0.019131
0.000000
0.004508
0.000000
0.010374
0.000000
0.000000
0.000000
0.015175
0.00000
0.00000
0.00000
Chuck, C.P.
Wong, K.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
103.26
90.00
52.270
96.396
67.703
C5 H11 N3 O
129.160
(4S,5Z)-4-amino-5-iminopentanamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C8 H7 Cl O2
170.593
benzyl chlorocarbonate
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
N
N
3
S
C
N
4
N
N
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
O
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
N
N
35
S
C
N
36
N
C
N
37
N
O
N
38
N
C
N
39
N
C
N
40
N
C
N
41
N
N
N
42
N
C
N
43
N
N
N
44
N
N
N
45
N
O
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
N
N
62
S
C
N
63
N
C
N
64
N
O
N
65
N
C
N
66
N
C
N
67
N
O
N
68
N
N
N
69
N
O
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
R
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
S
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
O
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
N
N
168
S
C
N
169
N
C
N
170
N
O
N
171
N
C
Y
172
N
C
Y
173
N
N
Y
174
N
C
Y
175
N
C
Y
176
N
N
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
S
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
N
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
S
N
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
C
N
304
N
O
N
305
N
O
N
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
N
313
N
CL
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
R
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
N
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
doub
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
Y
168
N
sing
Y
169
N
doub
Y
170
N
doub
N
171
N
sing
Y
172
N
sing
N
173
N
sing
Y
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
Y
276
N
doub
Y
277
N
sing
Y
278
N
sing
N
279
N
sing
Y
280
N
doub
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
Y
295
N
doub
Y
296
N
sing
Y
297
N
sing
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
N
302
N
sing
Y
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
FR
Eur.J.Med.Chem.
EJMCA5
0493
0223-5234
59C
1
6
10.1016/j.ejmech.2012.10.053
23202846
Design, synthesis and crystallographic analysis of nitrile-based broad-spectrum peptidomimetic inhibitors for coronavirus 3C-like proteases
2012
10.2210/pdb3vb5/pdb
pdb_00003vb5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2009-10-12
RIGAKU RAXIS IV
YALE MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-E+ SUPERBRIGHT
33876.637
3C-like proteinase
3.4.22.-
2
man
polymer
565.104
C4Z inhibitor
2
syn
polymer
62.068
1,2-ETHANEDIOL
3
syn
non-polymer
18.015
water
312
nat
water
3CL-PRO, 3CLp
no
no
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGH
SMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFC
YMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGH
SMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFC
YMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ
A,B
polypeptide(L)
no
yes
(PHQ)AVL(0JU)
XAVLX
E,F
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
SARS-CoV
sample
1a
227859
SARS coronavirus
562
Escherichia coli
plasmid
1
2.41
49.00
VAPOR DIFFUSION, HANGING DROP
5.5
8.5% PEG 6000, 0.1M MES, 1mM DTT, 1mM EDTA, 3% DMSO, 10% Glycerol, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
289
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2012-12-12
1
1
2023-11-08
1
2
2023-12-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_value_order
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
RCSB
Y
PDBJ
2011-12-31
REL
REL
EDO
1,2-ETHANEDIOL
HOH
water
Synthetic inhibitor
sample
2Q6G
PDB ENTRY 2Q6G
PDB
experimental model
Enzyme inhibitor
C4Z inhibitor
Peptide-like
EDO
1
3
EDO
EDO
401
A
EDO
2
3
EDO
EDO
401
B
EDO
3
3
EDO
EDO
402
B
HOH
4
4
HOH
HOH
501
A
HOH
10
4
HOH
HOH
502
A
HOH
11
4
HOH
HOH
503
A
HOH
13
4
HOH
HOH
504
A
HOH
17
4
HOH
HOH
505
A
HOH
18
4
HOH
HOH
506
A
HOH
20
4
HOH
HOH
507
A
HOH
23
4
HOH
HOH
508
A
HOH
24
4
HOH
HOH
509
A
HOH
25
4
HOH
HOH
510
A
HOH
28
4
HOH
HOH
511
A
HOH
32
4
HOH
HOH
512
A
HOH
34
4
HOH
HOH
513
A
HOH
36
4
HOH
HOH
514
A
HOH
38
4
HOH
HOH
515
A
HOH
40
4
HOH
HOH
516
A
HOH
41
4
HOH
HOH
517
A
HOH
43
4
HOH
HOH
518
A
HOH
44
