0.028413
-0.008349
-0.005970
0.000000
0.016699
-0.004239
0.000000
0.000000
0.016205
0.000000
0.000000
0.000000
Jacques, D.A.
Ripin, N.
Wilkinson-White, L.E.
Guss, J.M.
Matthews, J.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
72.390
74.570
73.630
35.195
62.415
66.046
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
S
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
N
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
S
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
R
C
N
449
N
O
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
N
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
Y
493
N
C
Y
494
N
C
Y
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
N
499
N
O
N
500
N
O
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
N
N
513
S
C
N
514
N
C
N
515
N
O
N
516
N
C
N
517
N
C
N
518
N
C
N
519
N
O
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
Y
469
N
sing
Y
470
N
sing
N
471
N
sing
Y
472
N
sing
Y
473
N
doub
N
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
doub
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
Y
492
N
doub
Y
493
N
sing
Y
494
N
sing
N
495
N
sing
Y
496
N
doub
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
doub
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
US
Protein Sci.
PRCIEI
0795
1469-896X
24
1649
1659
10.1002/pro.2760
26234528
GATA1 directly mediates interactions with closely spaced pseudopalindromic but not distantly spaced double GATA sites on DNA.
2015
10.2210/pdb3vek/pdb
pdb_00003vek
100
1
IMAGE PLATE
2011-09-15
MAR scanner 345 mm plate
CONFOCAL MAXFLUX MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007 HF
6114.963
DNA (5'-D(*TP*TP*GP*TP*CP*TP*TP*AP*TP*CP*AP*GP*AP*TP*GP*GP*AP*CP*TP*C)-3')
2
syn
polymer
6151.020
DNA (5'-D(*AP*AP*GP*AP*GP*TP*CP*CP*AP*TP*CP*TP*GP*AP*TP*AP*AP*GP*AP*C)-3')
2
syn
polymer
13507.752
Erythroid transcription factor
N and C Fingers, residues 200-318
2
man
polymer
65.409
ZINC ION
14
syn
non-polymer
Eryf1, GATA-binding factor 1, GATA-1, GF-1, NF-E1 DNA-binding protein
no
no
(DT)(DT)(DG)(DT)(DC)(DT)(DT)(DA)(DT)(DC)(DA)(DG)(DA)(DT)(DG)(DG)(DA)(DC)(DT)(DC)
TTGTCTTATCAGATGGACTC
A,D
polydeoxyribonucleotide
no
no
(DA)(DA)(DG)(DA)(DG)(DT)(DC)(DC)(DA)(DT)(DC)(DT)(DG)(DA)(DT)(DA)(DA)(DG)(DA)(DC)
AAGAGTCCATCTGATAAGAC
B,E
polydeoxyribonucleotide
no
no
EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRMIVSKRAGTQCTNCQTTTTTLWRRNASGDPVC
NACGLYFKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRG
EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRMIVSKRAGTQCTNCQTTTTTLWRRNASGDPVC
NACGLYFKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRG
C,F
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Gata1
10090
Mus musculus
562
Escherichia coli
Rosetta 2
plasmid
pET-11a
1
2.52
51.25
1.374
VAPOR DIFFUSION, HANGING DROP
6.0
20% PEG 6000, 0.01M ZnCl2, 0.1M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
-6.089
1
A
3
B
40
3.691
A_DG3:DC40_B
1
-16.311
-1.864
-0.249
-0.073
-6.136
1
20
A
4
B
39
-7.855
A_DT4:DA39_B
2
-16.545
-0.310
0.182
0.169
-8.142
1
19
A
5
B
38
3.842
A_DC5:DG38_B
3
-7.597
-0.061
0.138
-0.074
-9.526
1
20
A
6
B
37
4.328
A_DT6:DA37_B
4
-15.858
0.078
0.431
-0.179
3.651
1
20
A
7
B
36
7.150
A_DT7:DA36_B
5
-2.037
0.021
-0.431
-0.164
2.703
1
20
A
8
B
35
-0.073
A_DA8:DT35_B
6
-17.917
-0.285
0.173
-0.209
7.366
1
20
A
9
B
34
7.928
A_DT9:DA34_B
7
-9.493
-0.013
0.388
0.036
-0.092
1
19
A
10
B
33
-1.150
A_DC10:DG33_B
8
-28.496
-0.086
0.380
-0.197
1.399
1
20
A
11
B
32
3.312
A_DA11:DT32_B
9
-4.310
-0.004
0.600
-0.151
5.536
1
19
A
12
B
31
1.011
A_DG12:DC31_B
10
-20.962
-0.355
0.404
-0.264
-12.060
1
20
A
13
B
30
5.678
A_DA13:DT30_B
11
-12.904
-0.248
-0.015
-0.027
-10.038
1
20
A
14
B
29
0.340
A_DT14:DA29_B
12
-15.094
0.667
0.452
-0.025
-5.169
1
19
A
15
B
28
0.954
A_DG15:DC28_B
13
-2.487
-0.356
-0.066
-0.175
10.422
1
19
A
16
B
27
0.651
A_DG16:DC27_B
14
-17.753
0.016
0.241
-0.070
10.086
A
17
B
26
6.699
A_DA17:DT26_B
15
-21.660
0.262
0.105
0.186
-6.534
1
19
A
18
B
25
2.276
A_DC18:DG25_B
16
-18.828
0.875
0.364
-0.050
-7.083
1
20
A
19
B
24
1.501
A_DT19:DA24_B
17
-18.495
0.274
0.053
0.031
-2.772
1
A
20
B
23
13.543
A_DC20:DG23_B
18
-16.435
-0.606
0.454
0.526
-7.408
1
D
3
E
40
5.646
D_DG3:DC40_E
19
-14.004
-1.661
-0.424
0.038
-6.603
1
20
D
4
E
39
-6.606
D_DT4:DA39_E
20
-18.424
-0.550
0.142
0.105
-9.176
1
19
D
5
E
38
-0.129
D_DC5:DG38_E
21
-7.262
-0.186
0.414
-0.162
-15.826
1
20
D
6
E
37
2.831
D_DT6:DA37_E
22
-12.667
0.029
0.865
-0.238
-1.737
1
20
D
7
E
36
8.180
D_DT7:DA36_E
23
1.962
-0.027
-0.207
-0.147
4.352
1
20
D
8
E
35
0.986
D_DA8:DT35_E
24
-17.560
-0.135
0.255
-0.135
9.109
1
20
D
9
E
34
6.549
D_DT9:DA34_E
25
-7.855
0.080
0.307
-0.030
-3.125
1
19
D
10
E
33
-3.155
D_DC10:DG33_E
26
-23.912
-0.059
0.162
-0.257
-4.635
1
20
D
11
E
32
2.247
D_DA11:DT32_E
27
-2.787
0.015
0.389
-0.146
2.166
1
19
D
12
E
31
1.584
D_DG12:DC31_E
