0.017612
0.000000
0.000000
0.000000
0.012968
0.000000
0.000000
0.000000
0.008572
0.00000
0.00000
0.00000
Rangarajan, S.
Jaeger, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
56.779
77.114
116.653
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
O
N
90
N
P
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
C
N
95
R
C
N
96
N
O
N
97
S
C
N
98
N
O
N
99
N
C
N
100
R
C
Y
101
N
N
Y
102
N
C
Y
103
N
N
Y
104
N
C
Y
105
N
C
N
106
N
N
Y
107
N
N
Y
108
N
C
Y
109
N
N
Y
110
N
C
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
O
N
126
N
P
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
N
C
N
136
R
C
N
137
N
N
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
C
N
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
Y
171
N
N
Y
172
N
C
Y
173
N
N
Y
174
N
C
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
N
Y
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
P
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
O
N
204
S
C
N
205
N
O
N
206
N
C
N
207
R
C
N
208
N
N
N
209
N
C
N
210
N
O
N
211
N
N
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
N
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
N
C
N
273
N
C
N
274
N
O
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
N
Y
288
N
C
Y
289
N
C
Y
290
N
N
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
S
C
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
N
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
C
N
380
N
S
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
NA
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
N
N
436
S
C
N
437
N
C
N
438
N
O
N
439
N
C
N
440
N
O
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
R
C
N
454
N
O
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
N
N
467
S
C
N
468
N
C
N
469
N
O
N
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
N
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
C
N
480
N
O
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
N
N
494
S
C
N
495
N
C
N
496
N
O
N
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
Y
502
N
C
Y
503
N
C
N
504
N
O
N
505
N
O
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
N
N
518
S
C
N
519
N
C
N
520
N
O
N
521
N
C
N
522
N
C
N
523
N
C
N
524
N
O
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
To be Published
0353
Crystallographic studies of K72E mutant DNA polymerase explain loss of lyase function and reveal changes in the overall conformational state of the polymerase domain
10.2210/pdb3v7j/pdb
pdb_00003v7j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-07-19
MAR CCD 165 mm
Single crystal bender
SINGLE WAVELENGTH
M
x-ray
1
0.97907
1.0
X4C
NSLS
0.97907
SYNCHROTRON
NSLS BEAMLINE X4C
39058.438
DNA polymerase beta
2.7.7.7, 4.2.99.-
1
man
polymer
2481.652
DNA (5'-D(P*AP*TP*GP*TP*GP*AP*GP*T)-3')
1
syn
polymer
3599.396
DNA (5'-D(P*CP*AP*AP*AP*CP*TP*CP*AP*CP*AP*TP*A)-3')
1
syn
polymer
22.990
SODIUM ION
8
syn
non-polymer
35.453
CHLORIDE ION
4
syn
non-polymer
18.015
water
356
nat
water
no
no
MGHHHHHHRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDE
FLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEM
LQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKF
MGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDS
EQDIFDYIQWRYREPKDRSE
MGHHHHHHRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDE
FLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEM
LQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKF
MGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDS
EQDIFDYIQWRYREPKDRSE
A
polypeptide(L)
no
no
(DA)(DT)(DG)(DT)(DG)(DA)(DG)(DT)
ATGTGAGT
P
polydeoxyribonucleotide
no
no
(DC)(DA)(DA)(DA)(DC)(DT)(DC)(DA)(DC)(DA)(DT)(DA)
CAAACTCACATA
T
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
rat
sample
Polb
10116
Rattus norvegicus
562
Escherichia coli
Rosetta2(DE3)
pET28a
1
2.83
56.52
VAPOR DIFFUSION, SITTING DROP
6.5
PEG 3350, NaCl, Glycerol, Cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 296K
296
-23.247
1
20
P
0
T
11
4.654
P_DA0:DT11_T
1
0.600
-0.362
-0.759
-0.174
0.106
1
20
P
1
T
10
9.441
P_DT1:DA10_T
2
-2.722
-0.574
-0.198
-0.124
-5.161
1
19
P
2
T
9
2.674
