0.018518
0.000000
0.000000
0.000000
0.014981
0.000000
0.000000
0.000000
0.014227
0.000000
0.000000
0.000000
Osipiuk, J.
Duggan, E.
Clancy, S.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
54.002
66.752
70.287
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Dip2269 protein from corynebacterium diphtheriae.
100
1
CCD
2005-10-08
ADSC QUANTUM 315
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
19-ID
APS
0.9792
SYNCHROTRON
APS BEAMLINE 19-ID
16764.658
Uncharacterized protein
2
man
polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
18.015
water
242
nat
water
no
yes
SNA(MSE)VHDSALPFDALP(MSE)PPQGREGFEECPYLDSQWVADTNGQR(MSE)TGQGVDTRFDTPACVFWSYPEAPQ
ATV(MSE)VRH(MSE)PSEEEAIRVVDWAAPIDTTEPAEEPDGWSGGRAGHEEGAVYAVQKGPVAVVVWSNQQQSLKAEL
(MSE)AKEAIARLGL
SNAMVHDSALPFDALPMPPQGREGFEECPYLDSQWVADTNGQRMTGQGVDTRFDTPACVFWSYPEAPQATVMVRHMPSEE
EAIRVVDWAAPIDTTEPAEEPDGWSGGRAGHEEGAVYAVQKGPVAVVVWSNQQQSLKAELMAKEAIARLGL
A,B
APC82926
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NCTC13129
sample
DIP2269
1717
Corynebacterium diphtheriae
469008
Escherichia coli
BL21(DE3)
plasmid
pMCSG7
1
1.89
34.89
VAPOR DIFFUSION, SITTING DROP
8.0
4% PEG 8000, PH 8.0, 20 mM HEPES buffer, 250 mM sodium chloride, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K
291
Midwest Center for Structural Genomics
MCSG
PSI:Biology
software
repository
Initial release
Refinement description
1
0
2012-01-11
1
1
2017-11-08
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
2012-01-25
SPRSDE
Y
RCSB
Y
RCSB
2011-12-20
REL
REL
EDO
1,2-ETHANEDIOL
HOH
water
EDO
401
2
EDO
EDO
401
A
EDO
402
2
EDO
EDO
402
B
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
150
A
HOH
151
3
HOH
HOH
151
A
HOH
152
3
HOH
HOH
152
A
HOH
153
3
HOH
HOH
153
A
HOH
154
3
HOH
HOH
154
A
HOH
155
3
HOH
HOH
155
A
HOH
2
3
HOH
HOH
156
A
HOH
4
3
HOH
HOH
157
A
HOH
5
3
HOH
HOH
158
A
HOH
7
3
HOH
HOH
159
A
HOH
160
3
HOH
HOH
160
A
HOH
161
3
HOH
HOH
161
A
HOH
8
3
HOH
HOH
162
A
HOH
163
3
HOH
HOH
163
A
HOH
164
3
HOH
HOH
164
A
HOH
9
3
HOH
HOH
165
A
HOH
166
3
HOH
HOH
166
A
HOH
167
3
HOH
HOH
167
A
HOH
168
3
HOH
HOH
168
A
HOH
169
3
HOH
HOH
169
A
HOH
12
3
HOH
HOH
170
A
HOH
171
3
HOH
HOH
171
A
HOH
15
3
HOH
HOH
172
A
HOH
173
3
HOH
HOH
173
A
HOH
16
3
HOH
HOH
174
A
HOH
18
3
HOH
HOH
175
A
HOH
19
3
HOH
HOH
176
A
HOH
177
3
HOH
HOH
177
A
HOH
20
3
HOH
HOH
178
A
HOH
179
3
HOH
HOH
179
A
HOH
25
3
HOH
HOH
180
A
HOH
26
3
HOH
HOH
181
A
HOH
30
3
HOH
HOH
182
A
HOH
32
3
HOH
HOH
183
A
HOH
33
3
HOH
HOH
184
A
HOH
185
3
HOH
HOH
185
A
HOH
186
3
HOH
HOH
186
A
HOH
187
3
HOH
HOH
187
A
HOH
36
3
HOH
HOH
188
A
HOH
189
3
HOH
HOH
189
A
HOH
190
3
HOH
HOH
190
A
HOH
37
3
HOH
HOH
191
A