28
-21.480
-0.273
0.269
-0.212
-12.503
1
20
D
13
E
30
6.229
D_DA13:DT30_E
29
-11.337
-0.162
-0.022
-0.005
-12.420
1
20
D
14
E
29
1.590
D_DT14:DA29_E
30
-14.915
0.279
0.503
0.004
-11.822
1
19
D
15
E
28
0.674
D_DG15:DC28_E
31
-7.125
-0.256
-0.388
-0.162
10.648
1
19
D
16
E
27
1.432
D_DG16:DC27_E
32
-13.332
0.091
0.446
-0.101
9.588
1
20
D
17
E
26
6.391
D_DA17:DT26_E
33
-20.952
0.213
0.115
0.087
-6.782
1
19
D
18
E
25
1.228
D_DC18:DG25_E
34
-21.418
0.703
0.472
-0.126
-4.064
1
20
D
19
E
24
3.993
D_DT19:DA24_E
35
-14.364
0.503
-0.079
-0.012
-2.164
1
D
20
E
23
12.083
D_DC20:DG23_E
36
-15.353
-0.223
0.312
0.332
3.303
44.376
A
A
3
4
1.647
B
B
40
39
3.270
1.241
-0.546
-0.182
AA_DG3DT4:DA39DC40_BB
1
-4.775
6.334
44.115
-0.357
0.277
3.448
38.427
A
A
4
5
-0.611
B
B
39
38
3.400
-0.402
1.137
0.293
AA_DT4DC5:DG38DA39_BB
2
1.921
-2.920
38.379
0.497
-1.477
3.550
31.402
A
A
5
6
7.219
B
B
38
37
3.519
3.897
-0.466
0.363
AA_DC5DT6:DA37DG38_BB
3
-1.028
1.905
31.148
-0.122
0.652
3.299
37.084
A
A
6
7
2.474
B
B
37
36
3.017
1.561
1.520
0.724
AA_DT6DT7:DA36DA37_BB
4
8.190
-12.981
36.166
0.934
-1.317
3.684
38.979
A
A
7
8
-3.426
B
B
36
35
3.417
-2.267
-1.827
0.719
AA_DT7DA8:DT35DA36_BB
5
-8.710
13.163
37.965
1.380
1.578
3.164
30.954
A
A
8
9
-6.758
B
B
35
34
3.161
-3.598
0.757
-0.543
AA_DA8DT9:DA34DT35_BB
6
-1.483
2.786
30.714
-0.344
-1.697
3.332
41.117
A
A
9
10
-11.649
B
B
34
33
3.372
-8.131
0.047
-0.110
AA_DT9DC10:DG33DA34_BB
7
0.973
-1.394
40.328
0.756
0.043
2.951
35.701
A
A
10
11
9.507
B
B
33
32
3.121
5.803
0.329
-0.896
AA_DC10DA11:DT32DG33_BB
8
1.323
-2.168
35.217
-2.246
-0.358
3.161
35.667
A
A
11
12
4.586
B
B
32
31
3.220
2.806
-0.124
-0.675
AA_DA11DG12:DC31DT32_BB
9
-0.724
1.183
35.553
-1.500
0.100
3.482
41.753
A
A
12
13
0.124
B
B
31
30
3.499
0.088
-0.243
-0.422
AA_DG12DA13:DT30DC31_BB
10
2.184
-3.065
41.698
-0.602
0.586
3.419
35.171
A
A
13
14
-6.550
B
B
30
29
3.339
-3.938
-0.639
-0.414
AA_DA13DT14:DA29DT30_BB
11
-4.901
8.152
34.622
-0.074
0.297
3.310
33.393
A
A
14
15
0.962
B
B
29
28
3.199
0.551
0.908
0.742
AA_DT14DG15:DC28DA29_BB
12
5.116
-8.938
33.006
1.201
-0.732
3.203
34.491
A
A
15
16
8.454
B
B
28
27
3.042
4.970
-0.890
0.589
AA_DG15DG16:DC27DC28_BB
13
-6.187
10.523
33.592
0.246
0.572
3.262
37.722
A
A
16
17
1.160
B
B
27
26
3.266
0.750
-0.213
-0.045
AA_DG16DA17:DT26DC27_BB
14
0.337
-0.522
37.713
-0.167
0.373
3.644
34.732
A
A
17
18
1.174
B
B
26
25
3.705
0.699
0.109
-0.988
AA_DA17DC18:DG25DT26_BB
15
-4.354
7.313
34.460
-1.775
-0.934
3.077
35.740
A
A
18
19
6.534
B
B
25
24
3.232
3.986
-0.293
-0.494
AA_DC18DT19:DA24DG25_BB
16
5.625
-9.219
35.090
-1.365
1.268
3.037
30.914
A
A
19
20
7.467
B
B
24
23
3.089
3.969
0.545
-0.003
AA_DT19DC20:DG23DA24_BB
17
-1.404
2.642
30.633
-0.728
-1.279
3.263
42.256
D
D
3
4
0.475
E
E
40
39
3.224
0.342
-0.570
-0.175
DD_DG3DT4:DA39DC40_EE
18
-4.498
6.250
42.026
-0.277
0.332
3.405
39.528
D
D
4
5
-1.266
E
E
39
38
3.415
-0.856
1.021
0.326
DD_DT4DC5:DG38DA39_EE
19
-0.092
0.136
39.519
0.587
-1.520
3.652
31.502
D
D
5
6
7.584
E
E
38
37
3.651
4.102
-0.389
0.095
DD_DC5DT6:DA37DG38_EE
20
-2.501
4.624
31.143
-0.685
0.193
3.337
38.259
D
D
6
7
-1.543
E
E
37
36
3.069
-1.003
1.622
0.563
DD_DT6DT7:DA36DA37_EE
21
8.805
-13.548
37.256
0.984
-1.377
3.336
38.830
D
D
7
8
-7.678
E
E
36
35
3.222
-5.071
-1.817
0.786
DD_DT7DA8:DT35DA36_EE
22
-6.128
9.278
38.037
1.809
1.976
3.193
30.631
D
D
8
9
-5.990
E
E
35
34
3.176
-3.158
0.691
-0.578
DD_DA8DT9:DA34DT35_EE
23
-1.081
2.049
30.453
-0.486
-1.516
3.404
40.660
D
D
9
10
-8.567
E
E
34
33
3.413
-5.932
-0.032
-0.197
DD_DT9DC10:DG33DA34_EE
24
1.430
-2.065
40.218
0.407
0.213
2.952
35.850
D
D
10
11
11.110
E
E
33
32
3.188
6.799
0.314
-1.032
DD_DC10DA11:DT32DG33_EE
25
1.038
-1.697
35.206
-2.600
-0.370
3.260
36.078
D
D
11
12
1.025
E
E
32
31
3.267
0.635
-0.128
-0.513
DD_DA11DG12:DC31DT32_EE
26
-0.957
1.545
36.061
-0.918
0.071
3.457
40.583
D
D
12
13
-1.564
E
E
31
30
3.455
-1.084
-0.198
-0.445
DD_DG12DA13:DT30DC31_EE
27
1.385
-1.998
40.546
-0.514
0.449
3.442
33.717
D
D
13
14
-5.321
E
E
30
29
3.377
-3.074
-0.514
-0.457
DD_DA13DT14:DA29DT30_EE
28
-4.295
7.434
33.313
-0.264
0.154
3.418
36.609
D
D
14
15
6.449
E
E
29
28
3.281
4.013
0.678
0.824
DD_DT14DG15:DC28DA29_EE
29
8.016
-12.884
35.531
0.738
0.068
2.966
35.323
D
D
15
16
5.078
E
E
28
27
2.777
3.025
-0.909
0.650
DD_DG15DG16:DC27DC28_EE
30
-11.522
19.344
33.314
0.667
-0.044
3.342
36.356
D
D
16
17
-0.166
E
E
27
26
3.360
-0.103
-0.258
-0.212
DD_DG16DA17:DT26DC27_EE
31
2.025
-3.247
36.301
-0.325
0.702
3.666
34.332
D
D
17
18
-2.455
E
E
26
25
3.682
-1.445
0.192
-0.950
DD_DA17DC18:DG25DT26_EE
32
-4.389
7.457
34.029
-1.354
-1.101
2.963
37.958
D
D
18
19
7.308
E
E
25
24
3.111
4.716
-0.109
-0.465
DD_DC18DT19:DA24DG25_EE
33
7.055
-10.932
37.031
-1.282
1.015
3.163
31.830
D
D
19
20
5.979
E
E
24
23
3.199
3.273
0.454
-0.043
DD_DT19DC20:DG23DA24_EE
34
-1.037
1.894
31.649
-0.661
