0.018406
0.000000
0.002754
0.000000
0.026737
0.000000
0.000000
0.000000
0.015441
0.000000
0.000000
0.000000
Jacques, D.A.
Ripin, N.
Wilkinson-White, L.E.
Guss, J.M.
Matthews, J.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.000
98.510
90.000
54.331
37.401
65.484
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
R
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
S
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
O
N
96
N
P
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
C
N
101
R
C
N
102
N
O
N
103
S
C
N
104
N
O
N
105
N
C
N
106
R
C
Y
107
N
N
Y
108
N
C
Y
109
N
N
Y
110
N
C
Y
111
N
C
N
112
N
N
Y
113
N
N
Y
114
N
C
Y
115
N
N
Y
116
N
C
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
O
N
132
N
P
N
133
N
O
N
134
N
O
N
135
N
O
N
136
N
C
N
137
R
C
N
138
N
O
N
139
S
C
N
140
N
O
N
141
N
C
N
142
R
C
N
143
N
N
N
144
N
C
N
145
N
O
N
146
N
N
N
147
N
C
N
148
N
N
N
149
N
C
N
150
N
C
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
O
N
166
N
P
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
C
N
171
R
C
N
172
N
O
N
173
S
C
N
174
N
O
N
175
N
C
N
176
R
C
Y
177
N
N
Y
178
N
C
Y
179
N
N
Y
180
N
C
N
181
N
C
N
182
N
O
N
183
N
N
N
184
N
C
N
185
N
N
N
186
N
N
Y
187
N
C
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
O
N
203
N
P
N
204
N
O
N
205
N
O
N
206
N
O
N
207
N
C
N
208
R
C
N
209
N
O
N
210
S
C
N
211
N
O
N
212
N
C
N
213
R
C
N
214
N
N
N
215
N
C
N
216
N
O
N
217
N
N
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
O
N
266
N
O
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
Y
292
N
C
Y
293
N
N
Y
294
N
C
Y
295
N
C
Y
296
N
N
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
S
C
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
C
N
363
N
N
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
C
N
386
N
S
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
N
445
N
O
N
446
N
O
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
R
C
N
459
N
O
N
460
N
C
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
N
Y
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
N
485
N
O
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
N
N
499
S
C
N
500
N
C
N
501
N
O
N
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
C
N
509
N
O
N
510
N
O
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
N
N
523
S
C
N
524
N
C
N
525
N
O
N
526
N
C
N
527
N
C
N
528
N
C
N
529
N
O
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
ZN
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
Y
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
doub
N
121
N
sing
N
122
N
sing
Y
123
N
sing
Y
124
N
doub
N
125
N
sing
Y
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
Y
185
N
sing
Y
186
N
sing
Y
187
N
doub
N
188
N
sing
Y
189
N
sing
N
190
N
sing
Y
191
N
doub
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
Y
295
N
sing
Y
296
N
doub
Y
297
N
doub
N
298
N
sing
Y
299
N
sing
N
300
N
sing
Y
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
doub
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
Y
472
N
doub
Y
473
N
sing
Y
474
N
sing
N
475
N
sing
Y
476
N
doub
Y
477
N
sing
Y
478
N
sing
N
479
N
sing
Y
480
N
sing
Y
481
N
doub
N
482
N
sing
Y
483
N
doub
N
484
N
sing
Y
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
doub
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
Y
500
N
doub
Y
501
N
sing
Y
502
N
sing
N
503
N
sing
Y
504
N
doub
N
505
N
sing
Y
506
N
doub
N
507
N
sing
Y
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
doub
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
US
Protein Sci.
PRCIEI
0795
1469-896X
24
1649
1659
10.1002/pro.2760
26234528
GATA1 directly mediates interactions with closely spaced pseudopalindromic but not distantly spaced double GATA sites on DNA.
