0.006087 0.000000 0.004368 0.000000 0.027041 0.000000 0.000000 0.000000 0.012379 0.000000 0.000000 0.000000 Jenkins, J.L. Kielkopf, C.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 125.670 90.000 164.296 36.981 99.431 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H12 Br N2 O8 P 387.078 n 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C42 H75 N3 O15 862.056 N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE DEOXY-BIGCHAP non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C4 H8 O2 88.105 1,4-DIETHYLENE DIOXIDE non-polymer C9 H13 N2 O8 P 308.182 y 2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 N C N 76 N N N 77 N C N 78 N C N 79 N C N 80 N O N 81 N O N 82 N BR N 83 R C N 84 N C N 85 S C N 86 R C N 87 N O N 88 N O N 89 N C N 90 N O N 91 N P N 92 N O N 93 N O N 94 N O N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N C N 108 S C N 109 N C N 110 S C N 111 R C N 112 S C N 113 N C N 114 N C N 115 R C N 116 N C N 117 N C N 118 N C N 119 R C N 120 N C N 121 R C N 122 N C N 123 N C N 124 R C N 125 S C N 126 R C N 127 N C N 128 N C N 129 N C N 130 N O N 131 N O N 132 N C N 133 N N N 134 N C N 135 N C N 136 N C N 137 N N N 138 N C N 139 R C N 140 N O N 141 S C N 142 N O N 143 R C N 144 N O N 145 R C N 146 N O N 147 N C N 148 N O N 149 N O N 150 N C N 151 N C N 152 N C N 153 N N N 154 N C N 155 R C N 156 N O N 157 S C N 158 N O N 159 R C N 160 N O N 161 R C N 162 N O N 163 N C N 164 N O N 165 N O N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N N N 243 R C N 244 N C N 245 N O N 246 N C N 247 N S N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N C N 257 N C N 258 N C N 259 N C N 260 N O N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N O N 271 N P N 272 N O N 273 N O N 274 N O N 275 N C N 276 R C N 277 N O N 278 S C N 279 N O N 280 N C N 281 R C N 282 N N N 283 N C N 284 N O N 285 N N N 286 N C N 287 N O N 288 N C N 289 N C N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C N 308 N C N 309 N C N 310 N O N 311 N N N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C N 328 N C N 329 N C N 330 N O N 331 N O N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 N C N 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N C N 353 N O N 354 N C N 355 N O N 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N N N 367 S C N 368 N C N 369 N O N 370 N C Y 371 N C Y 372 N N Y 373 N C Y 374 N C Y 375 N N N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N O N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 S C N 395 N C N 396 N C N 397 N C N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N N N 413 S C N 414 N C N 415 N O N 416 N C N 417 N C N 418 N C N 419 N C N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C N 439 N C N 440 N C N 441 N C N 442 N N N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N N N 460 S C N 461 N C N 462 N O N 463 N C N 464 N C N 465 N S N 466 N C N 467 N O N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N N N 480 S C N 481 N C N 482 N O N 483 N C Y 484 N C Y 485 N C Y 486 N C Y 487 N C Y 488 N C Y 489 N C N 490 N O N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N N N 503 S C N 504 N C N 505 N O N 506 N C N 507 N C N 508 N C N 509 N O N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N N N 520 S C N 521 N C N 522 N O N 523 N C N 524 N O N 525 N O N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N S N 534 N O N 535 N O N 536 N O N 537 N O N 538 N N N 539 S C N 540 N C N 541 N O N 542 R C N 543 N O N 544 N C N 545 N O N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N