-1.013
citation
citation_author
database_2
pdbx_entity_src_syn
pdbx_struct_conn_angle
struct_conn
struct_ncs_dom_lim
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Database references
Derived calculations
Refinement description
Source and taxonomy
Data collection
Refinement description
1
0
2013-01-16
1
1
2023-05-24
1
2
2023-11-08
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_database_2.pdbx_DOI
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_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.organism_scientific
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
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_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
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_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
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_struct_conn.ptnr2_auth_asym_id
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_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.end_auth_comp_id
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_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
_struct_site.pdbx_auth_asym_id
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Both Zn Fingers of GATA1 Bound to Palindromic DNA Recognition Site, P21 Crystal Form
RCSB
Y
PDBJ
2012-01-09
REL
REL
ZN
ZINC ION
This sequence occurs naturally in humans
32630
synthetic construct
sample
This sequence occurs naturally in humans
32630
synthetic construct
sample
3VD6
PDB ENTRY 3VD6
PDB
experimental model
ZN
5
4
ZN
ZN
101
A
ZN
6
4
ZN
ZN
102
A
ZN
4
4
ZN
ZN
101
B
ZN
500
4
ZN
ZN
401
C
ZN
501
4
ZN
ZN
402
C
ZN
7
4
ZN
ZN
403
C
ZN
8
4
ZN
ZN
101
D
ZN
9
4
ZN
ZN
102
D
ZN
3
4
ZN
ZN
101
E
ZN
500
4
ZN
ZN
401
F
ZN
501
4
ZN
ZN
402
F
ZN
1
4
ZN
ZN
403
F
ZN
2
4
ZN
ZN
404
F
ZN
10
4
ZN
ZN
405
F
40.250
2.630
2.630
48.680
48.680
Phaser MODE: MR_AUTO
DT
1
n
1
DT
1
A
DT
2
n
2
DT
2
A
DG
3
n
3
DG
3
A
DT
4
n
4
DT
4
A
DC
5
n
5
DC
5
A
DT
6
n
6
DT
6
A
DT
7
n
7
DT
7
A
DA
8
n
8
DA
8
A
DT
9
n
9
DT
9
A
DC
10
n
10
DC
10
A
DA
11
n
11
DA
11
A
DG
12
n
12
DG
12
A
DA
13
n
13
DA
13
A
DT
14
n
14
DT
14
A
DG
15
n
15
DG
15
A
DG
16
n
16
DG
16
A
DA
17
n
17
DA
17
A
DC
18
n
18
DC
18
A
DT
19
n
19
DT
19
A
DC
20
n
20
DC
20
A
DA
21
n
1
DA
21
B
DA
22
n
2
DA
22
B
DG
23
n
3
DG
23
B
DA
24
n
4
DA
24
B
DG
25
n
5
DG
25
B
DT
26
n
6
DT
26
B
DC
27
n
7
DC
27
B
DC
28
n
8
DC
28
B
DA
29
n
9
DA
29
B
DT
30
n
10
DT
30
B
DC
31
n
11
DC
31
B
DT
32
n
12
DT
32
B
DG
33
n
13
DG
33
B
DA
34
n
14
DA
34
B
DT
35
n
15
DT
35
B
DA
36
n
16
DA
36
B
DA
37
n
17
DA
37
B
DG
38
n
18
DG
38
B
DA
39
n
19
DA
39
B
DC
40
n
20
DC
40
B
n
1
200
C
ALA
201
n
2
ALA
201
C
ARG
202
n
3
ARG
202
C
GLU
203
n
4
GLU
203
C
CYS
204
n
5
CYS
204
C
VAL
205
n
6
VAL
205
C
ASN
206
n
7
ASN
206
C
CYS
207
n
8
CYS
207
C
GLY
208
n
9
GLY
208
C
ALA
209
n
10
ALA
209
C
THR
210
n
11
THR
210
C
ALA
211
n
12
ALA
211
C
THR
212
n
13
THR
212
C
PRO
213
n
14
PRO
213
C
LEU
214
n
15
LEU
214
C
TRP
215
n
16
TRP
215
C
ARG
216
n
17
ARG
216
C
ARG
217
n
18
ARG
217
C
ASP
218
n
19
ASP
218
C
ARG
219
n
20
ARG
219
C
THR
220
n
21
THR
220
C
GLY
221
n
22
GLY
221
C
HIS
222
n
23
HIS
222
C
TYR
223
n
24
TYR
223
C
LEU
224
n
25
LEU
224
C
CYS
225
n
26
CYS
225
C
ASN
226
n
27
ASN
226
C
ALA
227
n
28
ALA
227
C
CYS
228
n
29
CYS
228
C
GLY
229
n
30
GLY
229
C
LEU
230
n
31
LEU
230
C
TYR
231
n
32
TYR
231
C
HIS
232
n
33
HIS
232
C
LYS
233
n
34
LYS
233
C
MET
234
n
35
MET
234
C
ASN
235
n
36
ASN
235
C
GLY
236
n
37
GLY
236
C
GLN
237
n
38
GLN
237
C
ASN
238
n
39
ASN
238
C
ARG
239
n
40
ARG
239
C
PRO
240
n
41
PRO
240
C
LEU
241
n
42
LEU
241
C
n
43
242
C
n
44
243
C
n
45
244
C
n
46
245
C
n
47
246
C
n
48
247
C
n
49
248
C
n
50
249
C
n
51
250
C
n
52
251
C
n
53
252
C
n
54
253
C
n
55
254
C
n
56
255
C
THR
256
n
57
THR
256
C
GLN
257
n
58
GLN
257
C
CYS
258
n
59
CYS
258
C
THR
259
n
60
THR
259
C
ASN
260
n
61
ASN
260
C
CYS
261
n
62
CYS
261
C
GLN
262
n
63
GLN
262
C
THR
263
n
64
THR
263
C
THR
264
n
65
THR
264
C
THR
265
n
66
THR
265
C
THR
266
n
67
THR
266
C
THR
267
n
68
THR
267
C
LEU
268
n
69
LEU
268
C
TRP
269
n
70
TRP
269
C
ARG
270
n
71
ARG
270
C
ARG
271
n
72
ARG
271
C
ASN
272
n
73
ASN
272
C
ALA
273
n
74
ALA
273
C
SER
274
n
75
SER
274
C
GLY
275
n
76
GLY
275
C
ASP
276
n
77
ASP
276
C
PRO
277
n
78
PRO
277
C
VAL
278
n
79
VAL
278
C
CYS
279
n
80
CYS
279
C
ASN
280
n
81
ASN
280
C
ALA
281
n
82
ALA
281
C
CYS
282
n
83
CYS
282
C
GLY
283
n
84
GLY
283
C
LEU
284
n
85
LEU
284
C
TYR
285
n
86
TYR
285
C
PHE
286
n
87
PHE
286
C
LYS
287
n
88
LYS
287
C
LEU
288
n
89
LEU
288
C
HIS
289
n
90
HIS
289
C
GLN
290
n
91
GLN
290
C
VAL
291
n
92
VAL
291
C
ASN
292
n
93
ASN
292
C
ARG
293
n
94
ARG
293
C
PRO
294
n
95
PRO
294
C
LEU
295
n
96
LEU
295
C
THR
296
n
97
THR
296
C
MET
297
n
98
MET
297
C
ARG
298
n
99
ARG
298
C
LYS
299
n
100
LYS
299
C
ASP
300
n
101
ASP
300
C
GLY
301
n
102
GLY
301
C
ILE
302
n
103
ILE
302
C
GLN
303
n
104
GLN
303
C
THR
304
n
105
THR
304
C
ARG
305
n
106
ARG
305
C
ASN
306
n
107
ASN
306
C
ARG
307
n
108
ARG
307
C
LYS
308
n
109
LYS
308
C
ALA
309
n
110
ALA
309
C
SER
310
n
111
SER
310
C
n
112
311
C
n
113
312
C
n
114
313
C
n
115
314
C
n
116
315
C
n
117
316
C
n
118
317
C
n
119
318
C
DT
1
n
1
DT
1
D
DT
2
n
2
DT
2
D
DG
3
n
3
DG
3
D
DT
4
n
4
DT
4
D
DC
5
n
5
DC
5
D
DT
6
n
6
DT
6
D
DT
7
n
7
DT
7
D
DA
8
n
8
DA
8
D
DT
9
n
9
DT
9
D
DC
10
n
10
DC
10
D
DA
11
n
11
DA
11
D
DG
12
n
12
DG
12
D
DA
13
n
13
DA
13
D
DT
14
n
14
DT
14
D
DG
15
n
15
DG
15
D
DG
16
n
16
DG
16
D
DA
17
n
17
DA
17
D
DC
18
n
18
DC
18
D
DT
19
n
19
DT
19
D
DC
20
n
20
DC
20
D
DA
21
n
1
DA
21
E
DA
22
n
2
DA
22
E
DG
23
n
3
DG
23
E
DA
24
n
4
DA
24
E
DG
25
n
5
DG
25
E
DT
26
n
6
DT
26
E
DC
27
n
7
DC
27
E
DC
28
n
8
DC
28
E
DA
29
n
9
DA
29
E
DT
30
n
10
DT
30
E
DC
31
n
11
DC
31
E
DT
32
n
12
DT
32
E
DG
33
n
13
DG
33
E
DA
34
n
14
DA
34
E
DT
35
n
15
DT
35
E
DA
36
n
16
DA
36
E
DA
37
n
17
DA
37
E
DG
38
n
18
DG
38
E
DA
39
n
19
DA
39
E
DC
40
n
20
DC
40
E
n
1
200
F
ALA
201
n
2
ALA
201
F
ARG
202
n
3
ARG
202
F
GLU
203
n
4
GLU
203
F
CYS
204
n
5
CYS
204
F
VAL
205
n
6
VAL
205
F
ASN
206
n
7
ASN
206
F
CYS
207
n
8
CYS
207
F
GLY
208
n
9
GLY
208
F
ALA
209
n
10
ALA
209
F
THR
210
n
11
THR
210
F
ALA
211
n
12
ALA
211
F
THR
212
n
13
THR
212
F
PRO
213
n
14
PRO
213
F
LEU
214
n
15
LEU
214
F
TRP
215
n
16
TRP
215
F
ARG
216
n
17
ARG
216
F
ARG
217
n
18
ARG
217
F
ASP
218
n
19
ASP
218
F
ARG
219
n
20
ARG
219
F
THR
220
n
21
THR
220
F
GLY
221
n
22
GLY
221
F
HIS
222
n
23
HIS
222
F
TYR
223
n
24
TYR
223
F
LEU
224
n
25
LEU
224
F
CYS
225
n
26
CYS
225
F
ASN
226
n
27
ASN
226
F
ALA
227
n
28
ALA
227
F
CYS
228
n
29
CYS
228
F
GLY
229
n
30
GLY
229
F
LEU
230
n
31
LEU
230
F
TYR
231
n
32
TYR
231
F
HIS
232
n
33
HIS
232
F
LYS
233
n
34
LYS
233
F
MET
234
n
35
MET
234
F
ASN
235
n
36
ASN
235
F
GLY
236
n
37
GLY
236
F
GLN
237
n
38
GLN
237
F
ASN
238
n
39
ASN
238
F
ARG
239
n
40
ARG
239
F
PRO
240
n
41
PRO
240
F
LEU
241
n
42
LEU
241
F
n
43
242
F
n
44
243
F
n
45
244
F
n
46
245
F
n
47
246
F
n
48
247
F
n
49
248
F
n
50
249
F
n
51
250
F
n
52
251
F
n
53
252
F
n
54
253
F
n
55
254
F
n
56
255
F
THR
256
n
57
THR
256
F
GLN
257
n
58
GLN
257
F
CYS
258
n
59
CYS
258
F
THR
259
n
60
THR
259
F
ASN
260
n
61
ASN
260
F
CYS
261
n
62
CYS
261
F
GLN
262
n
63
GLN
262
F
THR
263
n
64
THR
263
F
THR
264
n
65
THR
264
F
THR
265
n
66
THR
265
F
THR
266
n
67
THR
266
F
THR
267
n
68
THR
267
F
LEU
268
n
69
LEU
268
F
TRP
269
n
70
TRP
269
F
ARG
270
n
71
ARG
270
F
ARG
271
n
72
ARG
271
F
ASN
272
n
73
ASN
272
F
ALA
273
n
74
ALA
273
F
SER
274
n
75
SER
274
F
GLY
275
n
76
GLY
275
F
ASP
276
n
77
ASP
276
F
PRO
277
n
78
PRO
277
F
VAL
278
n
79
VAL
278
F
CYS
279
n
80
CYS
279
F
ASN
280
n
81
ASN
280
F
ALA
281
n
82
ALA
281
F
CYS
282
n
83
CYS
282
F
GLY
283
n
84
GLY
283
F
LEU
284
n
85
LEU
284
F
TYR
285
n
86
TYR
285
F
PHE
286
n
87
PHE
286
F
LYS
287
n
88
LYS
287
F
LEU
288
n
89
LEU
288
F
HIS
289
n
90
HIS
289
F
GLN
290
n
91
GLN
290
F
VAL
291
n
92
VAL
291
F
ASN
292
n
93
ASN
292
F
ARG
293
n
94
ARG
293
F
PRO
294
n
95
PRO
294
F
LEU
295
n
96
LEU
295
F
THR
296
n
97
THR
296
F
MET
297
n
98
MET
297
F
ARG
298
n
99
ARG
298
F
LYS
299
n
100
LYS
299
F
ASP
300
n
101
ASP
300
F
GLY
301
n
102
GLY
301
F
ILE
302
n
103
ILE
302
F
GLN
303
n
104
GLN
303
F
THR
304
n
105
THR
304
F
ARG
305
n
106
ARG
305
F
ASN
306
n
107
ASN
306
F
ARG
307
n
108
ARG
307
F
LYS
308
n
109
LYS
308
F
ALA
309
n
110
ALA
309
F
SER
310
n
111
SER
310
F
n
112
311
F
n
113
312
F
n
114
313
F
n
115
314
F
n
116
315
F
n
117
316
F
n
118
317
F
n
119
318
F
2.3078
0.0520
2.1728
1.5769
1.1959
10.2946
0.2590
-0.2877
-0.1089
0.0877
0.2870
-0.2276
-0.1422
0.4533
-0.5459
0.2476
-0.0874
-0.0592
0.2898
-0.0405
0.2918
refined
-8.2088
-9.1999
19.8625
X-RAY DIFFRACTION
6.0438
1.7708
3.8113
7.0782
-1.6073
7.1215
0.2085
-0.3944
-0.4998
0.0087
0.0856
-0.1661
0.0793
0.1913
-0.2941
0.1152
0.0316
-0.0216
0.4016
0.0918
0.1908
refined
-14.760
-7.800
16.572
X-RAY DIFFRACTION
2.6098
-0.0287
-1.9479
1.5499
1.3932
11.2000
0.2960
0.1971
0.0451
-0.1418
0.2827
-0.2001
0.0082
0.4031
-0.5787
0.2350
0.0984
0.0322
0.2998
-0.0349
0.2558
refined
-8.1681
24.1483
38.4492
X-RAY DIFFRACTION
10.7139
-3.2362
-2.1838
5.7082
-0.1111
8.6864
0.2308
0.2899
0.4756
-0.1873
-0.0729
-0.1623
-0.1306
0.0823
-0.1579
0.1111
-0.0439
-0.0255
0.3161
0.1247
0.1562
refined
-14.774
22.745
41.735
X-RAY DIFFRACTION
4.6096
0.3920
1.4215
2.5323
-2.6366
10.6213
-0.2785
0.2680
0.5640
-0.1556
0.1668
-0.0154
-0.9207
-0.2324
0.1117
0.2309
-0.0131
0.0355
0.0291
0.0318
0.2818
refined
-17.208
-5.787
19.335
X-RAY DIFFRACTION
3.2972
-0.7420
-0.7432
3.3813
-2.7923
9.7520
-0.2508
-0.1020
-0.4487
0.2613
0.1509
0.0883
0.8548
-0.1265
0.0999
0.2086
0.0091
-0.0460
0.1455
0.0621
0.2487
refined
-17.189
20.691
39.062
X-RAY DIFFRACTION
A
1
A
20
X-RAY DIFFRACTION
1
B
21
B
40
X-RAY DIFFRACTION
1
C
201
C
310
X-RAY DIFFRACTION
2
D
1
D
20
X-RAY DIFFRACTION
3
E
21
E
40
X-RAY DIFFRACTION