4
HOH
HOH
519
A
HOH
49
4
HOH
HOH
520
A
HOH
57
4
HOH
HOH
521
A
HOH
72
4
HOH
HOH
522
A
HOH
73
4
HOH
HOH
523
A
HOH
74
4
HOH
HOH
524
A
HOH
78
4
HOH
HOH
525
A
HOH
79
4
HOH
HOH
526
A
HOH
83
4
HOH
HOH
527
A
HOH
84
4
HOH
HOH
528
A
HOH
85
4
HOH
HOH
529
A
HOH
87
4
HOH
HOH
530
A
HOH
90
4
HOH
HOH
531
A
HOH
94
4
HOH
HOH
532
A
HOH
95
4
HOH
HOH
533
A
HOH
98
4
HOH
HOH
534
A
HOH
100
4
HOH
HOH
535
A
HOH
101
4
HOH
HOH
536
A
HOH
106
4
HOH
HOH
537
A
HOH
113
4
HOH
HOH
538
A
HOH
122
4
HOH
HOH
539
A
HOH
125
4
HOH
HOH
540
A
HOH
127
4
HOH
HOH
541
A
HOH
128
4
HOH
HOH
542
A
HOH
130
4
HOH
HOH
543
A
HOH
131
4
HOH
HOH
544
A
HOH
134
4
HOH
HOH
545
A
HOH
140
4
HOH
HOH
546
A
HOH
142
4
HOH
HOH
547
A
HOH
145
4
HOH
HOH
548
A
HOH
146
4
HOH
HOH
549
A
HOH
147
4
HOH
HOH
550
A
HOH
149
4
HOH
HOH
551
A
HOH
151
4
HOH
HOH
552
A
HOH
152
4
HOH
HOH
553
A
HOH
153
4
HOH
HOH
554
A
HOH
155
4
HOH
HOH
555
A
HOH
156
4
HOH
HOH
556
A
HOH
157
4
HOH
HOH
557
A
HOH
159
4
HOH
HOH
558
A
HOH
162
4
HOH
HOH
559
A
HOH
169
4
HOH
HOH
560
A
HOH
171
4
HOH
HOH
561
A
HOH
173
4
HOH
HOH
562
A
HOH
175
4
HOH
HOH
563
A
HOH
176
4
HOH
HOH
564
A
HOH
178
4
HOH
HOH
565
A
HOH
180
4
HOH
HOH
566
A
HOH
187
4
HOH
HOH
567
A
HOH
190
4
HOH
HOH
568
A
HOH
192
4
HOH
HOH
569
A
HOH
198
4
HOH
HOH
570
A
HOH
201
4
HOH
HOH
571
A
HOH
203
4
HOH
HOH
572
A
HOH
204
4
HOH
HOH
573
A
HOH
208
4
HOH
HOH
574
A
HOH
211
4
HOH
HOH
575
A
HOH
212
4
HOH
HOH
576
A
HOH
213
4
HOH
HOH
577
A
HOH
220
4
HOH
HOH
578
A
HOH
222
4
HOH
HOH
579
A
HOH
223
4
HOH
HOH
580
A
HOH
225
4
HOH
HOH
581
A
HOH
226
4
HOH
HOH
582
A
HOH
233
4
HOH
HOH
583
A
HOH
238
4
HOH
HOH
584
A
HOH
249
4
HOH
HOH
585
A
HOH
253
4
HOH
HOH
586
A
HOH
255
4
HOH
HOH
587
A
HOH
257
4
HOH
HOH
588
A
HOH
264
4
HOH
HOH
589
A
HOH
265
4
HOH
HOH
590
A
HOH
269
4
HOH
HOH
591
A
HOH
270
4
HOH
HOH
592
A
HOH
271
4
HOH
HOH
593
A
HOH
272
4
HOH
HOH
594
A
HOH
276
4
HOH
HOH
595
A
HOH
279
4
HOH
HOH
596
A
HOH
280
4
HOH
HOH
597
A
HOH
281
4
HOH
HOH
598
A
HOH
283
4
HOH
HOH
599
A
HOH
290
4
HOH
HOH
600
A
HOH
291
4
HOH
HOH
601
A
HOH
292
4
HOH
HOH
602
A
HOH
298
4
HOH
HOH
603
A
HOH
299
4
HOH
HOH
604
A
HOH
300
4
HOH
HOH
605
A
HOH
303
4
HOH
HOH
606
A
HOH
304
4
HOH
HOH
607
A
HOH
305
4
HOH
HOH
608
A
HOH
306
4
HOH
HOH
609
A
HOH
312
4
HOH
HOH
610
A
HOH
314
4
HOH
HOH
611
A
HOH
317
4
HOH
HOH
612
A
HOH
318
4
HOH
HOH
613
A
HOH
323
4
HOH
HOH
614
A
HOH
325
4
HOH
HOH
615
A
HOH
328
4
HOH
HOH
616
A
HOH
329
4
HOH
HOH
617
A
HOH
330
4
HOH
HOH
618
A
HOH
332
4
HOH
HOH
619
A
HOH
333
4
HOH
HOH
620
A
HOH
334
4
HOH
HOH
621
A
HOH
339
4
HOH
HOH
622
A
HOH
341
4
HOH
HOH
623
A
HOH
342
4
HOH
HOH
624
A
HOH
343
4
HOH
HOH
625
A
HOH
349
4
HOH
HOH
626
A
HOH
351
4
HOH
HOH
627
A
HOH
354
4
HOH
HOH
628
A
HOH
361
4
HOH
HOH
629
A
HOH
362
4
HOH
HOH
630
A
HOH
363
4
HOH
HOH
631
A
HOH
364
4
HOH
HOH
632
A
HOH
365
4
HOH
HOH
633
A
HOH
366
4
HOH
HOH
634
A
HOH
370
4
HOH
HOH
635
A
HOH
371
4
HOH
HOH
636
A
HOH
372
4
HOH
HOH
637
A
HOH
373
4
HOH
HOH
638
A
HOH
375
4
HOH
HOH
639
A
HOH
379
4
HOH
HOH
640
A
HOH
389
4
HOH
HOH
641
A
HOH
390
4
HOH
HOH
642
A
HOH
399
4
HOH
HOH
643
A
HOH
400
4
HOH
HOH
644
A
HOH
411
4
HOH
HOH
645
A
HOH
412
4
HOH
HOH
646
A
HOH
413
4
HOH
HOH
647
A
HOH
416
4
HOH
HOH
648
A
HOH
419
4
HOH
HOH
649
A
HOH
148
4
HOH
HOH
501
B
HOH
420
4
HOH
HOH
502
B
HOH
1
4
HOH
HOH
503
B
HOH
2
4
HOH
HOH
504
B
HOH
5
4
HOH
HOH
505
B
HOH
7
4
HOH
HOH
506
B
HOH
8
4
HOH
HOH
507
B
HOH
14
4
HOH
HOH
508
B
HOH
15
4
HOH
HOH
509
B
HOH
16
4
HOH
HOH
510
B
HOH
19
4
HOH
HOH
511
B
HOH
22
4
HOH
HOH
512
B
HOH
26
4
HOH
HOH
513
B
HOH
27
4
HOH
HOH
514
B
HOH
29
4
HOH
HOH
515
B
HOH
30
4
HOH
HOH
516
B
HOH
31
4
HOH
HOH
517
B
HOH
33
4
HOH
HOH
518
B
HOH
35
4
HOH
HOH
519
B
HOH
37
4
HOH
HOH
520
B
HOH
39
4
HOH
HOH
521
B
HOH
42
4
HOH
HOH
522
B
HOH
45
4
HOH
HOH
523
B
HOH
46
4
HOH
HOH
524
B
HOH
50
4
HOH
HOH
525
B
HOH
52
4
HOH
HOH
526
B
HOH
53
4
HOH
HOH
527
B
HOH
54
4
HOH
HOH
528
B
HOH
56
4
HOH
HOH
529
B
HOH
58
4
HOH
HOH
530
B
HOH
59
4
HOH
HOH
531
B
HOH
60
4
HOH
HOH
532
B
HOH
61
4
HOH
HOH
533
B
HOH
62
4
HOH
HOH
534
B
HOH
63
4
HOH
HOH
535
B
HOH
64
4
HOH
HOH
536
B
HOH
66
4
HOH
HOH
537
B
HOH
67
4
HOH
HOH
538
B
HOH
68
4
HOH
HOH
539
B
HOH
69
4
HOH
HOH
540
B
HOH
70
4
HOH
HOH
541
B
HOH
71
4
HOH
HOH
542
B
HOH
81
4
HOH
HOH
543
B
HOH
86
4
HOH
HOH
544
B
HOH
91
