0.015993 0.000000 0.000000 0.000000 0.013218 0.000000 0.000000 0.000000 0.008457 0.00000 0.00000 0.00000 Gelin, M. Poncet-Montange, G. Assairi, L. Morellato, L. Huteau, V. Dugu, L. Dussurget, O. Pochet, S. Labesse, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 62.528 75.654 118.241 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H8 O7 192.124 CITRIC ACID non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C10 H11 Br N8 O3 371.150 5'-azido-8-bromo-5'-deoxyadenosine non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N O N 76 N O N 77 N C N 78 N C N 79 N O N 80 N C N 81 N C N 82 N O N 83 N O N 84 N C N 85 N O N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 R C N 97 N C N 98 N O N 99 N C N 100 N S N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N N N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N N N 130 S C N 131 N C N 132 N O N 133 N C N 134 N C N 135 N C N 136 N O N 137 N O N 138 N O N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N N N 149 N C N 150 N C N 151 N O N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 N C Y 163 N C Y 164 N N Y 165 N C Y 166 N C Y 167 N N N 168 N O N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N O N 180 N H N 181 N H N 182 N N N 183 S C N 184 N C N 185 N O N 186 S C N 187 N C N 188 N C N 189 N C N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 N C N 209 N C N 210 N C N 211 N C N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N C N 234 N N N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N S N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 N C Y 276 N C Y 277 N C Y 278 N C Y 279 N C Y 280 N C Y 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C N 299 N C N 300 N C N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C N 316 N O N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 R C N 330 N O N 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C Y 347 N C Y 348 N C Y 349 N C Y 350 N N Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C N 380 N O N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C N 398 N C N 399 N C N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H Y 412 N N Y 413 N C Y 414 N N Y 415 N C Y 416 N C Y 417 N C N 418 N N Y 419 N N Y 420 N C N 421 N BR Y 422 N N N 423 R C N 424 R C N 425 N O N 426 S C N 427 N O N 428 R C N 429 N C N 430 N O N 431 N N N 432 N N N 433 N N N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing Y 160 N sing Y 161 N doub Y 162 N doub N 163 N sing Y 164 N sing N 165 N sing Y 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing Y 268 N doub Y 269 N sing Y 270 N sing N 271 N sing Y 272 N doub N 273 N sing Y 274 N doub N 275 N sing Y 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing Y 337 N doub Y 338 N sing Y 339 N sing N 340 N sing Y 341 N doub Y 342 N sing Y 343 N sing N 344 N sing Y 345 N sing Y 346 N doub N 347 N sing Y 348 N doub N 349 N sing Y 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing Y 365 N doub Y 366 N sing Y 367 N sing N 368 N sing Y 369 N doub N 370 N sing Y 371 N doub N 372 N sing Y 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N doub N 398 N sing N 399 N sing Y 400 N sing Y 401 N doub Y 402 N doub Y 403 N sing Y 404 N sing N 405 N sing Y 406 N sing Y 407 N doub N 408 N sing N 409 N sing N 410 N sing Y 411 N sing Y 412 N doub N 413 N sing Y 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing UK Structure STRUE6 2005 0969-2126 20 1107 1117 10.1016/j.str.2012.03.024 22608967 Screening and In Situ Synthesis Using Crystals of a NAD Kinase Lead to a Potent Antistaphylococcal Compound. 2012 10.2210/pdb3v8m/pdb pdb_00003v8m 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2009-03-13 ADSC QUANTUM 4 Asymmetric Laue 001 SINGLE WAVELENGTH M x-ray 1 0.93300 1.0 ID14-2 ESRF 0.93300 SYNCHROTRON ESRF BEAMLINE ID14-2 31045.279 Probable inorganic polyphosphate/ATP-NAD kinase 1 2.7.1.23 1 man polymer 371.150 5'-azido-8-bromo-5'-deoxyadenosine 2 syn non-polymer 192.124 CITRIC ACID 1 syn non-polymer 18.015 water 72 nat water Poly(P)/ATP NAD kinase 1 no no MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIEDLEHHHHHH MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIEDLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample ppnK1, lmo0968 1639 Listeria monocytogenes 562 Escherichia coli 1 2.25 45.38 VAPOR DIFFUSION, HANGING DROP 5.0 30 mM sodium bromide, 220 mM potassium citrate, pH 4.8-5.1, glycerol 6%, 15-16% w/v polyethylene glycol 400, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K 291.15 software pdbx_distant_solvent_atoms pdbx_struct_assembly pdbx_struct_assembly_gen pdbx_struct_assembly_prop struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Database references Database references Refinement description Advisory Database references Derived calculations Data collection Database references Derived calculations 1 0 2012-03-14 1 1 2012-06-06 1 2 2012-06-27 1 3 2017-11-08 1 4 2020-06-24 1 5 2024-02-28 _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.value _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2011-12-23 REL REL 1 A O HOH 456 