3
F
201
F
310
X-RAY DIFFRACTION
4
C
401
C
402
X-RAY DIFFRACTION
5
F
401
F
402
X-RAY DIFFRACTION
6
author_and_software_defined_assembly
PISA
3
trimeric
author_and_software_defined_assembly
PISA
3
trimeric
5660
-157
11970
5660
-160
11960
A
DT
6
A
OP1
DT
6
1_555
A
ZN
101
G
ZN
ZN
1_555
C
HIS
289
C
NE2
HIS
90
1_555
111.6
C
CYS
204
C
SG
CYS
5
1_555
C
ZN
401
J
ZN
ZN
1_555
C
CYS
207
C
SG
CYS
8
1_555
101.9
C
CYS
204
C
SG
CYS
5
1_555
C
ZN
401
J
ZN
ZN
1_555
C
CYS
225
C
SG
CYS
26
1_555
111.3
C
CYS
207
C
SG
CYS
8
1_555
C
ZN
401
J
ZN
ZN
1_555
C
CYS
225
C
SG
CYS
26
1_555
117.0
C
CYS
204
C
SG
CYS
5
1_555
C
ZN
401
J
ZN
ZN
1_555
C
CYS
228
C
SG
CYS
29
1_555
104.6
C
CYS
207
C
SG
CYS
8
1_555
C
ZN
401
J
ZN
ZN
1_555
C
CYS
228
C
SG
CYS
29
1_555
120.3
C
CYS
225
C
SG
CYS
26
1_555
C
ZN
401
J
ZN
ZN
1_555
C
CYS
228
C
SG
CYS
29
1_555
101.1
C
ASP
218
C
OD2
ASP
19
1_555
C
ZN
403
L
ZN
ZN
1_555
C
HIS
222
C
ND1
HIS
23
1_555
106.7
C
CYS
258
C
SG
CYS
59
1_555
C
ZN
402
K
ZN
ZN
1_555
C
CYS
261
C
SG
CYS
62
1_555
94.5
C
CYS
258
C
SG
CYS
59
1_555
C
ZN
402
K
ZN
ZN
1_555
C
CYS
279
C
SG
CYS
80
1_555
145.0
C
CYS
261
C
SG
CYS
62
1_555
C
ZN
402
K
ZN
ZN
1_555
C
CYS
279
C
SG
CYS
80
1_555
118.4
C
CYS
258
C
SG
CYS
59
1_555
C
ZN
402
K
ZN
ZN
1_555
C
CYS
282
C
SG
CYS
83
1_555
98.5
C
CYS
261
C
SG
CYS
62
1_555
C
ZN
402
K
ZN
ZN
1_555
C
CYS
282
C
SG
CYS
83
1_555
90.2
C
CYS
279
C
SG
CYS
80
1_555
C
ZN
402
K
ZN
ZN
1_555
C
CYS
282
C
SG
CYS
83
1_555
93.3
D
DT
6
D
OP1
DT
6
1_555
D
ZN
101
M
ZN
ZN
1_555
D
DT
6
D
OP2
DT
6
1_555
61.0
D
DT
6
D
OP1
DT
6
1_555
D
ZN
101
M
ZN
ZN
1_555
F
HIS
289
F
NE2
HIS
90
1_555
115.0
D
DT
6
D
OP2
DT
6
1_555
D
ZN
101
M
ZN
ZN
1_555
F
HIS
289
F
NE2
HIS
90
1_555
85.4
F
CYS
204
F
SG
CYS
5
1_555
F
ZN
401
P
ZN
ZN
1_555
F
CYS
207
F
SG
CYS
8
1_555
104.6
F
CYS
204
F
SG
CYS
5
1_555
F
ZN
401
P
ZN
ZN
1_555
F
CYS
225
F
SG
CYS
26
1_555
111.3
F
CYS
207
F
SG
CYS
8
1_555
F
ZN
401
P
ZN
ZN
1_555
F
CYS
225
F
SG
CYS
26
1_555
113.0
F
CYS
204
F
SG
CYS
5
1_555
F
ZN
401
P
ZN
ZN
1_555
F
CYS
228
F
SG
CYS
29
1_555
112.1
F
CYS
207
F
SG
CYS
8
1_555
F
ZN
401
P
ZN
ZN
1_555
F
CYS
228
F
SG
CYS
29
1_555
117.3
F
CYS
225
F
SG
CYS
26
1_555
F
ZN
401
P
ZN
ZN
1_555
F
CYS
228
F
SG
CYS
29
1_555
98.7
F
ASP
218
F
OD2
ASP
19
1_555
F
ZN
405
T
ZN
ZN
1_555
F
HIS
222
F
ND1
HIS
23
1_555
106.1
F
CYS
258
F
SG
CYS
59
1_555
F
ZN
402
Q
ZN
ZN
1_555
F
CYS
261
F
SG
CYS
62
1_555
105.3
F
CYS
258
F
SG
CYS
59
1_555
F
ZN
402
Q
ZN
ZN
1_555
F
CYS
279
F
SG
CYS
80
1_555
135.7
F
CYS
261
F
SG
CYS
62
1_555
F
ZN
402
Q
ZN
ZN
1_555
F
CYS
279
F
SG
CYS
80
1_555
113.9
F
CYS
258
F
SG
CYS
59
1_555
F
ZN
402
Q
ZN
ZN
1_555
F
CYS
282
F
SG
CYS
83
1_555
102.4
F
CYS
261
F
SG
CYS
62
1_555
F
ZN
402
Q
ZN
ZN
1_555
F
CYS
282
F
SG
CYS
83
1_555
94.9
F
CYS
279
F
SG
CYS
80
1_555
F
ZN
402
Q
ZN
ZN
1_555
F
CYS
282
F
SG
CYS
83
1_555
94.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
C
N
ARG
216
C
N
ARG
17
C
O
LEU
224
C
O
LEU
25
C
N
ARG
270
C
N
ARG
71
C
O
VAL
278
C
O
VAL
79
F
N
ARG
216
F
N
ARG
17
F
O
LEU
224
F
O
LEU
25
F
N
ARG
270
F
N
ARG
71
F
O
VAL
278
F
O
VAL
79
1
C
GLU
200
C
GLU
1
1
Y
1
C
ILE
242
C
ILE
43
1
Y
1
C
ARG
243
C
ARG
44
1
Y
1
C
PRO
244
C
PRO
45
1
Y
1
C
LYS
245
C
LYS
46
1
Y
1
C
LYS
246
C
LYS
47
1
Y
1
C
ARG
247
C
ARG
48
1
Y
1
C
MET
248
C
MET
49
1
Y
1
C
ILE
249
C
ILE
50
1
Y
1
C
VAL
250
C
VAL
51
1
Y
1
C
SER
251
C
SER
52
1
Y
1
C
LYS
252
C
LYS
53
1
Y
1
C
ARG
253
C
ARG
54
1
Y
1
C
ALA
254
C
ALA
55
1
Y
1
C
GLY
255
C
GLY
56
1
Y
1
C
GLY
311
C
GLY
112
1
Y
1
C
LYS
312
C
LYS
113
1
Y
1
C
GLY
313
C
GLY
114
1
Y
1
C
LYS
314
C
LYS
115
1
Y
1
C
LYS
315
C
LYS
116
1
Y
1
C
LYS
316
C
LYS
117
1
Y
1
C
ARG
317
C
ARG
118
1
Y
1
C
GLY
318
C
GLY
119
1
Y
1
F
GLU
200
F
GLU
1
1
Y
1
F
ILE
242
F
ILE
43
1
Y
1
F
ARG
243
F
ARG
44
1
Y
1
F
PRO
244
F
PRO
45
1
Y
1
F
LYS
245
F
LYS
46
1
Y
1
F
LYS
246
F
LYS
47
1
Y
1
F
ARG
247
F
ARG
48
1
Y
1
F
MET
248
F
MET
49
1
Y
1
F
ILE
249
F
ILE
50
1
Y
1
F
VAL
250
F
VAL
51
1
Y
1
F
SER
251
F
SER
52
1
Y
1
F
LYS
252
F
LYS
53
1
Y
1
F
ARG
253
F
ARG
54
1
Y
1
F
ALA
254
F
ALA
55
1
Y
1
F
GLY
255
F
GLY
56
1
Y
1
F
GLY
311
F
GLY
112
1
Y
1
F
LYS
312
F
LYS
113
1
Y
1
F
GLY
313
F
GLY
114
1
Y
1
F
LYS
314
F
LYS
115
1
Y
1
F
LYS
315
F
LYS
116
1
Y
1
F
LYS
316
F
LYS
117
1
Y
1
F
ARG
317
F
ARG
118
1
Y
1
F
GLY
318
F
GLY
119
1
Y
1
2.09
0.30
108.30
110.39
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
1
2.75
0.30
108.30
111.05
A
A
A
O4'
C1'
N1
DC
DC
DC
10
10
10
N
1
1.82
0.30
108.30
110.12
A
A
A
O4'
C1'
N9
DG
DG
DG
15
15
15
N
1
3.49
0.30
108.30
111.79
A
A
A
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
2.41
0.30
108.30
110.71
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
1
2.48
0.30
108.30
110.78
B
B
B
O4'
C1'
N1
DC
DC
DC
27
27
27
N
1
2.56
0.30
108.30
110.86
B
B
B
O4'
C1'
N1
DC
DC
DC
31
31
31
N
1
2.94
0.30
108.30
111.24
B
B
B
O4'
C1'
N9
DG
DG
DG
33
33
33
N
1
3.40
0.30
108.30
111.70
B
B
B
O4'
C1'
N9
DA
DA
DA
36
36
36
N
1
3.47
0.30
108.30
111.77
B
B
B