HOH
192
3
HOH
HOH
192
A
HOH
39
3
HOH
HOH
193
A
HOH
194
3
HOH
HOH
194
A
HOH
40
3
HOH
HOH
195
A
HOH
41
3
HOH
HOH
196
A
HOH
42
3
HOH
HOH
197
A
HOH
198
3
HOH
HOH
198
A
HOH
199
3
HOH
HOH
199
A
HOH
200
3
HOH
HOH
200
A
HOH
43
3
HOH
HOH
201
A
HOH
48
3
HOH
HOH
202
A
HOH
49
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
50
3
HOH
HOH
209
A
HOH
51
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
52
3
HOH
HOH
213
A
HOH
55
3
HOH
HOH
214
A
HOH
56
3
HOH
HOH
215
A
HOH
57
3
HOH
HOH
216
A
HOH
58
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
59
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
60
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
61
3
HOH
HOH
225
A
HOH
63
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
66
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
67
3
HOH
HOH
233
A
HOH
68
3
HOH
HOH
234
A
HOH
69
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
70
3
HOH
HOH
239
A
HOH
74
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
75
3
HOH
HOH
243
A
HOH
77
3
HOH
HOH
244
A
HOH
79
3
HOH
HOH
245
A
HOH
80
3
HOH
HOH
246
A
HOH
81
3
HOH
HOH
247
A
HOH
82
3
HOH
HOH
248
A
HOH
83
3
HOH
HOH
249
A
HOH
84
3
HOH
HOH
250
A
HOH
85
3
HOH
HOH
251
A
HOH
88
3
HOH
HOH
252
A
HOH
90
3
HOH
HOH
253
A
HOH
91
3
HOH
HOH
254
A
HOH
92
3
HOH
HOH
255
A
HOH
94
3
HOH
HOH
256
A
HOH
97
3
HOH
HOH
257
A
HOH
98
3
HOH
HOH
258
A
HOH
99
3
HOH
HOH
259
A
HOH
103
3
HOH
HOH
260
A
HOH
104
3
HOH
HOH
261
A
HOH
105
3
HOH
HOH
262
A
HOH
106
3
HOH
HOH
263
A
HOH
107
3
HOH
HOH
264
A
HOH
110
3
HOH
HOH
265
A
HOH
111
3
HOH
HOH
266
A
HOH
112
3
HOH
HOH
267
A
HOH
113
3
HOH
HOH
268
A
HOH
114
3
HOH
HOH
269
A
HOH
117
3
HOH
HOH
270
A
HOH
118
3
HOH
HOH
271
A
HOH
119
3
HOH
HOH
272
A
HOH
122
3
HOH
HOH
273
A
HOH
123
3
HOH
HOH
274
A
HOH
124
3
HOH
HOH
275
A
HOH
126
3
HOH
HOH
276
A
HOH
127
3
HOH
HOH
277
A
HOH
128
3
HOH
HOH
278
A
HOH
129
3
HOH
HOH
279
A
HOH
131
3
HOH
HOH
280
A
HOH
132
3
HOH
HOH
281
A
HOH
133
3
HOH
HOH
282
A
HOH
137
3
HOH
HOH
283
A
HOH
138
3
HOH
HOH
284
A
HOH
139
3
HOH
HOH
285
A
HOH
140
3
HOH
HOH
286
A
HOH
143
3
HOH
HOH
287
A
HOH
148
3
HOH
HOH
288
A
HOH
1
3
HOH
HOH
149
B
HOH
3
3
HOH
HOH
150
B
HOH
6
3
HOH
HOH
151
B
HOH
10
3
HOH
HOH
152
B
HOH
11
3
HOH
HOH
153
B
HOH
13
3
HOH
HOH
154
B
HOH
14
3
HOH
HOH
155
B
HOH
156
3
HOH
HOH
156
B
HOH
157
3
HOH
HOH
157
B
HOH
158
3
HOH
HOH
158
B
HOH
159
3
HOH
HOH
159
B
HOH
17
3
HOH
HOH
160
B
HOH
21
3
HOH
HOH
161
B
HOH
162
3
HOH
HOH
162
B
HOH
22
3
HOH
HOH
163
B
HOH
23
3
HOH
HOH
164
B
HOH
165
3
HOH
HOH
165
B
HOH
24
3
HOH
HOH
166
B
HOH
27
3
HOH
HOH
167
B
HOH
28
3
HOH
HOH
168
B
HOH
29
3
HOH
HOH
169
B
HOH
170
3
HOH
HOH
170
B
HOH
31
3
HOH
HOH
171
B
HOH
172
3
HOH
