0.015993
0.000000
0.000000
0.000000
0.013218
0.000000
0.000000
0.000000
0.008457
0.00000
0.00000
0.00000
Gelin, M.
Poncet-Montange, G.
Assairi, L.
Morellato, L.
Huteau, V.
Dugu, L.
Dussurget, O.
Pochet, S.
Labesse, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
62.528
75.654
118.241
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H8 O7
192.124
CITRIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C10 H11 Br N8 O3
371.150
5'-azido-8-bromo-5'-deoxyadenosine
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
R
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
S
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
N
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
S
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
Y
163
N
C
Y
164
N
N
Y
165
N
C
Y
166
N
C
Y
167
N
N
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
S
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
N
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
S
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
R
C
N
330
N
O
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
N
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
Y
412
N
N
Y
413
N
C
Y
414
N
N
Y
415
N
C
Y
416
N
C
Y
417
N
C
N
418
N
N
Y
419
N
N
Y
420
N
C
N
421
N
BR
Y
422
N
N
N
423
R
C
N
424
R
C
N
425
N
O
N
426
S
C
N
427
N
O
N
428
R
C
N
429
N
C
N
430
N
O
N
431
N
N
N
432
N
N
N
433
N
N
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
Y
160
N
sing
Y
161
N
doub
Y
162
N
doub
N
163
N
sing
Y
164
N
sing
N
165
N
sing
Y
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
Y
268
N
doub
Y
269
N
sing
Y
270
N
sing
N
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
doub
N
275
N
sing
Y
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
doub
Y
342
N
sing
Y
343
N
sing
N
344
N
sing
Y
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
doub
N
398
N
sing
N
399
N
sing
Y
400
N
sing
Y
401
N
doub
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
sing
Y
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
Y
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
UK
Structure
STRUE6
2005
0969-2126
20
1107
1117
10.1016/j.str.2012.03.024
22608967
Screening and In Situ Synthesis Using Crystals of a NAD Kinase Lead to a Potent Antistaphylococcal Compound.
2012
10.2210/pdb3v8m/pdb
pdb_00003v8m
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-03-13
ADSC QUANTUM 4
Asymmetric Laue 001
SINGLE WAVELENGTH
M
x-ray
1
0.93300
1.0