N N 556 S C N 557 N C N 558 N O N 559 N C Y 560 N C Y 561 N C Y 562 N C Y 563 N C Y 564 N C Y 565 N C N 566 N O N 567 N O N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N N N 580 S C N 581 N C N 582 N O N 583 N C N 584 N C N 585 N C N 586 N O N 587 N H N 588 N H N 589 N H N 590 N H N 591 N H N 592 N H N 593 N H N 594 N H N 595 N H N 596 N H N 597 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing Y 373 N sing Y 374 N doub Y 375 N doub N 376 N sing Y 377 N sing N 378 N sing Y 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N doub N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N doub N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N doub N 477 N sing N 478 N sing N 479 N sing N 480 N sing Y 481 N doub Y 482 N sing Y 483 N sing N 484 N sing Y 485 N doub N 486 N sing Y 487 N doub N 488 N sing Y 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N doub N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N doub N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N doub N 524 N doub N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N doub N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N doub N 550 N sing N 551 N sing N 552 N sing N 553 N sing Y 554 N doub Y 555 N sing Y 556 N sing N 557 N sing Y 558 N doub N 559 N sing Y 560 N doub N 561 N sing Y 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing N 572 N sing N 573 N doub N 574 N sing N 575 N sing N 576 N sing N 577 N sing N 578 N sing N 579 N sing N 580 N sing N 581 N sing N 582 N sing N 583 N sing N 584 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 41 3859 3873 10.1093/nar/gkt046 23376934 U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. 2013 10.2210/pdb3vaf/pdb pdb_00003vaf 100 1 CCD 2005-11-02 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 0.960 1.0 X25 NSLS 0.960 SYNCHROTRON NSLS BEAMLINE X25 19075.754 Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 2 man polymer BrU3 DNA 2144.002 DNA 5'-D(*UP*UP*(BRU)P*(BRU)P*UP*UP*U)-3' 2 syn polymer 88.105 1,4-DIETHYLENE DIOXIDE 4 syn non-polymer 96.063 SULFATE ION 6 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 862.056 N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE 1 syn non-polymer 18.015 water 119 nat water U2 auxiliary factor 65 kDa subunit, hU2AF(65), hU2AF65, U2 snRNP auxiliary factor large subunit no no GPLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQ SLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG MQLGDKKLLVQRAS GPLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQ SLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG MQLGDKKLLVQRAS A,B polypeptide(L) no yes (DU)(DU)(BRU)(BRU)(DU)(DU)(DU) UUUUUUU P,E polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 6 95 U2AF2, U2AF65 9606 Homo sapiens 562 Escherichia coli BL21 plasmid PGEX-6P human sample 96 174 U2AF2, U2AF65 9606 Homo sapiens 562 Escherichia coli BL21 plasmid PGEX-6P 1 2.89 57.46 VAPOR DIFFUSION, HANGING DROP 6.5 1.6M Ammonium sulfate, 10% Dioxane, 0.1M MES pH 6.5, Deoxy-Big Chap, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 entity_src_gen software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Refinement description Source and taxonomy Data collection Database references Derived calculations Refinement description 1 0 2013-02-13 1 1 2013-05-22 1 2 2017-08-16 1 3 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id U2AF65 variant with polyuridine tract N-terminal RRM of U2AF65 RCSB Y RCSB 2011-12-29 REL REL DIO 1,4-DIETHYLENE DIOXIDE SO4 SULFATE ION GOL GLYCEROL CPQ N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE HOH water DNA sample PROTEIN WAS COCRYSTALIZED WITH A DNA 7MER (5'-D(*UP*UP*(BRU)P*UP*UP*UP*U)-3') BUT THE PROTEIN BOUND THE DNA IN DIFFERENT REGISTERS RESULTING IN THE BRU APPEARING IN MORE THAN ONE POSITION IN THE STRUCTURE 2G4B PDB ENTRY 2G4B PDB experimental model DIO 6 3 DIO DIO 401 A DIO 8 3 DIO DIO 402 A SO4 5 4 SO4 SO4 403 A SO4 10 4 SO4 SO4 404 A GOL 1 5 GOL GOL 405 A CPQ 101 6 CPQ CPQ 401 B DIO 1 3 DIO DIO 402 B DIO 4 3 DIO DIO 403 B SO4 1 4 SO4 SO4 404 B SO4 6 4 SO4 SO4 405 B SO4 9 4 SO4 SO4 406 B SO4 8 4 SO4 SO4 101 P HOH 1 7 HOH HOH 501 A HOH 2 7 HOH HOH 502 A HOH 3 7 HOH HOH 503 A HOH 10 7 HOH HOH 504 A HOH 15 7 HOH HOH 505 A HOH 22 7 HOH HOH 506 A HOH 23 7 HOH HOH 507 A HOH 27 7 HOH HOH 508 A HOH 28 7 HOH HOH 509 A HOH 33 7 HOH HOH 510 A HOH 34 7 HOH HOH 511 A HOH 36 7 HOH HOH 512 A HOH 37 7 HOH HOH 513 A HOH 38 7 HOH HOH 514 A HOH 39 7 HOH HOH 515 A HOH 42 7 HOH HOH 516 A HOH 43 7 HOH HOH 517 A HOH 44 7 HOH HOH 518 A HOH 46 7 HOH HOH 519 A HOH 48 7 HOH HOH 520 A HOH 51 7 HOH HOH 521 A HOH 54 7 HOH HOH 522 A HOH 55 7 HOH HOH 523 A HOH 56 7 HOH HOH 524 A HOH 58 7 HOH HOH 525 A HOH 64 7 HOH HOH 526 A HOH 65 7 HOH HOH 527 A HOH 67 7 HOH HOH 528 A HOH 68 7 HOH HOH 529 A HOH 69 7 HOH HOH 530 A HOH 70 7 HOH HOH 531 A HOH 74 7 HOH HOH 532 A HOH 83 7 HOH HOH 533 A HOH 84 7 HOH HOH 534 A HOH 85 7 HOH HOH 535 A HOH 90 7 HOH HOH 536 A HOH 94 7 HOH HOH 537 A HOH 97 7 HOH HOH 538 A HOH 98 7 HOH HOH 539 A HOH 99 7 HOH HOH 540 A HOH 109 7 HOH HOH 541 A HOH 111 7 HOH HOH 542 A HOH 115 7 HOH HOH 543 A HOH 117 7 HOH HOH 544 A HOH 118 7 HOH HOH 545 A HOH 4 7 HOH HOH 501 B HOH 5 7 HOH HOH 502 B HOH 8 7 HOH HOH 503 B HOH 14 7 HOH HOH 504 B HOH 16 7 HOH HOH 505 B HOH 17 7 HOH HOH 506 B HOH 19 7 HOH HOH 507 B HOH 24 7 HOH HOH 508 B HOH 25 7 HOH HOH 509 B HOH 26 7 HOH HOH 510 B HOH 29 7 HOH HOH 511 B HOH 30 7 HOH HOH 512 B HOH 31 7 HOH HOH 513 B HOH 32 7 HOH HOH 514 B HOH 35 7 HOH HOH 515 B HOH 40 7 HOH HOH 516 B HOH 45 7 HOH HOH 517 B HOH 47 7 HOH HOH 518 B HOH 49 7 HOH HOH 519 B HOH 50 7 HOH HOH 520 B HOH 52 7 HOH HOH 521 B HOH 53 7 HOH HOH 522 B HOH 59 7 HOH HOH 523 B HOH 60 7 HOH HOH 524 B HOH 61 7 HOH HOH 525 B HOH 62 7 HOH HOH 526 B HOH 63 7 HOH HOH 527 B HOH 71 7 HOH HOH 528 B HOH 72 7 HOH HOH 529 B HOH 75 7 HOH HOH 530 B HOH 76 7 HOH HOH 531 B HOH 77 7 HOH HOH 532 B HOH 78 7 HOH HOH 533 B HOH 79 7 HOH HOH 534 B HOH 80 7 HOH HOH 535 B HOH 81 7 HOH HOH 536 B HOH 82 7 HOH HOH 537 B HOH 87 7 HOH HOH 538 B HOH 89 7 HOH HOH 539 B HOH 91 7 HOH HOH 540 B HOH 92 7 HOH HOH 541 B HOH 95 7 HOH HOH 542 B HOH 96 7 HOH HOH 543 B HOH 101 7 HOH HOH 544 B HOH 102 7 HOH HOH 545 B HOH 103 7 HOH HOH 546 B HOH 104 7 HOH HOH 547 B HOH 105 7 HOH HOH 548 B HOH 107 7 HOH HOH 549 B HOH 108 7 HOH HOH 550 B HOH 110 7 HOH HOH 551 B HOH 112 7 HOH HOH 552 B HOH 113 7 HOH HOH 553 B HOH 114 7 HOH HOH 554 B HOH 116 7 HOH HOH 555 B HOH 20 7 HOH HOH 556 B HOH 9 7 HOH HOH 201 P HOH 11 7 HOH HOH 202 P HOH 18 7 HOH HOH 203 P HOH 21 7 HOH HOH 204 P HOH 41 7 HOH HOH 205 P HOH 66 7 HOH HOH 206 P HOH 106 7 HOH HOH 207 P HOH 119 7 HOH HOH 208 P HOH 6 7 HOH HOH 101 E HOH 7 7 HOH HOH 102 E HOH 12 7 HOH HOH 103 E HOH 13 7 HOH HOH 104 E HOH 57 7 HOH HOH 105 E HOH 73 7 HOH HOH 106 E HOH 86 7 HOH HOH 107 E HOH 88 7 HOH HOH 108 E HOH 93 7 HOH HOH 109 E HOH 100 7 HOH HOH 110 E GLY 143 n 1 GLY 143 A PRO 144 n 2 PRO 144 A LEU 145 n 3 LEU 145 A GLY 146 n 4 GLY 146 A SER 147 n 5 SER 147 A ALA 148 n 6 ALA 148 A ARG 149 n 7 ARG 149 A ARG 150 n 8 ARG 150 A LEU 151 n 9 LEU 151 A TYR 152 n 10 TYR 