HOH
172
B
HOH
34
3
HOH
HOH
173
B
HOH
174
3
HOH
HOH
174
B
HOH
175
3
HOH
HOH
175
B
HOH
176
3
HOH
HOH
176
B
HOH
35
3
HOH
HOH
177
B
HOH
178
3
HOH
HOH
178
B
HOH
38
3
HOH
HOH
179
B
HOH
180
3
HOH
HOH
180
B
HOH
181
3
HOH
HOH
181
B
HOH
182
3
HOH
HOH
182
B
HOH
183
3
HOH
HOH
183
B
HOH
184
3
HOH
HOH
184
B
HOH
44
3
HOH
HOH
185
B
HOH
45
3
HOH
HOH
186
B
HOH
46
3
HOH
HOH
187
B
HOH
188
3
HOH
HOH
188
B
HOH
47
3
HOH
HOH
189
B
HOH
53
3
HOH
HOH
190
B
HOH
191
3
HOH
HOH
191
B
HOH
54
3
HOH
HOH
192
B
HOH
193
3
HOH
HOH
193
B
HOH
62
3
HOH
HOH
194
B
HOH
195
3
HOH
HOH
195
B
HOH
196
3
HOH
HOH
196
B
HOH
197
3
HOH
HOH
197
B
HOH
64
3
HOH
HOH
198
B
HOH
65
3
HOH
HOH
199
B
HOH
71
3
HOH
HOH
200
B
HOH
201
3
HOH
HOH
201
B
HOH
202
3
HOH
HOH
202
B
HOH
203
3
HOH
HOH
203
B
HOH
72
3
HOH
HOH
204
B
HOH
73
3
HOH
HOH
205
B
HOH
76
3
HOH
HOH
206
B
HOH
78
3
HOH
HOH
207
B
HOH
86
3
HOH
HOH
208
B
HOH
209
3
HOH
HOH
209
B
HOH
210
3
HOH
HOH
210
B
HOH
87
3
HOH
HOH
211
B
HOH
89
3
HOH
HOH
212
B
HOH
213
3
HOH
HOH
213
B
HOH
214
3
HOH
HOH
214
B
HOH
215
3
HOH
HOH
215
B
HOH
216
3
HOH
HOH
216
B
HOH
217
3
HOH
HOH
217
B
HOH
93
3
HOH
HOH
218
B
HOH
219
3
HOH
HOH
219
B
HOH
95
3
HOH
HOH
220
B
HOH
96
3
HOH
HOH
221
B
HOH
222
3
HOH
HOH
222
B
HOH
100
3
HOH
HOH
223
B
HOH
101
3
HOH
HOH
224
B
HOH
225
3
HOH
HOH
225
B
HOH
226
3
HOH
HOH
226
B
HOH
102
3
HOH
HOH
227
B
HOH
108
3
HOH
HOH
228
B
HOH
229
3
HOH
HOH
229
B
HOH
109
3
HOH
HOH
230
B
HOH
115
3
HOH
HOH
231
B
HOH
116
3
HOH
HOH
232
B
HOH
233
3
HOH
HOH
233
B
HOH
234
3
HOH
HOH
234
B
HOH
235
3
HOH
HOH
235
B
HOH
120
3
HOH
HOH
236
B
HOH
121
3
HOH
HOH
237
B
HOH
125
3
HOH
HOH
238
B
HOH
239
3
HOH
HOH
239
B
HOH
240
3
HOH
HOH
240
B
HOH
130
3
HOH
HOH
241
B
HOH
134
3
HOH
HOH
242
B
HOH
135
3
HOH
HOH
243
B
HOH
136
3
HOH
HOH
244
B
HOH
141
3
HOH
HOH
245
B
HOH
142
3
HOH
HOH
246
B
HOH
144
3
HOH
HOH
247
B
HOH
145
3
HOH
HOH
248
B
HOH
146
3
HOH
HOH
249
B
HOH
147
3
HOH
HOH
250
B
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
VAL
2
n
5
VAL
2
A
HIS
3
n
6
HIS
3
A
ASP
4
n
7
ASP
4
A
SER
5
n
8
SER
5
A
ALA
6
n
9
ALA
6
A
LEU
7
n
10
LEU
7
A
PRO
8
n
11
PRO
8
A
PHE
9
n
12
PHE
9
A
ASP
10
n
13
ASP
10
A
ALA
11
n
14
ALA
11
A
LEU
12
n
15
LEU
12
A
PRO
13
n
16
PRO
13
A
MSE
14
n
17
MSE
14
A
PRO
15
n
18
PRO
15
A
PRO
16
n
19
PRO
16
A
GLN
17
n
20
GLN
17
A
GLY
18
n
21
GLY
18
A
ARG
19
n
22
ARG
19
A
GLU
20
n
23
GLU
20
A
GLY
21
n
24
GLY
21
A
PHE
22
n
25
PHE
22
A
GLU
23
n
26
GLU
23
A
GLU
24
n
27
GLU
24
A
CYS
25
n
28
CYS
25
A
PRO
26
n
29
PRO
26
A
TYR
27
n
30
TYR
27
A
LEU
28
n
31
LEU
28
A
ASP
29
n
32
ASP
29
A
SER
30
n
33
SER
30
A
GLN
31
n
34
GLN
31
A
TRP
32
n
35
TRP
32
A
VAL
33
n
36
VAL
33
A
ALA
34
n
37
ALA
34
A
ASP
35
n
38
ASP
35
A
THR
