0.010309 0.005952 0.000000 0.000000 0.011904 0.000000 0.000000 0.000000 0.012346 0.00000 0.00000 0.00000 Liu, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 97.000 97.000 81.000 C10 H5 N O2 171.152 1,3-dioxo-2,3-dihydro-1H-indene-2-carbonitrile non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C N 9 N C N 10 N O N 11 N C N 12 N C N 13 N N N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N N N 20 S C N 21 N C N 22 N O N 23 N C N 24 N O N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N N N 33 S C N 34 N C N 35 N O N 36 N C N 37 N C N 38 N C N 39 N N N 40 N C N 41 N N N 42 N N N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N N N 60 S C N 61 N C N 62 N O N 63 N C N 64 N C N 65 N O N 66 N N N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N N N 77 S C N 78 N C N 79 N O N 80 N C N 81 N C N 82 N O N 83 N O N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N N N 93 R C N 94 N C N 95 N O N 96 N C N 97 N S N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 N C N 111 N C N 112 N C N 113 N O N 114 N N N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 N C N 131 N C N 132 N C N 133 N O N 134 N O N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N N N 146 N C N 147 N C N 148 N O N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N N N 156 S C N 157 N C N 158 N O N 159 N C Y 160 N C Y 161 N N Y 162 N C Y 163 N C Y 164 N N N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N O N 177 N H N 178 N H N 179 N N N 180 S C N 181 N C N 182 N O N 183 S C N 184 N C N 185 N C N 186 N C N 187 N O N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N C N 208 N C N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N N N 224 S C N 225 N C N 226 N O N 227 N C N 228 N C N 229 N C N 230 N C N 231 N N N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N S N 255 N C N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C Y 273 N C Y 274 N C Y 275 N C Y 276 N C Y 277 N C Y 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C N 313 N O N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 R C N 327 N O N 328 N C N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N N Y 348 N C Y 349 N C Y 350 N C Y 351 N C Y 352 N C N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N N N 367 S C N 368 N C N 369 N O N 370 N C Y 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C N 377 N O N 378 N O N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 N C N 395 N C N 396 N C N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 1 N doub Y 2 N doub Y 3 N sing Y 4 N sing N 5 N sing N 6 N sing Y 7 N doub Y 8 N doub N 9 N sing N 10 N sing N 11 N trip