4
HOH
HOH
545
B
HOH
92
4
HOH
HOH
546
B
HOH
93
4
HOH
HOH
547
B
HOH
97
4
HOH
HOH
548
B
HOH
99
4
HOH
HOH
549
B
HOH
102
4
HOH
HOH
550
B
HOH
104
4
HOH
HOH
551
B
HOH
108
4
HOH
HOH
552
B
HOH
110
4
HOH
HOH
553
B
HOH
116
4
HOH
HOH
554
B
HOH
117
4
HOH
HOH
555
B
HOH
118
4
HOH
HOH
556
B
HOH
120
4
HOH
HOH
557
B
HOH
121
4
HOH
HOH
558
B
HOH
123
4
HOH
HOH
559
B
HOH
129
4
HOH
HOH
560
B
HOH
135
4
HOH
HOH
561
B
HOH
136
4
HOH
HOH
562
B
HOH
137
4
HOH
HOH
563
B
HOH
139
4
HOH
HOH
564
B
HOH
141
4
HOH
HOH
565
B
HOH
158
4
HOH
HOH
566
B
HOH
163
4
HOH
HOH
567
B
HOH
165
4
HOH
HOH
568
B
HOH
170
4
HOH
HOH
569
B
HOH
172
4
HOH
HOH
570
B
HOH
174
4
HOH
HOH
571
B
HOH
177
4
HOH
HOH
572
B
HOH
179
4
HOH
HOH
573
B
HOH
183
4
HOH
HOH
574
B
HOH
189
4
HOH
HOH
575
B
HOH
193
4
HOH
HOH
576
B
HOH
195
4
HOH
HOH
577
B
HOH
197
4
HOH
HOH
578
B
HOH
199
4
HOH
HOH
579
B
HOH
200
4
HOH
HOH
580
B
HOH
205
4
HOH
HOH
581
B
HOH
206
4
HOH
HOH
582
B
HOH
207
4
HOH
HOH
583
B
HOH
209
4
HOH
HOH
584
B
HOH
215
4
HOH
HOH
585
B
HOH
216
4
HOH
HOH
586
B
HOH
219
4
HOH
HOH
587
B
HOH
227
4
HOH
HOH
588
B
HOH
234
4
HOH
HOH
589
B
HOH
235
4
HOH
HOH
590
B
HOH
239
4
HOH
HOH
591
B
HOH
240
4
HOH
HOH
592
B
HOH
242
4
HOH
HOH
593
B
HOH
243
4
HOH
HOH
594
B
HOH
245
4
HOH
HOH
595
B
HOH
247
4
HOH
HOH
596
B
HOH
254
4
HOH
HOH
597
B
HOH
258
4
HOH
HOH
598
B
HOH
262
4
HOH
HOH
599
B
HOH
263
4
HOH
HOH
600
B
HOH
266
4
HOH
HOH
601
B
HOH
267
4
HOH
HOH
602
B
HOH
268
4
HOH
HOH
603
B
HOH
273
4
HOH
HOH
604
B
HOH
274
4
HOH
HOH
605
B
HOH
275
4
HOH
HOH
606
B
HOH
277
4
HOH
HOH
607
B
HOH
278
4
HOH
HOH
608
B
HOH
282
4
HOH
HOH
609
B
HOH
284
4
HOH
HOH
610
B
HOH
285
4
HOH
HOH
611
B
HOH
286
4
HOH
HOH
612
B
HOH
288
4
HOH
HOH
613
B
HOH
293
4
HOH
HOH
614
B
HOH
294
4
HOH
HOH
615
B
HOH
295
4
HOH
HOH
616
B
HOH
296
4
HOH
HOH
617
B
HOH
297
4
HOH
HOH
618
B
HOH
302
4
HOH
HOH
619
B
HOH
308
4
HOH
HOH
620
B
HOH
309
4
HOH
HOH
621
B
HOH
310
4
HOH
HOH
622
B
HOH
311
4
HOH
HOH
623
B
HOH
319
4
HOH
HOH
624
B
HOH
320
4
HOH
HOH
625
B
HOH
322
4
HOH
HOH
626
B
HOH
326
4
HOH
HOH
627
B
HOH
336
4
HOH
HOH
628
B
HOH
337
4
HOH
HOH
629
B
HOH
338
4
HOH
HOH
630
B
HOH
345
4
HOH
HOH
631
B
HOH
346
4
HOH
HOH
632
B
HOH
347
4
HOH
HOH
633
B
HOH
348
4
HOH
HOH
634
B
HOH
352
4
HOH
HOH
635
B
HOH
353
4
HOH
HOH
636
B
HOH
358
4
HOH
HOH
637
B
HOH
368
4
HOH
HOH
638
B
HOH
369
4
HOH
HOH
639
B
HOH
380
4
HOH
HOH
640
B
HOH
381
4
HOH
HOH
641
B
HOH
382
4
HOH
HOH
642
B
HOH
383
4
HOH
HOH
643
B
HOH
384
4
HOH
HOH
644
B
HOH
385
4
HOH
HOH
645
B
HOH
387
4
HOH
HOH
646
B
HOH
391
4
HOH
HOH
647
B
HOH
392
4
HOH
HOH
648
B
HOH
394
4
HOH
HOH
649
B
HOH
396
4
HOH
HOH
650
B
HOH
398
4
HOH
HOH
651
B
HOH
401
4
HOH
HOH
652
B
HOH
402
4
HOH
HOH
653
B
HOH
406
4
HOH
HOH
654
B
HOH
407
4
HOH
HOH
655
B
HOH
409
4
HOH
HOH
656
B
HOH
410
4
HOH
HOH
657
B
HOH
414
4
HOH
HOH
658
B
HOH
415
4
HOH
HOH
659
B
HOH
417
4
HOH
HOH
660
B
HOH
418
4
HOH
HOH
661
B
HOH
404
4
HOH
HOH
101
E
HOH
408
4
HOH
HOH
101
F
SER
1
n
1
SER
1
A
GLY
2
n
2
GLY
2
A
PHE
3
n
3
PHE
3
A
ARG
4
n
4
ARG
4
A
LYS
5
n
5
LYS
5
A
MET
6
n
6
MET
6
A
ALA
7
n
7
ALA
7
A
PHE
8
n
8
PHE
8
A
PRO
9
n
9
PRO
9
A
SER
10
n
10
SER
10
A
GLY
11
n
11
GLY
11
A
LYS
12
n
12
LYS
12
A
VAL
13
n
13
VAL
13
A
GLU
14
n
14
GLU
14
A
GLY
15
n
15
GLY
15
A
CYS
16
n
16
CYS
16
A
MET
17
n
17
MET
17
A
VAL
18
n
18
VAL
18
A
GLN
19
n
19
GLN
19
A
VAL
20
n
20
VAL
20
A
THR
21
n
21
THR
21
A
CYS
22
n
22
CYS
22
A
GLY
23
n
23
GLY
23
A
THR
24
n
24
THR
24
A
THR
25
n
25
THR
25
A
THR
26
n
26
THR
26
A
LEU
27
n
27
LEU
27
A
ASN
28
n
28
ASN
28
A
GLY
29
n
29
GLY
29
A
LEU
30
n
30
LEU
30
A
TRP
31
n
31
TRP
31
A
LEU
32
n
32
LEU
32
A
ASP
33
n
33
ASP
33
A
ASP
34
n
34
ASP
34
A
THR
35
n
35
THR
35
A
VAL
36
n
36
VAL
36
A
TYR
37
n
37
TYR
37
A
CYS
38
n
38
CYS
38
A
PRO
39
n
39
PRO
39
A
ARG
40
n
40
ARG
40
A
HIS
41
n
41
HIS
41
A
VAL
42
n
42
VAL
42
A
ILE
43
n
43
ILE
43
A
CYS
44
n
44
CYS
44
A
THR
45
n
45
THR
45
A
ALA
46
n
46
ALA
46
A
GLU
47
n
47
GLU
47
A
ASP
48
n
48
ASP
48
A
MET
49
n
49
MET
49
A
LEU
50
n
50
LEU
50
A
ASN
51
n
51
ASN
51
A
PRO
52
n
52
PRO
52
A
ASN
53
n
53
ASN
53
A
TYR
54
n
54
TYR
54
A
GLU
55
n
55
GLU
55
A
ASP
56
n
56
ASP
56
A
LEU
57
n
57
LEU
57
A
LEU
58
n
58
LEU
58
A
ILE
59
n
59
ILE
59
A
ARG
60
n
60
ARG
60
A
LYS
61
n
61
LYS
61
A
SER
62
n
62
SER
62
A
ASN
63
n
63
ASN