P_DG2:DC9_T
3
-3.276
-0.339
-0.353
0.069
-1.089
1
20
P
3
T
8
1.527
P_DT3:DA8_T
4
-7.394
-0.240
0.454
-0.168
-8.497
1
19
P
4
T
7
-1.411
P_DG4:DC7_T
5
-11.154
-0.070
-0.104
-0.341
0.669
1
20
P
5
T
6
0.284
P_DA5:DT6_T
6
-7.279
0.357
0.252
-0.165
5.691
1
19
P
6
T
5
0.578
P_DG6:DC5_T
7
-9.783
-0.052
0.246
0.019
9.472
1
20
P
7
T
4
1.245
P_DT7:DA4_T
8
-9.602
-0.465
-0.302
-0.319
2.878
24.999
P
P
0
1
2.023
T
T
11
10
2.890
0.870
-0.288
-0.407
PP_DA0DT1:DA10DT11_TT
1
-4.748
11.036
24.536
-1.171
-0.592
3.450
34.256
P
P
1
2
9.824
T
T
10
9
3.544
5.760
-0.312
-0.322
PP_DT1DG2:DC9DA10_TT
2
-0.823
1.404
33.773
-1.523
0.389
3.187
31.438
P
P
2
3
3.755
T
T
9
8
3.196
2.024
-0.430
-0.476
PP_DG2DT3:DA8DC9_TT
3
-5.233
9.707
30.946
-1.252
-0.170
3.318
36.017
P
P
3
4
8.782
T
T
8
7
3.429
5.406
0.346
-0.622
PP_DT3DG4:DC7DA8_TT
4
2.772
-4.504
35.518
-1.803
-0.151
2.879
32.037
P
P
4
5
13.184
T
T
7
6
3.043
7.212
0.083
-0.355
PP_DG4DA5:DT6DC7_TT
5
-2.085
3.812
31.168
-1.836
-0.495
3.173
32.282
P
P
5
6
10.993
T
T
6
5
3.276
6.076
0.046
-0.257
PP_DA5DG6:DC5DT6_TT
6
1.080
-1.955
31.702
-1.536
0.109
3.167
27.789
P
P
6
7
4.440
T
T
5
4
3.249
2.119
-0.002
-0.270
PP_DG6DT7:DA4DC5_TT
7
5.096
-10.679
27.246
-1.066
1.217
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
1
0
2013-01-16
1
1
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-12-21
REL
REL
NA
SODIUM ION
CL
CHLORIDE ION
HOH
water
NA
1
4
NA
NA
336
A
NA
2
4
NA
NA
337
A
NA
3
4
NA
NA
338
A
NA
4
4
NA
NA
339
A
NA
5
4
NA
NA
340
A
NA
6
4
NA
NA
341
A
NA
7
4
NA
NA
342
A
NA
8
4
NA
NA
343
A
CL
9
5
CL
CL
344
A
CL
10
5
CL
CL
345
A
CL
11
5
CL
CL
346
A
CL
12
5
CL
CL
347
A
HOH
348
6
HOH
HOH
348
A
HOH
1
6
HOH
HOH
349
A
HOH
2
6
HOH
HOH
350
A
HOH
351
6
HOH
HOH
351
A
HOH
352
6
HOH
HOH
352
A
HOH
353
6
HOH
HOH
353
A
HOH
354
6
HOH
HOH
354
A
HOH
355
6
HOH
HOH
355
A
HOH
356
6
HOH
HOH
356
A
HOH
357
6
HOH
HOH
357
A
HOH
358
6
HOH
HOH
358
A
HOH
359
6
HOH
HOH
359
A
HOH
360
6
HOH
HOH
360
A
HOH
361
6
HOH
HOH
361
A
HOH
362
6
HOH
HOH
362
A
HOH
363
6
HOH
HOH
363
A
HOH
364
6
HOH
HOH
364
A
HOH
365
6
HOH
HOH
365
A
HOH
366
6
HOH
HOH
366
A
HOH
3
6
HOH
HOH
367
A
HOH
368
6
HOH
HOH
368
A
HOH
369
6
HOH
HOH
369
A
HOH
4
6
HOH
HOH
370
A
HOH
5
6
HOH
HOH
371
A
HOH
6
6
HOH
HOH
372
A
HOH
7
6
HOH
HOH
373
A
HOH
374
6
HOH
HOH
374
A
HOH
375
6
HOH
HOH
375
A
HOH
376
6
HOH
HOH
376
A
HOH
9
6
HOH
HOH
377
A
HOH
378
6
HOH
HOH
378
A
HOH
379
6
HOH
HOH
379
A
HOH
380
6
HOH
HOH
380
A
HOH
381
6
HOH
HOH
381
A
HOH
10
6
HOH
HOH
382
A
HOH
383
6
HOH
HOH
383
A
HOH
384
6
HOH
HOH
384
A
HOH
385
6
HOH
HOH
385
A
HOH
386
6
HOH
HOH
386
A
HOH
387
6
HOH
HOH
387
A
HOH
388
6
HOH
HOH
388
A
HOH
389
6
HOH
HOH
389
A
HOH
390
6
HOH
HOH
390
A
HOH
11
6
HOH
HOH
391
A
HOH
12
6
HOH
HOH
392
A
HOH
393
6
HOH
HOH
393
A
HOH
394
6
HOH
HOH
394
A
HOH
395
6
HOH
HOH
395
A
HOH
13
6
HOH
HOH
396
A
HOH
14
6
HOH
HOH
397
A
HOH
15
6
HOH
HOH
398
A
HOH
16
6
HOH
HOH
399
A
HOH
17
6
HOH
HOH
400
A
HOH
18
6
HOH
HOH
401
A
HOH
20
6
HOH
HOH
402
A
HOH
21
6
HOH
HOH
403
A
HOH
22
6
HOH
HOH
404
A
HOH
24
6
HOH
HOH
405
A
HOH
25
6
HOH
HOH
406
A
HOH
26
6
HOH
HOH
407
A
HOH
28
6
HOH
HOH
408
A
HOH
29
6
HOH
HOH
409
A
HOH
30
6
HOH
HOH
410
A
HOH
32
6
HOH
HOH
411
A
HOH
33
6
HOH
HOH
412
A
HOH
34
6
HOH
HOH
413
A
HOH
35
6
HOH
HOH
414
A
HOH
36
6
HOH
HOH
415
A
HOH
37
6
HOH
HOH
416
A
HOH
38
6
HOH
HOH
417
A
HOH
39
6
HOH
HOH
418
A
HOH
41
6
HOH
HOH
419
A
HOH
42
6
HOH
HOH
420
A
HOH
44
6
HOH
HOH
421
A
HOH
45
6
HOH
HOH
422
A
HOH
47
6
HOH
HOH
423
A
HOH
48
6
HOH
HOH
424
A
HOH
49
6
HOH
HOH
425
A
HOH
51
6
HOH
HOH
426
A
HOH
52
6
HOH
HOH
427
A
HOH
53
6
HOH
HOH
428
A
HOH
56
6
HOH
HOH
429
A
HOH
60
6
HOH
HOH
430
A
HOH
61
6
HOH
HOH
431
A
HOH
62
6
HOH
HOH
432
A
HOH
63
6
HOH
HOH
433
A
HOH
64
6
HOH
HOH
434
A
HOH
65
6
HOH
HOH
435
A
HOH
66
6
HOH
HOH
436
A
HOH
67
6
HOH
HOH
437
A
HOH
68
6
HOH
HOH
438
A
HOH
70
6
HOH
HOH
439
A
HOH
71
6
HOH
HOH
440
A
HOH
76
6
HOH
HOH
441
A
HOH
77
6
HOH
HOH
442
A
HOH
78
6
HOH
HOH
443
A
HOH
79
6
HOH
HOH
444
A
HOH
82
6
HOH
HOH
445
A
HOH
83
6
HOH
HOH
446
A
HOH
85
6
HOH
HOH
447
A
HOH
86
6
HOH
HOH
448
A
HOH
87
6
HOH
HOH
449
A
HOH
88
6
HOH
HOH
450
A
HOH
89
6
HOH
HOH
451
A
HOH
90
6
HOH
HOH
452
A
HOH
93