2015
10.2210/pdb3vd6/pdb
pdb_00003vd6
100
1
IMAGE PLATE
2011-09-12
MAR scanner 345 mm plate
CONFOCAL MAXFLUX MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007 HF
6114.963
DNA (5'-D(*TP*TP*GP*TP*CP*TP*TP*AP*TP*CP*AP*GP*AP*TP*GP*GP*AP*CP*TP*C)-3')
1
syn
polymer
6151.020
DNA (5'-D(*AP*AP*GP*AP*GP*TP*CP*CP*AP*TP*CP*TP*GP*AP*TP*AP*AP*GP*AP*C)-3')
1
syn
polymer
13507.752
Erythroid transcription factor
N and C Fingers, residues 200-318
1
man
polymer
59.044
ACETATE ION
1
syn
non-polymer
65.409
ZINC ION
3
syn
non-polymer
18.015
water
93
nat
water
Eryf1, GATA-binding factor 1, GATA-1, GF-1, NF-E1 DNA-binding protein
no
no
(DT)(DT)(DG)(DT)(DC)(DT)(DT)(DA)(DT)(DC)(DA)(DG)(DA)(DT)(DG)(DG)(DA)(DC)(DT)(DC)
TTGTCTTATCAGATGGACTC
A
polydeoxyribonucleotide
no
no
(DA)(DA)(DG)(DA)(DG)(DT)(DC)(DC)(DA)(DT)(DC)(DT)(DG)(DA)(DT)(DA)(DA)(DG)(DA)(DC)
AAGAGTCCATCTGATAAGAC
B
polydeoxyribonucleotide
no
no
EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRMIVSKRAGTQCTNCQTTTTTLWRRNASGDPVC
NACGLYFKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRG
EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRMIVSKRAGTQCTNCQTTTTTLWRRNASGDPVC
NACGLYFKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRG
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Gata1
10090
Mus musculus
562
Escherichia coli
Rosetta 2
plasmid
pET-11a
1
2.55
51.82
1.890
VAPOR DIFFUSION, HANGING DROP
5.5
0.2M ammonium acetate, 0.1M BISTRIS, 25% PEG 3350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
-15.856
1
19
A
3
B
40
-7.112
A_DG3:DC40_B
1
-10.385
-0.071
-0.389
-0.022
0.338
1
20
A
4
B
39
5.906
A_DT4:DA39_B
2
-22.290
-0.078
0.242
0.025
-9.934
1
19
A
5
B
38
-0.336
A_DC5:DG38_B
3
-7.035
0.175
0.297
-0.100
-8.976
1
20
A
6
B
37
3.856
A_DT6:DA37_B
4
-13.289
-0.176
0.426
-0.105
0.935
1
20
A
7
B
36
6.549
A_DT7:DA36_B
5
4.501
0.010
-0.246
-0.206
4.622
1
20
A
8
B
35
1.684
A_DA8:DT35_B
6
-11.131
-0.001
0.081
-0.174
15.391
1
20
A
9
B
34
6.508
A_DT9:DA34_B
7
-9.683
-0.017
0.064
-0.008
2.062
1
19
A
10
B
33
1.380
A_DC10:DG33_B
8
-22.569
0.343
0.040
-0.156
-5.504
1
20
A
11
B
32
2.008
A_DA11:DT32_B
9
-3.148
-0.058
0.175
-0.169
-1.903
1
19
A
12
B
31
1.909
A_DG12:DC31_B
10
-21.281
-0.370
0.195
-0.228
-19.356
1
20
A
13
B
30
1.542
A_DA13:DT30_B
11
-8.409
0.121
0.085
-0.017
-12.290
1
20
A
14
B
29
-2.319
A_DT14:DA29_B
12
-11.149
-0.013
0.527
-0.011
-1.224
1
19
A
15
B
28
-0.664
A_DG15:DC28_B
13
3.376
-0.091
-0.017
-0.070
7.393
1
19
A
16
B
27
-0.523
A_DG16:DC27_B
14
-9.440
-0.452
0.116
-0.182
10.805
1
20
A
17
B
26
1.000
A_DA17:DT26_B
15
-14.607
0.188
0.259
-0.159
3.352
1
19
A
18
B
25
4.603
A_DC18:DG25_B
16
-16.766
0.312
0.063
-0.042
-6.010
1
20
A
19
B
24
1.031
A_DT19:DA24_B
17
-15.635
-0.253
0.242
0.103
0.675
1
19
A
20
B
23
4.018
A_DC20:DG23_B
18
-12.986
0.164
0.427
-0.067
2.894
31.308
A
A
3
4
5.076
B
B
40
39
2.897
2.727
-0.241
0.020
AA_DG3DT4:DA39DC40_BB
1
-4.418
8.224
30.885
-0.422
-0.297
3.596
42.623
A
A
4
5
-2.707
B
B
39
38
3.642
-1.967
0.446
0.870
AA_DT4DC5:DG38DA39_BB
2
-0.373
0.514
42.578
1.416
-0.655
3.394
30.546
A
A
5
6
-4.355
B
B
38
37
3.401
-2.290
-0.662
0.514
AA_DC5DT6:DA37DG38_BB
3
-2.331
4.432