63
A
HIS
64
n
64
HIS
64
A
SER
65
n
65
SER
65
A
PHE
66
n
66
PHE
66
A
LEU
67
n
67
LEU
67
A
VAL
68
n
68
VAL
68
A
GLN
69
n
69
GLN
69
A
ALA
70
n
70
ALA
70
A
GLY
71
n
71
GLY
71
A
ASN
72
n
72
ASN
72
A
VAL
73
n
73
VAL
73
A
GLN
74
n
74
GLN
74
A
LEU
75
n
75
LEU
75
A
ARG
76
n
76
ARG
76
A
VAL
77
n
77
VAL
77
A
ILE
78
n
78
ILE
78
A
GLY
79
n
79
GLY
79
A
HIS
80
n
80
HIS
80
A
SER
81
n
81
SER
81
A
MET
82
n
82
MET
82
A
GLN
83
n
83
GLN
83
A
ASN
84
n
84
ASN
84
A
CYS
85
n
85
CYS
85
A
LEU
86
n
86
LEU
86
A
LEU
87
n
87
LEU
87
A
ARG
88
n
88
ARG
88
A
LEU
89
n
89
LEU
89
A
LYS
90
n
90
LYS
90
A
VAL
91
n
91
VAL
91
A
ASP
92
n
92
ASP
92
A
THR
93
n
93
THR
93
A
SER
94
n
94
SER
94
A
ASN
95
n
95
ASN
95
A
PRO
96
n
96
PRO
96
A
LYS
97
n
97
LYS
97
A
THR
98
n
98
THR
98
A
PRO
99
n
99
PRO
99
A
LYS
100
n
100
LYS
100
A
TYR
101
n
101
TYR
101
A
LYS
102
n
102
LYS
102
A
PHE
103
n
103
PHE
103
A
VAL
104
n
104
VAL
104
A
ARG
105
n
105
ARG
105
A
ILE
106
n
106
ILE
106
A
GLN
107
n
107
GLN
107
A
PRO
108
n
108
PRO
108
A
GLY
109
n
109
GLY
109
A
GLN
110
n
110
GLN
110
A
THR
111
n
111
THR
111
A
PHE
112
n
112
PHE
112
A
SER
113
n
113
SER
113
A
VAL
114
n
114
VAL
114
A
LEU
115
n
115
LEU
115
A
ALA
116
n
116
ALA
116
A
CYS
117
n
117
CYS
117
A
TYR
118
n
118
TYR
118
A
ASN
119
n
119
ASN
119
A
GLY
120
n
120
GLY
120
A
SER
121
n
121
SER
121
A
PRO
122
n
122
PRO
122
A
SER
123
n
123
SER
123
A
GLY
124
n
124
GLY
124
A
VAL
125
n
125
VAL
125
A
TYR
126
n
126
TYR
126
A
GLN
127
n
127
GLN
127
A
CYS
128
n
128
CYS
128
A
ALA
129
n
129
ALA
129
A
MET
130
n
130
MET
130
A
ARG
131
n
131
ARG
131
A
PRO
132
n
132
PRO
132
A
ASN
133
n
133
ASN
133
A
HIS
134
n
134
HIS
134
A
THR
135
n
135
THR
135
A
ILE
136
n
136
ILE
136
A
LYS
137
n
137
LYS
137
A
GLY
138
n
138
GLY
138
A
SER
139
n
139
SER
139
A
PHE
140
n
140
PHE
140
A
LEU
141
n
141
LEU
141
A
ASN
142
n
142
ASN
142
A
GLY
143
n
143
GLY
143
A
SER
144
n
144
SER
144
A
CYS
145
n
145
CYS
145
A
GLY
146
n
146
GLY
146
A
SER
147
n
147
SER
147
A
VAL
148
n
148
VAL
148
A
GLY
149
n
149
GLY
149
A
PHE
150
n
150
PHE
150
A
ASN
151
n
151
ASN
151
A
ILE
152
n
152
ILE
152
A
ASP
153
n
153
ASP
153
A
TYR
154
n
154
TYR
154
A
ASP
155
n
155
ASP
155
A
CYS
156
n
156
CYS
156
A
VAL
157
n
157
VAL
157
A
SER
158
n
158
SER
158
A
PHE
159
n
159
PHE
159
A
CYS
160
n
160
CYS
160
A
TYR
161
n
161
TYR
161
A
MET
162
n
162
MET
162
A
HIS
163
n
163
HIS
163
A
HIS
164
n
164
HIS
164
A
MET
165
n
165
MET
165
A
GLU
166
n
166
GLU
166
A
LEU
167
n
167
LEU
167
A
PRO
168
n
168
PRO
168
A
THR
169
n
169
THR
169
A
GLY
170
n
170
GLY
170
A
VAL
171
n
171
VAL
171
A
HIS
172
n
172
HIS
172
A
ALA
173
n
173
ALA
173
A
GLY
174
n
174
GLY
174
A
THR
175
n
175
THR
175
A
ASP
176
n
176
ASP
176
A
LEU
177
n
177
LEU
177
A
GLU
178
n
178
GLU
178
A
GLY
179
n
179
GLY
179
A
LYS
180
n
180
LYS
180
A
PHE
181
n
181
PHE
181
A
TYR
182
n
182
TYR
182
A
GLY
183
n
183
GLY
183
A
PRO
184
n
184
PRO
184
A
PHE
185
n
185
PHE
185
A
VAL
186
n
186
VAL
186
A
ASP
187
n
187
ASP
187
A
ARG
188
n
188
ARG
188
A
GLN
189
n
189
GLN
189
A
THR
190
n
190
THR
190
A
ALA
191
n
191
ALA
191
A
GLN
192
n
192
GLN
192
A
ALA
193
n
193
ALA
193
A
ALA
194
n
194
ALA
194
A
GLY
195
n
195
GLY
195
A
THR
196
n
196
THR
196
A
ASP
197
n
197
ASP
197
A
THR
198
n
198
THR
198
A
THR
199
n
199
THR
199
A
ILE
200
n
200
ILE
200
A
THR
201
n
201
THR
201
A
LEU
202
n
202
LEU
202
A
ASN
203
n
203
ASN
203
A
VAL
204
n
204
VAL
204
A
LEU
205
n
205
LEU
205
A
ALA
206
n
206
ALA
206
A
TRP
207
n
207
TRP
207
A
LEU
208
n
208
LEU
208
A
TYR
209
n
209
TYR
209
A
ALA
210
n
210
ALA
210
A
ALA
211
n
211
ALA
211
A
VAL
212
n
212
VAL
212
A
ILE
213
n
213
ILE
213
A
ASN
214
n
214
ASN
214
A
GLY
215
n
215
GLY
215
A
ASP
216
n
216
ASP
216
A
ARG
217
n
217
ARG
217
A
TRP
218
n
218
TRP
218
A
PHE
219
n
219
PHE
219
A
LEU
220
n
220
LEU
220
A
ASN
221
n
221
ASN
221
A
ARG
222
n
222
ARG
222
A
PHE
223
n
223
PHE
223
A
THR
224
n
224
THR
224
A
THR
225
n
225
THR
225
A
THR
226
n
226
THR
226
A
LEU
227
n
227
LEU
227
A
ASN
228
n
228
ASN
228
A
ASP
229
n
229
ASP
229
A
PHE
230
n
230
PHE
230
A
ASN
231
n
231
ASN
231
A
LEU
232
n
232
LEU
232
A
VAL
233
n
233
VAL
233
A
ALA
234
n
234
ALA
234
A
MET
235
n
235
MET
235
A
LYS
236
n
236
LYS
236
A
TYR
237
n
237
TYR
237
A
ASN
238
n
238
ASN
238
A
TYR
239
n
239
TYR
239
A
GLU
240
n
240
GLU