6
HOH
HOH
453
A
HOH
94
6
HOH
HOH
454
A
HOH
95
6
HOH
HOH
455
A
HOH
96
6
HOH
HOH
456
A
HOH
97
6
HOH
HOH
457
A
HOH
98
6
HOH
HOH
458
A
HOH
99
6
HOH
HOH
459
A
HOH
100
6
HOH
HOH
460
A
HOH
101
6
HOH
HOH
461
A
HOH
102
6
HOH
HOH
462
A
HOH
103
6
HOH
HOH
463
A
HOH
105
6
HOH
HOH
464
A
HOH
106
6
HOH
HOH
465
A
HOH
107
6
HOH
HOH
466
A
HOH
108
6
HOH
HOH
467
A
HOH
109
6
HOH
HOH
468
A
HOH
110
6
HOH
HOH
469
A
HOH
111
6
HOH
HOH
470
A
HOH
112
6
HOH
HOH
471
A
HOH
113
6
HOH
HOH
472
A
HOH
114
6
HOH
HOH
473
A
HOH
115
6
HOH
HOH
474
A
HOH
116
6
HOH
HOH
475
A
HOH
117
6
HOH
HOH
476
A
HOH
118
6
HOH
HOH
477
A
HOH
119
6
HOH
HOH
478
A
HOH
120
6
HOH
HOH
479
A
HOH
123
6
HOH
HOH
480
A
HOH
124
6
HOH
HOH
481
A
HOH
125
6
HOH
HOH
482
A
HOH
126
6
HOH
HOH
483
A
HOH
127
6
HOH
HOH
484
A
HOH
128
6
HOH
HOH
485
A
HOH
129
6
HOH
HOH
486
A
HOH
130
6
HOH
HOH
487
A
HOH
131
6
HOH
HOH
488
A
HOH
133
6
HOH
HOH
489
A
HOH
134
6
HOH
HOH
490
A
HOH
135
6
HOH
HOH
491
A
HOH
136
6
HOH
HOH
492
A
HOH
138
6
HOH
HOH
493
A
HOH
139
6
HOH
HOH
494
A
HOH
141
6
HOH
HOH
495
A
HOH
143
6
HOH
HOH
496
A
HOH
144
6
HOH
HOH
497
A
HOH
145
6
HOH
HOH
498
A
HOH
146
6
HOH
HOH
499
A
HOH
149
6
HOH
HOH
500
A
HOH
151
6
HOH
HOH
501
A
HOH
153
6
HOH
HOH
502
A
HOH
155
6
HOH
HOH
503
A
HOH
156
6
HOH
HOH
504
A
HOH
157
6
HOH
HOH
505
A
HOH
159
6
HOH
HOH
506
A
HOH
160
6
HOH
HOH
507
A
HOH
162
6
HOH
HOH
508
A
HOH
163
6
HOH
HOH
509
A
HOH
164
6
HOH
HOH
510
A
HOH
165
6
HOH
HOH
511
A
HOH
166
6
HOH
HOH
512
A
HOH
167
6
HOH
HOH
513
A
HOH
168
6
HOH
HOH
514
A
HOH
169
6
HOH
HOH
515
A
HOH
170
6
HOH
HOH
516
A
HOH
172
6
HOH
HOH
517
A
HOH
173
6
HOH
HOH
518
A
HOH
174
6
HOH
HOH
519
A
HOH
175
6
HOH
HOH
520
A
HOH
176
6
HOH
HOH
521
A
HOH
177
6
HOH
HOH
522
A
HOH
178
6
HOH
HOH
523
A
HOH
179
6
HOH
HOH
524
A
HOH
180
6
HOH
HOH
525
A
HOH
181
6
HOH
HOH
526
A
HOH
182
6
HOH
HOH
527
A
HOH
184
6
HOH
HOH
528
A
HOH
188
6
HOH
HOH
529
A
HOH
189
6
HOH
HOH
530
A
HOH
190
6
HOH
HOH
531
A
HOH
192
6
HOH
HOH
532
A
HOH
193
6
HOH
HOH
533
A
HOH
194
6
HOH
HOH
534
A
HOH
195
6
HOH
HOH
535
A
HOH
196
6
HOH
HOH
536
A
HOH
197
6
HOH
HOH
537
A
HOH
198
6
HOH
HOH
538
A
HOH
200
6
HOH
HOH
539
A
HOH
203
6
HOH
HOH
540
A
HOH
204
6
HOH
HOH
541
A
HOH
206
6
HOH
HOH
542
A
HOH
207
6
HOH
HOH
543
A
HOH
209
6
HOH
HOH
544
A
HOH
210
6
HOH
HOH
545
A
HOH
211
6
HOH
HOH
546
A
HOH
212
6
HOH
HOH
547
A
HOH
214
6
HOH
HOH
548
A
HOH
215
6
HOH
HOH
549
A
HOH
220
6
HOH
HOH
550
A
HOH
221
6
HOH
HOH
551
A
HOH
222
6
HOH
HOH
552
A
HOH
224
6
HOH
HOH
553
A
HOH
227
6
HOH
HOH
554
A
HOH
228
6
HOH
HOH
555
A
HOH
229
6
HOH
HOH
556
A
HOH
230
6
HOH
HOH
557
A
HOH
232
6
HOH
HOH
558
A
HOH
233
6
HOH
HOH
559
A
HOH
234
6
HOH
HOH
560
A
HOH
235
6
HOH
HOH
561
A
HOH
236
6
HOH
HOH
562
A
HOH
239
6
HOH
HOH
563
A
HOH
242
6
HOH
HOH
564
A
HOH
243
6
HOH
HOH
565
A
HOH
244
6
HOH
HOH
566
A
HOH
246
6
HOH
HOH
567
A
HOH
248
6
HOH
HOH
568
A
HOH
249
6
HOH
HOH
569
A
HOH
251
6
HOH
HOH
570
A
HOH
252
6
HOH
HOH
571
A
HOH
253
6
HOH
HOH
572
A
HOH
254
6
HOH
HOH
573
A
HOH
257
6
HOH
HOH
574
A
HOH
258
6
HOH
HOH
575
A
HOH
259
6
HOH
HOH
576
A
HOH
260
6
HOH
HOH
577
A
HOH
261
6
HOH
HOH
578
A
HOH
264
6
HOH
HOH
579
A
HOH
265
6
HOH
HOH
580
A
HOH
267
6
HOH
HOH
581
A
HOH
269
6
HOH
HOH
582
A
HOH
270
6
HOH
HOH
583
A
HOH
273
6
HOH
HOH
584
A
HOH
274
6
HOH
HOH
585
A
HOH
275
6
HOH
HOH
586
A
HOH
277
6
HOH
HOH
587
A
HOH
278
6
HOH
HOH
588
A
HOH
279
6
HOH
HOH
589
A
HOH
280
6
HOH
HOH
590
A
HOH
281
6
HOH
HOH
591
A
HOH
285
6
HOH
HOH
592
A
HOH
286
6
HOH
HOH
593
A
HOH
287
6
HOH
HOH
594
A
HOH
289
6
HOH
HOH
595
A
HOH
290
6
HOH
HOH
596
A
HOH
293
6
HOH
HOH
597
A
HOH
295
6
HOH
HOH
598
A
HOH
296
6
HOH
HOH
599
A
HOH
299
6
HOH
HOH
600
A
HOH
300
6
HOH
HOH
601
A
HOH
303
6
HOH
HOH
602
A
HOH
304
6
HOH
HOH
603
A
HOH
306
6
HOH
HOH
604
A
HOH
307
6
HOH
HOH
605
A
HOH
308
6
HOH
HOH
606
A
HOH
309
6
HOH
HOH
607
A
HOH
310
6
HOH
HOH
608
A
HOH
311
6
HOH
HOH
609
A
HOH
312
6
HOH
HOH
610
A
HOH
313
6
HOH
HOH
611
A
HOH
317
6
HOH
HOH
612
A
HOH
318
6
HOH
HOH
613
A
HOH
319
6
HOH
HOH
614
A
HOH
320
6
HOH
HOH
615
A
HOH
321
6
HOH
HOH
616
A
HOH
322
6
HOH
HOH
617
A
HOH
324
6
HOH
HOH
618
A
HOH
325
6
HOH
HOH
619
A
HOH
326
6
HOH
HOH
620
A
HOH
332
6
HOH
HOH
621
A
HOH
333
6
HOH