30.375
1.448
0.775
3.328
39.046
A
A
6
7
-3.591
B
B
37
36
3.219
-2.393
1.607
0.912
AA_DT6DT7:DA36DA37_BB
4
4.823
-7.238
38.688
1.655
-1.819
3.411
38.879
A
A
7
8
-5.049
B
B
36
35
3.331
-3.352
-1.627
0.652
AA_DT7DA8:DT35DA36_BB
5
-4.037
6.082
38.537
1.401
1.936
3.016
29.103
A
A
8
9
-5.555
B
B
35
34
2.993
-2.788
0.640
-0.404
AA_DA8DT9:DA34DT35_BB
6
-0.109
0.218
28.972
-0.243
-1.295
3.453
42.617
A
A
9
10
-7.389
B
B
34
33
3.462
-5.357
0.281
-0.112
AA_DT9DC10:DG33DA34_BB
7
0.500
-0.690
42.292
0.418
-0.333
3.096
35.088
A
A
10
11
11.504
B
B
33
32
3.341
6.892
0.015
-0.962
AA_DC10DA11:DT32DG33_BB
8
1.206
-2.013
34.405
-2.621
0.154
3.195
35.970
A
A
11
12
3.107
B
B
32
31
3.238
1.918
-0.010
-0.753
AA_DA11DG12:DC31DT32_BB
9
-0.789
1.278
35.912
-1.488
-0.095
3.570
43.598
A
A
12
13
-2.074
B
B
31
30
3.560
-1.540
-0.359
-0.218
AA_DG12DA13:DT30DC31_BB
10
-0.617
0.831
43.568
-0.133
0.418
3.245
28.711
A
A
13
14
-4.221
B
B
30
29
3.130
-2.085
-0.770
-0.701
AA_DA13DT14:DA29DT30_BB
11
-3.842
7.778
28.383
-0.953
0.706
3.167
36.419
A
A
14
15
-3.073
B
B
29
28
3.095
-1.915
1.076
0.717
AA_DT14DG15:DC28DA29_BB
12
4.813
-7.725
36.061
1.404
-1.078
3.427
33.194
A
A
15
16
7.220
B
B
28
27
3.204
4.100
-1.326
0.750
AA_DG15DG16:DC27DC28_BB
13
-4.858
8.554
32.596
0.610
1.488
3.200
36.184
A
A
16
17
3.310
B
B
27
26
3.207
2.055
-0.225
-0.110
AA_DG16DA17:DT26DC27_BB
14
-0.818
1.318
36.119
-0.461
0.250
3.437
34.548
A
A
17
18
1.459
B
B
26
25
3.420
0.866
0.816
-0.758
AA_DA17DC18:DG25DT26_BB
15
1.812
-3.052
34.491
-1.416
-1.081
3.320
33.099
A
A
18
19
8.250
B
B
25
24
3.448
4.681
-0.074
-0.587
AA_DC18DT19:DA24DG25_BB
16
2.435
-4.292
32.687
-1.853
0.558
3.107
37.911
A
A
19
20
-2.342
B
B
24
23
3.117
-1.521
0.461
-0.206
AA_DT19DC20:DG23DA24_BB
17
-1.196
1.841
37.864
-0.131
-0.855
citation
citation_author
database_2
pdbx_entity_src_syn
pdbx_struct_conn_angle
struct_conn
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Database references
Derived calculations
Source and taxonomy
Data collection
Refinement description
1
0
2013-01-16
1
1
2023-05-24
1
2
2023-11-08
_citation.country
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.organism_scientific
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2012-01-04
REL
REL
ACT
ACETATE ION
ZN
ZINC ION
HOH
water
This sequence occurs naturally in humans
32630
synthetic construct
sample
This sequence occurs naturally in humans
32630
synthetic construct
sample
3DFX
PDB ENTRY 3DFX
PDB
experimental model
ACT
1
4
ACT
ACT
101
A
ZN
500
5
ZN
ZN
500
C
ZN
501
5
ZN
ZN
501
C
ZN
502
5
ZN
ZN
502
C
HOH
5
6
HOH
HOH
201
A
HOH
9
6
HOH
HOH
202
A
HOH
11
6
HOH
HOH
203
A
HOH
17
6
HOH
HOH
204
A
HOH
18
6
HOH
HOH
205
A
HOH
19
6
HOH
HOH
206
A
HOH
21
6
HOH
HOH
207
A
HOH
29
6
HOH
HOH
208
A
HOH
32
6
HOH
HOH
209
A
HOH
35
6
HOH
HOH
210
A
HOH
39
6
HOH
HOH
211
A
HOH
40
6
HOH
HOH
212
A
HOH
45
6
HOH
HOH
213
A
HOH
48
6
HOH
HOH
214
A
HOH
49
6
HOH
HOH
215
A
HOH
59
6
HOH
HOH
216
A
HOH
75
6
HOH
HOH
217
A
HOH
76
6
HOH
HOH
218
A
HOH
80
6
HOH
HOH
219
A
HOH
89
6
HOH
HOH
220
A
HOH
90
6
HOH
HOH
221
A
HOH
92
6
HOH
HOH
222
A
HOH
3
6
HOH
HOH
101
B
HOH
4
6
HOH
HOH
102
B
HOH
6
6
HOH
HOH
103
B
HOH