ID14-2
ESRF
0.93300
SYNCHROTRON
ESRF BEAMLINE ID14-2
31045.279
Probable inorganic polyphosphate/ATP-NAD kinase 1
2.7.1.23
1
man
polymer
371.150
5'-azido-8-bromo-5'-deoxyadenosine
2
syn
non-polymer
192.124
CITRIC ACID
1
syn
non-polymer
18.015
water
72
nat
water
Poly(P)/ATP NAD kinase 1
no
no
MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP
AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT
TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA
KKIHFARFRSFPFWRRVHDSFIEDLEHHHHHH
MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP
AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT
TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA
KKIHFARFRSFPFWRRVHDSFIEDLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
ppnK1, lmo0968
1639
Listeria monocytogenes
562
Escherichia coli
1
2.25
45.38
VAPOR DIFFUSION, HANGING DROP
5.0
30 mM sodium bromide, 220 mM potassium citrate, pH 4.8-5.1, glycerol 6%, 15-16% w/v polyethylene glycol 400, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
291.15
software
pdbx_distant_solvent_atoms
pdbx_struct_assembly
pdbx_struct_assembly_gen
pdbx_struct_assembly_prop
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Database references
Database references
Refinement description
Advisory
Database references
Derived calculations
Data collection
Database references
Derived calculations
1
0
2012-03-14
1
1
2012-06-06
1
2
2012-06-27
1
3
2017-11-08
1
4
2020-06-24
1
5
2024-02-28
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.value
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-12-23
REL
REL
1
A
O
HOH
456
7.29
1
A
O
HOH
464
7.13
Z8B
5'-azido-8-bromo-5'-deoxyadenosine
CIT
CITRIC ACID
HOH
water
Z8B
1
2
Z8B
Z8B
301
A
Z8B
2
2
Z8B
Z8B
302
A
CIT
1
3
CIT
CIT
303
A
HOH
1
4
HOH
HOH
401
A
HOH
2
4
HOH
HOH
402
A
HOH
3
4
HOH
HOH
403
A
HOH
4
4
HOH
HOH
404
A
HOH
5
4
HOH
HOH
405
A
HOH
6
4
HOH
HOH
406
A
HOH
7
4
HOH
HOH
407
A
HOH
8
4
HOH
HOH
408
A
HOH
9
4
HOH
HOH
409
A
HOH
10
4
HOH
HOH
410
A
HOH
12
4
HOH
HOH
411
A
HOH
13
4
HOH
HOH
412
A
HOH
14
4
HOH
HOH
413
A
HOH
16
4
HOH
HOH
414
A
HOH
18
4
HOH
HOH
415
A
HOH
20
4
HOH
HOH
416
A
HOH
23
4
HOH
HOH
417
A
HOH
25
4
HOH
HOH
418
A
HOH
26
4
HOH
HOH
419
A
HOH
27
4
HOH
HOH
420
A
HOH
28
4
HOH
HOH
421
A
HOH
30
4
HOH
HOH
422
A
HOH
33
4
HOH
HOH
423
A
HOH
34
4
HOH
HOH
424
A
HOH
36
4
HOH
HOH
425
A
HOH
37
4
HOH
HOH
426
A
HOH
38
4
HOH
HOH
427
A
HOH
40
4
HOH
HOH
428
A
HOH
42
4
HOH
HOH
429
A
HOH
44
4
HOH
HOH
430
A
HOH
45