HOH
622
A
HOH
334
6
HOH
HOH
623
A
HOH
335
6
HOH
HOH
624
A
HOH
337
6
HOH
HOH
625
A
HOH
339
6
HOH
HOH
626
A
HOH
342
6
HOH
HOH
627
A
HOH
343
6
HOH
HOH
628
A
HOH
344
6
HOH
HOH
629
A
HOH
345
6
HOH
HOH
630
A
HOH
346
6
HOH
HOH
631
A
HOH
347
6
HOH
HOH
632
A
HOH
31
6
HOH
HOH
31
P
HOH
43
6
HOH
HOH
43
P
HOH
46
6
HOH
HOH
46
P
HOH
50
6
HOH
HOH
50
P
HOH
69
6
HOH
HOH
69
P
HOH
74
6
HOH
HOH
74
P
HOH
75
6
HOH
HOH
75
P
HOH
91
6
HOH
HOH
91
P
HOH
122
6
HOH
HOH
122
P
HOH
142
6
HOH
HOH
142
P
HOH
154
6
HOH
HOH
154
P
HOH
158
6
HOH
HOH
158
P
HOH
183
6
HOH
HOH
183
P
HOH
185
6
HOH
HOH
185
P
HOH
186
6
HOH
HOH
186
P
HOH
191
6
HOH
HOH
191
P
HOH
199
6
HOH
HOH
199
P
HOH
202
6
HOH
HOH
202
P
HOH
208
6
HOH
HOH
208
P
HOH
213
6
HOH
HOH
213
P
HOH
218
6
HOH
HOH
218
P
HOH
238
6
HOH
HOH
238
P
HOH
240
6
HOH
HOH
240
P
HOH
268
6
HOH
HOH
268
P
HOH
302
6
HOH
HOH
302
P
HOH
323
6
HOH
HOH
323
P
HOH
336
6
HOH
HOH
336
P
HOH
349
6
HOH
HOH
349
P
HOH
373
6
HOH
HOH
373
P
HOH
8
6
HOH
HOH
13
T
HOH
19
6
HOH
HOH
19
T
HOH
23
6
HOH
HOH
23
T
HOH
27
6
HOH
HOH
27
T
HOH
40
6
HOH
HOH
40
T
HOH
54
6
HOH
HOH
54
T
HOH
55
6
HOH
HOH
55
T
HOH
57
6
HOH
HOH
57
T
HOH
58
6
HOH
HOH
58
T
HOH
59
6
HOH
HOH
59
T
HOH
72
6
HOH
HOH
72
T
HOH
73
6
HOH
HOH
73
T
HOH
84
6
HOH
HOH
84
T
HOH
104
6
HOH
HOH
104
T
HOH
121
6
HOH
HOH
121
T
HOH
132
6
HOH
HOH
132
T
HOH
137
6
HOH
HOH
137
T
HOH
140
6
HOH
HOH
140
T
HOH
147
6
HOH
HOH
147
T
HOH
148
6
HOH
HOH
148
T
HOH
150
6
HOH
HOH
150
T
HOH
152
6
HOH
HOH
152
T
HOH
161
6
HOH
HOH
161
T
HOH
171
6
HOH
HOH
171
T
HOH
201
6
HOH
HOH
201
T
HOH
205
6
HOH
HOH
205
T
HOH
217
6
HOH
HOH
217
T
HOH
223
6
HOH
HOH
223
T
HOH
237
6
HOH
HOH
237
T
HOH
250
6
HOH
HOH
250
T
HOH
294
6
HOH
HOH
294
T
HOH
298
6
HOH
HOH
298
T
HOH
301
6
HOH
HOH
301
T
HOH
305
6
HOH
HOH
305
T
HOH
314
6
HOH
HOH
314
T
HOH
316
6
HOH
HOH
316
T
HOH
327
6
HOH
HOH
327
T
HOH
340
6
HOH
HOH
340
T
HOH
371
6
HOH
HOH
371
T
HOH
372
6
HOH
HOH
372
T
HOH
382
6
HOH
HOH
382
T
HOH
392
6
HOH
HOH
392
T
n
1
-4
A
n
2
-3
A
n
3
-2
A
n
4
-1
A
n
5
0
A
n
6
1
A
n
7
2
A
n
8
3
A
n
9
4
A
n
10
5
A
n
11
6
A
n
12
7
A
n
13
8
A
GLU
9
n
14
GLU
9
A
THR
10
n
15
THR
10
A
LEU
11
n
16
LEU
11
A
ASN
12
n
17
ASN
12
A
GLY
13
n
18
GLY
13
A
GLY
14
n
19
GLY
14
A
ILE
15
n
20
ILE
15
A
THR
16
n
21
THR
16
A
ASP
17
n
22
ASP
17
A
MET
18
n
23
MET
18
A
LEU
19
n
24
LEU
19
A
VAL
20
n
25
VAL
20
A
GLU
21
n
26
GLU
21
A
LEU
22
n
27
LEU
22
A
ALA
23
n
28
ALA
23
A
ASN
24
n
29
ASN
24
A
PHE
25
n
30
PHE
25
A
GLU
26
n
31
GLU
26
A
LYS
27
n
32
LYS
27
A
ASN
28
n
33
ASN
28
A
VAL
29
n
34
VAL
29
A
SER
30
n
35
SER
30
A
GLN
31
n
36
GLN
31
A
ALA
32
n
37
ALA
32
A
ILE
33
n
38
ILE
33
A
HIS
34
n
39
HIS
34
A
LYS
35
n
40
LYS
35
A
TYR
36
n
41
TYR
36
A
ASN
37
n
42
ASN
37
A
ALA
38
n
43
ALA
38
A
TYR
39
n
44
TYR
39
A
ARG
40
n
45
ARG
40
A
LYS
41
n
46
LYS
41
A
ALA
42
n
47
ALA
42
A
ALA
43
n
48
ALA
43
A
SER
44
n
49
SER
44
A
VAL
45
n
50
VAL
45
A
ILE
46
n
51
ILE
46
A
ALA
47
n
52
ALA
47
A
LYS
48
n
53
LYS
48
A
TYR
49
n
54
TYR
49
A
PRO
50
n
55
PRO
50
A
HIS
51
n
56
HIS
51
A
LYS
52
n
57
LYS
52
A
ILE
53
n
58
ILE
53
A
LYS
54
n
59
LYS
54
A
SER
55
n
60
SER
55
A
GLY
56
n
61
GLY
56
A
ALA
57
n
62
ALA
57
A
GLU
58
n
63
GLU
58
A
ALA
59
n
64
ALA
59
A
LYS
60
n
65
LYS
60
A
LYS
61
n
66
LYS
61
A
LEU
62
n
67
LEU
62
A
PRO
63
n
68
PRO
63
A
GLY
64
n
69
GLY
64
A
VAL
65
n
70
VAL
65
A
GLY
66
n
71
GLY
66
A
THR
67
n
72
THR
67
A
LYS
68
n
73
LYS
68
A
ILE
69
n
74
ILE
69
A
ALA
70
n
75
ALA
70
A
GLU
71
n
76
GLU
71
A
LYS
72
n
77
LYS
72
A
ILE
73
n
78
ILE
73
A
ASP
74
n
79
ASP
74
A
GLU
75
n
80
GLU
75
A
PHE
76
n
81
PHE
76
A
LEU
77
n
82
LEU
77
A
ALA
78
n
83
ALA
78
A
THR
79
n
84
THR
79
A
GLY
80
n
85
GLY
80
A
LYS
81
n
86
LYS
81
A
LEU
82
n
87
LEU
82
A
ARG
83
n
88
ARG
83
A
LYS
84
n
89
LYS
84
A
LEU
85
n
90
LEU
85
A
GLU
86
n
91
GLU
86
A
LYS
87
n
92
LYS
87
A
ILE
88
n
93
ILE
88
A
ARG
89
n
94
ARG
89
A
GLN
90
n
95
GLN
90
A
ASP
91
n
96
ASP
91
A
ASP
92
n
97
ASP
92
A
THR
93
n
98
THR
93
A
SER
94
n
99
SER
94
A
SER
95
n
100
SER
95
A
SER
96
n
101
SER
96
A
ILE
97
n
102
ILE
97
A
ASN
98
n
103
ASN
98
A
PHE
99
n
104
PHE
99
A
LEU
100
n
105
LEU
100
A
THR
101
n
106
THR
101
A
ARG
102
n
107
ARG
102
A
VAL
103
n
108
VAL
103
A
THR
104
n
109
THR
104
A
GLY