27
6
HOH
HOH
104
B
HOH
37
6
HOH
HOH
105
B
HOH
38
6
HOH
HOH
106
B
HOH
47
6
HOH
HOH
107
B
HOH
54
6
HOH
HOH
108
B
HOH
55
6
HOH
HOH
109
B
HOH
60
6
HOH
HOH
110
B
HOH
63
6
HOH
HOH
111
B
HOH
64
6
HOH
HOH
112
B
HOH
69
6
HOH
HOH
113
B
HOH
70
6
HOH
HOH
114
B
HOH
78
6
HOH
HOH
115
B
HOH
84
6
HOH
HOH
116
B
HOH
86
6
HOH
HOH
117
B
HOH
87
6
HOH
HOH
118
B
HOH
88
6
HOH
HOH
119
B
HOH
24
6
HOH
HOH
601
C
HOH
28
6
HOH
HOH
602
C
HOH
1
6
HOH
HOH
603
C
HOH
2
6
HOH
HOH
604
C
HOH
7
6
HOH
HOH
605
C
HOH
8
6
HOH
HOH
606
C
HOH
10
6
HOH
HOH
607
C
HOH
12
6
HOH
HOH
608
C
HOH
13
6
HOH
HOH
609
C
HOH
14
6
HOH
HOH
610
C
HOH
15
6
HOH
HOH
611
C
HOH
16
6
HOH
HOH
612
C
HOH
20
6
HOH
HOH
613
C
HOH
22
6
HOH
HOH
614
C
HOH
23
6
HOH
HOH
615
C
HOH
25
6
HOH
HOH
616
C
HOH
26
6
HOH
HOH
617
C
HOH
30
6
HOH
HOH
618
C
HOH
31
6
HOH
HOH
619
C
HOH
33
6
HOH
HOH
620
C
HOH
34
6
HOH
HOH
621
C
HOH
36
6
HOH
HOH
622
C
HOH
41
6
HOH
HOH
623
C
HOH
42
6
HOH
HOH
624
C
HOH
43
6
HOH
HOH
625
C
HOH
44
6
HOH
HOH
626
C
HOH
46
6
HOH
HOH
627
C
HOH
50
6
HOH
HOH
628
C
HOH
51
6
HOH
HOH
629
C
HOH
52
6
HOH
HOH
630
C
HOH
53
6
HOH
HOH
631
C
HOH
56
6
HOH
HOH
632
C
HOH
57
6
HOH
HOH
633
C
HOH
58
6
HOH
HOH
634
C
HOH
61
6
HOH
HOH
635
C
HOH
62
6
HOH
HOH
636
C
HOH
65
6
HOH
HOH
637
C
HOH
66
6
HOH
HOH
638
C
HOH
67
6
HOH
HOH
639
C
HOH
68
6
HOH
HOH
640
C
HOH
71
6
HOH
HOH
641
C
HOH
72
6
HOH
HOH
642
C
HOH
73
6
HOH
HOH
643
C
HOH
74
6
HOH
HOH
644
C
HOH
77
6
HOH
HOH
645
C
HOH
79
6
HOH
HOH
646
C
HOH
81
6
HOH
HOH
647
C
HOH
82
6
HOH
HOH
648
C
HOH
83
6
HOH
HOH
649
C
HOH
85
6
HOH
HOH
650
C
HOH
91
6
HOH
HOH
651
C
HOH
93
6
HOH
HOH
652
C
51.130
3.500
3.500
38.450
38.450
Phaser MODE: MR_AUTO
DT
1
n
1
DT
1
A
DT
2
n
2
DT
2
A
DG
3
n
3
DG
3
A
DT
4
n
4
DT
4
A
DC
5
n
5
DC
5
A
DT
6
n
6
DT
6
A
DT
7
n
7
DT
7
A
DA
8
n
8
DA
8
A
DT
9
n
9
DT
9
A
DC
10
n
10
DC
10
A
DA
11
n
11
DA
11
A
DG
12
n
12
DG
12
A
DA
13
n
13
DA
13
A
DT
14
n
14
DT
14
A
DG
15
n
15
DG
15
A
DG
16
n
16
DG
16
A
DA
17
n
17
DA
17
A
DC
18
n
18
DC
18
A
DT
19
n
19
DT
19
A
DC
20
n
20
DC
20
A
DA
21
n
1
DA
21
B
DA
22
n
2
DA
22
B
DG
23
n
3
DG
23
B
DA
24
n
4
DA
24
B
DG
25
n
5
DG
25
B
DT
26
n
6
DT
26
B
DC
27
n
7
DC
27
B
DC
28
n
8
DC
28
B
DA
29
n
9
DA
29
B
DT
30
n
10
DT
30
B
DC
31
n
11
DC
31
B
DT
32
n
12
DT
32
B
DG
33
n
13
DG
33
B
DA
34
n
14
DA
34
B
DT
35
n
15
DT
35
B
DA
36
n
16
DA
36
B
DA
37
n
17
DA
37
B
DG
38
n
18
DG
38
B
DA
39
n
19
DA
39
B
DC
40
n
20
DC
40
B
n
1
200
C
ALA
201
n
2
ALA
201
C
ARG
202
n
3
ARG
202
C
GLU
203
n
4
GLU
203
C
CYS
204
n
5
CYS
204
C
VAL
205
n
6
VAL
205
C
ASN
206
n
7
ASN
206
C
CYS
207
n
8
CYS
207
C
GLY
208
n
9
GLY
208
C
ALA
209
n
10
ALA
209
C
THR
210
n
11
THR
210
C
ALA
211
n
12
ALA
211
C
THR
212
n
13
THR
212
C
PRO
213
n
14
PRO
213
C
LEU
214
n
15
LEU
214
C
TRP
215
n
16
TRP
215
C
ARG
216
n
17
ARG
216
C
ARG
217
n
18
ARG
217
C
ASP
218
n
19
ASP
218
C
ARG
219
n
20
ARG
219
C
THR
220
n
21
THR
220
C
GLY
221
n
22
GLY
221
C
HIS
222
n
23
HIS
222
C
TYR
223
n
24
TYR
223
C
LEU
224
n
25
LEU
224
C
CYS
225
n
26
CYS
225
C
ASN
226
n
27
ASN
226
C
ALA
227
n
28
ALA
227
C
CYS
228
n
29
CYS
228
C
GLY
229
n
30
GLY
229
C
LEU
230
n
31
LEU
230
C
TYR
231
n
32
TYR
231
C
HIS
232
n
33
HIS
232
C
LYS
233
n
34
LYS
233
C
MET