O4'
C1'
N9
DG
DG
DG
38
38
38
N
1
2.40
0.30
108.30
110.70
D
D
D
O4'
C1'
N1
DT
DT
DT
1
1
1
N
1
2.86
0.30
108.30
111.16
D
D
D
O4'
C1'
N1
DC
DC
DC
10
10
10
N
1
2.06
0.30
108.30
110.36
D
D
D
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
3.91
0.30
108.30
112.21
D
D
D
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
2.03
0.30
108.30
110.33
E
E
E
O4'
C1'
N9
DG
DG
DG
25
25
25
N
1
2.14
0.30
108.30
110.44
E
E
E
O4'
C1'
N1
DC
DC
DC
27
27
27
N
1
2.05
0.30
108.30
110.35
E
E
E
O4'
C1'
N1
DC
DC
DC
31
31
31
N
1
2.39
0.30
108.30
110.69
E
E
E
O4'
C1'
N9
DG
DG
DG
33
33
33
N
1
3.25
0.30
108.30
111.55
E
E
E
O4'
C1'
N9
DA
DA
DA
36
36
36
N
1
3.65
0.30
108.30
111.95
E
E
E
O4'
C1'
N9
DG
DG
DG
38
38
38
N
1
C
ASN
206
-95.57
-60.25
1
C
THR
212
-172.72
145.38
1
C
ASN
260
-74.95
-75.12
1
F
ASN
206
-96.28
-61.27
1
F
THR
212
-171.97
147.42
1
F
LEU
214
-160.70
113.52
1
F
ASN
260
-77.67
-73.81
138.110
65.7281
29.300
0.1000
-1.2200
0.5900
4.3300
1.2900
-4.8500
0.9220
0.8680
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: WITH TLS ADDED
0.2751
0.2349
0.2369
2.6300
48.68
732
14469
14469
5.1000
96.3200
0.2823
0.2462
1.000
1.000
0.7057
37.3800
0.3490
1.0666
0.3568
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
1.0670
0.3570
0.8000
0.8000
1.4000
PDB ENTRY 3VD6
MAXIMUM LIKELIHOOD
MASK
2.6300
48.68
0
3154
14
1628
1512
0.004
0.021
3362
0.001
0.020
1808
0.921
2.543
4884
0.881
3.000
4440
3.746
5.000
188
25.746
21.842
76
9.963
15.000
262
7.481
15.000
22
0.040
0.200
542
0.002
0.020
2556
0.001
0.020
494
0.510
2.000
950
0.081
2.000
388
0.977
3.000
1524
1.250
4.000
2412
1.988
6.000
3360
1
C
1
554
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.050
0.500
1
C
1
554
X-RAY DIFFRACTION
MEDIUM THERMAL
0.080
2.000
1
C
2
746
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.100
0.500
1
C
2
746
X-RAY DIFFRACTION
MEDIUM THERMAL
0.120
2.000
1
A
3
586
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.080
0.500
1
A
3
586
X-RAY DIFFRACTION
MEDIUM THERMAL
0.130
2.000
1
B
4
590
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.050
0.500
1
B
4
590
X-RAY DIFFRACTION
MEDIUM THERMAL
0.190
2.000
0.4550
0.4040
2.6960
56
963
1019
20
91.2300
2.630
50.000
3VEK
14526
14526
0
0
0.088
1.081
1
14.200
4.700
97.000
0.373
2.630
2.680
718
0.963
1
4.400
94.300
0.408
2.680
2.720
741
1.087
1
4.600
96.100
0.524
2.720
2.780
684
1.080
1
4.700
94.900
0.465
2.780
2.830
713
1.070
1
4.700
96.200
0.398
2.830
2.890
715
0.994
1
4.600
96.100
0.394
2.890
2.960
748
1.074
1
4.700
95.800
0.337
2.960
3.040
684
1.032
1
4.800
96.300
0.257
3.040
3.120
748
1.066
1
4.800
96.600
0.127
3.120
3.210
715
1.017
1
4.700
96.400
0.088
3.210
3.310
738
1.008
1
4.800
96.900
0.122
3.310
3.430
719
1.033
1
4.800
97.600
0.124
3.430
3.570
722
1.011
1
4.800
97.400
0.112
3.570
3.730
713
0.995
1
4.800
97.100
0.090
3.730
3.930
765
0.960
1
4.800
97.800
0.080
3.930
4.170
730
0.980
1
4.800
97.900
0.073
4.170
4.500
722
1.027
1
4.800
98.200
0.069
4.500
4.950
747
1.161
1
4.800
98.500
0.058
4.950
5.660
722
1.276
1
4.800
98.500
0.051
5.660
7.130
752
1.490
1
4.800
99.100
0.036
7.130
50.000
730
1.277
1
4.700
98.100
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Wed Jun 24 14:00:05 2009
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.1.4
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
MAR345dtb
data reduction
HKL-2000
data scaling
HKL-2000
Both Zn Fingers of GATA1 Bound to Palindromic DNA Recognition Site, P1 Crystal Form
1
N
N
2
N
N
3
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
C
CYS
225
C
CYS
26
HELX_P
C
GLY
236
C
GLY
37
1
1
12
C
CYS
279
C
CYS
80
HELX_P
C
GLN
290
C
GLN
91
1
2
12
C
PRO
294
C
PRO
95
HELX_P
C
ARG
298
C
ARG
99
5
3
5
F
CYS
225
F
CYS
26
HELX_P
F
GLY
236
F
GLY
37
1
4
12
F
CYS
279
F
CYS
80
HELX_P
F
GLN
290
F
GLN
91
1
5
12
F
PRO
294
F
PRO
95
HELX_P
F
ARG
298
F
ARG
99
5
6
5
metalc
2.265
A
DT
6
A
OP1
DT
6
1_555
A
ZN
101
G
ZN
ZN
1_555
metalc
2.296
A
DG
15
A
N7
DG
15
1_555
A
ZN
102
H
ZN
ZN
1_555
metalc
2.277
A
ZN
101
G
ZN
ZN
1_555
C
HIS
289
C
NE2
HIS
90
1_555
metalc
2.521
B
DG
38
B
N7
DG
18
1_555
B
ZN
101
I
ZN
ZN
1_555
metalc
2.466
C
CYS
204
C
SG
CYS
5
1_555
C
ZN
401
J
ZN
ZN
1_555
metalc
2.073
C
CYS
207
C
SG
CYS
8
1_555
C
ZN
401
J
ZN
ZN
1_555
metalc
2.525
C
ASP
218
C
OD2
ASP
19
1_555
C
ZN
403
L
ZN
ZN
1_555
metalc
2.283
C
HIS
222
C
ND1
HIS
23
1_555
C
ZN
403
L
ZN
ZN
1_555
metalc
2.166
C
CYS
225
C
SG
CYS
26
1_555
C
ZN
401
J
ZN
ZN
1_555
metalc
2.117
C
CYS
228
C
SG
CYS
29
1_555
C
ZN
401
J
ZN
ZN
1_555
metalc
2.541
C
CYS
258
C
SG
CYS
59
1_555
C
ZN
402
K
ZN
ZN
1_555
metalc
2.258
C
CYS
261
C
SG
CYS
62
1_555
C
ZN
402
K
ZN
ZN
1_555
metalc
2.500
C
CYS
279
C
SG
CYS
80
1_555
C
ZN
402
K
ZN
ZN
1_555
metalc
2.437
C
CYS
282
C
SG
CYS
83
1_555
C
ZN
402
K
ZN
ZN
1_555
metalc
2.510
D
DT
6
D
OP1
DT
6
1_555
D
ZN
101
M
ZN
ZN
1_555
metalc
2.576
D
DT
6
D
OP2
DT
6
1_555
D
ZN
101
M
ZN
ZN
1_555
metalc
2.241
D
DG