7.29 1 A O HOH 464 7.13 Z8B 5'-azido-8-bromo-5'-deoxyadenosine CIT CITRIC ACID HOH water Z8B 1 2 Z8B Z8B 301 A Z8B 2 2 Z8B Z8B 302 A CIT 1 3 CIT CIT 303 A HOH 1 4 HOH HOH 401 A HOH 2 4 HOH HOH 402 A HOH 3 4 HOH HOH 403 A HOH 4 4 HOH HOH 404 A HOH 5 4 HOH HOH 405 A HOH 6 4 HOH HOH 406 A HOH 7 4 HOH HOH 407 A HOH 8 4 HOH HOH 408 A HOH 9 4 HOH HOH 409 A HOH 10 4 HOH HOH 410 A HOH 12 4 HOH HOH 411 A HOH 13 4 HOH HOH 412 A HOH 14 4 HOH HOH 413 A HOH 16 4 HOH HOH 414 A HOH 18 4 HOH HOH 415 A HOH 20 4 HOH HOH 416 A HOH 23 4 HOH HOH 417 A HOH 25 4 HOH HOH 418 A HOH 26 4 HOH HOH 419 A HOH 27 4 HOH HOH 420 A HOH 28 4 HOH HOH 421 A HOH 30 4 HOH HOH 422 A HOH 33 4 HOH HOH 423 A HOH 34 4 HOH HOH 424 A HOH 36 4 HOH HOH 425 A HOH 37 4 HOH HOH 426 A HOH 38 4 HOH HOH 427 A HOH 40 4 HOH HOH 428 A HOH 42 4 HOH HOH 429 A HOH 44 4 HOH HOH 430 A HOH 45 4 HOH HOH 431 A HOH 49 4 HOH HOH 432 A HOH 52 4 HOH HOH 433 A HOH 53 4 HOH HOH 434 A HOH 57 4 HOH HOH 435 A HOH 62 4 HOH HOH 436 A HOH 64 4 HOH HOH 437 A HOH 65 4 HOH HOH 438 A HOH 67 4 HOH HOH 439 A HOH 68 4 HOH HOH 440 A HOH 69 4 HOH HOH 441 A HOH 70 4 HOH HOH 442 A HOH 71 4 HOH HOH 443 A HOH 72 4 HOH HOH 444 A HOH 73 4 HOH HOH 445 A HOH 74 4 HOH HOH 446 A HOH 75 4 HOH HOH 447 A HOH 76 4 HOH HOH 448 A HOH 77 4 HOH HOH 449 A HOH 78 4 HOH HOH 450 A HOH 79 4 HOH HOH 451 A HOH 80 4 HOH HOH 452 A HOH 81 4 HOH HOH 453 A HOH 82 4 HOH HOH 454 A HOH 83 4 HOH HOH 455 A HOH 84 4 HOH HOH 456 A HOH 85 4 HOH HOH 457 A HOH 86 4 HOH HOH 458 A HOH 87 4 HOH HOH 459 A HOH 88 4 HOH HOH 460 A HOH 89 4 HOH HOH 461 A HOH 90 4 HOH HOH 462 A HOH 92 4 HOH HOH 463 A HOH 93 4 HOH HOH 464 A HOH 95 4 HOH HOH 465 A HOH 96 4 HOH HOH 466 A HOH 97 4 HOH HOH 467 A HOH 98 4 HOH HOH 468 A HOH 99 4 HOH HOH 469 A HOH 100 4 HOH HOH 470 A HOH 101 4 HOH HOH 471 A HOH 102 4 HOH HOH 472 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A TYR 3 n 3 TYR 3 A MET 4 n 4 MET 4 A ILE 5 n 5 ILE 5 A THR 6 n 6 THR 6 A SER 7 n 7 SER 7 A LYS 8 n 8 LYS 8 A GLY 9 n 9 GLY 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A LYS 12 n 12 LYS 12 A SER 13 n 13 SER 13 A ASP 14 n 14 ASP 14 A LEU 15 n 15 LEU 15 A LEU 16 n 16 LEU 16 A ARG 17 n 17 ARG 17 A LEU 18 n 18 LEU 18 A ASN 19 n 19 ASN 19 A MET 20 n 20 MET 20 A ILE 21 n 21 ILE 21 A ALA 22 n 22 ALA 22 A GLY 23 n 23 GLY 23 A PHE 24 n 24 PHE 24 A GLY 25 n 25 GLY 25 A GLU 26 n 26 GLU 26 A TYR 27 n 27 TYR 27 A ASP 28 n 28 ASP 28 A MET 29 n 29 MET 29 A GLU 30 n 30 GLU 30 A TYR 31 n 31 TYR 31 A ASP 32 n 32 ASP 32 A ASP 33 n 33 ASP 33 A VAL 34 n 34 VAL 34 A GLU 35 n 35 GLU 