234
n
35
MET
234
C
ASN
235
n
36
ASN
235
C
GLY
236
n
37
GLY
236
C
GLN
237
n
38
GLN
237
C
ASN
238
n
39
ASN
238
C
ARG
239
n
40
ARG
239
C
PRO
240
n
41
PRO
240
C
LEU
241
n
42
LEU
241
C
n
43
242
C
n
44
243
C
n
45
244
C
n
46
245
C
n
47
246
C
n
48
247
C
n
49
248
C
n
50
249
C
n
51
250
C
n
52
251
C
n
53
252
C
n
54
253
C
n
55
254
C
n
56
255
C
THR
256
n
57
THR
256
C
GLN
257
n
58
GLN
257
C
CYS
258
n
59
CYS
258
C
THR
259
n
60
THR
259
C
ASN
260
n
61
ASN
260
C
CYS
261
n
62
CYS
261
C
GLN
262
n
63
GLN
262
C
THR
263
n
64
THR
263
C
THR
264
n
65
THR
264
C
THR
265
n
66
THR
265
C
THR
266
n
67
THR
266
C
THR
267
n
68
THR
267
C
LEU
268
n
69
LEU
268
C
TRP
269
n
70
TRP
269
C
ARG
270
n
71
ARG
270
C
ARG
271
n
72
ARG
271
C
ASN
272
n
73
ASN
272
C
ALA
273
n
74
ALA
273
C
SER
274
n
75
SER
274
C
GLY
275
n
76
GLY
275
C
ASP
276
n
77
ASP
276
C
PRO
277
n
78
PRO
277
C
VAL
278
n
79
VAL
278
C
CYS
279
n
80
CYS
279
C
ASN
280
n
81
ASN
280
C
ALA
281
n
82
ALA
281
C
CYS
282
n
83
CYS
282
C
GLY
283
n
84
GLY
283
C
LEU
284
n
85
LEU
284
C
TYR
285
n
86
TYR
285
C
PHE
286
n
87
PHE
286
C
LYS
287
n
88
LYS
287
C
LEU
288
n
89
LEU
288
C
HIS
289
n
90
HIS
289
C
GLN
290
n
91
GLN
290
C
VAL
291
n
92
VAL
291
C
ASN
292
n
93
ASN
292
C
ARG
293
n
94
ARG
293
C
PRO
294
n
95
PRO
294
C
LEU
295
n
96
LEU
295
C
THR
296
n
97
THR
296
C
MET
297
n
98
MET
297
C
ARG
298
n
99
ARG
298
C
LYS
299
n
100
LYS
299
C
ASP
300
n
101
ASP
300
C
GLY
301
n
102
GLY
301
C
ILE
302
n
103
ILE
302
C
GLN
303
n
104
GLN
303
C
THR
304
n
105
THR
304
C
ARG
305
n
106
ARG
305
C
ASN
306
n
107
ASN
306
C
ARG
307
n
108
ARG
307
C
LYS
308
n
109
LYS
308
C
ALA
309
n
110
ALA
309
C
SER
310
n
111
SER
310
C
n
112
311
C
n
113
312
C
n
114
313
C
n
115
314
C
n
116
315
C
n
117
316
C
n
118
317
C
n
119
318
C
4.9846
-1.1379
0.9964
2.9715
-0.1438
3.0370
0.0406
0.0754
-0.2549
-0.1552
-0.0862
0.1278
0.1146
0.1688
0.0455
0.1266
0.0227
0.0457
0.1049
-0.0228
0.0463
refined
16.7333
-0.0143
16.3636
X-RAY DIFFRACTION
3.2619
-1.2697
0.9020
5.0310
-0.8592
4.9215
-0.0459
-0.2644
-0.0059
0.3362
-0.0151
-0.2997
-0.1926
0.3926
0.0610
0.1546
-0.0237
-0.0148
0.1724
-0.0220
0.0403
refined
23.1923
4.5291
27.5810
X-RAY DIFFRACTION
4.7485
-0.8101
1.5839
4.0336
1.4645
6.9810
-0.1629
0.6763
0.4810
-0.6442
-0.1471
0.1271
-0.4617
0.3481
0.3100
0.2220
0.0176
-0.0653
0.1210
0.0445
0.1186
refined
10.6540
8.5691
6.1156
X-RAY DIFFRACTION
A
1
A
20
X-RAY DIFFRACTION
1
B
21
B
40
X-RAY DIFFRACTION
1
C
201
C
241
X-RAY DIFFRACTION
2
C
500
C
500
X-RAY DIFFRACTION
2
C
502
C
502
X-RAY DIFFRACTION
2
C
256
C
309
X-RAY DIFFRACTION
3
C
501
C
501
X-RAY DIFFRACTION
3
author_and_software_defined_assembly
PISA
3
trimeric
5640
-35
11660
C
CYS
204
C
SG
CYS
5
1_555
C
ZN
500
E
ZN
ZN
1_555
C
CYS
207
C
SG
CYS
8
1_555
109.0
C
CYS
204
C
SG
CYS
5
1_555
C
ZN
500
E
ZN
ZN
1_555
C
CYS
225
C
SG
CYS
26
1_555
117.8
C
CYS
207
C
SG
CYS
8
1_555
C
ZN
500
E
ZN
ZN
1_555
C
CYS
225
C
SG
CYS
26
1_555
111.7
C
CYS
204
C
SG
CYS
5
1_555
C
ZN
500
E
ZN
ZN
1_555
C
CYS
228
C
SG
CYS
29
1_555
107.6
C
CYS
207
C
SG
CYS
8
1_555
C
ZN
500
E
ZN
ZN
1_555
C
CYS
228
C
SG
CYS
29
1_555
109.6
C
CYS
225
C
SG
CYS
26
1_555
C
ZN
500
E
ZN
ZN
1_555
C
CYS
228
C
SG
CYS
29
1_555