4
HOH
HOH
431
A
HOH
49
4
HOH
HOH
432
A
HOH
52
4
HOH
HOH
433
A
HOH
53
4
HOH
HOH
434
A
HOH
57
4
HOH
HOH
435
A
HOH
62
4
HOH
HOH
436
A
HOH
64
4
HOH
HOH
437
A
HOH
65
4
HOH
HOH
438
A
HOH
67
4
HOH
HOH
439
A
HOH
68
4
HOH
HOH
440
A
HOH
69
4
HOH
HOH
441
A
HOH
70
4
HOH
HOH
442
A
HOH
71
4
HOH
HOH
443
A
HOH
72
4
HOH
HOH
444
A
HOH
73
4
HOH
HOH
445
A
HOH
74
4
HOH
HOH
446
A
HOH
75
4
HOH
HOH
447
A
HOH
76
4
HOH
HOH
448
A
HOH
77
4
HOH
HOH
449
A
HOH
78
4
HOH
HOH
450
A
HOH
79
4
HOH
HOH
451
A
HOH
80
4
HOH
HOH
452
A
HOH
81
4
HOH
HOH
453
A
HOH
82
4
HOH
HOH
454
A
HOH
83
4
HOH
HOH
455
A
HOH
84
4
HOH
HOH
456
A
HOH
85
4
HOH
HOH
457
A
HOH
86
4
HOH
HOH
458
A
HOH
87
4
HOH
HOH
459
A
HOH
88
4
HOH
HOH
460
A
HOH
89
4
HOH
HOH
461
A
HOH
90
4
HOH
HOH
462
A
HOH
92
4
HOH
HOH
463
A
HOH
93
4
HOH
HOH
464
A
HOH
95
4
HOH
HOH
465
A
HOH
96
4
HOH
HOH
466
A
HOH
97
4
HOH
HOH
467
A
HOH
98
4
HOH
HOH
468
A
HOH
99
4
HOH
HOH
469
A
HOH
100
4
HOH
HOH
470
A
HOH
101
4
HOH
HOH
471
A
HOH
102
4
HOH
HOH
472
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
TYR
3
n
3
TYR
3
A
MET
4
n
4
MET
4
A
ILE
5
n
5
ILE
5
A
THR
6
n
6
THR
6
A
SER
7
n
7
SER
7
A
LYS
8
n
8
LYS
8
A
GLY
9
n
9
GLY
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
LYS
12
n
12
LYS
12
A
SER
13
n
13
SER
13
A
ASP
14
n
14
ASP
14
A
LEU
15
n
15
LEU
15
A
LEU
16
n
16
LEU
16
A
ARG
17
n
17
ARG
17
A
LEU
18
n
18
LEU
18
A
ASN
19
n
19
ASN
19
A
MET
20
n
20
MET
20
A
ILE
21
n
21
ILE
21
A
ALA
22
n
22
ALA
22
A
GLY
23
n
23
GLY
23
A
PHE
24
n
24
PHE
24
A
GLY
25
n
25
GLY
25
A
GLU
26
n
26
GLU
26
A
TYR
27
n
27
TYR
27
A
ASP
28
n
28
ASP
28
A
MET
29
n
29
MET
29
A
GLU
30
n
30
GLU
30
A
TYR
31
n
31
TYR
31
A
ASP
32
n
32
ASP
32
A
ASP
33
n
33
ASP
33
A
VAL
34
n
34
VAL
34
A
GLU
35
n
35
GLU
35
A
PRO
36
n
36
PRO
36
A
GLU
37
n
37
GLU
37
A
ILE
38
n
38
ILE
38
A
VAL
39
n
39
VAL
39
A
ILE
40
n
40
ILE
40
A
SER
41
n
41
SER
41
A
ILE
42
n
42
ILE
42
A
GLY
43
n
43
GLY
43
A
GLY
44
n
44
GLY
44
A
ASP
45
n
45
ASP
45
A
GLY
46
n
46
GLY
46
A
THR
47
n
47
THR
47
A
PHE
48
n
48
PHE
48
A
LEU
49
n
49
LEU
49
A
SER
50
n
50
SER
50
A
ALA
51
n
51
ALA
51
A
PHE
52
n
52
PHE
52
A
HIS
53
n
53
HIS
53
A
GLN
54
n
54
GLN
54
A
TYR
55
n
55
TYR
55
A
GLU
56
n
56
GLU
56
A
GLU
57
n
57
GLU
57
A
ARG
58
n
58
ARG
58
A
LEU
59
n
59
LEU
59
A
ASP
60
n
60
ASP
60
A
GLU
61
n
61
GLU
61
A
ILE
62
n
62
ILE
62
A
ALA
63
n
63
ALA
63
A
PHE
64
n
64
PHE
64
A
ILE
65
n
65
ILE
65
A
GLY
66
n
66
GLY
66
A
ILE
67
n
67
ILE
67
A
HIS
68
n
68
HIS
68
A
THR
69
n
69
THR
69
A
GLY
70
n
70