35 A PRO 36 n 36 PRO 36 A GLU 37 n 37 GLU 37 A ILE 38 n 38 ILE 38 A VAL 39 n 39 VAL 39 A ILE 40 n 40 ILE 40 A SER 41 n 41 SER 41 A ILE 42 n 42 ILE 42 A GLY 43 n 43 GLY 43 A GLY 44 n 44 GLY 44 A ASP 45 n 45 ASP 45 A GLY 46 n 46 GLY 46 A THR 47 n 47 THR 47 A PHE 48 n 48 PHE 48 A LEU 49 n 49 LEU 49 A SER 50 n 50 SER 50 A ALA 51 n 51 ALA 51 A PHE 52 n 52 PHE 52 A HIS 53 n 53 HIS 53 A GLN 54 n 54 GLN 54 A TYR 55 n 55 TYR 55 A GLU 56 n 56 GLU 56 A GLU 57 n 57 GLU 57 A ARG 58 n 58 ARG 58 A LEU 59 n 59 LEU 59 A ASP 60 n 60 ASP 60 A GLU 61 n 61 GLU 61 A ILE 62 n 62 ILE 62 A ALA 63 n 63 ALA 63 A PHE 64 n 64 PHE 64 A ILE 65 n 65 ILE 65 A GLY 66 n 66 GLY 66 A ILE 67 n 67 ILE 67 A HIS 68 n 68 HIS 68 A THR 69 n 69 THR 69 A GLY 70 n 70 GLY 70 A HIS 71 n 71 HIS 71 A LEU 72 n 72 LEU 72 A GLY 73 n 73 GLY 73 A PHE 74 n 74 PHE 74 A TYR 75 n 75 TYR 75 A ALA 76 n 76 ALA 76 A ASP 77 n 77 ASP 77 A TRP 78 n 78 TRP 78 A ARG 79 n 79 ARG 79 A PRO 80 n 80 PRO 80 A ALA 81 n 81 ALA 81 A GLU 82 n 82 GLU 82 A ALA 83 n 83 ALA 83 A ASP 84 n 84 ASP 84 A LYS 85 n 85 LYS 85 A LEU 86 n 86 LEU 86 A VAL 87 n 87 VAL 87 A LYS 88 n 88 LYS 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A ALA 91 n 91 ALA 91 A LYS 92 n 92 LYS 92 A n 93 93 A n 94 94 A TYR 95 n 95 TYR 95 A GLN 96 n 96 GLN 96 A LYS 97 n 97 LYS 97 A VAL 98 n 98 VAL 98 A SER 99 n 99 SER 99 A TYR 100 n 100 TYR 100 A PRO 101 n 101 PRO 101 A LEU 102 n 102 LEU 102 A LEU 103 n 103 LEU 103 A LYS 104 n 104 LYS 104 A THR 105 n 105 THR 105 A THR 106 n 106 THR 106 A VAL 107 n 107 VAL 107 A LYS 108 n 108 LYS 108 A TYR 109 n 109 TYR 109 A n 110 110 A n 111 111 A n 112 112 A n 113 113 A LYS 114 n 114 LYS 114 A GLU 115 n 115 GLU 115 A ALA 116 n 116 ALA 116 A THR 117 n 117 THR 117 A TYR 118 n 118 TYR 118 A LEU 119 n 119 LEU 119 A ALA 120 n 120 ALA 120 A LEU 121 n 121 LEU 121 A ASN 122 n 122 ASN 122 A GLU 123 n 123 GLU 123 A SER 124 n 124 SER 124 A THR 125 n 125 THR 125 A VAL 126 n 126 VAL 126 A LYS 127 n 127 LYS 127 A SER 128 n 128 SER 128 A SER 129 n 129 SER 129 A GLY 130 n 130 GLY 130 A GLY 131 n 131 GLY 131 A PRO 132 n 132 PRO 132 A PHE 133 n 133 PHE 133 A VAL 134 n 134 VAL 134 A VAL 135 n 135 VAL 135 A ASP 136 n 136 ASP 136 A VAL 137 n 137 VAL 137 A VAL 138 n 138 VAL 138 A ILE 139 n 139 ILE 139 A ASN 140 n 140 ASN 140 A ASP 141 n 141 ASP 141 A ILE 142 n 142 ILE 142 A HIS 143 n 143 HIS 143 A PHE 144 n 144 PHE 144 A GLU 145 n 145 GLU 145 A ARG 146 n 146 ARG 146 A PHE 147 n 147 PHE 147 A ARG 148 n 148 ARG 148 A GLY 149 n 149 GLY 149 A ASP 150 n 150 ASP 150 A GLY 151 n 151 GLY 151 A