100.4
C
ASP
218
C
OD2
ASP
19
1_555
C
ZN
502
G
ZN
ZN
1_555
C
HIS
222
C
ND1
HIS
23
1_555
119.9
C
CYS
258
C
SG
CYS
59
1_555
C
ZN
501
F
ZN
ZN
1_555
C
CYS
261
C
SG
CYS
62
1_555
107.9
C
CYS
258
C
SG
CYS
59
1_555
C
ZN
501
F
ZN
ZN
1_555
C
CYS
279
C
SG
CYS
80
1_555
114.3
C
CYS
261
C
SG
CYS
62
1_555
C
ZN
501
F
ZN
ZN
1_555
C
CYS
279
C
SG
CYS
80
1_555
115.9
C
CYS
258
C
SG
CYS
59
1_555
C
ZN
501
F
ZN
ZN
1_555
C
CYS
282
C
SG
CYS
83
1_555
104.7
C
CYS
261
C
SG
CYS
62
1_555
C
ZN
501
F
ZN
ZN
1_555
C
CYS
282
C
SG
CYS
83
1_555
109.9
C
CYS
279
C
SG
CYS
80
1_555
C
ZN
501
F
ZN
ZN
1_555
C
CYS
282
C
SG
CYS
83
1_555
103.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
C
N
ARG
216
C
N
ARG
17
C
O
LEU
224
C
O
LEU
25
C
N
ARG
270
C
N
ARG
71
C
O
VAL
278
C
O
VAL
79
1
C
GLU
200
C
GLU
1
1
Y
1
C
ILE
242
C
ILE
43
1
Y
1
C
ARG
243
C
ARG
44
1
Y
1
C
PRO
244
C
PRO
45
1
Y
1
C
LYS
245
C
LYS
46
1
Y
1
C
LYS
246
C
LYS
47
1
Y
1
C
ARG
247
C
ARG
48
1
Y
1
C
MET
248
C
MET
49
1
Y
1
C
ILE
249
C
ILE
50
1
Y
1
C
VAL
250
C
VAL
51
1
Y
1
C
SER
251
C
SER
52
1
Y
1
C
LYS
252
C
LYS
53
1
Y
1
C
ARG
253
C
ARG
54
1
Y
1
C
ALA
254
C
ALA
55
1
Y
1
C
GLY
255
C
GLY
56
1
Y
1
C
GLY
311
C
GLY
112
1
Y
1
C
LYS
312
C
LYS
113
1
Y
1
C
GLY
313
C
GLY
114
1
Y
1
C
LYS
314
C
LYS
115
1
Y
1
C
LYS
315
C
LYS
116
1
Y
1
C
LYS
316
C
LYS
117
1
Y
1
C
ARG
317
C
ARG
118
1
Y
1
C
GLY
318
C
GLY
119
1
Y
1
3.13
0.30
108.30
111.43
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
1
1.87
0.30
108.30
110.17
A
A
A
O4'
C1'
N1
DC
DC
DC
10
10
10
N
1
3.53
0.30
108.30
111.83
A
A
A
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
2.62
0.30
108.30
110.92
B
B
B
O4'
C1'
N1
DC
DC
DC
28
28
28
N
1
2.15
0.30
108.30
110.45
B
B
B
O4'
C1'
N1
DT
DT
DT
30
30
30
N
1
3.59
0.30
108.30
111.89
B
B
B
O4'
C1'
N9
DG
DG
DG
38
38
38
N
1
1.91
0.30
108.30
110.21
B
B
B
O4'
C1'
N1
DC
DC
DC
40
40
40
N
72.560
55.616
15.850
-2.9100
0.0000
-3.2200
0.2700
0.0000
1.6900
0.9630
0.9540
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: RESIDUAL ONLY
0.2468
0.2182
0.2196
1.9800
14.9000
887
18203
18203
4.9000
98.8300
0.2715
0.2401
1.000
0.500
0.7744
11.0890
0.1360
0.1751
0.1551
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1750
0.1550
0.8000
0.8000
1.4000
PDB ENTRY 3DFX
MAXIMUM LIKELIHOOD
MASK
1.9800
14.9000
93
1670
7
814
756
0.005
0.021
1690
0.001
0.020
907
1.080
2.540
2455
0.935
3.000
2229
3.986
5.000
96
31.671
22.051
39
10.097
15.000
132
9.388
15.000
11
0.044
0.200
272
0.003
0.020
1293
0.001
0.020
248
0.917
2.000
481
0.179
2.000
195
1.655
3.000
770
2.029
4.000
1209
2.844
6.000
1684
0.4000
0.3760
2.0300
58
1200
1258
20
95.7400
53.2
1.980
15.000
3VD6
18281
18281
0
0
0.049
1.048
1
19.100
3.500
99.500
0.580
1.980
2.010
893
1.094
1
3.400
99.900
0.509
2.010
2.050
910
1.084
1
3.400
99.500
0.477
2.050
2.090
904
1.071
1
3.400
98.500
0.410
2.090
2.130
888
1.074
1
3.400
100.000
0.355
2.130
2.180
929
1.063
1
3.300
99.800
0.305
2.180
2.230
880
1.090
1
3.400
99.400
0.267
2.230
2.280
920
1.044
1
3.400
99.900
0.246
2.280
2.350
923
1.072
1
3.400
99.800
0.174
2.350
2.420
886
1.079
1
3.400
99.800
0.176
2.420
2.490
934
1.073
1
3.400
100.000
0.144
2.490
2.580
895
1.082
1
3.500