15
D
N7
DG
15
1_555
D
ZN
102
N
ZN
ZN
1_555
metalc
2.177
D
ZN
101
M
ZN
ZN
1_555
F
HIS
289
F
NE2
HIS
90
1_555
metalc
2.387
E
DG
38
E
N7
DG
18
1_555
E
ZN
101
O
ZN
ZN
1_555
metalc
2.252
F
GLU
203
F
OE1
GLU
4
1_555
F
ZN
404
S
ZN
ZN
1_555
metalc
2.329
F
CYS
204
F
SG
CYS
5
1_555
F
ZN
401
P
ZN
ZN
1_555
metalc
2.088
F
CYS
207
F
SG
CYS
8
1_555
F
ZN
401
P
ZN
ZN
1_555
metalc
2.474
F
ASP
218
F
OD2
ASP
19
1_555
F
ZN
405
T
ZN
ZN
1_555
metalc
2.341
F
HIS
222
F
ND1
HIS
23
1_555
F
ZN
405
T
ZN
ZN
1_555
metalc
2.341
F
CYS
225
F
SG
CYS
26
1_555
F
ZN
401
P
ZN
ZN
1_555
metalc
2.082
F
CYS
228
F
SG
CYS
29
1_555
F
ZN
401
P
ZN
ZN
1_555
metalc
2.051
F
HIS
232
F
NE2
HIS
33
1_555
F
ZN
403
R
ZN
ZN
1_555
metalc
2.340
F
CYS
258
F
SG
CYS
59
1_555
F
ZN
402
Q
ZN
ZN
1_555
metalc
2.085
F
CYS
261
F
SG
CYS
62
1_555
F
ZN
402
Q
ZN
ZN
1_555
metalc
2.345
F
CYS
279
F
SG
CYS
80
1_555
F
ZN
402
Q
ZN
ZN
1_555
metalc
2.394
F
CYS
282
F
SG
CYS
83
1_555
F
ZN
402
Q
ZN
ZN
1_555
hydrog
DG-DC PAIR
A
DG
3
A
N1
DG
3
1_555
B
DC
40
B
O2
DC
20
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
39
B
N1
DA
19
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
39
B
N6
DA
19
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
38
B
N1
DG
18
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
38
B
O6
DG
18
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
38
B
N2
DG
18
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
B
DA
37
B
N1
DA
17
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
B
DA
37
B
N6
DA
17
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
36
B
N1
DA
16
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
36
B
N6
DA
16
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N1
DA
8
1_555
B
DT
35
B
N3
DT
15
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N6
DA
8
1_555
B
DT
35
B
O4
DT
15
1_555
hydrog
WATSON-CRICK
A
DT
9
A
N3
DT
9
1_555
B
DA
34
B
N1
DA
14
1_555
hydrog
WATSON-CRICK
A
DT
9
A
O4
DT
9
1_555
B
DA
34
B
N6
DA
14
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N3
DC
10
1_555
B
DG
33
B
N1
DG
13
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N4
DC
10
1_555
B
DG
33
B
O6
DG
13
1_555
hydrog
WATSON-CRICK
A
DC
10
A
O2
DC
10
1_555
B
DG
33
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
A
DA
11
A
N1
DA
11
1_555
B
DT
32
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
A
DA
11
A
N6
DA
11
1_555
B
DT
32
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
31
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
31
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
31
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DA
13
A
N1
DA
13
1_555
B
DT
30
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
A
DA
13
A
N6
DA
13
1_555
B
DT
30
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
A
DT
14
A
N3
DT
14
1_555
B
DA
29
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
A
DT
14
A
O4
DT
14
1_555
B
DA
29
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
A
DG
15
A
N1
DG
15
1_555
B
DC
28
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
15
A
N2
DG
15
1_555
B
DC
28
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
15
A
O6
DG
15
1_555
B
DC
28
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
16
A
N1
DG
16
1_555
B
DC
27
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
16
A
N2
DG
16
1_555
B
DC
27
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
16
A
O6
DG
16
1_555
B
DC
27
B
N4
DC
7
1_555
hydrog
DA-DT PAIR
A
DA
17
A
N1
DA
17
1_555
B
DT
26
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DC
18
A
N3
DC
18
1_555
B
DG
25
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
18
A
N4
DC
18
1_555
B
DG
25
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
18
A
O2
DC
18
1_555
B
DG
25
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DT
19
A
N3
DT
19
1_555
B
DA
24
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
19
A
O4
DT
19
1_555
B
DA
24
B
N6
DA
4
1_555
hydrog
DC-DG PAIR
A
DC
20
A
O2
DC
20
1_555
B
DG
23
B
N2
DG
3
1_555
hydrog
DG-DC PAIR
D
DG
3
D
N1
DG
3
1_555
E
DC
40
E
O2
DC
20
1_555
hydrog
WATSON-CRICK
D
DT
4
D
N3
DT
4
1_555
E
DA
39
E
N1
DA
19
1_555
hydrog
WATSON-CRICK
D
DT
4
D
O4
DT
4
1_555
E
DA
39
E
N6
DA
19
1_555
hydrog
WATSON-CRICK
D
DC
5
D
N3
DC
5
1_555
E
DG
38
E
N1
DG
18
1_555
hydrog
WATSON-CRICK
D
DC
5
D
N4
DC
5
1_555
E
DG
38
E
O6
DG
18
1_555
hydrog
WATSON-CRICK
D
DC
5
D
O2
DC
5
1_555
E
DG
38
E
N2
DG
18
1_555
hydrog
WATSON-CRICK
D
DT
6
D
N3
DT
6
1_555
E
DA
37
E
N1
DA
17
1_555
hydrog
WATSON-CRICK
D
DT
6
D
O4
DT
6
1_555
E
DA
37
E
N6
DA
17
1_555
hydrog
WATSON-CRICK
D
DT
7
D
N3
DT
7
1_555
E
DA
36
E
N1
DA
16
1_555
hydrog
WATSON-CRICK
D
DT
7
D
O4
DT
7
1_555
E
DA
36
E
N6
DA
16
1_555
hydrog
WATSON-CRICK
D
DA
8
D
N1
DA
8
1_555
E
DT
35
E
N3
DT
15
1_555
hydrog
WATSON-CRICK
D
DA
8
D
N6
DA
8
1_555
E
DT
35
E
O4
DT
15
1_555
hydrog
WATSON-CRICK
D
DT
9
D
N3
DT
9
1_555
E
DA
34
E
N1
DA
14
1_555
hydrog
WATSON-CRICK