LEU 152 n 152 LEU 152 A CYS 153 n 153 CYS 153 A MET 154 n 154 MET 154 A SER 155 n 155 SER 155 A THR 156 n 156 THR 156 A PRO 157 n 157 PRO 157 A SER 158 n 158 SER 158 A GLY 159 n 159 GLY 159 A THR 160 n 160 THR 160 A THR 161 n 161 THR 161 A ALA 162 n 162 ALA 162 A TYR 163 n 163 TYR 163 A ASN 164 n 164 ASN 164 A LYS 165 n 165 LYS 165 A SER 166 n 166 SER 166 A LEU 167 n 167 LEU 167 A GLY 168 n 168 GLY 168 A GLY 169 n 169 GLY 169 A ALA 170 n 170 ALA 170 A LEU 171 n 171 LEU 171 A MET 172 n 172 MET 172 A HIS 173 n 173 HIS 173 A PRO 174 n 174 PRO 174 A SER 175 n 175 SER 175 A ILE 176 n 176 ILE 176 A GLU 177 n 177 GLU 177 A ALA 178 n 178 ALA 178 A MET 179 n 179 MET 179 A GLN 180 n 180 GLN 180 A LEU 181 n 181 LEU 181 A THR 182 n 182 THR 182 A GLU 183 n 183 GLU 183 A MET 184 n 184 MET 184 A ALA 185 n 185 ALA 185 A SER 186 n 186 SER 186 A ILE 187 n 187 ILE 187 A ASN 188 n 188 ASN 188 A ASN 189 n 189 ASN 189 A ARG 190 n 190 ARG 190 A VAL 191 n 191 VAL 191 A TYR 192 n 192 TYR 192 A ARG 193 n 193 ARG 193 A THR 194 n 194 THR 194 A ILE 195 n 195 ILE 195 A GLY 196 n 196 GLY 196 A SER 197 n 197 SER 197 A PRO 198 n 198 PRO 198 A LEU 199 n 199 LEU 199 A VAL 200 n 200 VAL 200 A PHE 201 n 201 PHE 201 A PRO 202 n 202 PRO 202 A LYS 203 n 203 LYS 203 A HIS 204 n 204 HIS 204 A HIS 205 n 205 HIS 205 A VAL 206 n 206 VAL 206 A VAL 207 n 207 VAL 207 A SER 208 n 208 SER 208 A LEU 209 n 209 LEU 209 A GLN 210 n 210 GLN 210 A PRO 211 n 211 PRO 211 A VAL 212 n 212 VAL 212 A ASN 213 n 213 ASN 213 A ASP 214 n 214 ASP 214 A LYS 215 n 215 LYS 215 A ASP 216 n 216 ASP 216 A PHE 217 n 217 PHE 217 A GLN 218 n 218 GLN 218 A ILE 219 n 219 ILE 219 A SER 220 n 220 SER 220 A VAL 221 n 221 VAL 221 A ASP 222 n 222 ASP 222 A HIS 223 n 223 HIS 223 A LEU 224 n 224 LEU 224 A SER 225 n 225 SER 225 A ILE 226 n 226 ILE 226 A LEU 227 n 227 LEU 227 A HIS 228 n 228 HIS 228 A ARG 229 n 229 ARG 229 A ASP 230 n 230 ASP 230 A VAL 231 n 231 VAL 231 A GLN 232 n 232 GLN 232 A GLU 233 n 233 GLU 233 A ILE 234 n 234 ILE 234 A ARG 235 n 235 ARG 235 A TYR 236 n 236 TYR 236 A GLU 237 n 237 GLU 237 A VAL 238 n 238 VAL 238 A SER 239 n 239 SER 239 A ALA 240 n 240 ALA 240 A LYS 241 n 241 LYS 241 A LYS 242 n 242 LYS 242 A ILE 243 n 243 ILE 243 A HIS 244 n 244 HIS 244 A PHE 245 n 245 PHE 245 A ALA 246 n 246 ALA 246 A ARG 247 n 247 ARG 247 A PHE 248 n 248 PHE 248 A ARG 249 n 249 ARG 249 A SER 250 n 250 SER 250 A PHE 251 n 251 PHE 251 A PRO 252 n 252 PRO 252 A PHE 253 n 253 PHE 253 A TRP 254 n 254 TRP 254 A ARG 255 n 255 ARG 255 A ARG 256 n 256 ARG 256 A VAL 257 n 257 