100.000
0.119
2.580
2.680
938
0.972
1
3.500
100.000
0.092
2.680
2.810
917
1.099
1
3.600
99.900
0.079
2.810
2.950
904
1.072
1
3.600
100.000
0.062
2.950
3.140
931
0.981
1
3.600
99.700
0.047
3.140
3.380
872
1.082
1
3.600
95.200
0.040
3.380
3.710
928
0.967
1
3.700
99.800
0.037
3.710
4.240
918
1.059
1
3.700
99.100
0.037
4.240
5.300
936
1.029
1
3.600
99.500
0.035
5.300
15.000
975
0.920
1
3.600
99.900
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Wed Jun 24 14:00:05 2009
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.1.4
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
MAR345dtb
data reduction
HKL-2000
data scaling
HKL-2000
Both Zn Fingers of GATA1 Bound to Palindromic DNA Recognition Site, P21 Crystal Form
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
C
CYS
225
C
CYS
26
HELX_P
C
GLY
236
C
GLY
37
1
1
12
C
CYS
279
C
CYS
80
HELX_P
C
GLN
290
C
GLN
91
1
2
12
C
PRO
294
C
PRO
95
HELX_P
C
ARG
298
C
ARG
99
5
3
5
metalc
2.227
C
CYS
204
C
SG
CYS
5
1_555
C
ZN
500
E
ZN
ZN
1_555
metalc
2.301
C
CYS
207
C
SG
CYS
8
1_555
C
ZN
500
E
ZN
ZN
1_555
metalc
1.791
C
ASP
218
C
OD2
ASP
19
1_555
C
ZN
502
G
ZN
ZN
1_555
metalc
2.286
C
HIS
222
C
ND1
HIS
23
1_555
C
ZN
502
G
ZN
ZN
1_555
metalc
2.271
C
CYS
225
C
SG
CYS
26
1_555
C
ZN
500
E
ZN
ZN
1_555
metalc
2.334
C
CYS
228
C
SG
CYS
29
1_555
C
ZN
500
E
ZN
ZN
1_555
metalc
2.396
C
CYS
258
C
SG
CYS
59
1_555
C
ZN
501
F
ZN
ZN
1_555
metalc
2.185
C
CYS
261
C
SG
CYS
62
1_555
C
ZN
501
F
ZN
ZN
1_555
metalc
2.274
C
CYS
279
C
SG
CYS
80
1_555
C
ZN
501
F
ZN
ZN
1_555
metalc
2.243
C
CYS
282
C
SG
CYS
83
1_555
C
ZN
501
F
ZN
ZN
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
40
B
N3
DC
20
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
40
B
O2
DC
20
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
40
B
N4
DC
20
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
39
B
N1
DA
19
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
39
B
N6
DA
19
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
38
B
N1
DG
18
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
38
B
O6
DG
18
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
38
B
N2
DG
18
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
B
DA
37
B
N1
DA
17
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
B
DA
37
B
N6
DA
17
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
36
B
N1
DA
16
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
36
B
N6
DA
16
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N1
DA
8
1_555
B
DT
35
B
N3
DT
15
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N6
DA
8
1_555
B
DT
35
B
O4
DT
15
1_555
hydrog
WATSON-CRICK
A
DT
9
A
N3
DT
9
1_555
B
DA
34
B
N1
DA
14
1_555
hydrog
WATSON-CRICK
A
DT
9
A
O4
DT
9
1_555
B
DA
34
B
N6
DA
14
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N3
DC
10
1_555
B
DG
33
B
N1
DG
13
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N4
DC
10
1_555
B
DG
33
B
O6
DG
13
1_555
hydrog
WATSON-CRICK
A
DC
10
A
O2
DC
10
1_555
B
DG
33
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
A
DA
11
A
N1
DA
11
1_555
B
DT
32
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
A
DA
11
A
N6
DA
11
1_555