240
A
PRO
241
n
241
PRO
241
A
LEU
242
n
242
LEU
242
A
THR
243
n
243
THR
243
A
GLN
244
n
244
GLN
244
A
ASP
245
n
245
ASP
245
A
HIS
246
n
246
HIS
246
A
VAL
247
n
247
VAL
247
A
ASP
248
n
248
ASP
248
A
ILE
249
n
249
ILE
249
A
LEU
250
n
250
LEU
250
A
GLY
251
n
251
GLY
251
A
PRO
252
n
252
PRO
252
A
LEU
253
n
253
LEU
253
A
SER
254
n
254
SER
254
A
ALA
255
n
255
ALA
255
A
GLN
256
n
256
GLN
256
A
THR
257
n
257
THR
257
A
GLY
258
n
258
GLY
258
A
ILE
259
n
259
ILE
259
A
ALA
260
n
260
ALA
260
A
VAL
261
n
261
VAL
261
A
LEU
262
n
262
LEU
262
A
ASP
263
n
263
ASP
263
A
MET
264
n
264
MET
264
A
CYS
265
n
265
CYS
265
A
ALA
266
n
266
ALA
266
A
ALA
267
n
267
ALA
267
A
LEU
268
n
268
LEU
268
A
LYS
269
n
269
LYS
269
A
GLU
270
n
270
GLU
270
A
LEU
271
n
271
LEU
271
A
LEU
272
n
272
LEU
272
A
GLN
273
n
273
GLN
273
A
ASN
274
n
274
ASN
274
A
GLY
275
n
275
GLY
275
A
MET
276
n
276
MET
276
A
ASN
277
n
277
ASN
277
A
GLY
278
n
278
GLY
278
A
ARG
279
n
279
ARG
279
A
THR
280
n
280
THR
280
A
ILE
281
n
281
ILE
281
A
LEU
282
n
282
LEU
282
A
GLY
283
n
283
GLY
283
A
SER
284
n
284
SER
284
A
THR
285
n
285
THR
285
A
ILE
286
n
286
ILE
286
A
LEU
287
n
287
LEU
287
A
GLU
288
n
288
GLU
288
A
ASP
289
n
289
ASP
289
A
GLU
290
n
290
GLU
290
A
PHE
291
n
291
PHE
291
A
THR
292
n
292
THR
292
A
PRO
293
n
293
PRO
293
A
PHE
294
n
294
PHE
294
A
ASP
295
n
295
ASP
295
A
VAL
296
n
296
VAL
296
A
VAL
297
n
297
VAL
297
A
ARG
298
n
298
ARG
298
A
GLN
299
n
299
GLN
299
A
CYS
300
n
300
CYS
300
A
SER
301
n
301
SER
301
A
n
302
302
A
n
303
303
A
n
304
304
A
n
305
305
A
n
306
306
A
SER
1
n
1
SER
1
B
GLY
2
n
2
GLY
2
B
PHE
3
n
3
PHE
3
B
ARG
4
n
4
ARG
4
B
LYS
5
n
5
LYS
5
B
MET
6
n
6
MET
6
B
ALA
7
n
7
ALA
7
B
PHE
8
n
8
PHE
8
B
PRO
9
n
9
PRO
9
B
SER
10
n
10
SER
10
B
GLY
11
n
11
GLY
11
B
LYS
12
n
12
LYS
12
B
VAL
13
n
13
VAL
13
B
GLU
14
n
14
GLU
14
B
GLY
15
n
15
GLY
15
B
CYS
16
n
16
CYS
16
B
MET
17
n
17
MET
17
B
VAL
18
n
18
VAL
18
B
GLN
19
n
19
GLN
19
B
VAL
20
n
20
VAL
20
B
THR
21
n
21
THR
21
B
CYS
22
n
22
CYS
22
B
GLY
23
n
23
GLY
23
B
THR
24
n
24
THR
24
B
THR
25
n
25
THR
25
B
THR
26
n
26
THR
26
B
LEU
27
n
27
LEU
27
B
ASN
28
n
28
ASN
28
B
GLY
29
n
29
GLY
29
B
LEU
30
n
30
LEU
30
B
TRP
31
n
31
TRP
31
B
LEU
32
n
32
LEU
32
B
ASP
33
n
33
ASP
33
B
ASP
34
n
34
ASP
34
B
THR
35
n
35
THR
35
B
VAL
36
n
36
VAL
36
B
TYR
37
n
37
TYR
37
B
CYS
38
n
38
CYS
38
B
PRO
39
n
39
PRO
39
B
ARG
40
n
40
ARG
40
B
HIS
41
n
41
HIS
41
B
VAL
42
n
42
VAL
42
B
ILE
43
n
43
ILE
43
B
CYS
44
n
44
CYS
44
B
THR
45
n
45
THR
45
B
ALA
46
n
46
ALA
46
B
GLU
47
n
47
GLU
47
B
ASP
48
n
48
ASP
48
B
MET
49
n
49
MET
49
B
LEU
50
n
50
LEU
50
B
ASN
51
n
51
ASN
51
B
PRO
52
n
52
PRO
52
B
ASN
53
n
53
ASN
53
B
TYR
54
n
54
TYR
54
B
GLU
55
n
55
GLU
55
B
ASP
56
n
56
ASP
56
B
LEU
57
n
57
LEU
57
B
LEU
58
n
58
LEU
58
B
ILE
59
n
59
ILE
59
B
ARG
60
n
60
ARG
60
B
LYS
61
n
61
LYS
61
B
SER
62
n
62
SER
62
B
ASN
63
n
63
ASN
63
B
HIS
64
n
64
HIS
64
B
SER
65
n
65
SER
65
B
PHE
66
n
66
PHE
66
B
LEU
67
n
67
LEU
67
B
VAL
68
n
68
VAL
68
B
GLN
69
n
69
GLN
69
B
ALA
70
n
70
ALA
70
B
GLY
71
n
71
GLY
71
B
ASN
72
n
72
ASN
72
B
VAL
73
n
73
VAL
73
B
GLN
74
n
74
GLN
74
B
LEU
75
n
75
LEU
75
B
ARG
76
n
76
ARG
76
B
VAL
77
n
77
VAL
77
B
ILE
78
n
78
ILE
78
B
GLY
79
n
79
GLY
79
B
HIS
80
n
80
HIS
80
B
SER
81
n
81
SER
81
B
MET
82
n
82
MET
82
B
GLN
83
n
83
GLN
83
B
ASN
84
n
84
ASN
84
B
CYS
85
n
85
CYS
85
B
LEU
86
n
86
LEU
86
B
LEU
87
n
87
LEU
87
B
ARG
88
n
88
ARG
88
B
LEU
89
n
89
LEU
89
B
LYS
90
n
90
LYS
90
B
VAL
91
n
91
VAL
91
B
ASP
92
n
92
ASP
92
B
THR
93
n
93
THR
93
B
SER
94
n
94
SER
94
B
ASN
95
n
95
ASN
95
B
PRO
96
n
96
PRO
96
B
LYS
97
n
97
LYS
97
B
THR
98
n
98
THR
98
B
PRO
99
n
99
PRO
99
B
LYS
100
n
100
LYS
100
B
TYR
101
n
101
TYR
101
B
LYS
102
n
102
LYS
102
B
PHE
103
n
103
PHE
103
B
VAL
104
n
104
VAL
104
B
ARG
105
n
105
ARG
105
B
ILE
106
n
106
ILE
106
B
GLN
107
n
107
GLN
107
B
PRO
108
n
108
PRO
108
B
GLY
109
n
109
GLY
109
B
GLN
110
n
110
GLN
110
B
THR
111
n
111
THR
111
B
PHE
112
n
112
PHE
112
B
SER
113
n
113
SER
113
B
VAL
114
n
114
VAL
114
B
LEU
115
n
115
LEU
115
B
ALA
116
n
116
ALA
116
B
CYS
117
n
117
CYS
117
B
TYR
118
n
118
TYR
118
B
ASN
119
n
119
ASN
119
B
GLY
120
n
120
GLY
120
B
SER
121
n
121
SER
121
B
PRO
122
n
122
PRO
122
B