VAL 257 A HIS 258 n 258 HIS 258 A ASP 259 n 259 ASP 259 A SER 260 n 260 SER 260 A PHE 261 n 261 PHE 261 A ILE 262 n 262 ILE 262 A GLU 263 n 263 GLU 263 A n 264 264 A n 265 265 A n 266 266 A n 267 267 A n 268 268 A n 269 269 A n 270 270 A n 271 271 A n 272 272 A 2.0653 -0.2369 -0.3661 0.7578 -0.1211 0.2739 0.0162 -0.6343 -0.0835 0.2149 0.0160 0.0686 -0.1750 -0.0596 -0.0133 0.2484 0.0989 0.0498 0.2992 -0.0909 0.0748 refined 13.2817 24.5448 22.4287 X-RAY DIFFRACTION 0.5732 -0.0722 -0.3964 0.4103 -0.0210 1.7648 0.0581 0.0596 0.0193 0.0704 0.0069 0.0283 -0.0374 -0.2256 -0.0558 0.0871 0.0559 0.0119 0.0836 -0.0109 0.0551 refined 19.0350 13.9004 -1.5155 X-RAY DIFFRACTION 0.5732 -0.2555 -0.0758 0.2761 0.0644 0.0593 0.1682 0.1424 -0.0817 -0.1679 -0.0940 -0.0717 -0.0034 0.0284 0.0695 0.0477 0.0890 0.0186 0.0447 -0.0066 0.0297 refined 19.7558 17.4551 5.9518 X-RAY DIFFRACTION 7.1959 0.4663 -0.8195 1.7993 1.6082 3.4171 -0.0414 -0.4119 0.3686 -0.0263 0.0438 0.0906 0.1398 0.1015 0.0192 0.4163 0.2830 -0.0549 0.6228 -0.1424 0.3497 refined 29.6801 24.7817 15.0828 X-RAY DIFFRACTION 3.1922 0.5756 -0.3195 3.7941 0.5916 0.1461 -0.0451 -0.7387 0.0342 0.5958 -0.2612 0.0615 0.5554 0.2715 0.2446 0.4266 -0.0364 0.0004 0.3568 0.0415 0.1955 refined 17.1095 8.9791 10.7377 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 (chain A and resid 1:100) X-RAY DIFFRACTION 2 (chain A and resid 101:264) X-RAY DIFFRACTION 3 (CHAIN A AND RESID 401:472) X-RAY DIFFRACTION 4 (CHAIN A AND RESID 303:303) X-RAY DIFFRACTION 5 (CHAIN A AND RESID 301:302) author_and_software_defined_assembly PISA 4 tetrameric 9670 -51 40130 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -x+1,-y,z crystal symmetry operation 62.5280000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_655 -x+1,y,-z crystal symmetry operation 62.5280000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 x,-y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 30 A O GLU 30 A N TYR 3 A N TYR 3 A N MET 4 A N MET 4 A O ILE 40 A O ILE 40 A N SER 41 A N SER 41 A O ILE 65 A O ILE 65 A O ALA 116 A O ALA 116 A N VAL 107 A N VAL 107 A N VAL 98 A N VAL 98 A O PHE 245 A O PHE 245 A O TYR 236 A O TYR 236 A N VAL 207 A N VAL 207 A O GLN 210 A O GLN 210 A N ASP 136 A N ASP 136 A N VAL 137 A N VAL 137 A O GLU 145 A O GLU 145 A O LEU 199 A O LEU 199 A N LEU 181 A N LEU 181 A O GLN 180 A O GLN 180 A N SER 155 A N SER 155 A O MET 154 A O MET 154 A N SER 124 A N SER 124 A N LYS 127 A N LYS 127 A O GLN 218 A O GLN 218 A N PHE 217 A N PHE 217 A O HIS 228 A O HIS 228 1 A HOH 430 E