GLY
70
A
HIS
71
n
71
HIS
71
A
LEU
72
n
72
LEU
72
A
GLY
73
n
73
GLY
73
A
PHE
74
n
74
PHE
74
A
TYR
75
n
75
TYR
75
A
ALA
76
n
76
ALA
76
A
ASP
77
n
77
ASP
77
A
TRP
78
n
78
TRP
78
A
ARG
79
n
79
ARG
79
A
PRO
80
n
80
PRO
80
A
ALA
81
n
81
ALA
81
A
GLU
82
n
82
GLU
82
A
ALA
83
n
83
ALA
83
A
ASP
84
n
84
ASP
84
A
LYS
85
n
85
LYS
85
A
LEU
86
n
86
LEU
86
A
VAL
87
n
87
VAL
87
A
LYS
88
n
88
LYS
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
ALA
91
n
91
ALA
91
A
LYS
92
n
92
LYS
92
A
n
93
93
A
n
94
94
A
TYR
95
n
95
TYR
95
A
GLN
96
n
96
GLN
96
A
LYS
97
n
97
LYS
97
A
VAL
98
n
98
VAL
98
A
SER
99
n
99
SER
99
A
TYR
100
n
100
TYR
100
A
PRO
101
n
101
PRO
101
A
LEU
102
n
102
LEU
102
A
LEU
103
n
103
LEU
103
A
LYS
104
n
104
LYS
104
A
THR
105
n
105
THR
105
A
THR
106
n
106
THR
106
A
VAL
107
n
107
VAL
107
A
LYS
108
n
108
LYS
108
A
TYR
109
n
109
TYR
109
A
n
110
110
A
n
111
111
A
n
112
112
A
n
113
113
A
LYS
114
n
114
LYS
114
A
GLU
115
n
115
GLU
115
A
ALA
116
n
116
ALA
116
A
THR
117
n
117
THR
117
A
TYR
118
n
118
TYR
118
A
LEU
119
n
119
LEU
119
A
ALA
120
n
120
ALA
120
A
LEU
121
n
121
LEU
121
A
ASN
122
n
122
ASN
122
A
GLU
123
n
123
GLU
123
A
SER
124
n
124
SER
124
A
THR
125
n
125
THR
125
A
VAL
126
n
126
VAL
126
A
LYS
127
n
127
LYS
127
A
SER
128
n
128
SER
128
A
SER
129
n
129
SER
129
A
GLY
130
n
130
GLY
130
A
GLY
131
n
131
GLY
131
A
PRO
132
n
132
PRO
132
A
PHE
133
n
133
PHE
133
A
VAL
134
n
134
VAL
134
A
VAL
135
n
135
VAL
135
A
ASP
136
n
136
ASP
136
A
VAL
137
n
137
VAL
137
A
VAL
138
n
138
VAL
138
A
ILE
139
n
139
ILE
139
A
ASN
140
n
140
ASN
140
A
ASP
141
n
141
ASP
141
A
ILE
142
n
142
ILE
142
A
HIS
143
n
143
HIS
143
A
PHE
144
n
144
PHE
144
A
GLU
145
n
145
GLU
145
A
ARG
146
n
146
ARG
146
A
PHE
147
n
147
PHE
147
A
ARG
148
n
148
ARG
148
A
GLY
149
n
149
GLY
149
A
ASP
150
n
150
ASP
150
A
GLY
151
n
151
GLY
151
A
LEU
152
n
152
LEU
152
A
CYS
153
n
153
CYS
153
A
MET
154
n
154
MET
154
A
SER
155
n
155
SER
155
A
THR
156
n
156
THR
156
A
PRO
157
n
157
PRO
157
A
SER
158
n
158
SER
158
A
GLY
159
n
159
GLY
159
A
THR
160
n
160
THR
160
A
THR
161
n
161
THR
161
A
ALA
162
n
162
ALA
162
A
TYR
163
n
163
TYR
163
A
ASN
164
n
164
ASN
164
A
LYS
165
n
165
LYS
165
A
SER
166
n
166
SER
166
A
LEU
167
n
167
LEU
167
A
GLY
168
n
168
GLY
168
A
GLY
169
n
169
GLY
169
A
ALA
170
n
170
ALA
170
A
LEU
171
n
171
LEU
171
A
MET
172
n
172
MET
172
A
HIS
173
n
173
HIS
173
A
PRO
174
n
174
PRO
174
A
SER
175
n
175
SER
175
A
ILE
176
n
176
ILE
176
A
GLU
177
n
177
GLU
177