SER
123
n
123
SER
123
B
GLY
124
n
124
GLY
124
B
VAL
125
n
125
VAL
125
B
TYR
126
n
126
TYR
126
B
GLN
127
n
127
GLN
127
B
CYS
128
n
128
CYS
128
B
ALA
129
n
129
ALA
129
B
MET
130
n
130
MET
130
B
ARG
131
n
131
ARG
131
B
PRO
132
n
132
PRO
132
B
ASN
133
n
133
ASN
133
B
HIS
134
n
134
HIS
134
B
THR
135
n
135
THR
135
B
ILE
136
n
136
ILE
136
B
LYS
137
n
137
LYS
137
B
GLY
138
n
138
GLY
138
B
SER
139
n
139
SER
139
B
PHE
140
n
140
PHE
140
B
LEU
141
n
141
LEU
141
B
ASN
142
n
142
ASN
142
B
GLY
143
n
143
GLY
143
B
SER
144
n
144
SER
144
B
CYS
145
n
145
CYS
145
B
GLY
146
n
146
GLY
146
B
SER
147
n
147
SER
147
B
VAL
148
n
148
VAL
148
B
GLY
149
n
149
GLY
149
B
PHE
150
n
150
PHE
150
B
ASN
151
n
151
ASN
151
B
ILE
152
n
152
ILE
152
B
ASP
153
n
153
ASP
153
B
TYR
154
n
154
TYR
154
B
ASP
155
n
155
ASP
155
B
CYS
156
n
156
CYS
156
B
VAL
157
n
157
VAL
157
B
SER
158
n
158
SER
158
B
PHE
159
n
159
PHE
159
B
CYS
160
n
160
CYS
160
B
TYR
161
n
161
TYR
161
B
MET
162
n
162
MET
162
B
HIS
163
n
163
HIS
163
B
HIS
164
n
164
HIS
164
B
MET
165
n
165
MET
165
B
GLU
166
n
166
GLU
166
B
LEU
167
n
167
LEU
167
B
PRO
168
n
168
PRO
168
B
THR
169
n
169
THR
169
B
GLY
170
n
170
GLY
170
B
VAL
171
n
171
VAL
171
B
HIS
172
n
172
HIS
172
B
ALA
173
n
173
ALA
173
B
GLY
174
n
174
GLY
174
B
THR
175
n
175
THR
175
B
ASP
176
n
176
ASP
176
B
LEU
177
n
177
LEU
177
B
GLU
178
n
178
GLU
178
B
GLY
179
n
179
GLY
179
B
LYS
180
n
180
LYS
180
B
PHE
181
n
181
PHE
181
B
TYR
182
n
182
TYR
182
B
GLY
183
n
183
GLY
183
B
PRO
184
n
184
PRO
184
B
PHE
185
n
185
PHE
185
B
VAL
186
n
186
VAL
186
B
ASP
187
n
187
ASP
187
B
ARG
188
n
188
ARG
188
B
GLN
189
n
189
GLN
189
B
THR
190
n
190
THR
190
B
ALA
191
n
191
ALA
191
B
GLN
192
n
192
GLN
192
B
ALA
193
n
193
ALA
193
B
ALA
194
n
194
ALA
194
B
GLY
195
n
195
GLY
195
B
THR
196
n
196
THR
196
B
ASP
197
n
197
ASP
197
B
THR
198
n
198
THR
198
B
THR
199
n
199
THR
199
B
ILE
200
n
200
ILE
200
B
THR
201
n
201
THR
201
B
LEU
202
n
202
LEU
202
B
ASN
203
n
203
ASN
203
B
VAL
204
n
204
VAL
204
B
LEU
205
n
205
LEU
205
B
ALA
206
n
206
ALA
206
B
TRP
207
n
207
TRP
207
B
LEU
208
n
208
LEU
208
B
TYR
209
n
209
TYR
209
B
ALA
210
n
210
ALA
210
B
ALA
211
n
211
ALA
211
B
VAL
212
n
212
VAL
212
B
ILE
213
n
213
ILE
213
B
ASN
214
n
214
ASN
214
B
GLY
215
n
215
GLY
215
B
ASP
216
n
216
ASP
216
B
ARG
217
n
217
ARG
217
B
TRP
218
n
218
TRP
218
B
PHE
219
n
219
PHE
219
B
LEU
220
n
220
LEU
220
B
ASN
221
n
221
ASN
221
B
ARG
222
n
222
ARG
222
B
PHE
223
n
223
PHE
223
B
THR
224
n
224
THR
224
B
THR
225
n
225
THR
225
B
THR
226
n
226
THR
226
B
LEU
227
n
227
LEU
227
B
ASN
228
n
228
ASN
228
B
ASP
229
n
229
ASP
229
B
PHE
230
n
230
PHE
230
B
ASN
231
n
231
ASN
231
B
LEU
232
n
232
LEU
232
B
VAL
233
n
233
VAL
233
B
ALA
234
n
234
ALA
234
B
MET
235
n
235
MET
235
B
LYS
236
n
236
LYS
236
B
TYR
237
n
237
TYR
237
B
ASN
238
n
238
ASN
238
B
TYR
239
n
239
TYR
239
B
GLU
240
n
240
GLU
240
B
PRO
241
n
241
PRO
241
B
LEU
242
n
242
LEU
242
B
THR
243
n
243
THR
243
B
GLN
244
n
244
GLN
244
B
ASP
245
n
245
ASP
245
B
HIS
246
n
246
HIS
246
B
VAL
247
n
247
VAL
247
B
ASP
248
n
248
ASP
248
B
ILE
249
n
249
ILE
249
B
LEU
250
n
250
LEU
250
B
GLY
251
n
251
GLY
251
B
PRO
252
n
252
PRO
252
B
LEU
253
n
253
LEU
253
B
SER
254
n
254
SER
254
B
ALA
255
n
255
ALA
255
B
GLN
256
n
256
GLN
256
B
THR
257
n
257
THR
257
B
GLY
258
n
258
GLY
258
B
ILE
259
n
259
ILE
259
B
ALA
260
n
260
ALA
260
B
VAL
261
n
261
VAL
261
B
LEU
262
n
262
LEU
262
B
ASP
263
n
263
ASP
263
B
MET
264
n
264
MET
264
B
CYS
265
n
265
CYS
265
B
ALA
266
n
266
ALA
266
B
ALA
267
n
267
ALA
267
B
LEU
268
n
268
LEU
268
B
LYS
269
n
269
LYS
269
B
GLU
270
n
270
GLU
270
B
LEU
271
n
271
LEU
271
B
LEU
272
n
272
LEU
272
B
GLN
273
n
273
GLN
273
B
ASN
274
n
274
ASN
274
B
GLY
275
n
275
GLY
275
B
MET
276
n
276
MET
276
B
ASN
277
n
277
ASN
277
B
GLY
278
n
278
GLY
278
B
ARG
279
n
279
ARG
279
B
THR
280
n
280
THR
280
B
ILE
281
n
281
ILE
281
B
LEU
282
n
282
LEU
282
B
GLY
283
n
283
GLY
283
B
SER
284
n
284
SER
284
B
THR
285
n
285
THR
285
B
ILE
286
n
286
ILE
286
B
LEU
287
n
287
LEU
287
B
GLU
288
n
288
GLU
288
B
ASP
289
n
289
ASP
289
B
GLU
290
n
290
GLU
290
B
PHE
291
n
291
PHE
291
B
THR
292
n
292
THR
292
B
PRO
293
n
293
PRO
293
B
PHE
294
n
294
PHE
294
B
ASP
295
n