152 A VAL 153 n 11 VAL 153 A GLY 154 n 12 GLY 154 A ASN 155 n 13 ASN 155 A ILE 156 n 14 ILE 156 A PRO 157 n 15 PRO 157 A PHE 158 n 16 PHE 158 A GLY 159 n 17 GLY 159 A ILE 160 n 18 ILE 160 A THR 161 n 19 THR 161 A GLU 162 n 20 GLU 162 A GLU 163 n 21 GLU 163 A ALA 164 n 22 ALA 164 A MET 165 n 23 MET 165 A MET 166 n 24 MET 166 A ASP 167 n 25 ASP 167 A PHE 168 n 26 PHE 168 A PHE 169 n 27 PHE 169 A ASN 170 n 28 ASN 170 A ALA 171 n 29 ALA 171 A GLN 172 n 30 GLN 172 A MET 173 n 31 MET 173 A ARG 174 n 32 ARG 174 A LEU 175 n 33 LEU 175 A GLY 176 n 34 GLY 176 A GLY 177 n 35 GLY 177 A LEU 178 n 36 LEU 178 A THR 179 n 37 THR 179 A GLN 180 n 38 GLN 180 A ALA 181 n 39 ALA 181 A PRO 182 n 40 PRO 182 A GLY 183 n 41 GLY 183 A ASN 184 n 42 ASN 184 A PRO 185 n 43 PRO 185 A VAL 186 n 44 VAL 186 A LEU 187 n 45 LEU 187 A ALA 188 n 46 ALA 188 A VAL 189 n 47 VAL 189 A GLN 190 n 48 GLN 190 A ILE 191 n 49 ILE 191 A ASN 192 n 50 ASN 192 A GLN 193 n 51 GLN 193 A ASP 194 n 52 ASP 194 A LYS 195 n 53 LYS 195 A ASN 196 n 54 ASN 196 A PHE 197 n 55 PHE 197 A ALA 198 n 56 ALA 198 A PHE 199 n 57 PHE 199 A LEU 200 n 58 LEU 200 A GLU 201 n 59 GLU 201 A PHE 202 n 60 PHE 202 A ARG 203 n 61 ARG 203 A SER 204 n 62 SER 204 A VAL 205 n 63 VAL 205 A ASP 206 n 64 ASP 206 A GLU 207 n 65 GLU 207 A THR 208 n 66 THR 208 A THR 209 n 67 THR 209 A GLN 210 n 68 GLN 210 A ALA 211 n 69 ALA 211 A MET 212 n 70 MET 212 A ALA 213 n 71 ALA 213 A PHE 214 n 72 PHE 214 A ASP 215 n 73 ASP 215 A GLY 216 n 74 GLY 216 A ILE 217 n 75 ILE 217 A ILE 218 n 76 ILE 218 A PHE 219 n 77 PHE 219 A GLN 220 n 78 GLN 220 A GLY 221 n 79 GLY 221 A GLN 222 n 80 GLN 222 A SER 223 n 81 SER 223 A LEU 224 n 82 LEU 224 A LYS 225 n 83 LYS 225 A ILE 226 n 84 ILE 226 A ARG 227 n 85 ARG 227 A ARG 228 n 86 ARG 228 A PRO 229 n 87 PRO 229 A HIS 230 n 88 HIS 230 A ASP 231 n 89 ASP 231 A TYR 232 n 90 TYR 232 A GLN 233 n 91 GLN 233 A PRO 234 n 92 PRO 234 A LEU 235 n 93 LEU 235 A PRO 236 n 94 PRO 236 A GLY 237 n 95 GLY 237 A ALA 258 n 96 ALA 258 A HIS 259 n 97 HIS 259 A LYS 260 n 98 LYS 260 A LEU 261 n 99 LEU 261 A PHE 262 n 100 PHE 262 A ILE 263 n 101 ILE 263 A GLY 264 n 102 GLY 264 A GLY 265 n 103 GLY 265 A LEU 266 n 104 LEU 266 A PRO 267 n 105 PRO 267 A ASN 268 n 106 ASN 268 A TYR 269 n 107 TYR 269 A LEU 270 n 108 LEU 270 A ASN 271 n 109 ASN 271 A ASP 272 n 110 ASP 272 A ASP 273 n 111 ASP 273 A GLN 274 n 112 GLN 274 A VAL 275 n 113 VAL 275 A LYS 276 n 114 LYS 276 A GLU 277 n 115 GLU 277 A LEU 278 n 116 LEU 278 A LEU 279 n 117 LEU 279 A THR 280 n 118 THR 280 A SER 281 n 119 SER 281 A PHE 282 n 120 PHE 282 A GLY 283 n 121 GLY 283 A PRO 284 n 122 PRO 284 A LEU 285 n 123 LEU 285 A LYS 286 n 124 LYS 286 A ALA 287 n 125 ALA 287 A PHE 288 n 126 PHE 288 A ASN 289 n 127 ASN 289 A LEU 290 n 128 LEU 290 A VAL 291 n 129 VAL 291 A LYS 292 n 130 LYS 292 A ASP 293 n 131 ASP 293 A SER 294 n 132 SER 294 A ALA 295 n 133 ALA 295 A THR 296 n 134 THR 296 A GLY 297 n 135 GLY 297 A LEU 298 n 136 LEU 298 A SER 299 n 137 SER 299 A LYS 300 n 138 LYS 300 A GLY 301 n 139 GLY 301 A TYR 302 n 140 TYR 302 A ALA 303 n 141 ALA 303 A PHE 304 n 142 PHE 304 A CYS 305 n 143 CYS 305 A GLU 306 n 144 GLU 306 A TYR 307 n 145 TYR 307 A VAL 308 n 146 VAL 308 A ASP 309 n 147 ASP 309 A ILE 310 n 148 ILE 310 A ASN 311 n 149 ASN 311 A VAL 312 n 150 VAL 312 A THR 313 n 151 THR 313 A ASP 314 n 152 ASP 314 A GLN 315 n 153 GLN 315 A ALA 316 n 154 ALA 316 A ILE 317 n 155 ILE 317 A ALA 318 n 156 ALA 318 A GLY 319 n 157 GLY 319 A LEU 320 n 158 LEU 320 A ASN 321 n 159 ASN 321 A GLY 322 n 160 GLY 322 A MET 323 n 161 MET 323 