A
ALA
178
n
178
ALA
178
A
MET
179
n
179
MET
179
A
GLN
180
n
180
GLN
180
A
LEU
181
n
181
LEU
181
A
THR
182
n
182
THR
182
A
GLU
183
n
183
GLU
183
A
MET
184
n
184
MET
184
A
ALA
185
n
185
ALA
185
A
SER
186
n
186
SER
186
A
ILE
187
n
187
ILE
187
A
ASN
188
n
188
ASN
188
A
ASN
189
n
189
ASN
189
A
ARG
190
n
190
ARG
190
A
VAL
191
n
191
VAL
191
A
TYR
192
n
192
TYR
192
A
ARG
193
n
193
ARG
193
A
THR
194
n
194
THR
194
A
ILE
195
n
195
ILE
195
A
GLY
196
n
196
GLY
196
A
SER
197
n
197
SER
197
A
PRO
198
n
198
PRO
198
A
LEU
199
n
199
LEU
199
A
VAL
200
n
200
VAL
200
A
PHE
201
n
201
PHE
201
A
PRO
202
n
202
PRO
202
A
LYS
203
n
203
LYS
203
A
HIS
204
n
204
HIS
204
A
HIS
205
n
205
HIS
205
A
VAL
206
n
206
VAL
206
A
VAL
207
n
207
VAL
207
A
SER
208
n
208
SER
208
A
LEU
209
n
209
LEU
209
A
GLN
210
n
210
GLN
210
A
PRO
211
n
211
PRO
211
A
VAL
212
n
212
VAL
212
A
ASN
213
n
213
ASN
213
A
ASP
214
n
214
ASP
214
A
LYS
215
n
215
LYS
215
A
ASP
216
n
216
ASP
216
A
PHE
217
n
217
PHE
217
A
GLN
218
n
218
GLN
218
A
ILE
219
n
219
ILE
219
A
SER
220
n
220
SER
220
A
VAL
221
n
221
VAL
221
A
ASP
222
n
222
ASP
222
A
HIS
223
n
223
HIS
223
A
LEU
224
n
224
LEU
224
A
SER
225
n
225
SER
225
A
ILE
226
n
226
ILE
226
A
LEU
227
n
227
LEU
227
A
HIS
228
n
228
HIS
228
A
ARG
229
n
229
ARG
229
A
ASP
230
n
230
ASP
230
A
VAL
231
n
231
VAL
231
A
GLN
232
n
232
GLN
232
A
GLU
233
n
233
GLU
233
A
ILE
234
n
234
ILE
234
A
ARG
235
n
235
ARG
235
A
TYR
236
n
236
TYR
236
A
GLU
237
n
237
GLU
237
A
VAL
238
n
238
VAL
238
A
SER
239
n
239
SER
239
A
ALA
240
n
240
ALA
240
A
LYS
241
n
241
LYS
241
A
LYS
242
n
242
LYS
242
A
ILE
243
n
243
ILE
243
A
HIS
244
n
244
HIS
244
A
PHE
245
n
245
PHE
245
A
ALA
246
n
246
ALA
246
A
ARG
247
n
247
ARG
247
A
PHE
248
n
248
PHE
248
A
ARG
249
n
249
ARG
249
A
SER
250
n
250
SER
250
A
PHE
251
n
251
PHE
251
A
PRO
252
n
252
PRO
252
A
PHE
253
n
253
PHE
253
A
TRP
254
n
254
TRP
254
A
ARG
255
n
255
ARG
255
A
ARG
256
n
256
ARG
256
A
VAL
257
n
257
VAL
257
A
HIS
258
n
258
HIS
258
A
ASP
259
n
259
ASP
259
A
SER
260
n
260
SER
260
A
PHE
261
n
261
PHE
261
A
ILE
262
n
262
ILE
262
A
GLU
263
n
263
GLU
263
A
n
264
264
A
n
265
265
A
n
266
266
A
n
267
267
A
n
268
268
A
n
269
269
A
n
270
270
A
n
271
271
A
n
272
272
A
2.0653
-0.2369
-0.3661
0.7578
-0.1211
0.2739
0.0162
-0.6343
-0.0835
0.2149
0.0160
0.0686
-0.1750
-0.0596
-0.0133
0.2484
0.0989
0.0498
0.2992
-0.0909
0.0748
refined
13.2817
24.5448
22.4287
X-RAY DIFFRACTION
0.5732
-0.0722
-0.3964
0.4103
-0.0210
