0.024802
0.000000
0.000000
0.000000
0.008090
0.000000
0.000000
0.000000
0.006380
0.00000
0.00000
0.00000
Economou, N.J.
Weeks, S.D.
Grasty, K.C.
Loll, P.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
40.320
123.610
156.740
C8 H9 N O4
183.161
(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid
L-peptide linking
C9 H10 Cl N O3
215.634
n
3-chloro-D-tyrosine
D-peptide linking
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 As O2 -1
136.989
CACODYLATE ION
dimethylarsinate
non-polymer
C5 H9 N O4 S
179.194
n
CARBOXYMETHYLATED CYSTEINE
L-peptide linking
C3 H7 N O2
89.093
D-ALANINE
D-peptide linking
C6 H13 N O5
179.171
2-amino-2-deoxy-beta-D-glucopyranose
2-AMINO-2-DEOXY-D-GLUCOSE
D-saccharide, beta linking
C8 H9 N O3
167.162
(2R)-amino(4-hydroxyphenyl)ethanoic acid
D-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O4
197.188
n
(betaR)-beta-hydroxy-L-Tyrosine
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C10 H20 O2
172.265
8-METHYLNONANOIC ACID
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
69
520
533
10.1107/S0907444912050469
23519660
Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach.
2013
93
1
CCD
2009-04-10
ADSC QUANTUM 315
Si(111)side bounce monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
24-ID-E
APS
0.9792
SYNCHROTRON
APS BEAMLINE 24-ID-E
41342.777
Maltose-binding periplasmic protein, C-terminal fused by Cys-Lys-D-Ala-D-Ala
1
man
polymer
1172.539
MonodeChloro- Teicoplanin A2-2
1
nat
polymer
65.409
ZINC ION
8
syn
non-polymer
59.044
ACETATE ION
2
syn
non-polymer
136.989
CACODYLATE ION
2
syn
non-polymer
179.171
2-amino-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
172.265
8-METHYLNONANOIC ACID
1
syn
non-polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
180.156
alpha-D-mannopyranose
1
man
non-polymer
18.015
water
155
nat
water
MBP, MMBP, Maltodextrin-binding protein
no
yes
MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEI
TPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP
LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSK
VNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAA
TMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNAAAAAG(CCS)K(DAL)(DAL)
MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEI
TPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP
LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSK
VNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAA
TMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNAAAAAGCKAA
A
polypeptide(L)
no
yes
(GHP)(3MY)(3FG)(GHP)(GHP)(OMX)(3FG)
GYXGGYX
G
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
four C-terminal amino acids added non-recombinantly with native chemical ligation
K12
sample
malE, b4034, JW3994
83333
Escherichia coli
562
Escherichia coli
sample
1867
Actinoplanes teichomyceticus
1
2.30
46.43
VAPOR DIFFUSION, HANGING DROP
6.5
0.2 M zinc acetate, 0.1 M sodium cacodylate 6.5, 16% PEG8000, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
chem_comp
entity
entity_poly
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Structure summary
Structure summary
Derived calculations
Derived calculations
Database references
Structure summary
Data collection
Database references
Derived calculations
Polymer sequence
Structure summary
1
0
2013-01-09
1
1
2013-03-06
1
2
2013-03-13
1
3
2013-03-27
1
4
2013-04-03
1
5
2013-06-19
1
6
2014-12-10
2
0
2020-07-29
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_entity_nonpoly.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
DGlcpNb
b-D-glucopyranosamine
b-D-GlcpN
GlcN
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Native MBP structure used for molecular replacement
same crystallographic strategy: vancomycin bound to a T4 lysozyme-substrate fusion
same crystallographic strategy: dalbavancin bound to the same ubiquitin fusion
same crystallographic strategy: ristocetin bound to a MBP-substrate fusion
The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as a ligand carrier
RCSB
Y
RCSB
2012-01-09
REL
REL
ZN
ZINC ION
ACT
ACETATE ION
CAC
CACODYLATE ION
GCS
2-amino-2-deoxy-beta-D-glucopyranose
T55
8-METHYLNONANOIC ACID
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
MAN
alpha-D-mannopyranose
HOH
water
AUTHORS STATED THE FOLLOWING: THE STARTING MATERIAL HAD TEICOPLANIN A2-2 THAT CONTAINED TWO CHLORINE ATOMS. THE ACTUAL CRYSTALS CONTAINED BOTH CHLORINE ATOMS BEFORE THEY WERE EXPOSED TO X-RAYS. ONE CHLORINE WAS REMOVED FROM TEICOPLANIN BY X-IRRADIATION DAMAGE EARLY IN THE DIFFRACTION EXPERIMENT
TEICOPLANIN IS A FAMILY OF TETRACYCLIC GLYCOPEPTIDE ANTIBIOTICS. THE SCAFFOLD IS A HEPTAPEPTIDE FURTHER GLYCOSYLATED BY THREE MONO SACCHARIDES: MANNOSE, N-ACETYLGLUCOSAMINE AND BETA-D-GLUCOSAMINE AND ONLY DIFFER BY THE SIDE CHAIN ATTACHED TO THE LATTER. TEICOPLANIN A2-2 HAS 8-METHYLNONANOIC ACID ATTACHED TO GLUCOSAMINE. HERE, TEICOPLANIN A2-2 WAS UNDER RADIATION DAMAGE, WHICH CAUSES THE LOSS OF ONE CHLORINE ATOM.