A GLN 324 n 162 GLN 324 A LEU 325 n 163 LEU 325 A GLY 326 n 164 GLY 326 A ASP 327 n 165 ASP 327 A LYS 328 n 166 LYS 328 A LYS 329 n 167 LYS 329 A LEU 330 n 168 LEU 330 A LEU 331 n 169 LEU 331 A VAL 332 n 170 VAL 332 A GLN 333 n 171 GLN 333 A ARG 334 n 172 ARG 334 A ALA 335 n 173 ALA 335 A SER 336 n 174 SER 336 A n 1 143 B n 2 144 B LEU 145 n 3 LEU 145 B GLY 146 n 4 GLY 146 B SER 147 n 5 SER 147 B ALA 148 n 6 ALA 148 B ARG 149 n 7 ARG 149 B ARG 150 n 8 ARG 150 B LEU 151 n 9 LEU 151 B TYR 152 n 10 TYR 152 B VAL 153 n 11 VAL 153 B GLY 154 n 12 GLY 154 B ASN 155 n 13 ASN 155 B ILE 156 n 14 ILE 156 B PRO 157 n 15 PRO 157 B PHE 158 n 16 PHE 158 B GLY 159 n 17 GLY 159 B ILE 160 n 18 ILE 160 B THR 161 n 19 THR 161 B GLU 162 n 20 GLU 162 B GLU 163 n 21 GLU 163 B ALA 164 n 22 ALA 164 B MET 165 n 23 MET 165 B MET 166 n 24 MET 166 B ASP 167 n 25 ASP 167 B PHE 168 n 26 PHE 168 B PHE 169 n 27 PHE 169 B ASN 170 n 28 ASN 170 B ALA 171 n 29 ALA 171 B GLN 172 n 30 GLN 172 B MET 173 n 31 MET 173 B ARG 174 n 32 ARG 174 B LEU 175 n 33 LEU 175 B GLY 176 n 34 GLY 176 B GLY 177 n 35 GLY 177 B LEU 178 n 36 LEU 178 B THR 179 n 37 THR 179 B GLN 180 n 38 GLN 180 B ALA 181 n 39 ALA 181 B PRO 182 n 40 PRO 182 B GLY 183 n 41 GLY 183 B ASN 184 n 42 ASN 184 B PRO 185 n 43 PRO 185 B VAL 186 n 44 VAL 186 B LEU 187 n 45 LEU 187 B ALA 188 n 46 ALA 188 B VAL 189 n 47 VAL 189 B GLN 190 n 48 GLN 190 B ILE 191 n 49 ILE 191 B ASN 192 n 50 ASN 192 B GLN 193 n 51 GLN 193 B ASP 194 n 52 ASP 194 B LYS 195 n 53 LYS 195 B ASN 196 n 54 ASN 196 B PHE 197 n 55 PHE 197 B ALA 198 n 56 ALA 198 B PHE 199 n 57 PHE 199 B LEU 200 n 58 LEU 200 B GLU 201 n 59 GLU 201 B PHE 202 n 60 PHE 202 B ARG 203 n 61 ARG 203 B SER 204 n 62 SER 204 B VAL 205 n 63 VAL 205 B ASP 206 n 64 ASP 206 B GLU 207 n 65 GLU 207 B THR 208 n 66 THR 208 B THR 209 n 67 THR 209 B GLN 210 n 68 GLN 210 B ALA 211 n 69 ALA 211 B MET 212 n 70 MET 212 B ALA 213 n 71 ALA 213 B PHE 214 n 72 PHE 214 B ASP 215 n 73 ASP 215 B GLY 216 n 74 GLY 216 B ILE 217 n 75 ILE 217 B ILE 218 n 76 ILE 218 B PHE 219 n 77 PHE 219 B GLN 220 n 78 GLN 220 B GLY 221 n 79 GLY 221 B GLN 222 n 80 GLN 222 B SER 223 n 81 SER 223 B LEU 224 n 82 LEU 224 B LYS 225 n 83 LYS 225 B ILE 226 n 84 ILE 226 B ARG 227 n 85 ARG 227 B ARG 228 n 86 ARG 228 B PRO 229 n 87 PRO 229 B HIS 230 n 88 HIS 230 B ASP 231 n 89 ASP 231 B TYR 232 n 90 TYR 232 B GLN 233 n 91 GLN 233 B PRO 234 n 92 PRO 234 B LEU 235 n 93 LEU 235 B PRO 236 n 94 PRO 236 B GLY 237 n 95 GLY 237 B ALA 258 n 96 ALA 258 B HIS 259 n 97 HIS 259 B LYS 260 n 98 LYS 260 B LEU 261 n 99 LEU 261 B PHE 262 n 100 PHE 262 B ILE 263 n 101 ILE 263 B GLY 264 n 102 GLY 264 B GLY 265 n 103 GLY 265 B LEU 266 n 104 LEU 266 B PRO 267 n 105 PRO 267 B ASN 268 n 106 ASN 268 B TYR 269 n 107 TYR 269 B LEU 270 n 108 LEU 270 B ASN 271 n 109 ASN 271 B ASP 272 n 110 ASP 272 B ASP 273 n 111 ASP 273 B GLN 274 n 112 GLN 274 B VAL 275 n 113 VAL 275 B LYS 276 n 114 LYS 276 B GLU 277 n 115 GLU 277 B LEU 278 n 116 LEU 278 B LEU 279 n 117 LEU 279 B THR 280 n 118 THR 280 B SER 281 n 119 SER 281 B PHE 282 n 120 PHE 282 B GLY 283 n 121 GLY 283 B PRO 284 n 122 PRO 284 B LEU 285 n 123 LEU 285 B LYS 286 n 124 LYS 286 B ALA 287 n 125 ALA 287 B PHE 288 n 126 PHE 288 B ASN 289 n 127 ASN 289 B LEU 290 n 128 LEU 290 B VAL 291 n 129 VAL 291 B LYS 292 n 130 LYS 292 B ASP 293 n 131 ASP 293 B SER 294 n 132 SER 294 B ALA 295 n 133 ALA 295 B THR 296 n 134 THR 296 B GLY 297 n 135 GLY 297 B LEU 298 n 136 LEU 298 B SER 299 n 137 SER 299 B LYS 300 n 138 LYS 300 B GLY 301 n 139 GLY 301 B TYR 302 n 140 TYR 302 B