105
n
110
GLY
105
A
ILE
106
n
111
ILE
106
A
GLY
107
n
112
GLY
107
A
PRO
108
n
113
PRO
108
A
SER
109
n
114
SER
109
A
ALA
110
n
115
ALA
110
A
ALA
111
n
116
ALA
111
A
ARG
112
n
117
ARG
112
A
LYS
113
n
118
LYS
113
A
LEU
114
n
119
LEU
114
A
VAL
115
n
120
VAL
115
A
ASP
116
n
121
ASP
116
A
GLU
117
n
122
GLU
117
A
GLY
118
n
123
GLY
118
A
ILE
119
n
124
ILE
119
A
LYS
120
n
125
LYS
120
A
THR
121
n
126
THR
121
A
LEU
122
n
127
LEU
122
A
GLU
123
n
128
GLU
123
A
ASP
124
n
129
ASP
124
A
LEU
125
n
130
LEU
125
A
ARG
126
n
131
ARG
126
A
LYS
127
n
132
LYS
127
A
ASN
128
n
133
ASN
128
A
GLU
129
n
134
GLU
129
A
ASP
130
n
135
ASP
130
A
LYS
131
n
136
LYS
131
A
LEU
132
n
137
LEU
132
A
ASN
133
n
138
ASN
133
A
HIS
134
n
139
HIS
134
A
HIS
135
n
140
HIS
135
A
GLN
136
n
141
GLN
136
A
ARG
137
n
142
ARG
137
A
ILE
138
n
143
ILE
138
A
GLY
139
n
144
GLY
139
A
LEU
140
n
145
LEU
140
A
LYS
141
n
146
LYS
141
A
TYR
142
n
147
TYR
142
A
PHE
143
n
148
PHE
143
A
GLU
144
n
149
GLU
144
A
ASP
145
n
150
ASP
145
A
PHE
146
n
151
PHE
146
A
GLU
147
n
152
GLU
147
A
LYS
148
n
153
LYS
148
A
ARG
149
n
154
ARG
149
A
ILE
150
n
155
ILE
150
A
PRO
151
n
156
PRO
151
A
ARG
152
n
157
ARG
152
A
GLU
153
n
158
GLU
153
A
GLU
154
n
159
GLU
154
A
MET
155
n
160
MET
155
A
LEU
156
n
161
LEU
156
A
GLN
157
n
162
GLN
157
A
MET
158
n
163
MET
158
A
GLN
159
n
164
GLN
159
A
ASP
160
n
165
ASP
160
A
ILE
161
n
166
ILE
161
A
VAL
162
n
167
VAL
162
A
LEU
163
n
168
LEU
163
A
ASN
164
n
169
ASN
164
A
GLU
165
n
170
GLU
165
A
VAL
166
n
171
VAL
166
A
LYS
167
n
172
LYS
167
A
LYS
168
n
173
LYS
168
A
LEU
169
n
174
LEU
169
A
ASP
170
n
175
ASP
170
A
PRO
171
n
176
PRO
171
A
GLU
172
n
177
GLU
172
A
TYR
173
n
178
TYR
173
A
ILE
174
n
179
ILE
174
A
ALA
175
n
180
ALA
175
A
THR
176
n
181
THR
176
A
VAL
177
n
182
VAL
177
A
CYS
178
n
183
CYS
178
A
GLY
179
n
184
GLY
179
A
SER
180
n
185
SER
180
A
PHE
181
n
186
PHE
181
A
ARG
182
n
187
ARG
182
A
ARG
183
n
188
ARG
183
A
GLY
184
n
189
GLY
184
A
ALA
185
n
190
ALA
185
A
GLU
186
n
191
GLU
186
A
SER
187
n
192
SER
187
A
SER
188
n
193
SER
188
A
GLY
189
n
194
GLY
189
A
ASP
190
n
195
ASP
190
A
MET
191
n
196
MET
191
A
ASP
192
n
197
ASP
192
A
VAL
193
n
198
VAL
193
A
LEU
194
n
199
LEU
194
A
LEU
195
n
200
LEU
195
A
THR
196
n
201
THR
196
A
HIS
197
n
202
HIS
197
A
PRO
198
n
203
PRO
198
A
ASN
199
n
204
ASN
199
A
PHE
200
n
205
PHE
200
A
THR
201
n
206
THR
201
A
SER
202
n
207
SER
202
A
GLU
203
n
208
GLU
203
A
SER
204
n
209
SER
204
A
SER
205
n
210
SER
205
A
LYS
206
n
211
LYS
206
A
GLN
207
n
212
GLN
207
A
PRO
208
n
213
PRO
208
A
LYS
209
n
214
LYS
209
A
LEU
210
n
215
LEU
210
A
LEU
211
n
216
LEU
211
A
HIS
212
n
217
HIS
212
A
ARG
213
n
218
ARG
213
A
VAL
214
n
219
VAL
214
A
VAL
215
n
220
VAL
215
A
GLU
216
n
221
GLU
216
A
GLN
217
n
222
GLN
217
A
LEU
218
n
223
LEU
218
A
GLN
219
n
224
GLN
219
A
LYS
220
n
225
LYS
220
A
VAL
221
n
226
VAL
221
A
ARG
222
n
227
ARG
222
A
PHE
223
n
228
PHE
223
A
ILE
224
n
229
ILE
224
A
THR
225
n
230
THR
225
A
ASP
226
n
231
ASP
226
A
THR
227
n
232
THR
227
A
LEU
228
n
233
LEU
228
A
SER
229
n
234
SER
229
A
LYS
230
n
235
LYS
230
A
GLY
231
n
236
GLY
231
A
GLU
232
n
237
GLU
232
A
THR
233
n
238
THR
233
A
LYS
234
n
239
LYS
234
A
PHE
235
n
240
PHE
235
A
MET
236
n
241
MET
236
A
GLY
237
n
242
GLY
237
A
VAL
238
n
243
VAL
238
A
CYS
239
n
244
CYS
239
A
GLN
240
n
245
GLN
240
A
LEU
241
n
246
LEU
241
A
PRO
242
n
247
PRO
242
A
SER
243
n
248
SER
243
A
GLU
244
n
249
GLU
244
A
ASN
245
n
250
ASN
245
A
ASP
246
n
251
ASP
246
A
GLU
247
n
252
GLU
247
A
ASN
248
n
253
ASN
248
A
GLU
249
n
254
GLU
249
A
TYR
250
n
255
TYR
250
A
PRO
251
n
256
PRO
251
A
HIS
252
n
257
HIS
252
A
ARG
253
n
258
ARG
253
A
ARG
254
n
259
ARG
254
A
ILE
255
n
260
ILE
255
A
ASP
256
n
261
ASP
256
A
ILE
257
n
262
ILE
257
A
ARG
258
n
263
ARG
258
A
LEU
259
n
264
LEU
259
A
ILE
260
n
265
ILE
260
A
PRO
261
n
266
PRO
261
A
LYS
262
n
267
LYS
262
A
ASP
263
n
268
ASP
263
A
GLN
264
n
269
GLN
264
A
TYR
265
n
270
TYR
265
A
TYR
266
n
271
TYR
266
A
CYS
267
n
272
CYS
267
A
GLY
268
n
273
GLY
268
A
VAL
269
n
274
VAL
269
A
LEU
270
n
275
LEU
270
A
TYR
271
n
276
TYR
271
A
PHE
272
n
277
PHE
272
A
THR
273
n
278
THR
273
A
GLY