36
n
39
THR
36
A
ASN
37
n
40
ASN
37
A
GLY
38
n
41
GLY
38
A
GLN
39
n
42
GLN
39
A
ARG
40
n
43
ARG
40
A
MSE
41
n
44
MSE
41
A
THR
42
n
45
THR
42
A
GLY
43
n
46
GLY
43
A
GLN
44
n
47
GLN
44
A
GLY
45
n
48
GLY
45
A
VAL
46
n
49
VAL
46
A
ASP
47
n
50
ASP
47
A
THR
48
n
51
THR
48
A
ARG
49
n
52
ARG
49
A
PHE
50
n
53
PHE
50
A
ASP
51
n
54
ASP
51
A
THR
52
n
55
THR
52
A
PRO
53
n
56
PRO
53
A
ALA
54
n
57
ALA
54
A
CYS
55
n
58
CYS
55
A
VAL
56
n
59
VAL
56
A
PHE
57
n
60
PHE
57
A
TRP
58
n
61
TRP
58
A
SER
59
n
62
SER
59
A
TYR
60
n
63
TYR
60
A
PRO
61
n
64
PRO
61
A
GLU
62
n
65
GLU
62
A
ALA
63
n
66
ALA
63
A
PRO
64
n
67
PRO
64
A
GLN
65
n
68
GLN
65
A
ALA
66
n
69
ALA
66
A
THR
67
n
70
THR
67
A
VAL
68
n
71
VAL
68
A
MSE
69
n
72
MSE
69
A
VAL
70
n
73
VAL
70
A
ARG
71
n
74
ARG
71
A
HIS
72
n
75
HIS
72
A
MSE
73
n
76
MSE
73
A
PRO
74
n
77
PRO
74
A
SER
75
n
78
SER
75
A
GLU
76
n
79
GLU
76
A
GLU
77
n
80
GLU
77
A
GLU
78
n
81
GLU
78
A
ALA
79
n
82
ALA
79
A
ILE
80
n
83
ILE
80
A
ARG
81
n
84
ARG
81
A
VAL
82
n
85
VAL
82
A
VAL
83
n
86
VAL
83
A
ASP
84
n
87
ASP
84
A
TRP
85
n
88
TRP
85
A
ALA
86
n
89
ALA
86
A
ALA
87
n
90
ALA
87
A
PRO
88
n
91
PRO
88
A
ILE
89
n
92
ILE
89
A
ASP
90
n
93
ASP
90
A
THR
91
n
94
THR
91
A
THR
92
n
95
THR
92
A
GLU
93
n
96
GLU
93
A
PRO
94
n
97
PRO
94
A
ALA
95
n
98
ALA
95
A
GLU
96
n
99
GLU
96
A
GLU
97
n
100
GLU
97
A
PRO
98
n
101
PRO
98
A
ASP
99
n
102
ASP
99
A
GLY
100
n
103
GLY
100
A
TRP
101
n
104
TRP
101
A
SER
102
n
105
SER
102
A
GLY
103
n
106
GLY
103
A
GLY
104
n
107
GLY
104
A
ARG
105
n
108
ARG
105
A
ALA
106
n
109
ALA
106
A
GLY
107
n
110
GLY
107
A
HIS
108
n
111
HIS
108
A
GLU
109
n
112
GLU
109
A
GLU
110
n
113
GLU
110
A
GLY
111
n
114
GLY
111
A
ALA
112
n
115
ALA
112
A
VAL
113
n
116
VAL
113
A
TYR
114
n
117
TYR
114
A
ALA
115
n
118
ALA
115
A
VAL
116
n
119
VAL
116
A
GLN
117
n
120
GLN
117
A
LYS
118
n
121
LYS
118
A
GLY
119
n
122
GLY
119
A
PRO
120
n
123
PRO
120
A
VAL
121
n
124
VAL
121
A
ALA
122
n
125
ALA
122
A
VAL
123
n
126
VAL
123
A
VAL
124
n
127
VAL
124
A
VAL
125
n
128
VAL
125
A
TRP
126
n
129
TRP
126
A
SER
127
n
130
SER
127
A
ASN
128
n
131
ASN
128
A
GLN
129
n
132
GLN
129
A
GLN
130
n
133
GLN
130
A
GLN
131
n
134
GLN
131
A
SER
132
n
135
SER
132
A
LEU
133
n
136
LEU
133
A
LYS
134
n
137
LYS
134
A
ALA
135
n
138
ALA
135
A
GLU
136
n
139
GLU
136
A
LEU
137
n
140
LEU
137
A
MSE
138
n
141
MSE
138
A
ALA
139
n
142
ALA
139
A
LYS
140
n
143
LYS
140
A
GLU
141
n
144
GLU
141
A
ALA
142
n
145
ALA
142
A
ILE
143
n
146
ILE
143
A
ALA
144
n
147
ALA
144
A
ARG
145
n
148
ARG
145
A
LEU
146
n
149
LEU
146
A
GLY
147
n
150
GLY
147
A
LEU
148
n
151
LEU
148
A
n
1
-2
B
n
2
-1
B
n
3
0
B
n
4
1
B
VAL
2
n
5
VAL
2
B
HIS
3
n
6
HIS
3
B
ASP
4
n
7
ASP
4
B
SER
