYR 31 3 6_445 A ARG 601 A ARG 110 3 1_555 A ALA 644 A ALA 153 3 6_445 A ARG 560 A ARG 69 7 3_555 A ARG 560 A ARG 69 7 1_555 A ARG 609 A ARG 118 7 1_555 A ARG 609 A ARG 118 7 3_555 A LYS 612 A LYS 121 7 1_555 A ASN 613 A ASN 122 7 1_555 A LYS 614 A LYS 123 7 1_555 A ASP 524 A ASP 33 4 1_555 A GLU 562 A GLU 71 4 1_555 A ASP 583 A ASP 92 4 1_555 A JTH 675 I JTH 4 1_555 A ASP 524 A ASP 33 5 1_555 A HIS 638 A HIS 147 5 1_555 A ASP 653 A ASP 162 5 1_555 A ARG 657 A ARG 166 5 1_555 A JTH 675 I JTH 5 1_555 A ASP 524 A ASP 33 9 1_555 A GLU 562 A GLU 71 9 1_555 A ASP 583 A ASP 92 9 1_555 A HIS 638 A HIS 147 9 4_545 A HIS 638 A HIS 147 9 1_555 A ASP 653 A ASP 162 9 1_555 A ARG 657 A ARG 166 9 1_555 A MN 673 G MN 9 1_555 A MN 674 H MN 9 1_555 20 C 2 2 21