B
DT
32
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
31
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
31
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
31
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DA
13
A
N1
DA
13
1_555
B
DT
30
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
A
DA
13
A
N6
DA
13
1_555
B
DT
30
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
A
DT
14
A
N3
DT
14
1_555
B
DA
29
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
A
DT
14
A
O4
DT
14
1_555
B
DA
29
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
A
DG
15
A
N1
DG
15
1_555
B
DC
28
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
15
A
N2
DG
15
1_555
B
DC
28
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
15
A
O6
DG
15
1_555
B
DC
28
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
16
A
N1
DG
16
1_555
B
DC
27
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
16
A
N2
DG
16
1_555
B
DC
27
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
16
A
O6
DG
16
1_555
B
DC
27
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DA
17
A
N1
DA
17
1_555
B
DT
26
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
17
A
N6
DA
17
1_555
B
DT
26
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DC
18
A
N3
DC
18
1_555
B
DG
25
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
18
A
N4
DC
18
1_555
B
DG
25
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
18
A
O2
DC
18
1_555
B
DG
25
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DT
19
A
N3
DT
19
1_555
B
DA
24
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
19
A
O4
DT
19
1_555
B
DA
24
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DC
20
A
N3
DC
20
1_555
B
DG
23
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
20
A
N4
DC
20
1_555
B
DG
23
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
20
A
O2
DC
20
1_555
B
DG
23
B
N2
DG
3
1_555
TRANSCRIPTION/DNA
PROTEIN-DNA COMPLEX, ZINC FINGER, TRANSCRIPTION FACTOR, DNA BINDING, NUCLEUS, TRANSCRIPTION-DNA complex
3VD6
PDB
1
1
3VD6
TTGTCTTATCAGATGGACTC
3VD6
PDB
2
21
3VD6
AAGAGTCCATCTGATAAGAC
GATA1_MOUSE
UNP
3
200
P17679
EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRMIVSKRAGTQCTNCQTTTTTLWRRNASGDPVC
NACGLYFKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRG
1
20
3VD6
1
20
3VD6
A
1
1
20
21
40
3VD6
21
40
3VD6
B
2
1
20
200
318
3VD6
200
318
P17679
C
3
1
119
2
2
anti-parallel
anti-parallel
C
ARG
216
C
ARG
17
C
ARG
217
C
ARG
18
C
TYR
223
C
TYR
24
C
LEU
224
C
LEU
25
C
ARG
270
C
ARG
71
C
ARG
271
C
ARG
72
C
PRO
277
C
PRO
78
C
VAL
278
C
VAL
79
BINDING SITE FOR RESIDUE ACT A 101
A
ACT
101
Software
3
BINDING SITE FOR RESIDUE ZN C 500
C
ZN
500
Software
4
BINDING SITE FOR RESIDUE ZN C 501
C
ZN
501
Software
4
BINDING SITE FOR RESIDUE ZN C 502
C
ZN
502
Software
2
A
DT
9
A
DT
9
3
1_555
A
DC
10
A
DC
10
3
1_555
C
ARG
202
C
ARG
3
3
1_555
C
CYS
204
C
CYS
5
4
1_555
C
CYS
207
C
CYS
8
4
1_555
C
CYS
225
C
CYS
26
4
1_555
C
CYS
228
C
CYS
29
4
1_555
C
CYS
258
C
CYS
59
4
1_555
C
CYS
261
C
CYS
62
4
1_555
C
CYS
279
C
CYS
80
4
1_555
C
CYS
282
C
CYS
83
4
1_555
C
ASP
218
C
ASP
19
2
1_555
C
HIS
222
C
HIS
23
2
1_555
4
P 1 21 1