5
n
8
SER
5
B
ALA
6
n
9
ALA
6
B
LEU
7
n
10
LEU
7
B
PRO
8
n
11
PRO
8
B
PHE
9
n
12
PHE
9
B
ASP
10
n
13
ASP
10
B
ALA
11
n
14
ALA
11
B
LEU
12
n
15
LEU
12
B
PRO
13
n
16
PRO
13
B
MSE
14
n
17
MSE
14
B
PRO
15
n
18
PRO
15
B
PRO
16
n
19
PRO
16
B
n
20
17
B
n
21
18
B
n
22
19
B
n
23
20
B
n
24
21
B
PHE
22
n
25
PHE
22
B
GLU
23
n
26
GLU
23
B
GLU
24
n
27
GLU
24
B
CYS
25
n
28
CYS
25
B
PRO
26
n
29
PRO
26
B
TYR
27
n
30
TYR
27
B
LEU
28
n
31
LEU
28
B
ASP
29
n
32
ASP
29
B
SER
30
n
33
SER
30
B
GLN
31
n
34
GLN
31
B
TRP
32
n
35
TRP
32
B
VAL
33
n
36
VAL
33
B
ALA
34
n
37
ALA
34
B
ASP
35
n
38
ASP
35
B
THR
36
n
39
THR
36
B
ASN
37
n
40
ASN
37
B
GLY
38
n
41
GLY
38
B
GLN
39
n
42
GLN
39
B
ARG
40
n
43
ARG
40
B
MSE
41
n
44
MSE
41
B
THR
42
n
45
THR
42
B
GLY
43
n
46
GLY
43
B
GLN
44
n
47
GLN
44
B
GLY
45
n
48
GLY
45
B
VAL
46
n
49
VAL
46
B
ASP
47
n
50
ASP
47
B
THR
48
n
51
THR
48
B
ARG
49
n
52
ARG
49
B
PHE
50
n
53
PHE
50
B
ASP
51
n
54
ASP
51
B
THR
52
n
55
THR
52
B
PRO
53
n
56
PRO
53
B
ALA
54
n
57
ALA
54
B
CYS
55
n
58
CYS
55
B
VAL
56
n
59
VAL
56
B
PHE
57
n
60
PHE
57
B
TRP
58
n
61
TRP
58
B
SER
59
n
62
SER
59
B
TYR
60
n
63
TYR
60
B
PRO
61
n
64
PRO
61
B
GLU
62
n
65
GLU
62
B
ALA
63
n
66
ALA
63
B
PRO
64
n
67
PRO
64
B
GLN
65
n
68
GLN
65
B
ALA
66
n
69
ALA
66
B
THR
67
n
70
THR
67
B
VAL
68
n
71
VAL
68
B
MSE
69
n
72
MSE
69
B
VAL
70
n
73
VAL
70
B
ARG
71
n
74
ARG
71
B
HIS
72
n
75
HIS
72
B
MSE
73
n
76
MSE
73
B
PRO
74
n
77
PRO
74
B
SER
75
n
78
SER
75
B
GLU
76
n
79
GLU
76
B
GLU
77
n
80
GLU
77
B
GLU
78
n
81
GLU
78
B
ALA
79
n
82
ALA
79
B
ILE
80
n
83
ILE
80
B
ARG
81
n
84
ARG
81
B
VAL
82
n
85
VAL
82
B
VAL
83
n
86
VAL
83
B
ASP
84
n
87
ASP
84
B
TRP
85
n
88
TRP
85
B
ALA
86
n
89
ALA
86
B
ALA
87
n
90
ALA
87
B
PRO
88
n
91
PRO
88
B
ILE
89
n
92
ILE
89
B
ASP
90
n
93
ASP
90
B
THR
91
n
94
THR
91
B
THR
92
n
95
THR
92
B
GLU
93
n
96
GLU
93
B
PRO
94
n
97
PRO
94
B
ALA
95
n
98
ALA
95
B
GLU
96
n
99
GLU
96
B
GLU
97
n
100
GLU
97
B
PRO
98
n
101
PRO
98
B
ASP
99
n
102
ASP
99
B
GLY
100
n
103
GLY
100
B
TRP
101
n
104
TRP
101
B
SER
102
n
105
SER
102
B
GLY
103
n
106
GLY
103
B
GLY
104
n
107
GLY
104
B
ARG
105
n
108
ARG
105
B
ALA
106
n
109
ALA
106
B
GLY
107
n
110
GLY
107
B
HIS
108
n
111
HIS
108
B
GLU
109
n
112
GLU
109
B
GLU
110
n
113
GLU
110
B
GLY
111
n
114
GLY
111
B
ALA
112
n
115
ALA
112
B
VAL
113
n
116
VAL
113
B
TYR
114
n
117
TYR
114
B
ALA
115
n
118
ALA
115
B
VAL
116
n
119
VAL
116
B
GLN
117
n
120
GLN
117
B
LYS
118
n
121
LYS
118
B
GLY
119
n
122
GLY
119
B
PRO
120
n
123
PRO
120
B
VAL
121
n
124
VAL
121
B
ALA
122
n
125
ALA
122
B
VAL
123
n
126
VAL
123
B
VAL
124
n
127
VAL
124
B
VAL
125
n
128
VAL
125
B
TRP
126
n
129
TRP
126
B
SER
127
n
130
SER
127
B
ASN
128
n