Y 12 N sing N 13 N sing N 14 N doub N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N doub N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing Y 159 N sing Y 160 N doub Y 161 N doub N 162 N sing Y 163 N sing N 164 N sing Y 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing Y 267 N doub Y 268 N sing Y 269 N sing N 270 N sing Y 271 N doub N 272 N sing Y 273 N doub N 274 N sing Y 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing Y 336 N doub Y 337 N sing Y 338 N sing N 339 N sing Y 340 N doub Y 341 N sing Y 342 N sing N 343 N sing Y 344 N sing Y 345 N doub N 346 N sing Y 347 N doub N 348 N sing Y 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing Y 364 N doub Y 365 N sing Y 366 N sing N 367 N sing Y 368 N doub N 369 N sing Y 370 N doub N 371 N sing Y 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 55 2641 2648 10.1021/jm2014698 22339127 Implications of promiscuous Pim-1 kinase fragment inhibitor hydrophobic interactions for fragment-based drug design. 2012 10.2210/pdb3vbw/pdb pdb_00003vbw 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 CCD ADSC QUANTUM 210 SINGLE WAVELENGTH M x-ray 1 1.0 5.0.1 ALS SYNCHROTRON ALS BEAMLINE 5.0.1 34481.094 Serine/threonine-protein kinase pim-1 2.7.11.1 unp residues 120-404 1 man polymer 171.152 1,3-dioxo-2,3-dihydro-1H-indene-2-carbonitrile 1 syn non-polymer 18.015 water 73 nat water no no MKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL DWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDF GSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLI RWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKAAALEHHHHHHHH MKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL DWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDF GSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLI RWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKAAALEHHHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample PIM1 9606 Homo sapiens 562 Escherichia coli 1 3.19 61.44 VAPOR DIFFUSION, SITTING DROP 6.4 0.1M Imidazole, 1M Na Acetate, pH 6.4, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations 1 0 2012-03-21 1 1 2012-05-16 1 2 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-01-02 REL REL 0FN 1,3-dioxo-2,3-dihydro-1H-indene-2-carbonitrile HOH water 0FN 1 2 0FN 0FN 1 A HOH 2 3 HOH HOH 2 A HOH 4 3 HOH HOH 4 A HOH 5 3 HOH HOH 5 A HOH 6 3 HOH HOH 6 A HOH 7 3 HOH HOH 7 A HOH 8 3 HOH HOH 8 A HOH 9 3 HOH HOH 9 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 1 3 HOH HOH 327 A HOH 28 3 HOH HOH 328 A HOH 29 3 HOH HOH 329 A HOH 30 3 HOH HOH 330 A HOH 31 3 HOH HOH 331 A HOH 32 3 HOH