HOH 1 A HOH 432 E HOH 1 A CG MET 1 A CG MET 1 1 Y 1 A SD MET 1 A SD MET 1 1 Y 1 A CE MET 1 A CE MET 1 1 Y 1 A CG GLU 11 A CG GLU 11 1 Y 1 A CD GLU 11 A CD GLU 11 1 Y 1 A OE1 GLU 11 A OE1 GLU 11 1 Y 1 A OE2 GLU 11 A OE2 GLU 11 1 Y 1 A CG LYS 85 A CG LYS 85 1 Y 1 A CD LYS 85 A CD LYS 85 1 Y 1 A CE LYS 85 A CE LYS 85 1 Y 1 A NZ LYS 85 A NZ LYS 85 1 Y 1 A CB ALA 91 A CB ALA 91 1 Y 1 A CG LYS 114 A CG LYS 114 1 Y 1 A CD LYS 114 A CD LYS 114 1 Y 1 A CE LYS 114 A CE LYS 114 1 Y 1 A NZ LYS 114 A NZ LYS 114 1 Y 1 A CG ARG 190 A CG ARG 190 1 Y 1 A CD ARG 190 A CD ARG 190 1 Y 1 A NE ARG 190 A NE ARG 190 1 Y 1 A CZ ARG 190 A CZ ARG 190 1 Y 1 A NH1 ARG 190 A NH1 ARG 190 1 Y 1 A NH2 ARG 190 A NH2 ARG 190 1 Y 1 A CG ARG 193 A CG ARG 193 1 Y 1 A CD ARG 193 A CD ARG 193 1 Y 1 A NE ARG 193 A NE ARG 193 1 Y 1 A CZ ARG 193 A CZ ARG 193 1 Y 1 A NH1 ARG 193 A NH1 ARG 193 1 Y 1 A NH2 ARG 193 A NH2 ARG 193 1 Y 1 A CG GLN 232 A CG GLN 232 1 Y 1 A CD GLN 232 A CD GLN 232 1 Y 1 A OE1 GLN 232 A OE1 GLN 232 1 Y 1 A NE2 GLN 232 A NE2 GLN 232 1 Y 1 A GLY 93 A GLY 93 1 Y 1 A GLU 94 A GLU 94 1 Y 1 A GLY 110 A GLY 110 1 Y 1 A ILE 111 A ILE 111 1 Y 1 A GLY 112 A GLY 112 1 Y 1 A LYS 113 A LYS 113 1 Y 1 A ASP 264 A ASP 264 1 Y 1 A LEU 265 A LEU 265 1 Y 1 A GLU 266 A GLU 266 1 Y 1 A HIS 267 A HIS 267 1 Y 1 A HIS 268 A HIS 268 1 Y 1 A HIS 269 A HIS 269 1 Y 1 A HIS 270 A HIS 270 1 Y 1 A HIS 271 A HIS 271 1 Y 1 A HIS 272 A HIS 272 1 Y 1 A ASN 122 -104.50 -64.61 1 A ASP 141 73.43 -3.35 1 A ALA 162 -97.27 -125.15 1 A ALA 185 46.28 70.49 1 A ASN 189 -134.15 -155.16 1 A HIS 204 79.88 -12.20 1 A ASP 222 56.93 -118.13 0.5326 0.0000 -0.0000 10.7675 0.0000 -11.3001 0.2374 0.2035 0.2045 2.480 55.275 289 10105 2.87 95.63 0.39 1 1.27 Isomorphous replacement 25.19 0.83 1.10 ML FLAT BULK SOLVENT MODEL 57.401 0.336 2.480 55.275 72 2162 57 0 2033 0.004 2184 0.854 2965 13.932 794 0.058 323 0.003 375 0.3485 0.2948 2.7296 131 4605 99.00 0.2670 0.2291 3.1246 157 4541 98.00 0.2484 0.1908 3.9365 105 4194 90.00 0.1920 0.1772 55.2891 135 4498 96.00 2.44 55.30 3V8M 10105 0 0 1 3.0 100.0 2.44 2.57 1 3.3 100.0 data collection ADSC Quantum refinement PHENIX (phenix.refine: 1.6.4_486) data reduction MOSFLM data scaling SCALA Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with 5'-azido-8-bromo-5'-deoxyadenosine 1 N N 2 N N 2 N N 3 N N 4 N N A ASP 10 A ASP 10 HELX_P A GLY 25 A GLY 25 1 1 16 A GLY 44 A GLY 44 HELX_P A TYR 55 A TYR 55 1 2 12 A GLU 56 A GLU 56 HELX_P A ILE 62 A ILE 62 5 3 7 A ARG 79 A ARG 79 HELX_P A ALA 81 A ALA 81 5 4 3 A GLU 82 A GLU 82 