131
ASN
128
B
GLN
129
n
132
GLN
129
B
GLN
130
n
133
GLN
130
B
GLN
131
n
134
GLN
131
B
SER
132
n
135
SER
132
B
LEU
133
n
136
LEU
133
B
LYS
134
n
137
LYS
134
B
ALA
135
n
138
ALA
135
B
GLU
136
n
139
GLU
136
B
LEU
137
n
140
LEU
137
B
MSE
138
n
141
MSE
138
B
ALA
139
n
142
ALA
139
B
LYS
140
n
143
LYS
140
B
GLU
141
n
144
GLU
141
B
ALA
142
n
145
ALA
142
B
ILE
143
n
146
ILE
143
B
ALA
144
n
147
ALA
144
B
ARG
145
n
148
ARG
145
B
LEU
146
n
149
LEU
146
B
GLY
147
n
150
GLY
147
B
LEU
148
n
151
LEU
148
B
0.8557
-0.0039
-0.0788
1.1680
0.0300
0.3031
-0.0305
0.0054
0.0213
0.0240
0.0268
-0.0247
0.0003
-0.0366
0.0037
0.0197
0.0018
0.0032
0.0055
0.0007
0.0164
refined
42.4398
16.4679
8.9707
X-RAY DIFFRACTION
1.0563
0.3531
0.2392
1.2242
0.2996
0.4625
0.0178
-0.0166
0.0634
-0.0681
-0.0244
0.0037
0.0061
-0.0325
0.0066
0.0151
0.0044
0.0080
0.0048
0.0012
0.0192
refined
17.7434
17.4428
25.9923
X-RAY DIFFRACTION
A
2
A
148
X-RAY DIFFRACTION
1
B
2
B
148
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
14
SELENOMETHIONINE
A
MSE
17
MET
A
MSE
41
SELENOMETHIONINE
A
MSE
44
MET
A
MSE
69
SELENOMETHIONINE
A
MSE
72
MET
A
MSE
73
SELENOMETHIONINE
A
MSE
76
MET
A
MSE
138
SELENOMETHIONINE
A
MSE
141
MET
B
MSE
14
SELENOMETHIONINE
B
MSE
17
MET
B
MSE
41
SELENOMETHIONINE
B
MSE
44
MET
B
MSE
69
SELENOMETHIONINE
B
MSE
72
MET
B
MSE
73
SELENOMETHIONINE
B
MSE
76
MET
B
MSE
138
SELENOMETHIONINE
B
MSE
141
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
43
A
N
GLY
46
A
O
TRP
58
A
O
TRP
61
A
N
CYS
55
A
N
CYS
58
A
O
VAL
68
A
O
VAL
71
A
N
ARG
71
A
N
ARG
74
A
O
ALA
122
A
O
ALA
125
A
O
VAL
125
A
O
VAL
128
A
N
TYR
114
A
N
TYR
117
A
O
ALA
115
A
O
ALA
118
A
N
GLY
104
A
N
GLY
107
A
O
ARG
105
A
O
ARG
108
A
N
GLU
93
A
N
GLU
96
B
N
GLY
43
B
N
GLY
46
B
O
TRP
58
B
O
TRP
61
B
N
CYS
55
B
N
CYS
58
B
O
VAL
68
B
O
VAL
71
B
N
ARG
71
B
N
ARG
74
B
O
ALA
122
B
O
ALA
125
B
O
VAL
123
B
O
VAL
126
B
N
VAL
116
B
N
VAL
119
B
O
ALA
115
B
O
ALA
118
B
N
GLY
104
B
N
GLY
107
B
O
ARG
105
B
O
ARG
108
B
N
GLU
93
B
N
GLU
96
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
ALA
0
A
ALA
3
1
Y
1
A
MSE
1
A
MSE
4
1
Y
1
B
SER
-2
B
SER
1
1
Y
1
B
ASN
-1
B
ASN
2
1
Y
1
B
ALA
0
B
ALA
3
1
Y
1
B
MSE
1
B
MSE
4
1
Y
1
B
GLN
17
B
GLN
20
1
Y
1
B
GLY
18
B
GLY
21
1
Y
1
B
ARG
19
B
ARG
22
1
Y
1
B
GLU
20
B
GLU
23
1
Y
1
B
GLY
21
B
GLY
24
1
Y
1
A
A
O
O
HOH
HOH
184
221
2.16
1
A
A
CE2
CD2
TRP
TRP
32
32
0.088
0.012
1.409
1.497
N
1
B
B
CG
CD2
HIS
HIS
108
108
0.067
0.009
1.354
1.421
N
1
A
A
O
O
HOH
HOH
230
281
2.11
1_555
3_655
1
A
B
OE2
O
GLU
HOH
109
205
2.12
B
1_555
4_556
1
A
SER
59
-112.51
-150.60
1
B
SER
59
-120.99
-151.22
75.060
22.5423
10.030
-0.5400
0.0000
0.0000
-1.9800