HOH 332 A HOH 33 3 HOH HOH 333 A HOH 34 3 HOH HOH 334 A HOH 35 3 HOH HOH 335 A HOH 36 3 HOH HOH 336 A HOH 37 3 HOH HOH 337 A HOH 38 3 HOH HOH 338 A HOH 39 3 HOH HOH 339 A HOH 40 3 HOH HOH 340 A HOH 41 3 HOH HOH 341 A HOH 42 3 HOH HOH 342 A HOH 43 3 HOH HOH 343 A HOH 44 3 HOH HOH 344 A HOH 45 3 HOH HOH 345 A HOH 46 3 HOH HOH 346 A HOH 47 3 HOH HOH 347 A HOH 48 3 HOH HOH 348 A HOH 49 3 HOH HOH 349 A HOH 50 3 HOH HOH 350 A HOH 51 3 HOH HOH 351 A HOH 52 3 HOH HOH 352 A HOH 53 3 HOH HOH 353 A HOH 54 3 HOH HOH 354 A HOH 55 3 HOH HOH 355 A HOH 56 3 HOH HOH 356 A HOH 57 3 HOH HOH 357 A HOH 58 3 HOH HOH 358 A HOH 59 3 HOH HOH 359 A HOH 60 3 HOH HOH 360 A HOH 63 3 HOH HOH 361 A HOH 64 3 HOH HOH 362 A HOH 65 3 HOH HOH 363 A HOH 66 3 HOH HOH 364 A HOH 68 3 HOH HOH 365 A HOH 69 3 HOH HOH 366 A HOH 70 3 HOH HOH 367 A HOH 71 3 HOH HOH 368 A HOH 72 3 HOH HOH 369 A HOH 73 3 HOH HOH 370 A HOH 74 3 HOH HOH 371 A HOH 75 3 HOH HOH 372 A HOH 76 3 HOH HOH 373 A HOH 77 3 HOH HOH 374 A HOH 78 3 HOH HOH 375 A n 1 28 A n 2 29 A n 3 30 A n 4 31 A n 5 32 A n 6 33 A n 7 34 A GLU 35 n 8 GLU 35 A SER 36 n 9 SER 36 A GLN 37 n 10 GLN 37 A TYR 38 n 11 TYR 38 A GLN 39 n 12 GLN 39 A VAL 40 n 13 VAL 40 A GLY 41 n 14 GLY 41 A PRO 42 n 15 PRO 42 A LEU 43 n 16 LEU 43 A LEU 44 n 17 LEU 44 A GLY 45 n 18 GLY 45 A n 19 46 A n 20 47 A n 21 48 A n 22 49 A GLY 50 n 23 GLY 50 A SER 51 n 24 SER 51 A VAL 52 n 25 VAL 52 A TYR 53 n 26 TYR 53 A SER 54 n 27 SER 54 A GLY 55 n 28 GLY 55 A ILE 56 n 29 ILE 56 A ARG 57 n 30 ARG 57 A VAL 58 n 31 VAL 58 A SER 59 n 32 SER 59 A ASP 60 n 33 ASP 60 A ASN 61 n 34 ASN 61 A LEU 62 n 35 LEU 62 A PRO 63 n 36 PRO 63 A VAL 64 n 37 VAL 64 A ALA 65 n 38 ALA 65 A ILE 66 n 39 ILE 66 A LYS 67 n 40 LYS 67 A HIS 68 n 41 HIS 68 A VAL 69 n 42 VAL 69 A GLU 70 n 43 GLU 70 A LYS 71 n 44 LYS 71 A ASP 72 n 45 ASP 72 A ARG 73 n 46 ARG 73 A ILE 74 n 47 ILE 74 A SER 75 n 48 SER 75 A ASP 76 n 49 ASP 76 A TRP 77 n 50 TRP 77 A GLY 78 n 51 GLY 78 A GLU 79 n 52 GLU 79 A LEU 80 n 53 LEU 80 A n 54 81 A n 55 82 A n 56 83 A THR 84 n 57 THR 84 A ARG 85 n 58 ARG 85 A VAL 86 n 59 VAL 86 A PRO 87 n 60 PRO 87 A MET 88 n 61 MET 88 A GLU 89 n 62 GLU 89 A VAL 90 n 63 VAL 90 A VAL 91 n 64 VAL 91 A LEU 92 n 65 LEU 92 A LEU 93 n 66 LEU 93 A LYS 94 n 67 LYS 94 A LYS 95 n 68 LYS 95 A VAL 96 n 69 VAL 96 A SER 97 n 70 SER 97 A SER 98 n 71 SER 98 A GLY 99 n 72 GLY 99 A PHE 100 n 73 PHE 100 A SER 101 n 74 SER 101 A GLY 102 n 75 GLY 102 A VAL 103 n 76 VAL 103 A ILE 104 n 77 ILE 104 A ARG 105 n 78 ARG 105 A LEU 106 n 79 LEU 106 A LEU 107 n 80 LEU 107 A ASP 108 n 81 ASP 108 A TRP 109 n 82 TRP 109 A PHE 110 n 83 PHE 110 A GLU 111 n 84 