274
n
279
GLY
274
A
SER
275
n
280
SER
275
A
ASP
276
n
281
ASP
276
A
ILE
277
n
282
ILE
277
A
PHE
278
n
283
PHE
278
A
ASN
279
n
284
ASN
279
A
LYS
280
n
285
LYS
280
A
ASN
281
n
286
ASN
281
A
MET
282
n
287
MET
282
A
ARG
283
n
288
ARG
283
A
ALA
284
n
289
ALA
284
A
HIS
285
n
290
HIS
285
A
ALA
286
n
291
ALA
286
A
LEU
287
n
292
LEU
287
A
GLU
288
n
293
GLU
288
A
LYS
289
n
294
LYS
289
A
GLY
290
n
295
GLY
290
A
PHE
291
n
296
PHE
291
A
THR
292
n
297
THR
292
A
ILE
293
n
298
ILE
293
A
ASN
294
n
299
ASN
294
A
GLU
295
n
300
GLU
295
A
TYR
296
n
301
TYR
296
A
THR
297
n
302
THR
297
A
ILE
298
n
303
ILE
298
A
ARG
299
n
304
ARG
299
A
PRO
300
n
305
PRO
300
A
LEU
301
n
306
LEU
301
A
GLY
302
n
307
GLY
302
A
VAL
303
n
308
VAL
303
A
THR
304
n
309
THR
304
A
GLY
305
n
310
GLY
305
A
VAL
306
n
311
VAL
306
A
ALA
307
n
312
ALA
307
A
GLY
308
n
313
GLY
308
A
GLU
309
n
314
GLU
309
A
PRO
310
n
315
PRO
310
A
LEU
311
n
316
LEU
311
A
PRO
312
n
317
PRO
312
A
VAL
313
n
318
VAL
313
A
ASP
314
n
319
ASP
314
A
SER
315
n
320
SER
315
A
GLU
316
n
321
GLU
316
A
GLN
317
n
322
GLN
317
A
ASP
318
n
323
ASP
318
A
ILE
319
n
324
ILE
319
A
PHE
320
n
325
PHE
320
A
ASP
321
n
326
ASP
321
A
TYR
322
n
327
TYR
322
A
ILE
323
n
328
ILE
323
A
GLN
324
n
329
GLN
324
A
TRP
325
n
330
TRP
325
A
ARG
326
n
331
ARG
326
A
TYR
327
n
332
TYR
327
A
ARG
328
n
333
ARG
328
A
GLU
329
n
334
GLU
329
A
PRO
330
n
335
PRO
330
A
LYS
331
n
336
LYS
331
A
ASP
332
n
337
ASP
332
A
ARG
333
n
338
ARG
333
A
SER
334
n
339
SER
334
A
GLU
335
n
340
GLU
335
A
DA
0
n
1
DA
0
P
DT
1
n
2
DT
1
P
DG
2
n
3
DG
2
P
DT
3
n
4
DT
3
P
DG
4
n
5
DG
4
P
DA
5
n
6
DA
5
P
DG
6
n
7
DG
6
P
DT
7
n
8
DT
7
P
DC
1
n
1
DC
1
T
DA
2
n
2
DA
2
T
DA
3
n
3
DA
3
T
DA
4
n
4
DA
4
T
DC
5
n
5
DC
5
T
DT
6
n
6
DT
6
T
DC
7
n
7
DC
7
T
DA
8
n
8
DA
8
T
DC
9
n
9
DC
9
T
DA
10
n
10
DA
10
T
DT
11
n
11
DT
11
T
DA
12
n
12
DA
12
T
1.4640
1.5349
1.2935
3.8351
-1.0800
3.7986
-0.0164
0.0871
0.1726
0.0207
-0.0230
-0.3770
0.0997
0.2427
-0.1016
0.0256
0.1945
0.0545
0.1583
0.0651
0.1759
refined
-3.0748
10.5192
-3.9569
X-RAY DIFFRACTION
1.6100
0.2595
0.2903
0.3752
0.1728
0.2246
0.0051
-0.1166
0.0050
0.0640
0.0339
-0.0822
0.0416
-0.0575
0.0111
-0.0083
-0.0085
0.0128
0.1653
0.1096
0.0510
refined
9.3875
2.5730
10.8390
X-RAY DIFFRACTION
2.4700
0.1375
-1.2076
0.9535
-0.1803
3.1840
-0.1260
0.1460
-0.2128
0.0200
-0.0498
-0.0387
0.2865
0.2122
0.1275
0.2488
0.0912
0.0357
0.0875
-0.0167
0.0602
refined
-0.1176
-8.0894
-16.0998
X-RAY DIFFRACTION
P
0
P
7
X-RAY DIFFRACTION
1
( CHAIN P AND ( RESID 0:7 OR RESID 31:373 ) ) OR ( CHAIN T AND ( RESID 1:12 OR RESID 13:392 ) )
P
31
P
373
X-RAY DIFFRACTION
1
( CHAIN P AND ( RESID 0:7 OR RESID 31:373 ) ) OR ( CHAIN T AND ( RESID 1:12 OR RESID 13:392 ) )
T
1
T
12
X-RAY DIFFRACTION
1
( CHAIN P AND ( RESID 0:7 OR RESID 31:373 ) ) OR ( CHAIN T AND ( RESID 1:12 OR RESID 13:392 ) )
T
13
T
392
X-RAY DIFFRACTION
1
( CHAIN P AND ( RESID 0:7 OR RESID 31:373 ) ) OR ( CHAIN T AND ( RESID 1:12 OR RESID 13:392 ) )
A
9
A
148
X-RAY DIFFRACTION
2
( CHAIN A AND RESID 9:148 )
A
149
A
335
X-RAY DIFFRACTION
3
( CHAIN A AND RESID 149:335 )
author_and_software_defined_assembly
PISA
3
trimeric
3850
-117
19930
A
SER
229
A
OG
SER
234
1_555
A
NA
343
K
NA
NA
1_555
A
LYS
234
A
O
LYS
239
1_555
132.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
150
A
N
ILE
155
A
O
SER
188
A
O
SER
193
A
N
THR
176
A
N
THR
181
A
O
LEU
194
A
O
LEU
199
A
N
LEU
195
A
N
LEU
200
A
O
ARG
258
A
O
ARG
263
A
O
ARG
253
A
O
ARG
258
A
N
CYS
239
A
N
CYS
244
A
O
MET
236
A
O
MET
241
A
N
SER
229
A
N
SER
234
A
N
THR
292
A
N
THR
297
A
O
ARG
299
A
O
ARG
304
1
P
O3'
DT
7
B
O3'
DT
8
1
Y
1
T
C5'
DA
12
C
C5'
DA
12
1
Y
1
T
C4'
DA
12
C
C4'
DA
12
1
Y
1
T
O4'
DA
12
C
O4'
DA
12
1
Y
1
T
C3'
DA
12
C
C3'
DA
12
1
Y
1
T
O3'
DA
12
C
O3'
DA
12
1
Y
1
T
C2'
DA
12
C
C2'
DA
12
1
Y
1
T
C1'
DA
12
C
C1'
DA
12
1
Y
1
T
N9
DA
12
C
N9
DA
12
1
Y
1
T
C8
DA
12
C
C8
DA
12
1
Y
1
T
N7
DA
12
C
N7
DA
12
1
Y
1
T
C5
DA
12
C
C5
DA
12
1
Y
1
T
C6
DA
12
C
C6
DA
12
1
Y
1
T
N6
DA
12
C
N6
DA
12
1
Y
1
T
N1
DA
12
C
N1
DA
12
1
Y
1
T
C2
DA
12
C
C2
DA
12
1
Y
1
T
N3
DA
12
C
N3
DA
12
1
Y
1
T
C4
DA
12
C
C4
DA
12
1
Y
1
A
MET
-4