0.0000
2.5200
0.9710
0.9450
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
0.2279
0.1772
0.1810
0.1810
1.743
36.0
1991
25697
25697
7.7000
96.5900
1.000
0.350
6.2620
0.0950
RANDOM
1
THROUGHOUT
0.000
0
SAD
0.1380
0.1350
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
1.743
36.0
242
2473
8
0
2223
0.020
0.020
2359
0.001
0.020
1583
1.763
1.947
3236
1.001
3.002
3864
5.522
5.000
306
35.912
24.912
114
13.395
15.000
355
15.504
15.000
14
0.110
0.200
339
0.010
0.021
2703
0.001
0.020
463
0.3320
0.3120
1.7890
114
1256
1370
1370
20
74.3800
26.0
1.750
36.0
3V7B
25734
25734
0
0
0.173
1.629
1
6.000
12.000
96.900
0.704
1.750
1.790
1.84
1448
1.104
1
6.300
77.700
0.704
1.790
1.840
1603
1.056
1
8.100
86.600
0.635
1.840
1.900
1782
1.124
1
9.200
95.200
0.538
1.900
1.960
1840
1.168
1
10.700
98.100
0.422
1.960
2.030
1835
1.267
1
12.000
99.100
0.401
2.030
2.110
1883
1.287
1
12.900
99.600
0.336
2.110
2.200
1858
1.345
1
13.400
99.900
0.280
2.200
2.320
1890
1.488
1
13.600
100.000
0.236
2.320
2.470
1887
1.595
1
13.700
100.000
0.207
2.470
2.660
1880
1.773
1
13.700
100.000
0.167
2.660
2.920
1912
1.826
1
13.500
100.000
0.136
2.920
3.350
1925
1.892
1
13.200
100.000
0.104
3.350
4.220
1944
1.983
1
12.900
100.000
0.108
4.220
40.000
2047
2.825
1
13.000
99.800
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.6.0117
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
SBC-Collect
data reduction
HKL-2000
data scaling
HKL-2000
phasing
SHELXD
phasing
MLPHARE
phasing
DM
phasing
SOLVE
phasing
RESOLVE
Uncharacterized protein
Dip2269 protein from corynebacterium diphtheriae
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
HIS
3
A
HIS
6
HELX_P
A
LEU
7
A
LEU
10
5
1
5
A
GLN
17
A
GLN
20
HELX_P
A
GLY
21
A
GLY
24
5
2
5
A
ASP
29
A
ASP
32
HELX_P
A
GLY
38
A
GLY
41
1
3
10
A
SER
75
A
SER
78
HELX_P
A
ALA
87
A
ALA
90
1
4
13
A
GLN
131
A
GLN
134
HELX_P
A
GLY
147
A
GLY
150
1
5
17
B
HIS
3
B
HIS
6
HELX_P
B
LEU
7
B
LEU
10
5
6
5
B
ASP
29
B
ASP
32
HELX_P
B
GLY
38
B
GLY
41
1
7
10
B
SER
75
B
SER
78
HELX_P
B
ALA
87
B
ALA
90
1
8
13
B
GLN
131
B
GLN
134
HELX_P
B
GLY
147
B
GLY
150
1
9
17
disulf
2.124
A
CYS
25
A
SG
CYS
28
1_555
A
CYS
55
A
SG
CYS
58
1_555
disulf
2.187
B
CYS
25
B
SG
CYS
28
1_555
B
CYS
55
B
SG
CYS
58
1_555
covale
1.321
A
PRO
13
A
C
PRO
16
1_555
A
MSE
14
A
N
MSE
17
1_555
covale
1.327
A
MSE
14
A
C
MSE
17
1_555
A
PRO
15
A
N
PRO
18
1_555
covale
1.332
A
ARG
40
A
C
ARG
43
1_555
A
MSE
41
A
N
MSE
44
1_555
covale
1.313
A
MSE
41
A
C
MSE
44
1_555
A
THR
42
A
N
THR
45
1_555
covale
1.337
A
VAL
68
A
C
VAL
71
1_555
A
MSE
69
A
N
MSE
72
1_555
covale
1.341
A
MSE
69
A
C
MSE
72
1_555
A
VAL
70
A
N
VAL
73
1_555
covale
1.315