GLU 111 A ARG 112 n 85 ARG 112 A PRO 113 n 86 PRO 113 A ASP 114 n 87 ASP 114 A SER 115 n 88 SER 115 A PHE 116 n 89 PHE 116 A VAL 117 n 90 VAL 117 A LEU 118 n 91 LEU 118 A ILE 119 n 92 ILE 119 A LEU 120 n 93 LEU 120 A GLU 121 n 94 GLU 121 A ARG 122 n 95 ARG 122 A PRO 123 n 96 PRO 123 A GLU 124 n 97 GLU 124 A PRO 125 n 98 PRO 125 A VAL 126 n 99 VAL 126 A GLN 127 n 100 GLN 127 A ASP 128 n 101 ASP 128 A LEU 129 n 102 LEU 129 A PHE 130 n 103 PHE 130 A ASP 131 n 104 ASP 131 A PHE 132 n 105 PHE 132 A ILE 133 n 106 ILE 133 A THR 134 n 107 THR 134 A GLU 135 n 108 GLU 135 A ARG 136 n 109 ARG 136 A GLY 137 n 110 GLY 137 A ALA 138 n 111 ALA 138 A LEU 139 n 112 LEU 139 A GLN 140 n 113 GLN 140 A GLU 141 n 114 GLU 141 A GLU 142 n 115 GLU 142 A LEU 143 n 116 LEU 143 A ALA 144 n 117 ALA 144 A ARG 145 n 118 ARG 145 A SER 146 n 119 SER 146 A PHE 147 n 120 PHE 147 A PHE 148 n 121 PHE 148 A TRP 149 n 122 TRP 149 A GLN 150 n 123 GLN 150 A VAL 151 n 124 VAL 151 A LEU 152 n 125 LEU 152 A GLU 153 n 126 GLU 153 A ALA 154 n 127 ALA 154 A VAL 155 n 128 VAL 155 A ARG 156 n 129 ARG 156 A HIS 157 n 130 HIS 157 A CYS 158 n 131 CYS 158 A HIS 159 n 132 HIS 159 A ASN 160 n 133 ASN 160 A CYS 161 n 134 CYS 161 A GLY 162 n 135 GLY 162 A VAL 163 n 136 VAL 163 A LEU 164 n 137 LEU 164 A HIS 165 n 138 HIS 165 A ARG 166 n 139 ARG 166 A ASP 167 n 140 ASP 167 A ILE 168 n 141 ILE 168 A LYS 169 n 142 LYS 169 A ASP 170 n 143 ASP 170 A GLU 171 n 144 GLU 171 A ASN 172 n 145 ASN 172 A ILE 173 n 146 ILE 173 A LEU 174 n 147 LEU 174 A ILE 175 n 148 ILE 175 A ASP 176 n 149 ASP 176 A LEU 177 n 150 LEU 177 A ASN 178 n 151 ASN 178 A ARG 179 n 152 ARG 179 A GLY 180 n 153 GLY 180 A GLU 181 n 154 GLU 181 A LEU 182 n 155 LEU 182 A LYS 183 n 156 LYS 183 A LEU 184 n 157 LEU 184 A ILE 185 n 158 ILE 185 A ASP 186 n 159 ASP 186 A PHE 187 n 160 PHE 187 A GLY 188 n 161 GLY 188 A SER 189 n 162 SER 189 A GLY 190 n 163 GLY 190 A ALA 191 n 164 ALA 191 A LEU 192 n 165 LEU 192 A LEU 193 n 166 LEU 193 A LYS 194 n 167 LYS 194 A ASP 195 n 168 ASP 195 A THR 196 n 169 THR 196 A VAL 197 n 170 VAL 197 A TYR 198 n 171 TYR 198 A THR 199 n 172 THR 199 A ASP 200 n 173 ASP 200 A PHE 201 n 174 PHE 201 A ASP 202 n 175 ASP 202 A GLY 203 n 176 GLY 203 A THR 204 n 177 THR 204 A ARG 205 n 178 ARG 205 A VAL 206 n 179 VAL 206 A TYR 207 n 180 TYR 207 A SER 208 n 181 SER 208 A PRO 209 n 182 PRO 209 A PRO 210 n 183 PRO 210 A GLU 211 n 184 GLU 211 A TRP 212 n 185 TRP 212 A ILE 213 n 186 ILE 213 A ARG 214 n 187 ARG 214 A TYR 215 n 188 TYR 215 A HIS 216 n 189 HIS 216 A ARG 217 n 190 ARG 217 A TYR 218 n 191 TYR 218 A HIS 219 n 192 HIS 219 A GLY 220 n 193 GLY 220 A ARG 