295
ASP
295
B
VAL
296
n
296
VAL
296
B
VAL
297
n
297
VAL
297
B
ARG
298
n
298
ARG
298
B
GLN
299
n
299
GLN
299
B
CYS
300
n
300
CYS
300
B
SER
301
n
301
SER
301
B
GLY
302
n
302
GLY
302
B
VAL
303
n
303
VAL
303
B
THR
304
n
304
THR
304
B
PHE
305
n
305
PHE
305
B
GLN
306
n
306
GLN
306
B
C4Z
1
n
1
PHQ
1
E
C4Z
1
n
2
ALA
2
E
C4Z
1
n
3
VAL
3
E
C4Z
1
n
4
LEU
4
E
C4Z
1
n
5
0JU
5
E
C4Z
2
n
1
PHQ
1
F
C4Z
2
n
2
ALA
2
F
C4Z
2
n
3
VAL
3
F
C4Z
2
n
4
LEU
4
F
C4Z
2
n
5
0JU
5
F
author_and_software_defined_assembly
PISA
4
tetrameric
5830
-9
25210
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
75
A
O
LEU
75
A
N
VAL
68
A
N
VAL
68
A
O
GLN
69
A
O
GLN
69
A
N
GLN
19
A
N
GLN
19
A
N
VAL
18
A
N
VAL
18
A
O
GLY
29
A
O
GLY
29
A
N
LEU
30
A
N
LEU
30
A
O
TYR
37
A
O
TYR
37
A
N
CYS
38
A
N
CYS
38
A
O
LEU
87
A
O
LEU
87
A
O
ARG
88
A
O
ARG
88
A
N
SER
81
A
N
SER
81
A
N
LYS
100
A
N
LYS
100
A
O
VAL
157
A
O
VAL
157
A
N
MET
165
A
N
MET
165
A
O
ALA
173
A
O
ALA
173
A
O
SER
123
A
O
SER
123
A
N
ALA
116
A
N
ALA
116
A
N
SER
113
A
N
SER
113
A
O
PHE
150
A
O
PHE
150
A
N
ASN
151
A
N
ASN
151
A
O
SER
158
A
O
SER
158
A
N
GLU
166
A
N
GLU
166
E
O
VAL
3
C
O
VAL
3
B
O
VAL
73
B
O
VAL
73
B
N
ALA
70
B
N
ALA
70
B
O
LEU
67
B
O
LEU
67
B
N
THR
21
B
N
THR
21
B
N
VAL
20
B
N
VAL
20
B
O
LEU
27
B
O
LEU
27
B
N
LEU
30
B
N
LEU
30
B
O
TYR
37
B
O
TYR
37
B
N
CYS
38
B
N
CYS
38
B
O
LEU
87
B
O
LEU
87
B
O
ARG
88
B
O
ARG
88
B
N
SER
81
B
N
SER
81
B
N
LYS
102
B
N
LYS
102
B
O
PHE
159
B
O
PHE
159
B
N
MET
165
B
N
MET
165
B
O
ALA
173
B
O
ALA
173
B
O
SER
123
B
O
SER
123
B
N
ALA
116
B
N
ALA
116
B
N
SER
113
B
N
SER
113
B
O
PHE
150
B
O
PHE
150
B
N
ASN
151
B
N
ASN
151
B
O
SER
158
B
O
SER
158
B
N
GLU
166
B
N
GLU
166
F
O
VAL
3
D
O
VAL
3
1
A
GLY
302
A
GLY
302
1
Y
1
A
VAL
303
A
VAL
303
1
Y
1
A
THR
304
A
THR
304
1
Y
1
A
PHE
305
A
PHE
305
1
Y
1
A
GLN
306
A
GLN
306
1
Y
1
9.23
1.50
119.30
128.53
A
A
A
C
N
CA
GLY
PRO
PRO
183
184
184
Y
1
A
ASP
33
58.08
-113.68
1
A
HIS
41
-66.78
0.24
1
A
GLU
47
-70.26
-77.04
1
A
ASP
48
-18.93
-46.60
1
A
ASN
51
-144.54
59.78
1
A
ASN
84
50.35
-115.17
1
A
HIS
134
76.23
-0.84
1
A
TYR
154
67.11
-114.33
1
A
GLN
189
-76.14
39.40
1
A
ALA
191
-58.01
109.43
1
A
LEU
282
33.03
43.89
1
B
ASP
33
44.33
-123.08
1
B
ALA
46
-57.82
3.00
1
B
ASP
48
-54.35
-3.62
1
B
ASN
84
53.97
-124.48
1
B
TYR
154
69.06
-104.49
1
B
GLN
189
-73.92
49.54
1
B
ARG
217
-144.50
13.65
30.8581
-0.0079
-0.0000
8.2318
4.5670
0.0000
-4.5591
0.2320
0.2045
0.218
0.2057
1.950
26.276
1999
47564
4.20
99.93
0.8434
0.23
random
1
1.41
MOLECULAR REPLACEMENT
23.26
0.72
1.00
PDB ENTRY 2Q6G
ML
FLAT BULK SOLVENT MODEL
41.080
0.394
1.950
26.276
312
5105
12
0
4781
0.007
4917
1.203
6678
14.736
1779
0.075
753
0.004
867
0.2839
0.2484
1.9988
143
3265
14
100.00
0.2774
0.2287
2.0528
141
3217
14
100.00
0.2433
0.2122
2.1132
143
3244
14
100.00
0.2518
0.2092
2.1813
143
3257
14
100.00
0.2955
0.2093
2.2593
142
3246
14
100.00
0.2324
0.2107
2.3497
143
3238
14
100.00
0.2294
0.2153
2.4565
142
3238
14
100.00
0.2460
0.2148
2.5859
142
3252
14
100.00
0.2738
0.2233
2.7478
143
3268
14
100.00
0.2562
0.2175
2.9597
142
3240
14
100.00
0.2193
0.2128
3.2570
144
3271
14
100.00
0.2294
0.2005
3.7272
142
3254
14
100.00
0.2106
0.1751
4.6915
144
3276
14
100.00
0.1923
0.1956
26.2788
145
3299
14
99.00
25.390
1.95
27.20
3VB5
47614
2
2
1
100.00
1.95
2.06
1
100.0
2.06
2.18
1
100.0
2.18
2.33
1
100.0
2.33
2.52
1
100.0
2.52
2.76
1
100.0
2.76
3.08
1
100.0
3.08
3.56
1
100.0
3.56
4.36
1
100.0
4.36
6.17
1
99.9
6.17
27.20
1
98.9
data collection
CrystalClear
phasing
PHASES
refinement
PHENIX
(phenix.refine: 1.6.4_486)
data reduction
MOSFLM
data scaling
SCALA
Crystal structure of SARS-CoV 3C-like protease with C4Z
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
SER
10
A
SER
10
HELX_P
A
GLY
15
A
GLY
15
1
1
6
A
HIS
41
A
HIS
41
HELX_P
A
CYS
44
A
CYS
44
5
2
4
A
GLU
47
A
GLU
47
HELX_P
A
ASN
51
A
ASN
51
5
3
5
A
ASN
53
A
ASN
53
HELX_P
A
ARG
60
A
ARG
60
1
4
8
A
ILE
200
A
ILE
200
HELX_P
A
ASN
214
A
ASN
214
1
5
15
A
THR
226
A
THR
226
HELX_P
A
MET
235
A
MET
235
1
6
10
A
LYS
236
A
LYS
236
HELX_P
A
ASN
238
A
ASN
238
5
7
3
A
THR
243
A
THR
243
HELX_P
A
LEU
250
A
LEU
250
1
8
8
A
LEU
250
A
LEU
250
HELX_P
A
GLY
258
A
GLY
258
1
9
9
A
ALA
260
A
ALA
260