A
MET
1
1
Y
1
A
GLY
-3
A
GLY
2
1
Y
1
A
HIS
-2
A
HIS
3
1
Y
1
A
HIS
-1
A
HIS
4
1
Y
1
A
HIS
0
A
HIS
5
1
Y
1
A
HIS
1
A
HIS
6
1
Y
1
A
HIS
2
A
HIS
7
1
Y
1
A
HIS
3
A
HIS
8
1
Y
1
A
ARG
4
A
ARG
9
1
Y
1
A
LYS
5
A
LYS
10
1
Y
1
A
ALA
6
A
ALA
11
1
Y
1
A
PRO
7
A
PRO
12
1
Y
1
A
GLN
8
A
GLN
13
1
Y
1
A
A
O
O
HOH
HOH
615
617
1.84
1
T
T
O
O
HOH
HOH
298
314
1.85
1
A
A
NH2
O
ARG
HOH
283
521
1.86
1
A
A
O
O
HOH
HOH
477
564
1.87
1
T
T
O
O
HOH
HOH
58
59
1.88
1
A
A
O
O
HOH
HOH
554
563
1.90
1
A
T
O
O
HOH
HOH
460
305
1.95
1
A
A
O
O
HOH
HOH
486
556
1.97
1
A
A
OG1
O
THR
HOH
233
364
2.00
1
A
A
OD2
O
ASP
HOH
91
624
2.02
1
A
A
NZ
O
LYS
HOH
52
416
2.02
1
A
A
OD1
O
ASP
HOH
74
604
2.04
1
T
T
N3
O
DA
HOH
2
372
2.05
1
A
A
O
O
HOH
HOH
535
561
2.06
1
P
P
OP2
O
DT
HOH
3
75
2.13
1
T
T
O4
O
DT
HOH
11
55
2.14
1
A
A
O
O
HOH
HOH
359
583
2.15
1
A
T
O
O
HOH
HOH
428
371
2.19
1
A
A
O
O
HOH
HOH
436
457
2.19
1
-4.80
0.70
108.00
103.20
P
P
P
O4'
C1'
N1
DT
DT
DT
1
1
1
N
1
-4.81
0.40
104.50
99.69
P
P
P
O4'
C4'
C3'
DG
DG
DG
4
4
4
N
1
2.62
0.30
108.30
110.92
P
P
P
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
1.80
0.30
108.30
110.10
T
T
T
O4'
C1'
N9
DA
DA
DA
3
3
3
N
1
4.00
0.30
108.30
112.30
T
T
T
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
3.64
0.30
108.30
111.94
T
T
T
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
-4.40
0.70
108.00
103.60
T
T
T
O4'
C1'
N9
DA
DA
DA
8
8
8
N
1
4.07
0.30
108.30
112.37
T
T
T
O4'
C1'
N9
DA
DA
DA
10
10
10
N
1
P
P
P
O5'
DA
DA
0
0
0.070
0.010
1.593
1.663
N
1
T
T
O3'
C3'
DC
DC
5
5
0.083
0.013
1.435
1.518
N
1
T
T
O3'
C3'
DA
DA
10
10
0.084
0.013
1.435
1.519
N
1
A
A
O
O
HOH
HOH
503
505
2.11
1_555
1_655
1
A
THR
10
79.81
-81.14
1
A
VAL
29
-128.23
-54.65
1
A
CYS
178
-109.63
-146.97
1
A
ASP
190
-160.51
-168.32
1
A
LYS
206
60.30
109.65
1
A
GLU
244
-57.42
-89.51
1
A
ASP
246
51.98
-119.24
1
A
GLU
247
42.52
-157.63
1
A
ASN
294
-117.68
-158.34
1
A
GLU
309
59.99
102.87
1
A
ASP
314
-142.29
15.98
1
A
ARG
333
-102.95
41.12
21.8261
0.0000
0.0000
37.5600
-0.0000
24.3896
0.2427
0.2114
0.22
0.2129
2.250
17.018
954
20979
20979
4.55
0.72
Random
1
0.07
MOLECULAR REPLACEMENT
28.74
0.86
1.10
ML
FLAT BULK SOLVENT MODEL
7.123
0.322
2.250
17.018
356
3393
12
392
2633
0.009
3128
1.325
4293
18.769
1233
0.084
470
0.004
494
0.3804
0.3030
2.5163
114
2644
79.00
0.3467
0.2735
2.7099
142
2907
87.00
0.3038
0.2504
2.9813
143
3104
92.00
0.2478
0.2172
3.4096
146
3212
95.00
0.1967
0.1889
4.2844
161
3229
94.00
0.2073
0.1726
17.0180
176
3512
99.00
2.25
17.018
3V7J
26316
25465
0.0
0.0
1
4.8
95.7
2.25
2.32
2.03
1
4.2
94.7
data collection
HKL-2000
model building
PHENIX
(phenix.refine: 1.7.2_869)
refinement
PHENIX
(phenix.refine: 1.7.2_869)
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
PHENIX
1.7.2_869
Co-crystal structure of Wild Type Rat polymerase beta: Enzyme-DNA binary complex
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
A
ASN
12
A
ASN
17
HELX_P
A
VAL
29
A
VAL
34
1
1
18
A
ALA
32
A
ALA
37
HELX_P
A
LYS
48
A
LYS
53
1
2
17
A
SER
55
A
SER
60
HELX_P
A
LYS
61
A
LYS
66
1
3
7
A
GLY
66
A
GLY
71
HELX_P
A
GLY
80
A
GLY
85
1
4
15
A
LEU
82
A
LEU
87
HELX_P
A
ASP
91
A
ASP
96
1
5
10
A
ASP
91
A
ASP
96
HELX_P
A
THR
101
A
THR
106
1
6
11
A
GLY
107
A
GLY
112
HELX_P
A
GLU
117
A
GLU
122
1
7
11
A
THR
121
A
THR
126
HELX_P
A
LYS
127
A
LYS
132
1
8
7
A
ASN
128
A
ASN
133
HELX_P
A
LEU
132
A
LEU
137
5
9
5
A
ASN
133
A
ASN
138
HELX_P
A
TYR
142
A
TYR
147
1
10
10
A
TYR
142
A
TYR
147
HELX_P
A
LYS
148
A
LYS
153
1
11
7
A
ARG
152
A
ARG
157
HELX_P
A
ASP
170
A
ASP
175
1
12
19
A
CYS
178
A
CYS
183
HELX_P
A
ARG
183
A
ARG
188
1
13
6
A
PRO
208
A
PRO
213
HELX_P
A
VAL
221
A
VAL
226
1
14
14
A
PRO
261
A
PRO
266
HELX_P
A
ASP
263
A
ASP
268
5
15
3
A
GLN
264
A
GLN
269
HELX_P
A
PHE
272
A
PHE
277
1
16
9
A
SER
275
A
SER
280
HELX_P
A
GLY
290
A
GLY
295
1
17
16
A
SER
315
A
SER
320
HELX_P
A
ILE
323
A
ILE
328
1
18
9
A
GLU
329
A
GLU
334
HELX_P
A
ARG
333
A
ARG
338
5
19
5
metalc
3.140
A
TYR
39
A
OH
TYR
44
1_555
A
NA
340
H
NA
NA
1_555
metalc
3.160
A
SER
229
A
OG
SER
234
1_555
A
NA
343
K
NA
NA
1_555
metalc
3.193
A
LYS
234
A
O
LYS
239
1_555
A
NA
343
K
NA
NA
1_555
metalc
3.035
A
NA
336