221 n 194 ARG 221 A SER 222 n 195 SER 222 A ALA 223 n 196 ALA 223 A ALA 224 n 197 ALA 224 A VAL 225 n 198 VAL 225 A TRP 226 n 199 TRP 226 A SER 227 n 200 SER 227 A LEU 228 n 201 LEU 228 A GLY 229 n 202 GLY 229 A ILE 230 n 203 ILE 230 A LEU 231 n 204 LEU 231 A LEU 232 n 205 LEU 232 A TYR 233 n 206 TYR 233 A ASP 234 n 207 ASP 234 A MET 235 n 208 MET 235 A VAL 236 n 209 VAL 236 A CYS 237 n 210 CYS 237 A GLY 238 n 211 GLY 238 A ASP 239 n 212 ASP 239 A ILE 240 n 213 ILE 240 A PRO 241 n 214 PRO 241 A PHE 242 n 215 PHE 242 A GLU 243 n 216 GLU 243 A HIS 244 n 217 HIS 244 A ASP 245 n 218 ASP 245 A GLU 246 n 219 GLU 246 A GLU 247 n 220 GLU 247 A ILE 248 n 221 ILE 248 A ILE 249 n 222 ILE 249 A ARG 250 n 223 ARG 250 A GLY 251 n 224 GLY 251 A GLN 252 n 225 GLN 252 A VAL 253 n 226 VAL 253 A PHE 254 n 227 PHE 254 A PHE 255 n 228 PHE 255 A ARG 256 n 229 ARG 256 A GLN 257 n 230 GLN 257 A ARG 258 n 231 ARG 258 A VAL 259 n 232 VAL 259 A SER 260 n 233 SER 260 A SER 261 n 234 SER 261 A GLU 262 n 235 GLU 262 A CYS 263 n 236 CYS 263 A GLN 264 n 237 GLN 264 A HIS 265 n 238 HIS 265 A LEU 266 n 239 LEU 266 A ILE 267 n 240 ILE 267 A ARG 268 n 241 ARG 268 A TRP 269 n 242 TRP 269 A CYS 270 n 243 CYS 270 A LEU 271 n 244 LEU 271 A ALA 272 n 245 ALA 272 A LEU 273 n 246 LEU 273 A ARG 274 n 247 ARG 274 A PRO 275 n 248 PRO 275 A SER 276 n 249 SER 276 A ASP 277 n 250 ASP 277 A ARG 278 n 251 ARG 278 A PRO 279 n 252 PRO 279 A THR 280 n 253 THR 280 A PHE 281 n 254 PHE 281 A GLU 282 n 255 GLU 282 A GLU 283 n 256 GLU 283 A ILE 284 n 257 ILE 284 A GLN 285 n 258 GLN 285 A ASN 286 n 259 ASN 286 A HIS 287 n 260 HIS 287 A PRO 288 n 261 PRO 288 A TRP 289 n 262 TRP 289 A MET 290 n 263 MET 290 A GLN 291 n 264 GLN 291 A ASP 292 n 265 ASP 292 A VAL 293 n 266 VAL 293 A LEU 294 n 267 LEU 294 A LEU 295 n 268 LEU 295 A PRO 296 n 269 PRO 296 A GLN 297 n 270 GLN 297 A GLU 298 n 271 GLU 298 A THR 299 n 272 THR 299 A ALA 300 n 273 ALA 300 A GLU 301 n 274 GLU 301 A ILE 302 n 275 ILE 302 A HIS 303 n 276 HIS 303 A LEU 304 n 277 LEU 304 A HIS 305 n 278 HIS 305 A n 279 306 A n 280 307 A n 281 308 A n 282 309 A n 283 310 A n 284 311 A n 285 312 A n 286 313 A n 287 314 A n 288 315 A n 289 316 A n 290 317 A n 291 318 A n 292 319 A n 293 320 A n 294 321 A n 295 322 A n 296 323 A n 297 324 A n 298 325 A n 299 326 A 1.4192 -0.2552 -0.4011 1.1386 -0.0999 1.4480 -0.0341 -0.0229 0.0189 -0.0378 0.0492 0.0251 0.0162 -0.1345 -0.0151 0.0297 0.0111 -0.0085 0.0237 0.0047 0.0219 refined 31.0465 27.0644 0.4279 X-RAY DIFFRACTION A 35 A 305 X-RAY DIFFRACTION 1 A 1 A 1 X-RAY DIFFRACTION 1 A 2 A 27 X-RAY DIFFRACTION 1 A 327 A 375 