ALA 303 n 141 ALA 303 B PHE 304 n 142 PHE 304 B CYS 305 n 143 CYS 305 B GLU 306 n 144 GLU 306 B TYR 307 n 145 TYR 307 B VAL 308 n 146 VAL 308 B ASP 309 n 147 ASP 309 B ILE 310 n 148 ILE 310 B ASN 311 n 149 ASN 311 B VAL 312 n 150 VAL 312 B THR 313 n 151 THR 313 B ASP 314 n 152 ASP 314 B GLN 315 n 153 GLN 315 B ALA 316 n 154 ALA 316 B ILE 317 n 155 ILE 317 B ALA 318 n 156 ALA 318 B GLY 319 n 157 GLY 319 B LEU 320 n 158 LEU 320 B ASN 321 n 159 ASN 321 B GLY 322 n 160 GLY 322 B MET 323 n 161 MET 323 B GLN 324 n 162 GLN 324 B LEU 325 n 163 LEU 325 B GLY 326 n 164 GLY 326 B ASP 327 n 165 ASP 327 B LYS 328 n 166 LYS 328 B LYS 329 n 167 LYS 329 B LEU 330 n 168 LEU 330 B LEU 331 n 169 LEU 331 B VAL 332 n 170 VAL 332 B GLN 333 n 171 GLN 333 B ARG 334 n 172 ARG 334 B ALA 335 n 173 ALA 335 B SER 336 n 174 SER 336 B DU 2 n 1 DU 2 P DU 3 n 2 DU 3 P BRU 4 n 3 BRU 4 P BRU 5 n 4 BRU 5 P DU 6 n 5 DU 6 P DU 7 n 6 DU 7 P n 7 8 P DU 2 n 1 DU 2 E DU 3 n 2 DU 3 E BRU 4 n 3 BRU 4 E BRU 5 n 4 BRU 5 E DU 6 n 5 DU 6 E DU 7 n 6 DU 7 E n 7 8 E 2.5672 1.2567 0.8647 2.0747 -0.0047 5.0989 -0.1687 0.0848 -0.2822 -0.0414 -0.0678 0.0407 0.1759 0.0048 0.2365 -0.1760 -0.0497 0.0296 -0.1834 -0.0855 -0.1179 refined 13.1127 90.3588 111.3416 X-RAY DIFFRACTION 7.8313 1.8796 1.7168 2.4570 -0.1869 4.6975 -0.0276 0.0689 0.0398 -0.2196 0.2429 -0.0119 -0.3348 0.1414 -0.2154 -0.0964 -0.1424 0.1095 -0.1393 -0.1166 0.0194 refined -8.1753 115.5543 107.0935 X-RAY DIFFRACTION 5.4416 0.4345 0.4735 5.9848 -0.8736 3.7806 -0.2528 0.0135 0.0561 -0.4338 0.2985 0.2382 0.2330 -0.2285 -0.0457 -0.1823 -0.0580 -0.0156 -0.1538 0.0051 -0.1908 refined 50.0680 82.1884 109.2609 X-RAY DIFFRACTION 6.3499 1.9353 2.0314 4.5845 -0.4405 6.0914 -0.2877 0.5156 0.0466 -0.3186 0.1226 -0.0789 -0.4136 0.0100 0.1652 -0.1099 -0.0509 -0.0179 -0.0643 0.0105 -0.2476 refined 29.0005 106.1984 94.3352 X-RAY DIFFRACTION A 143 A 237 X-RAY DIFFRACTION 1 A 258 A 336 X-RAY DIFFRACTION 2 B 145 B 237 X-RAY DIFFRACTION 3 B 258 B 336 X-RAY DIFFRACTION 4 author_defined_assembly 4 tetrameric P BRU 4 C BRU 3 DU P BRU 5 C BRU 4 DU E BRU 4 D BRU 3 DU E BRU 5 D BRU 4 DU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 187 A N LEU 45 A O GLU 201 A O GLU 59 A O ALA 198 A O ALA 56 A N VAL 153 A N VAL 11 A N GLY 154 A N GLY 12 A O LYS 225 A O LYS 83 A N PHE 219 A N PHE 77 A O GLN 222 A O GLN 80 A N LYS 286 A N LYS 124 A O GLU 306 A O GLU 144 A O CYS 305 A O CYS 143 A N LEU 261 A N LEU 99 A N GLY 264 A N GLY 102 A O LEU 331 A O LEU 169 A N LEU 325 A N LEU 163 A O LYS 328 A O LYS 166 B N ALA 188 B N ALA 46 B O GLU 201 B O GLU 59 B O ALA 198 B O ALA 56 B N VAL 153 B N VAL 11 B N GLY 154 B N GLY 12 B O LYS 225 B O LYS 83 B N PHE 219 B N PHE 77 B O GLN 222 B O GLN 80 B N ASN 289 B N ASN 127 B O PHE 304 B O PHE 142 B O CYS 305 B O CYS 143 B N LEU 261 B N LEU 99 B N PHE 262 B N PHE 100 B O GLN 333 B O GLN 171 B N LEU 325 B N LEU 163 B O LYS 328 B O LYS 166 1 B N59 CPQ 401 J N59 CPQ 1 1 N 1 B C74 CPQ 401 J C74 CPQ 1 1 N 1 B C75 CPQ 401 J C75 CPQ 1 1 N 1 B C76 CPQ 401 J C76 CPQ 1 1 N 1 B N77 CPQ 401 J N77 CPQ 1 1 N 1 B C78 CPQ 401 J C78 CPQ 1 1 N 1 B C80 CPQ 401 J C80 CPQ 1 1 N 1 B O86 CPQ 401 J O86 CPQ 1 1 N 1 B C81 CPQ 401 J C81 CPQ 1 1 N 1 B O87 CPQ 401 J O87 CPQ 1 1 N 1 B C82 CPQ 401 J C82 CPQ 1 1 N 1 B O88 CPQ 401 J O88 CPQ 1 1 N 1 B C83 CPQ 401 J C83 CPQ 1 1 N 1 B O89 CPQ 401 J O89 CPQ 1 1 N 1 B C84 CPQ 401 J C84 CPQ 1 1 N 1 B O85 CPQ 401 J O85 CPQ 1 1 N 1 B O79 CPQ 401 J O79 CPQ 1 1 N 1 B C68 CPQ 401 J C68 CPQ 1 1 N 1 B C69 CPQ 401 J C69 CPQ 1 1 N 1 B C70 CPQ 401 J C70 CPQ 1 1 