D
DT
9
D
O4
DT
9
1_555
E
DA
34
E
N6
DA
14
1_555
hydrog
WATSON-CRICK
D
DC
10
D
N3
DC
10
1_555
E
DG
33
E
N1
DG
13
1_555
hydrog
WATSON-CRICK
D
DC
10
D
N4
DC
10
1_555
E
DG
33
E
O6
DG
13
1_555
hydrog
WATSON-CRICK
D
DC
10
D
O2
DC
10
1_555
E
DG
33
E
N2
DG
13
1_555
hydrog
WATSON-CRICK
D
DA
11
D
N1
DA
11
1_555
E
DT
32
E
N3
DT
12
1_555
hydrog
WATSON-CRICK
D
DA
11
D
N6
DA
11
1_555
E
DT
32
E
O4
DT
12
1_555
hydrog
WATSON-CRICK
D
DG
12
D
N1
DG
12
1_555
E
DC
31
E
N3
DC
11
1_555
hydrog
WATSON-CRICK
D
DG
12
D
N2
DG
12
1_555
E
DC
31
E
O2
DC
11
1_555
hydrog
WATSON-CRICK
D
DG
12
D
O6
DG
12
1_555
E
DC
31
E
N4
DC
11
1_555
hydrog
WATSON-CRICK
D
DA
13
D
N1
DA
13
1_555
E
DT
30
E
N3
DT
10
1_555
hydrog
WATSON-CRICK
D
DA
13
D
N6
DA
13
1_555
E
DT
30
E
O4
DT
10
1_555
hydrog
WATSON-CRICK
D
DT
14
D
N3
DT
14
1_555
E
DA
29
E
N1
DA
9
1_555
hydrog
WATSON-CRICK
D
DT
14
D
O4
DT
14
1_555
E
DA
29
E
N6
DA
9
1_555
hydrog
WATSON-CRICK
D
DG
15
D
N1
DG
15
1_555
E
DC
28
E
N3
DC
8
1_555
hydrog
WATSON-CRICK
D
DG
15
D
N2
DG
15
1_555
E
DC
28
E
O2
DC
8
1_555
hydrog
WATSON-CRICK
D
DG
15
D
O6
DG
15
1_555
E
DC
28
E
N4
DC
8
1_555
hydrog
WATSON-CRICK
D
DG
16
D
N1
DG
16
1_555
E
DC
27
E
N3
DC
7
1_555
hydrog
WATSON-CRICK
D
DG
16
D
N2
DG
16
1_555
E
DC
27
E
O2
DC
7
1_555
hydrog
WATSON-CRICK
D
DG
16
D
O6
DG
16
1_555
E
DC
27
E
N4
DC
7
1_555
hydrog
WATSON-CRICK
D
DA
17
D
N1
DA
17
1_555
E
DT
26
E
N3
DT
6
1_555
hydrog
WATSON-CRICK
D
DA
17
D
N6
DA
17
1_555
E
DT
26
E
O4
DT
6
1_555
hydrog
WATSON-CRICK
D
DC
18
D
N3
DC
18
1_555
E
DG
25
E
N1
DG
5
1_555
hydrog
WATSON-CRICK
D
DC
18
D
N4
DC
18
1_555
E
DG
25
E
O6
DG
5
1_555
hydrog
WATSON-CRICK
D
DC
18
D
O2
DC
18
1_555
E
DG
25
E
N2
DG
5
1_555
hydrog
WATSON-CRICK
D
DT
19
D
N3
DT
19
1_555
E
DA
24
E
N1
DA
4
1_555
hydrog
WATSON-CRICK
D
DT
19
D
O4
DT
19
1_555
E
DA
24
E
N6
DA
4
1_555
hydrog
DC-DG PAIR
D
DC
20
D
O2
DC
20
1_555
E
DG
23
E
N2
DG
3
1_555
TRANSCRIPTION/DNA
PROTEIN-DNA COMPLEX, ZINC FINGER, TRANSCRIPTION FACTOR, DNA BINDING, NUCLEUS, TRANSCRIPTION-DNA complex
C
F
C
F
A
D
B
E
C
ALA
201
C
ALA
2
C
SER
310
C
SER
111
4
F
ALA
201
F
ALA
2
F
SER
310
F
SER
111
4
C
ZN
401
J
ZN
C
ZN
402
K
ZN
4
F
ZN
401
P
ZN
F
ZN
402
Q
ZN
4
A
DT
1
A
DT
1
A
DC
20
A
DC
20
4
D
DT
1
D
DT
1
D
DC
20
D
DC
20
4
B
DA
21
B
DA
1
B
DC
40
B
DC
20
4
E
DA
21
E
DA
1
E
DC
40
E
DC
20
4
3VEK
PDB
1
1
3VEK
TTGTCTTATCAGATGGACTC
3VEK
PDB
2
21
3VEK
AAGAGTCCATCTGATAAGAC
GATA1_MOUSE
UNP
3
200
P17679
EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRMIVSKRAGTQCTNCQTTTTTLWRRNASGDPVC
NACGLYFKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRG
1
20
3VEK
1
20
3VEK
A
1
1
20
21
40
3VEK
21
40
3VEK
B
2
1
20
200
318
3VEK
200
318
P17679
C
3
1
119
1
20
3VEK
1
20
3VEK
D
1
1
20
21
40
3VEK
21
40
3VEK
E
2
1
20
200
318
3VEK
200
318
P17679
F
3
1
119
2
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
C
ARG
216
C
ARG
17
C
ARG
217
C
ARG
18
C
TYR
223
C
TYR
24
C
LEU
224
C
LEU
25
C
ARG
270
C
ARG
71
C
ARG
271
C
ARG
72
C
PRO
277
C
PRO
78
C
VAL
278
C
VAL
79
F
ARG
216
F
ARG
17
F
ARG
217
F
ARG
18
F
TYR
223
F
TYR
24
F
LEU
224
F
LEU
25
F
ARG
270
F
ARG
71
F
ARG
271
F
ARG
72
F
PRO
277
F
PRO
78
F
VAL
278
F
VAL
79
BINDING SITE FOR RESIDUE ZN A 101
A
ZN
101
Software
4
BINDING SITE FOR RESIDUE ZN A 102
A
ZN
102
Software
1
BINDING SITE FOR RESIDUE ZN B 101
B
ZN
101
Software
1
BINDING SITE FOR RESIDUE ZN C 401
C
ZN
401
Software
4
BINDING SITE FOR RESIDUE ZN C 402
C
ZN
402
Software
4
BINDING SITE FOR RESIDUE ZN C 403
C
ZN
403
Software
3
BINDING SITE FOR RESIDUE ZN D 101
D
ZN
101
Software
3
BINDING SITE FOR RESIDUE ZN D 102
D
ZN
102
Software
1
BINDING SITE FOR RESIDUE ZN E 101
E
ZN
101
Software
1
BINDING SITE FOR RESIDUE ZN F 401
F
ZN
401
Software
4
BINDING SITE FOR RESIDUE ZN F 402
F
ZN
402
Software
4
BINDING SITE FOR RESIDUE ZN F 403
F
ZN
403
Software
2
BINDING SITE FOR RESIDUE ZN F 404
F
ZN
404
Software
2
BINDING SITE FOR RESIDUE ZN F 405
F
ZN
405
Software
3
A
DC
5
A
DC
5
4
1_555
A
DT
6
A
DT
6
4
1_555
C
HIS
289
C
HIS
90
4
1_555
F
ASP
300
F
ASP
101
4
1_654
A
DG
15
A
DG
15
1
1_555
B
DG
38
B
DG
18
1
1_555
C
CYS
204
C
CYS
5
4
1_555
C
CYS
207
C
CYS
8
4
1_555
C
CYS
225
C
CYS
26
4
1_555
C
CYS
228
C
CYS
29
4
1_555
C
CYS
258
C
CYS
59
4
1_555
C
CYS
261
C
CYS
62
4
1_555
C
CYS
279
C
CYS
80
4
1_555
C
CYS
282
C
CYS
83
4
1_555
C
ASP
218
C
ASP
19
3
1_555
C
THR
220
C
THR
21
3
1_555
C
HIS
222
C
HIS
23
3
1_555
C
ASP
300
C
ASP
101
3
1_556
D
DT
6
D
DT
6
3
1_555
F
HIS
289
F
HIS
90
3
1_555
D
DG
15
D
DG
15
1
1_555
E
DG
38
E
DG
18
1
1_555
F
CYS
204
F
CYS
5
4
1_555
F
CYS
207
F
CYS
8
4
1_555
F
CYS
225
F
CYS
26
4
1_555
F
CYS
228
F
CYS
29
4
1_555
F
CYS
258
F
CYS
59
4
1_555
F
CYS
261
F
CYS
62
4
1_555
F
CYS
279
F
CYS
80
4
1_555
F
CYS
282
F
CYS
83
4
1_555
C
GLU
203
C
GLU
4
2
1_565
F
HIS
232
F
HIS
33
2
1_555
C
HIS
232
C
HIS
33
2
1_465
F
GLU
203
F
GLU
4
2
1_555
F
ASP
218
F
ASP
19
3
1_555
F
THR
220
F
THR
21
3
1_555
F
HIS
222
F
HIS
23
3
1_555
1
P 1