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 41 A N GLY 14 A O SER 54 A O SER 27 A N GLY 55 A N GLY 28 A O VAL 64 A O VAL 37 A N LYS 67 A N LYS 40 A O LEU 118 A O LEU 91 A O VAL 117 A O VAL 90 A N PHE 110 A N PHE 83 A N GLY 78 A N GLY 51 A O VAL 86 A O VAL 59 A N GLN 127 A N GLN 100 A O ILE 175 A O ILE 148 A N LEU 174 A N LEU 147 A O LYS 183 A O LYS 156 A N LEU 164 A N LEU 137 A O ALA 191 A O ALA 164 1 A MET 28 A MET 1 1 Y 1 A LYS 29 A LYS 2 1 Y 1 A GLU 30 A GLU 3 1 Y 1 A LYS 31 A LYS 4 1 Y 1 A GLU 32 A GLU 5 1 Y 1 A PRO 33 A PRO 6 1 Y 1 A LEU 34 A LEU 7 1 Y 1 A SER 46 A SER 19 1 Y 1 A GLY 47 A GLY 20 1 Y 1 A GLY 48 A GLY 21 1 Y 1 A PHE 49 A PHE 22 1 Y 1 A PRO 81 A PRO 54 1 Y 1 A ASN 82 A ASN 55 1 Y 1 A GLY 83 A GLY 56 1 Y 1 A SER 306 A SER 279 1 Y 1 A LEU 307 A LEU 280 1 Y 1 A SER 308 A SER 281 1 Y 1 A PRO 309 A PRO 282 1 Y 1 A GLY 310 A GLY 283 1 Y 1 A PRO 311 A PRO 284 1 Y 1 A SER 312 A SER 285 1 Y 1 A LYS 313 A LYS 286 1 Y 1 A ALA 314 A ALA 287 1 Y 1 A ALA 315 A ALA 288 1 Y 1 A ALA 316 A ALA 289 1 Y 1 A LEU 317 A LEU 290 1 Y 1 A GLU 318 A GLU 291 1 Y 1 A HIS 319 A HIS 292 1 Y 1 A HIS 320 A HIS 293 1 Y 1 A HIS 321 A HIS 294 1 Y 1 A HIS 322 A HIS 295 1 Y 1 A HIS 323 A HIS 296 1 Y 1 A HIS 324 A HIS 297 1 Y 1 A HIS 325 A HIS 298 1 Y 1 A HIS 326 A HIS 299 1 Y 1 A A O O PRO HOH 241 359 2.14 1 A A CG CD2 HIS HIS 159 159 0.054 0.009 1.354 1.408 N 1 A A CE2 CD2 TRP TRP 212 212 0.073 0.012 1.409 1.482 N 1 A A CG CD2 HIS HIS 216 216 0.061 0.009 1.354 1.415 N 1 A A CG CD2 HIS HIS 219 219 0.054 0.009 1.354 1.408 N 1 A A CG CD2 HIS HIS 265 265 0.058 0.009 1.354 1.412 N 1 A A CE2 CD2 TRP TRP 269 269 0.073 0.012 1.409 1.482 N 1 A ASP 60 -146.16 21.15 1 A GLU 79 -175.61 -176.41 1 A SER 101 -179.96 -161.85 1 A GLU 124 -163.29 109.92 1 A ARG 166 81.06 -4.45 1 A ASP 167 -140.14 44.19 1 A ASP 186 67.98 79.40 1 A ASP 202 -142.47 33.12 42.379 0.66 0.33 0.00 0.66 0.00 -0.99 0.935 0.889 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT 0.29910 0.22899 0.29910 0.23218 2.48 84.00 757 14732 14366 5.0 97.51 16.363 0.188 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.377 0.301 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 2.48 84.00 73 2251 13 0 2165 0.017 0.019 2234 1.931 1.954 3030 6.797 5.000 261 36.299 23.103 116 16.680 15.000 375 23.257 15.000 21 0.129 0.200 325 0.009 0.021 1728 0.352 0.300 2.541 54 797 20 77.50 2.48 84 3VBW 14732 14366 0.1 0.1 1 97.51 data collection HKL-2000 phasing MOLREP refinement REFMAC 5.6.0117 data reduction HKL-2000 data scaling HKL-2000 Exploitation of hydrogen bonding constraints and flat hydrophobic energy landscapes in Pim-1 kinase needle screening