D
NA
NA
1_555
A
HOH
491
P
O
HOH
1_555
hydrog
WATSON-CRICK
P
DA
0
B
N1
DA
1
1_555
T
DT
11
C
N3
DT
11
1_555
hydrog
WATSON-CRICK
P
DA
0
B
N6
DA
1
1_555
T
DT
11
C
O4
DT
11
1_555
hydrog
WATSON-CRICK
P
DT
1
B
N3
DT
2
1_555
T
DA
10
C
N1
DA
10
1_555
hydrog
WATSON-CRICK
P
DT
1
B
O4
DT
2
1_555
T
DA
10
C
N6
DA
10
1_555
hydrog
WATSON-CRICK
P
DG
2
B
N1
DG
3
1_555
T
DC
9
C
N3
DC
9
1_555
hydrog
WATSON-CRICK
P
DG
2
B
N2
DG
3
1_555
T
DC
9
C
O2
DC
9
1_555
hydrog
WATSON-CRICK
P
DG
2
B
O6
DG
3
1_555
T
DC
9
C
N4
DC
9
1_555
hydrog
WATSON-CRICK
P
DT
3
B
N3
DT
4
1_555
T
DA
8
C
N1
DA
8
1_555
hydrog
WATSON-CRICK
P
DT
3
B
O4
DT
4
1_555
T
DA
8
C
N6
DA
8
1_555
hydrog
WATSON-CRICK
P
DG
4
B
N1
DG
5
1_555
T
DC
7
C
N3
DC
7
1_555
hydrog
WATSON-CRICK
P
DG
4
B
N2
DG
5
1_555
T
DC
7
C
O2
DC
7
1_555
hydrog
WATSON-CRICK
P
DG
4
B
O6
DG
5
1_555
T
DC
7
C
N4
DC
7
1_555
hydrog
WATSON-CRICK
P
DA
5
B
N1
DA
6
1_555
T
DT
6
C
N3
DT
6
1_555
hydrog
WATSON-CRICK
P
DA
5
B
N6
DA
6
1_555
T
DT
6
C
O4
DT
6
1_555
hydrog
WATSON-CRICK
P
DG
6
B
N1
DG
7
1_555
T
DC
5
C
N3
DC
5
1_555
hydrog
WATSON-CRICK
P
DG
6
B
N2
DG
7
1_555
T
DC
5
C
O2
DC
5
1_555
hydrog
WATSON-CRICK
P
DG
6
B
O6
DG
7
1_555
T
DC
5
C
N4
DC
5
1_555
hydrog
WATSON-CRICK
P
DT
7
B
N3
DT
8
1_555
T
DA
4
C
N1
DA
4
1_555
hydrog
WATSON-CRICK
P
DT
7
B
O4
DT
8
1_555
T
DA
4
C
N6
DA
4
1_555
Transferase/DNA
Protein-DNA complex, repair polymerase, Transferase-DNA complex
A
GLU
9
A
GLU
14
1
A
THR
10
A
THR
15
-1.15
A
GLY
274
A
GLY
279
1
A
SER
275
A
SER
280
1.91
DPOLB_RAT
UNP
1
4
P06766
RKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLR
KLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVL
NEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPS
ENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYI
QWRYREPKDRSE
3V7J
PDB
2
3V7J
3V7J
PDB
3
3V7J
4
335
3V7J
4
335
P06766
A
1
9
340
0
7
3V7J
0
7
3V7J
P
2
1
8
1
12
3V7J
1
12
3V7J
T
3
1
12
1
initiating methionine
MET
-4
3V7J
A
P06766
UNP
1
1
expression tag
GLY
-3
3V7J
A
P06766
UNP
2
1
expression tag
HIS
-2
3V7J
A
P06766
UNP
3
1
expression tag
HIS
-1
3V7J
A
P06766
UNP
4
1
expression tag
HIS
0
3V7J
A
P06766
UNP
5
1
expression tag
HIS
1
3V7J
A
P06766
UNP
6
1
expression tag
HIS
2
3V7J
A
P06766
UNP
7
1
expression tag
HIS
3
3V7J
A
P06766
UNP
8
2
5
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
150
A
ILE
155
A
PRO
151
A
PRO
156
A
SER
187
A
SER
192
A
SER
188
A
SER
193
A
ILE
174
A
ILE
179
A
VAL
177
A
VAL
182
A
MET
191
A
MET
196
A
THR
196
A
THR
201
A
ARG
253
A
ARG
258
A
LEU
259
A
LEU
264
A
LYS
234
A
LYS
239
A
CYS
239
A
CYS
244
A
ILE
224
A
ILE
229
A
LYS
230
A
LYS
235
A
PHE
291
A
PHE
296
A
ILE
293
A
ILE
298
A
ILE
298
A
ILE
303
A
PRO
300
A
PRO
305
BINDING SITE FOR RESIDUE NA A 336
A
NA
336
Software
2
BINDING SITE FOR RESIDUE NA A 337
A
NA
337
Software
1
BINDING SITE FOR RESIDUE NA A 338
A
NA
338
Software
4
BINDING SITE FOR RESIDUE NA A 340
A
NA
340
Software
4
BINDING SITE FOR RESIDUE NA A 342
A
NA
342
Software
4
BINDING SITE FOR RESIDUE NA A 343
A
NA
343
Software
4
BINDING SITE FOR RESIDUE CL A 344
A
CL
344
Software
4
BINDING SITE FOR RESIDUE CL A 345
A
CL
345
Software
6
BINDING SITE FOR RESIDUE CL A 346
A
CL
346
Software
1
BINDING SITE FOR RESIDUE CL A 347
A
CL
347
Software
1
A
ASP
190
A
ASP
195
2
1_555
A
HOH
491
P
HOH
2
1_555
A
ASP
130
A
ASP
135
1
1_555
A
THR
101
A
THR
106
4
1_555
A
ARG
102
A
ARG
107
4
1_555
A
THR
104
A
THR
109
4
1_555
P
DG
6
B
DG
7
4
1_555
A
TYR
39
A
TYR
44
4
1_555
A
LYS
68
A
LYS
73
4
1_555
A
LYS
72
A
LYS
77
4
1_555
P
DA
0
B
DA
1
4
4_555
A
ASN
28
A
ASN
33
4
1_555
A
VAL
29
A
VAL
34
4
1_555
A
GLN
31
A
GLN
36
4
1_555
A
PRO
108
A
PRO
113
4
1_555
A
SER
229
A
SER
234
4
1_555
A
LYS
234
A
LYS
239
4
1_555
A
MET
236
A
MET
241
4
1_555
T
DC
7
C
DC
7
4
1_555
A
LEU
270
A
LEU
275
4
1_555
A
THR
273
A
THR
278
4
1_555
A
GLY
274
A
GLY
279
4
1_555
A
ARG
333
A
ARG
338
4
1_555
A
ARG
152
A
ARG
157
6
1_555
A
MET
155
A
MET
160
6
1_555
A
PHE
181
A
PHE
186
6
1_555
A
ALA
185
A
ALA
190
6
1_555
A
SER
187
A
SER
192
6
1_555
A
SER
188
A
SER
193
6
1_555
A
GLU
117
A
GLU
122
1
1_555
A
LEU
132
A
LEU
137
1
1_555
19
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