1.7648
0.0581
0.0596
0.0193
0.0704
0.0069
0.0283
-0.0374
-0.2256
-0.0558
0.0871
0.0559
0.0119
0.0836
-0.0109
0.0551
refined
19.0350
13.9004
-1.5155
X-RAY DIFFRACTION
0.5732
-0.2555
-0.0758
0.2761
0.0644
0.0593
0.1682
0.1424
-0.0817
-0.1679
-0.0940
-0.0717
-0.0034
0.0284
0.0695
0.0477
0.0890
0.0186
0.0447
-0.0066
0.0297
refined
19.7558
17.4551
5.9518
X-RAY DIFFRACTION
7.1959
0.4663
-0.8195
1.7993
1.6082
3.4171
-0.0414
-0.4119
0.3686
-0.0263
0.0438
0.0906
0.1398
0.1015
0.0192
0.4163
0.2830
-0.0549
0.6228
-0.1424
0.3497
refined
29.6801
24.7817
15.0828
X-RAY DIFFRACTION
3.1922
0.5756
-0.3195
3.7941
0.5916
0.1461
-0.0451
-0.7387
0.0342
0.5958
-0.2612
0.0615
0.5554
0.2715
0.2446
0.4266
-0.0364
0.0004
0.3568
0.0415
0.1955
refined
17.1095
8.9791
10.7377
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain A and resid 1:100)
X-RAY DIFFRACTION
2
(chain A and resid 101:264)
X-RAY DIFFRACTION
3
(CHAIN A AND RESID 401:472)
X-RAY DIFFRACTION
4
(CHAIN A AND RESID 303:303)
X-RAY DIFFRACTION
5
(CHAIN A AND RESID 301:302)
author_and_software_defined_assembly
PISA
4
tetrameric
9670
-51
40130
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-x+1,-y,z
crystal symmetry operation
62.5280000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_655
-x+1,y,-z
crystal symmetry operation
62.5280000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
x,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
30
A
O
GLU
30
A
N
TYR
3
A
N
TYR
3
A
N
MET
4
A
N
MET
4
A
O
ILE
40
A
O
ILE
40
A
N
SER
41
A
N
SER
41
A
O
ILE
65
A
O
ILE
65
A
O
ALA
116
A
O
ALA
116
A
N
VAL
107
A
N
VAL
107
A
N
VAL
98
A
N
VAL
98
A
O
PHE
245
A
O
PHE
245
A
O
TYR
236
A
O
TYR
236
A
N
VAL
207
A
N
VAL
207
A
O
GLN
210
A
O
GLN
210
A
N
ASP
136
A
N
ASP
136
A
N
VAL
137
A
N
VAL
137
A
O
GLU
145
A
O
GLU
145
A
O
LEU
199
A
O
LEU
199
A
N
LEU
181
A
N
LEU
181
A
O
GLN
180
A
O
GLN
180
A
N
SER
155
A
N
SER
155
A
O
MET
154
A
O
MET
154
A
N
SER
124
A
N
SER
124
A
N
LYS
127
A
N
LYS
127
A
O
GLN
218
A
O
GLN
218
A
N
PHE
217
A
N
PHE
217
A
O
HIS
228
A
O
HIS
228
1
A
HOH
430
E
HOH
1
A
HOH
432
E
HOH
1
A
CG
MET
1
A
CG
MET
1
1
Y
1
A
SD
MET
1
A
SD
MET
1
1
Y
1
A
CE
MET
1
A
CE
MET
1
1
Y
1
A
CG
GLU
11
A
CG
GLU
11
1
Y
1
A
CD
GLU
11
A
CD
GLU
11
1
Y
1
A
OE1
GLU
11
A
OE1
GLU
11
1
Y
1
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
1
A
CG
LYS
85
A
CG
LYS
85
1
Y
1
A
CD
LYS
85
A
CD
LYS
85
1
Y
1
A
CE
LYS
85
A
CE
LYS
85
1
Y
1
A
NZ
LYS
85
A
NZ
LYS
85
1
Y
1
A
CB
ALA
91
A
CB
ALA
91
1
Y