and inhibitor design 1 N N 2 N N 3 N N A ASP 72 A ASP 45 HELX_P A ILE 74 A ILE 47 5 1 3 A MET 88 A MET 61 HELX_P A SER 97 A SER 70 1 2 10 A LEU 129 A LEU 102 HELX_P A GLY 137 A GLY 110 1 3 9 A GLN 140 A GLN 113 HELX_P A CYS 161 A CYS 134 1 4 22 A LYS 169 A LYS 142 HELX_P A GLU 171 A GLU 144 5 5 3 A THR 204 A THR 177 HELX_P A SER 208 A SER 181 5 6 5 A PRO 209 A PRO 182 HELX_P A HIS 216 A HIS 189 1 7 8 A HIS 219 A HIS 192 HELX_P A GLY 238 A GLY 211 1 8 20 A HIS 244 A HIS 217 HELX_P A GLY 251 A GLY 224 1 9 8 A SER 260 A SER 233 HELX_P A LEU 271 A LEU 244 1 10 12 A ARG 274 A ARG 247 HELX_P A ARG 278 A ARG 251 5 11 5 A THR 280 A THR 253 HELX_P A ASN 286 A ASN 259 1 12 7 A HIS 287 A HIS 260 HELX_P A GLN 291 A GLN 264 5 13 5 A LEU 295 A LEU 268 HELX_P A LEU 304 A LEU 277 1 14 10 TRANSFERASE/TRANSFERASE INHIBITOR Pim1, TRANSFERASE-TRANSFERASE INHIBITOR complex A PHE 100 A PHE 73 1 A SER 101 A SER 74 -11.29 A GLU 124 A GLU 97 1 A PRO 125 A PRO 98 2.76 PIM1_HUMAN UNP 1 120 P11309 KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK 120 404 3VBW 29 313 P11309 A 1 2 286 1 initiating methionine MET 28 3VBW A P11309 UNP 1 1 expression tag ALA 314 3VBW A P11309 UNP 287 1 expression tag ALA 315 3VBW A P11309 UNP 288 1 expression tag ALA 316 3VBW A P11309 UNP 289 1 expression tag LEU 317 3VBW A P11309 UNP 290 1 expression tag GLU 318 3VBW A P11309 UNP 291 1 expression tag HIS 319 3VBW A P11309 UNP 292 1 expression tag HIS 320 3VBW A P11309 UNP 293 1 expression tag HIS 321 3VBW A P11309 UNP 294 1 expression tag HIS 322 3VBW A P11309 UNP 295 1 expression tag HIS 323 3VBW A P11309 UNP 296 1 expression tag HIS 324 3VBW A P11309 UNP 297 1 expression tag HIS 325 3VBW A P11309 UNP 298 1 expression tag HIS 326 3VBW A P11309 UNP 299 5 2 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 38 A TYR 11 A GLY 45 A GLY 18 A SER 51 A SER 24 A ARG 57 A ARG 30 A PRO 63 A PRO 36 A GLU 70 A GLU 43 A SER 115 A SER 88 A GLU 121 A GLU 94 A LEU 106 A LEU 79 A GLU 111 A GLU 84 A TRP 77 A TRP 50 A GLY 78 A GLY 51 A VAL 86 A VAL 59 A PRO 87 A PRO 60 A VAL 126 A VAL 99 A ASP 128 A ASP 101 A ILE 173 A ILE 146 A ASP 176 A ASP 149 A GLU 181 A GLU 154 A LEU 184 A LEU 157 A VAL 163 A VAL 136 A LEU 164 A LEU 137 A ALA 191 A ALA 164 A LEU 192 A LEU 165 BINDING SITE FOR RESIDUE 0FN A 1 A 0FN 1 Software 11 A HOH 21 C HOH 11 1_555 A LEU 44 A LEU 17 11 1_555 A VAL 52 A VAL 25 11 1_555 A ALA 65 A ALA 38 11 1_555 A LYS 67 A LYS 40 11 1_555 A ILE 104 A ILE 77 11 1_555 A LEU 120 A LEU 93 11 1_555 A GLU 121 A GLU 94 11 1_555 A LEU 174 A LEU 147 11 1_555 A ILE 185 A ILE 158 11 1_555 A ASP 186 A ASP 159 11 1_555 170 P 65