HELX_P A ALA 91 A ALA 91 1 5 10 A PRO 157 A PRO 157 HELX_P A THR 161 A THR 161 5 6 5 A ALA 162 A ALA 162 HELX_P A LEU 167 A LEU 167 1 7 6 A PRO 252 A PRO 252 HELX_P A ILE 262 A ILE 262 1 8 11 TRANSFERASE ligand-screening by crystallography, Two-domain kinase, Inorganic polyphosphate/ATP-NAD kinase 1, TRANSFERASE PPNK1_LISMO UNP 1 1 Q8Y8D7 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIED 1 264 3V8M 1 264 Q8Y8D7 A 1 1 264 1 expression tag LEU 265 3V8M A Q8Y8D7 UNP 265 1 expression tag GLU 266 3V8M A Q8Y8D7 UNP 266 1 expression tag HIS 267 3V8M A Q8Y8D7 UNP 267 1 expression tag HIS 268 3V8M A Q8Y8D7 UNP 268 1 expression tag HIS 269 3V8M A Q8Y8D7 UNP 269 1 expression tag HIS 270 3V8M A Q8Y8D7 UNP 270 1 expression tag HIS 271 3V8M A Q8Y8D7 UNP 271 1 expression tag HIS 272 3V8M A Q8Y8D7 UNP 272 4 6 6 parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLU 30 A GLU 30 A TYR 31 A TYR 31 A LYS 2 A LYS 2 A SER 7 A SER 7 A ILE 38 A ILE 38 A GLY 43 A GLY 43 A ALA 63 A ALA 63 A HIS 68 A HIS 68 A ALA 116 A ALA 116 A ALA 120 A ALA 120 A GLN 96 A GLN 96 A LYS 108 A LYS 108 A GLU 233 A GLU 233 A ARG 247 A ARG 247 A VAL 207 A VAL 207 A PRO 211 A PRO 211 A PHE 133 A PHE 133 A ILE 139 A ILE 139 A ILE 142 A ILE 142 A GLY 149 A GLY 149 A LEU 199 A LEU 199 A PRO 202 A PRO 202 A ALA 178 A ALA 178 A MET 184 A MET 184 A GLY 151 A GLY 151 A SER 155 A SER 155 A GLU 123 A GLU 123 A SER 128 A SER 128 A PHE 217 A PHE 217 A VAL 221 A VAL 221 A LEU 224 A LEU 224 A HIS 228 A HIS 228 BINDING SITE FOR RESIDUE Z8B A 301 A Z8B 301 Software 11 BINDING SITE FOR RESIDUE Z8B A 302 A Z8B 302 Software 10 BINDING SITE FOR RESIDUE CIT A 303 A CIT 303 Software 10 A ASP 45 A ASP 45 11 1_555 A HIS 71 A HIS 71 11 1_555 A PHE 74 A PHE 74 11 1_555 A TYR 75 A TYR 75 11 1_555 A ASN 122 A ASN 122 11 1_555 A ARG 148 A ARG 148 11 4_555 A SER 158 A SER 158 11 1_555 A THR 161 A THR 161 11 1_555 A ALA 162 A ALA 162 11 1_555 A ILE 187 A ILE 187 11 4_555 A Z8B 302 C Z8B 11 1_555 A LEU 49 A LEU 49 10 1_555 A ASN 122 A ASN 122 10 1_555 A GLU 123 A GLU 123 10 1_555 A ASP 150 A ASP 150 10 4_555 A ALA 162 A ALA 162 10 1_555 A TYR 163 A TYR 163 10 1_555 A SER 166 A SER 166 10 1_555 A ALA 185 A ALA 185 10 4_555 A ILE 187 A ILE 187 10 4_555 A Z8B 301 B Z8B 10 1_555 A VAL 98 A VAL 98 10 1_555 A TYR 100 A TYR 100 10 1_555 A HIS 173 A HIS 173 10 1_555 A ARG 247 A ARG 247 10 1_555 A PHE 251 A PHE 251 10 1_555 A PRO 252 A PRO 252 10 1_555 A PHE 253 A PHE 253 10 1_555 A ARG 256 A ARG 256 10 1_555 A HOH 421 E HOH 10 1_555 A HOH 424 E HOH 10 1_555 23 I 2 2 2