HELX_P
A
GLY
275
A
GLY
275
1
10
16
A
THR
292
A
THR
292
HELX_P
A
SER
301
A
SER
301
1
11
10
B
SER
10
B
SER
10
HELX_P
B
GLY
15
B
GLY
15
1
12
6
B
HIS
41
B
HIS
41
HELX_P
B
CYS
44
B
CYS
44
5
13
4
B
ASN
53
B
ASN
53
HELX_P
B
ARG
60
B
ARG
60
1
14
8
B
LYS
61
B
LYS
61
HELX_P
B
PHE
66
B
PHE
66
5
15
6
B
ILE
200
B
ILE
200
HELX_P
B
ASN
214
B
ASN
214
1
16
15
B
THR
226
B
THR
226
HELX_P
B
TYR
237
B
TYR
237
1
17
12
B
THR
243
B
THR
243
HELX_P
B
LEU
250
B
LEU
250
1
18
8
B
LEU
250
B
LEU
250
HELX_P
B
GLY
258
B
GLY
258
1
19
9
B
ALA
260
B
ALA
260
HELX_P
B
GLY
275
B
GLY
275
1
20
16
B
THR
292
B
THR
292
HELX_P
B
SER
301
B
SER
301
1
21
10
covale
1.658
one
A
CYS
145
A
SG
CYS
145
1_555
E
0JU
5
C
C
0JU
5
1_555
covale
1.657
one
B
CYS
145
B
SG
CYS
145
1_555
F
0JU
5
D
C
0JU
5
1_555
covale
1.337
both
sing
E
PHQ
1
C
C1
PHQ
1
1_555
E
ALA
2
C
N
ALA
2
1_555
covale
1.334
both
sing
E
LEU
4
C
C
LEU
4
1_555
E
0JU
5
C
N
0JU
5
1_555
covale
1.325
both
sing
F
PHQ
1
D
C1
PHQ
1
1_555
F
ALA
2
D
N
ALA
2
1_555
covale
1.332
both
sing
F
LEU
4
D
C
LEU
4
1_555
F
0JU
5
D
N
0JU
5
1_555
HYDROLASE/HYDROLASE INHIBITOR
HYDROLASE-HYDROLASE INHIBITOR complex
R1A_CVHSA
UNP
1
3241
P0C6U8
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGH
SMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFC
YMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ
3VB5
PDB
2
3VB5
3241
3546
3VB5
1
306
P0C6U8
A
1
1
306
3241
3546
3VB5
1
306
P0C6U8
B
1
1
306
1
5
3VB5
1
5
3VB5
E
2
1
5
1
5
3VB5
1
5
3VB5
F
2
1
5
7
3
5
7
3
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
73
A
VAL
73
A
LEU
75
A
LEU
75
A
PHE
66
A
PHE
66
A
ALA
70
A
ALA
70
A
MET
17
A
MET
17
A
CYS
22
A
CYS
22
A
THR
25
A
THR
25
A
LEU
32
A
LEU
32
A
THR
35
A
THR
35
A
PRO
39
A
PRO
39
A
LEU
86
A
LEU
86
A
VAL
91
A
VAL
91
A
VAL
77
A
VAL
77
A
GLN
83
A
GLN
83
A
LYS
100
A
LYS
100
A
PHE
103
A
PHE
103
A
CYS
156
A
CYS
156
A
GLU
166
A
GLU
166
A
HIS
172
A
HIS
172
A
THR
175
A
THR
175
A
SER
121
A
SER
121
A
ALA
129
A
ALA
129
A
THR
111
A
THR
111
A
TYR
118
A
TYR
118
A
VAL
148
A
VAL
148
A
ASP
153
A
ASP
153
A
CYS
156
A
CYS
156
A
GLU
166
A
GLU
166
E
VAL
3
C
VAL
3
E
LEU
4
C
LEU
4
B
VAL
73
B
VAL
73
B
LEU
75
B
LEU
75
B
LEU
67
B
LEU
67
B
ALA
70
B
ALA
70
B
MET
17
B
MET
17
B
CYS
22
B
CYS
22
B
THR
25
B
THR
25
B
LEU
32
B
LEU
32
B
THR
35
B
THR
35
B
PRO
39
B
PRO
39
B
LEU
86
B
LEU
86
B
VAL
91
B
VAL
91
B
VAL
77
B
VAL
77
B
GLN
83
B
GLN
83
B
TYR
101
B
TYR
101
B
PHE
103
B
PHE
103
B
CYS
156
B
CYS
156
B
GLU
166
B
GLU
166
B
HIS
172
B
HIS
172
B
THR
175
B
THR
175
B
SER
121
B
SER
121
B
ALA
129
B
ALA
129
B
THR
111
B
THR
111
B
TYR
118
B
TYR
118
B
VAL
148
B
VAL
148
B
ASP
153
B
ASP
153
B
CYS
156
B
CYS
156
B
GLU
166
B
GLU
166
F
VAL
3
D
VAL
3
F
LEU
4
D
LEU
4
BINDING SITE FOR RESIDUE EDO A 401
A
EDO
401
Software
4
BINDING SITE FOR RESIDUE EDO B 401
B
EDO
401
Software
5
BINDING SITE FOR RESIDUE EDO B 402
B
EDO
402
Software
3
BINDING SITE FOR CHAIN E OF C4Z INHIBITOR
Software
14
BINDING SITE FOR CHAIN F OF C4Z INHIBITOR
Software
17
A
THR
35
A
THR
35
4
1_555
A
SER
81
A
SER
81
4
1_555
A
ARG
88
A
ARG
88
4
1_555
A
LYS
90
A
LYS
90
4
1_555
A
ARG
105
A
ARG
105
5
1_655
A
HIS
134
A
HIS
134
5
1_655
A
GLY
183
A
GLY
183
5
1_655
B
ASP
248
B
ASP
248
5
1_555
B
HOH
628
I
HOH
5
1_555
B
ARG
105
B
ARG
105
3
1_555
B
HIS
134
B
HIS
134
3
1_555
B
GLY
183
B
GLY
183
3
1_555
A
PHE
140
A
PHE
140
14
1_555
A
LEU
141
A
LEU
141
14
1_555
A
GLY
143
A
GLY
143
14
1_555
A
SER
144
A
SER
144
14
1_555
A
CYS
145
A
CYS
145
14
1_555
A
HIS
163
A
HIS
163
14
1_555
A
HIS
164
A
HIS
164
14
1_555
A
MET
165
A
MET
165
14
1_555
A
GLU
166
A
GLU
166
14
1_555
A
LEU
167
A
LEU
167
14
1_555
A
PRO
168
A
PRO
168
14
1_555
A
HIS
172
A
HIS
172
14
1_555
A
GLN
189
A
GLN
189
14
1_555
A
THR
190
A
THR
190
14
1_555
B
HIS
41
B
HIS
41
17
1_555
B
PHE
140
B
PHE
140
17
1_555
B
LEU
141
B
LEU
141
17
1_555
B
GLY
143
B
GLY
143
17
1_555
B
SER
144
B
SER
144
17
1_555
B
CYS
145
B
CYS
145
17
1_555
B
HIS
163
B
HIS
163
17
1_555
B
HIS
164
B
HIS
164
17
1_555
B
MET
165
B
MET
165
17
1_555
B
GLU
166
B
GLU
166
17
1_555
B
LEU
167
B
LEU
167
17
1_555
B
PRO
168
B
PRO
168
17
1_555
B
GLN
189
B
GLN
189
17
1_555
B
THR
190
B
THR
190
17
1_555
B
GLN
192
B
GLN
192
17
1_555
B
HOH
655
I
HOH
17
1_555
F
HOH
101
K
HOH
17
1_555
4
P 1 21 1