N 1 B N71 CPQ 401 J N71 CPQ 1 1 N 1 B C72 CPQ 401 J C72 CPQ 1 1 N 1 B C90 CPQ 401 J C90 CPQ 1 1 N 1 B O96 CPQ 401 J O96 CPQ 1 1 N 1 B C91 CPQ 401 J C91 CPQ 1 1 N 1 B O97 CPQ 401 J O97 CPQ 1 1 N 1 B C92 CPQ 401 J C92 CPQ 1 1 N 1 B O98 CPQ 401 J O98 CPQ 1 1 N 1 B C93 CPQ 401 J C93 CPQ 1 1 N 1 B O99 CPQ 401 J O99 CPQ 1 1 N 1 B C94 CPQ 401 J C94 CPQ 1 1 N 1 B O95 CPQ 401 J O95 CPQ 1 1 N 1 B O73 CPQ 401 J O73 CPQ 1 1 N 1 B GLY 143 B GLY 1 1 Y 1 B PRO 144 B PRO 2 1 Y 1 P DU 8 C DU 7 1 Y 1 E DU 8 D DU 7 1 Y 1 21.64 1.10 109.80 131.44 P P P C5' C4' O4' DU DU DU 2 2 2 N 1 B ALA 181 178.49 176.94 1 B GLN 220 37.96 56.74 1 B SER 281 -58.39 -8.51 1 B LEU 325 -108.87 79.70 72.440 35.2124 15.510 -0.6400 0.0000 0.5000 0.2300 0.0000 1.0000 0.9080 0.8690 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2886 0.2305 0.2361 2.4900 20.5100 1617 17997 16380 9.9000 93.5000 1.000 0.300 17.9590 0.2290 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.7050 0.3490 0.8000 0.8000 1.4000 PDB ENTRY 2G4B MAXIMUM LIKELIHOOD MASK 2.4900 20.5100 119 3107 87 226 2675 0.011 0.022 3068 0.005 0.020 2044 1.401 2.089 4187 1.093 3.000 4992 6.179 5.000 346 35.579 24.885 131 16.179 15.000 461 16.232 15.000 14 0.096 0.200 454 0.004 0.020 3215 0.001 0.020 563 0.216 0.200 582 0.196 0.200 2091 0.188 0.200 1463 0.086 0.200 1588 0.150 0.200 102 0.041 0.200 1 0.194 0.200 25 0.174 0.200 58 0.160 0.200 4 0.509 1.500 2194 0.082 1.500 709 0.633 2.000 2738 1.149 3.000 1589 1.793 4.500 1448 0.4590 0.3710 2.5500 96 963 1059 20 84.7900 2.49 50.00 3VAF 17441 -1.00 0.134 1 18.30 6.60 99.30 0.455 2.49 2.58 1612 1 4.7 99.3 0.474 2.58 2.68 1762 1 6.3 95.2 0.397 2.68 2.80 1729 1 6.6 100.0 0.245 2.80 2.95 1740 1 6.9 100.0 0.189 2.95 3.14 1743 1 7.0 100.0 0.155 3.14 3.38 1754 1 7.1 100.0 0.153 3.38 3.72 1752 1 7.0 100.0 0.124 3.72 4.26 1748 1 6.9 100.0 0.085 4.26 5.36 1785 1 6.9 100.0 0.076 5.36 50.00 1816 1 6.4 98.1 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO program data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.2.0019 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data collection HKL-2000 phasing PHASER Structure of U2AF65 variant with BrU3 DNA 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 4 N N 4 N N 5 N N 6 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N 7 N N 7 N N 7 N N 7 N N A THR 161 A THR 19 HELX_P A GLY 176 A GLY 34 1 1 16 A SER 204 A SER 62 HELX_P A MET 212 A MET 70 1 2 9 A ALA 213 A ALA 71 HELX_P A ASP 215 A ASP 73 5 3 3 A ASN 271 A ASN 109 HELX_P A SER 281 A SER 119 1 4 11 A ASN 311 A ASN 149 HELX_P A ASN 321 A ASN 159 1 5 11 B GLY 146 B GLY 4 HELX_P B ALA 148 B ALA 6 5 6 3 B THR 161 B THR 19 HELX_P B GLY 177 B GLY 35 1 7 17 B SER 204 B SER 62 HELX_P B MET 212 B MET 70 1 8 9 B ALA 213 B ALA 71 HELX_P B ASP 215 B ASP 73 5 9 3 B ASN 271 B ASN 109 HELX_P B SER 281 B SER 119 1 10 11 B ASP 309 B ASP 147 HELX_P B ASN 311 B ASN 149 5 11 3 B VAL 312 B VAL 150 HELX_P B ASN 321 B ASN 159 1 12 10 covale 1.607 both P DU 3 C O3' DU 2 1_555 P BRU 4 C P BRU 3 1_555 covale 1.583 both P BRU 4 C O3' BRU 3 1_555 P BRU 5 C P BRU 4 1_555 covale 1.590 both P BRU 5 C O3' BRU 4 1_555 P DU 6 C P DU 5 1_555 covale 1.587 both E DU 3 D O3' DU 2 1_555 E BRU 4 D P BRU 3 1_555 covale 1.590 both E BRU 4 D O3' BRU 3 1_555 E BRU 5 D P BRU 4 1_555 covale 1.595 both E BRU 5 D O3' BRU 4 1_555 E DU 6 D P DU 5 1_555 RNA BINDING PROTEIN/DNA RNA SPLICING FACTOR, RNA RECOGNITION MOTIF, RNA BINDING PROTEIN-DNA complex A GLY 143 A GLY 1 1 A PRO 144 A PRO 2 -11.83 U2AF2_HUMAN UNP 1 148 P26368 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR RPHDYQPLPG U2AF2_HUMAN UNP 1 258 P26368 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 3VAF PDB 2 1 3VAF UUUUUUU 148 237 3VAF 148 237 P26368 A 1 6 95 258 336 3VAF 258 336 P26368 A 2 96 174 148 237 3VAF 148 237 P26368 B 1 6 95 258 336 3VAF 258 336 P26368 B 2 96 174 2 8 3VAF 2 8 3VAF P 3 1 7 2 8 3VAF 2 8 3VAF E 3 1 7 1 expression tag GLY 143 3VAF A P26368 UNP 1 1 expression tag PRO 144 3VAF A P26368 UNP 2 1 expression tag LEU 145 3VAF A P26368 UNP 3 1 expression tag GLY 146 3VAF A P26368 UNP 4 1 expression tag SER 147 3VAF A P26368 UNP 5 3 expression tag GLY 143 3VAF B P26368 UNP 1 3 expression tag PRO 144 3VAF B P26368 UNP 2 3 expression tag LEU 145 3VAF B P26368 UNP 3 3 expression tag GLY 146 3VAF B P26368 UNP 4 3 expression tag SER 147 3VAF B P26368 UNP 5 4 2 4 2 4 2 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 186 A VAL 44 A ASN 192 A ASN 50 A PHE 197 A PHE 55 A PHE 202 A PHE 60 A ARG 150 A ARG 8 A GLY 154 A GLY 12 A LYS 225 A LYS 83 A ARG 227 A ARG 85 A ILE 218 A ILE 76 A PHE 219 A PHE 77 A GLN 222 A GLN 80 A SER 223 A SER 81 A LEU 285 A LEU 123 A LYS 292 A LYS 130 A SER 299 A SER 137 A TYR 307 A TYR 145 A LEU 261 A LEU 99 A GLY 264 A GLY 102 A LEU 331 A LEU 169 A ARG 334 A ARG 172 A GLN 324 A GLN 162 A LEU 325 A LEU 163 A LYS 328 A LYS 166 A LYS 329 A LYS 167 B VAL 186 B VAL 44 B ASN 192 B ASN 50 B PHE 197 B PHE 55 B PHE 202 B PHE 60 B ARG 150 B ARG 8 B GLY 154 B GLY 12 B LYS 225 B LYS 83 B ARG 227 B ARG 85 B ILE 218 B ILE 76 B PHE 219 B PHE 77 B GLN 222 B GLN 80 B SER 223 B SER 81 B LEU 285 B LEU 123 B LYS 292 B LYS 130 B SER 299 B SER 137 B TYR 307 B TYR 145 B LEU 261 B LEU 99 B GLY 264 B GLY 102 B LEU 331 B LEU 169 B ARG 334 B ARG 172 B GLN 324 B GLN 162 B LEU 325 B LEU 163 B LYS 328 B LYS 166 B LYS 329 B LYS 167 BINDING SITE FOR RESIDUE DIO A 401 A DIO 401 Software 3 BINDING SITE FOR RESIDUE DIO A 402 A DIO 402 Software 4 BINDING SITE FOR RESIDUE SO4 A 403 A SO4 403 Software 2 BINDING SITE FOR RESIDUE SO4 A 404 A SO4 404 Software 4 BINDING SITE FOR RESIDUE GOL A 405 A GOL 405 Software 4 BINDING SITE FOR RESIDUE CPQ B 401 B CPQ 401 Software 4 BINDING SITE FOR RESIDUE DIO B 402 B DIO 402 Software 3 BINDING SITE FOR RESIDUE DIO B 403 B DIO 403 Software 3 BINDING SITE FOR RESIDUE SO4 B 404 B SO4 404 Software 3 BINDING SITE FOR RESIDUE SO4 B 405 B SO4 405 Software 3 BINDING SITE FOR RESIDUE SO4 B 406 B SO4 406 Software 2 BINDING SITE FOR RESIDUE SO4 P 101 P SO4 101 Software 5 A LYS 292 A LYS 130 3 1_555 A HOH 519 Q HOH 3 1_555 A HOH 534 Q HOH 3 1_555 A PRO 144 A PRO 2 4 1_555 A TYR 232 A TYR 90 4 1_555 A GLN 233 A GLN 91 4 1_555 A LEU 325 A LEU 163 4 1_545 A LYS 225 A LYS 83 2 1_555 A ARG 227 A ARG 85 2 1_555 A ARG 228 A ARG 86 4 1_555 A TYR 232 A TYR 90 4 1_555 A ILE 310 A ILE 148 4 1_555 A HOH 502 Q HOH 4 1_555 A ILE 191 A ILE 49 4 1_555 A GLN 193 A GLN 51 4 1_555 A ASP 194 A ASP 52 4 1_555 B LYS 329 B LYS 167 4 1_545 B TYR 269 B TYR 107 4 2_657 B TYR 269 B TYR 107 4 1_555 B GLU 277 B GLU 115 4 1_555 B GLY 326 B GLY 164 4 1_555 B LYS 276 B LYS 114 3 1_555 B LEU 285 B LEU 123 3 1_555 B LYS 286 B LYS 124 3 1_555 B ARG 174 B ARG 32 3 1_555 B GLY 183 B GLY 41 3 1_555 B HIS 259 B HIS 97 3 1_545 B ARG 149 B ARG 7 3 1_555 B SER 204 B SER 62 3 1_555 B VAL 205 B VAL 63 3 1_555 B LYS 225 B LYS 83 3 1_555 B ARG 227 B ARG 85 3 1_555 E HOH 110 T HOH 3 1_555 B MET 212 B MET 70 2 1_555 B ARG 228 B ARG 86 2 1_555 A ARG 150 A ARG 8 5 1_555 A GLU 201 A GLU 59 5 1_555 A SER 281 A SER 119 5 1_545 P DU 7 C DU 6 5 1_555 P HOH 202 S HOH 5 1_555 5 C 1 2 1