1
A
CG
LYS
114
A
CG
LYS
114
1
Y
1
A
CD
LYS
114
A
CD
LYS
114
1
Y
1
A
CE
LYS
114
A
CE
LYS
114
1
Y
1
A
NZ
LYS
114
A
NZ
LYS
114
1
Y
1
A
CG
ARG
190
A
CG
ARG
190
1
Y
1
A
CD
ARG
190
A
CD
ARG
190
1
Y
1
A
NE
ARG
190
A
NE
ARG
190
1
Y
1
A
CZ
ARG
190
A
CZ
ARG
190
1
Y
1
A
NH1
ARG
190
A
NH1
ARG
190
1
Y
1
A
NH2
ARG
190
A
NH2
ARG
190
1
Y
1
A
CG
ARG
193
A
CG
ARG
193
1
Y
1
A
CD
ARG
193
A
CD
ARG
193
1
Y
1
A
NE
ARG
193
A
NE
ARG
193
1
Y
1
A
CZ
ARG
193
A
CZ
ARG
193
1
Y
1
A
NH1
ARG
193
A
NH1
ARG
193
1
Y
1
A
NH2
ARG
193
A
NH2
ARG
193
1
Y
1
A
CG
GLN
232
A
CG
GLN
232
1
Y
1
A
CD
GLN
232
A
CD
GLN
232
1
Y
1
A
OE1
GLN
232
A
OE1
GLN
232
1
Y
1
A
NE2
GLN
232
A
NE2
GLN
232
1
Y
1
A
GLY
93
A
GLY
93
1
Y
1
A
GLU
94
A
GLU
94
1
Y
1
A
GLY
110
A
GLY
110
1
Y
1
A
ILE
111
A
ILE
111
1
Y
1
A
GLY
112
A
GLY
112
1
Y
1
A
LYS
113
A
LYS
113
1
Y
1
A
ASP
264
A
ASP
264
1
Y
1
A
LEU
265
A
LEU
265
1
Y
1
A
GLU
266
A
GLU
266
1
Y
1
A
HIS
267
A
HIS
267
1
Y
1
A
HIS
268
A
HIS
268
1
Y
1
A
HIS
269
A
HIS
269
1
Y
1
A
HIS
270
A
HIS
270
1
Y
1
A
HIS
271
A
HIS
271
1
Y
1
A
HIS
272
A
HIS
272
1
Y
1
A
ASN
122
-104.50
-64.61
1
A
ASP
141
73.43
-3.35
1
A
ALA
162
-97.27
-125.15
1
A
ALA
185
46.28
70.49
1
A
ASN
189
-134.15
-155.16
1
A
HIS
204
79.88
-12.20
1
A
ASP
222
56.93
-118.13
0.5326
0.0000
-0.0000
10.7675
0.0000
-11.3001
0.2374
0.2035
0.2045
2.480
55.275
289
10105
2.87
95.63
0.39
1
1.27
Isomorphous replacement
25.19
0.83
1.10
ML
FLAT BULK SOLVENT MODEL
57.401
0.336
2.480
55.275
72
2162
57
0
2033
0.004
2184
0.854
2965
13.932
794
0.058
323
0.003
375
0.3485
0.2948
2.7296
131
4605
99.00
0.2670
0.2291
3.1246
157
4541
98.00
0.2484
0.1908
3.9365
105
4194
90.00
0.1920
0.1772
55.2891
135
4498
96.00
2.44
55.30
3V8M
10105
0
0
1
3.0
100.0
2.44
2.57
1
3.3
100.0
data collection
ADSC
Quantum
refinement
PHENIX
(phenix.refine: 1.6.4_486)
data reduction
MOSFLM
data scaling
SCALA
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with 5'-azido-8-bromo-5'-deoxyadenosine
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
ASP
10
A
ASP
10
HELX_P
A
GLY
25
A
GLY
25
1
1
16
A
GLY
44
A
GLY
44
HELX_P
A
TYR
55
A
TYR
55
1
2
12
A
GLU
56
A
GLU
56
HELX_P
A
ILE
62
A
ILE
62
5
3
7
A
ARG
79
A
ARG
79
HELX_P
A
ALA
81
A
ALA
81
5
4
3
A
GLU
82
A
GLU
82
HELX_P
A
ALA
91
A
ALA
91
1
5
10
A
PRO
157
A
PRO
157
HELX_P
A
THR
161
A
THR
161
5
6
5
A
ALA
162
A
ALA
162
HELX_P
A
LEU
167
A
LEU
167
1
7
6
A
PRO
252
A
PRO
252
HELX_P
A
ILE
262
A
ILE
262
1
8
11
TRANSFERASE