A
HIS
72
A
C
HIS
75
1_555
A
MSE
73
A
N
MSE
76
1_555
covale
1.353
A
MSE
73
A
C
MSE
76
1_555
A
PRO
74
A
N
PRO
77
1_555
covale
1.334
A
LEU
137
A
C
LEU
140
1_555
A
MSE
138
A
N
MSE
141
1_555
covale
1.328
A
MSE
138
A
C
MSE
141
1_555
A
ALA
139
A
N
ALA
142
1_555
covale
1.301
B
PRO
13
B
C
PRO
16
1_555
B
MSE
14
B
N
MSE
17
1_555
covale
1.335
B
MSE
14
B
C
MSE
17
1_555
B
PRO
15
B
N
PRO
18
1_555
covale
1.320
B
ARG
40
B
C
ARG
43
1_555
B
MSE
41
B
N
MSE
44
1_555
covale
1.326
B
MSE
41
B
C
MSE
44
1_555
B
THR
42
B
N
THR
45
1_555
covale
1.335
B
VAL
68
B
C
VAL
71
1_555
B
MSE
69
B
N
MSE
72
1_555
covale
1.327
B
MSE
69
B
C
MSE
72
1_555
B
VAL
70
B
N
VAL
73
1_555
covale
1.309
B
HIS
72
B
C
HIS
75
1_555
B
MSE
73
B
N
MSE
76
1_555
covale
1.365
B
MSE
73
B
C
MSE
76
1_555
B
PRO
74
B
N
PRO
77
1_555
covale
1.314
B
LEU
137
B
C
LEU
140
1_555
B
MSE
138
B
N
MSE
141
1_555
covale
1.330
B
MSE
138
B
C
MSE
141
1_555
B
ALA
139
B
N
ALA
142
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION
A
GLU
97
A
GLU
100
1
A
PRO
98
A
PRO
101
-8.60
B
GLU
97
B
GLU
100
1
B
PRO
98
B
PRO
101
0.48
Q6NEK4_CORDI
UNP
1
2
Q6NEK4
VHDSALPFDALPMPPQGREGFEECPYLDSQWVADTNGQRMTGQGVDTRFDTPACVFWSYPEAPQATVMVRHMPSEEEAIR
VVDWAAPIDTTEPAEEPDGWSGGRAGHEEGAVYAVQKGPVAVVVWSNQQQSLKAELMAKEAIARLGL
2
148
3V7B
2
148
Q6NEK4
A
1
5
151
2
148
3V7B
2
148
Q6NEK4
B
1
5
151
1
EXPRESSION TAG
SER
-2
3V7B
A
Q6NEK4
UNP
1
1
EXPRESSION TAG
ASN
-1
3V7B
A
Q6NEK4
UNP
2
1
EXPRESSION TAG
ALA
0
3V7B
A
Q6NEK4
UNP
3
1
EXPRESSION TAG
MSE
1
3V7B
A
Q6NEK4
UNP
4
2
EXPRESSION TAG
SER
-2
3V7B
B
Q6NEK4
UNP
1
2
EXPRESSION TAG
ASN
-1
3V7B
B
Q6NEK4
UNP
2
2
EXPRESSION TAG
ALA
0
3V7B
B
Q6NEK4
UNP
3
2
EXPRESSION TAG
MSE
1
3V7B
B
Q6NEK4
UNP
4
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
43
A
GLY
46
A
ASP
47
A
ASP
50
A
ALA
54
A
ALA
57
A
TRP
58
A
TRP
61
A
ALA
66
A
ALA
69
A
HIS
72
A
HIS
75
A
VAL
121
A
VAL
124
A
SER
127
A
SER
130
A
GLY
111
A
GLY
114
A
LYS
118
A
LYS
121
A
SER
102
A
SER
105
A
HIS
108
A
HIS
111
A
GLU
93
A
GLU
96
A
ALA
95
A
ALA
98
B
GLY
43
B
GLY
46
B
ASP
47
B
ASP
50
B
ALA
54
B
ALA
57
B
TRP
58
B
TRP
61
B
ALA
66
B
ALA
69
B
HIS
72
B
HIS
75
B
VAL
121
B
VAL
124
B
SER
127
B
SER
130
B
GLY
111
B
GLY
114
B
LYS
118
B
LYS
121
B
SER
102
B
SER
105
B
HIS
108
B
HIS
111
B
GLU
93
B
GLU
96
B
ALA
95
B
ALA
98
BINDING SITE FOR RESIDUE EDO A 401
Software
5
BINDING SITE FOR RESIDUE EDO B 402
Software
6
A
PRO
64
A
PRO
67
5
1_555
A
THR
67
A
THR
70
5
1_555
A
TRP
126
A
TRP
129
5
1_555
A
HOH
245
E
HOH
5
1_555
A
HOH
257
E
HOH
5
1_555
B
PRO
64
B
PRO
67
6
1_555
B
THR
67
B
THR
70
6
1_555
B
TRP
126
B
TRP
129
6
1_555
B
HOH
156
F
HOH
6
1_555
B
HOH
195
F
HOH
6
1_555
B
HOH
213
F
HOH
6
1_555
18
P 21 21 2