ligand-screening by crystallography, Two-domain kinase, Inorganic polyphosphate/ATP-NAD kinase 1, TRANSFERASE
PPNK1_LISMO
UNP
1
1
Q8Y8D7
MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP
AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT
TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA
KKIHFARFRSFPFWRRVHDSFIED
1
264
3V8M
1
264
Q8Y8D7
A
1
1
264
1
expression tag
LEU
265
3V8M
A
Q8Y8D7
UNP
265
1
expression tag
GLU
266
3V8M
A
Q8Y8D7
UNP
266
1
expression tag
HIS
267
3V8M
A
Q8Y8D7
UNP
267
1
expression tag
HIS
268
3V8M
A
Q8Y8D7
UNP
268
1
expression tag
HIS
269
3V8M
A
Q8Y8D7
UNP
269
1
expression tag
HIS
270
3V8M
A
Q8Y8D7
UNP
270
1
expression tag
HIS
271
3V8M
A
Q8Y8D7
UNP
271
1
expression tag
HIS
272
3V8M
A
Q8Y8D7
UNP
272
4
6
6
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
30
A
GLU
30
A
TYR
31
A
TYR
31
A
LYS
2
A
LYS
2
A
SER
7
A
SER
7
A
ILE
38
A
ILE
38
A
GLY
43
A
GLY
43
A
ALA
63
A
ALA
63
A
HIS
68
A
HIS
68
A
ALA
116
A
ALA
116
A
ALA
120
A
ALA
120
A
GLN
96
A
GLN
96
A
LYS
108
A
LYS
108
A
GLU
233
A
GLU
233
A
ARG
247
A
ARG
247
A
VAL
207
A
VAL
207
A
PRO
211
A
PRO
211
A
PHE
133
A
PHE
133
A
ILE
139
A
ILE
139
A
ILE
142
A
ILE
142
A
GLY
149
A
GLY
149
A
LEU
199
A
LEU
199
A
PRO
202
A
PRO
202
A
ALA
178
A
ALA
178
A
MET
184
A
MET
184
A
GLY
151
A
GLY
151
A
SER
155
A
SER
155
A
GLU
123
A
GLU
123
A
SER
128
A
SER
128
A
PHE
217
A
PHE
217
A
VAL
221
A
VAL
221
A
LEU
224
A
LEU
224
A
HIS
228
A
HIS
228
BINDING SITE FOR RESIDUE Z8B A 301
A
Z8B
301
Software
11
BINDING SITE FOR RESIDUE Z8B A 302
A
Z8B
302
Software
10
BINDING SITE FOR RESIDUE CIT A 303
A
CIT
303
Software
10
A
ASP
45
A
ASP
45
11
1_555
A
HIS
71
A
HIS
71
11
1_555
A
PHE
74
A
PHE
74
11
1_555
A
TYR
75
A
TYR
75
11
1_555
A
ASN
122
A
ASN
122
11
1_555
A
ARG
148
A
ARG
148
11
4_555
A
SER
158
A
SER
158
11
1_555
A
THR
161
A
THR
161
11
1_555
A
ALA
162
A
ALA
162
11
1_555
A
ILE
187
A
ILE
187
11
4_555
A
Z8B
302
C
Z8B
11
1_555
A
LEU
49
A
LEU
49
10
1_555
A
ASN
122
A
ASN
122
10
1_555
A
GLU
123
A
GLU
123
10
1_555
A
ASP
150
A
ASP
150
10
4_555
A
ALA
162
A
ALA
162
10
1_555
A
TYR
163
A
TYR
163
10
1_555
A
SER
166
A
SER
166
10
1_555
A
ALA
185
A
ALA
185
10
4_555
A
ILE
187
A
ILE
187
10
4_555
A
Z8B
301
B
Z8B
10
1_555
A
VAL
98
A
VAL
98
10
1_555
A
TYR
100
A
TYR
100
10
1_555
A
HIS
173
A
HIS
173
10
1_555
A
ARG
247
A
ARG
247
10
1_555
A
PHE
251
A
PHE
251
10
1_555
A
PRO
252
A
PRO
252
10
1_555
A
PHE
253
A
PHE
253
10
1_555
A
ARG
256
A
ARG
256
10
1_555
A
HOH
421
E
HOH
10
1_555
A
HOH
424
E
HOH
10
1_555
23
I 2 2 2