C-TERMINAL FUSED BY LINKER AND MODIFIED CYS-LYS-D-ALA-D-ALA
Antibiotic
MonodeChloro- Teicoplanin A2-2
Glycopeptide
ZN
1
3
ZN
ZN
401
A
ZN
2
3
ZN
ZN
402
A
ZN
3
3
ZN
ZN
403
A
ZN
4
3
ZN
ZN
404
A
ZN
5
3
ZN
ZN
405
A
ZN
6
3
ZN
ZN
406
A
ZN
7
3
ZN
ZN
407
A
ZN
8
3
ZN
ZN
408
A
ACT
1
4
ACT
ACT
409
A
ACT
2
4
ACT
ACT
410
A
CAC
1
5
CAC
CAC
411
A
GCS
8
6
GCS
GCS
8
G
T55
9
7
T55
T55
9
G
NAG
10
8
NAG
NAG
10
G
MAN
11
9
MAN
MAN
11
G
CAC
2
5
CAC
CAC
104
G
HOH
1
10
HOH
HOH
501
A
HOH
2
10
HOH
HOH
502
A
HOH
3
10
HOH
HOH
503
A
HOH
4
10
HOH
HOH
504
A
HOH
5
10
HOH
HOH
505
A
HOH
6
10
HOH
HOH
506
A
HOH
7
10
HOH
HOH
507
A
HOH
8
10
HOH
HOH
508
A
HOH
9
10
HOH
HOH
509
A
HOH
10
10
HOH
HOH
510
A
HOH
11
10
HOH
HOH
511
A
HOH
12
10
HOH
HOH
512
A
HOH
13
10
HOH
HOH
513
A
HOH
14
10
HOH
HOH
514
A
HOH
15
10
HOH
HOH
515
A
HOH
16
10
HOH
HOH
516
A
HOH
17
10
HOH
HOH
517
A
HOH
18
10
HOH
HOH
518
A
HOH
19
10
HOH
HOH
519
A
HOH
20
10
HOH
HOH
520
A
HOH
21
10
HOH
HOH
521
A
HOH
22
10
HOH
HOH
522
A
HOH
23
10
HOH
HOH
523
A
HOH
24
10
HOH
HOH
524
A
HOH
25
10
HOH
HOH
525
A
HOH
26
10
HOH
HOH
526
A
HOH
27
10
HOH
HOH
527
A
HOH
28
10
HOH
HOH
528
A
HOH
29
10
HOH
HOH
529
A
HOH
30
10
HOH
HOH
530
A
HOH
31
10
HOH
HOH
531
A
HOH
32
10
HOH
HOH
532
A
HOH
33
10
HOH
HOH
533
A
HOH
34
10
HOH
HOH
534
A
HOH
35
10
HOH
HOH
535
A
HOH
36
10
HOH
HOH
536
A
HOH
37
10
HOH
HOH
537
A
HOH
38
10
HOH
HOH
538
A
HOH
39
10
HOH
HOH
539
A
HOH
40
10
HOH
HOH
540
A
HOH
41
10
HOH
HOH
541
A
HOH
42
10
HOH
HOH
542
A
HOH
43
10
HOH
HOH
543
A
HOH
44
10
HOH
HOH
544
A
HOH
45
10
HOH
HOH
545
A
HOH
46
10
HOH
HOH
546
A
HOH
47
10
HOH
HOH
547
A
HOH
48
10
HOH
HOH
548
A
HOH
49
10
HOH
HOH
549
A
HOH
50
10
HOH
HOH
550
A
HOH
51
10
HOH
HOH
551
A
HOH
52
10
HOH
HOH
552
A
HOH
53
10
HOH
HOH
553
A
HOH
54
10
HOH
HOH
554
A
HOH
55
10
HOH
HOH
555
A
HOH
56
10
HOH
HOH
556
A
HOH
57
10
HOH
HOH
557
A
HOH
58
10
HOH
HOH
558
A
HOH
59
10
HOH
HOH
559
A
HOH
60
10
HOH
HOH
560
A
HOH
61
10
HOH
HOH
561
A
HOH
62
10
HOH
HOH
562
A
HOH
64
10
HOH
HOH
563
A
HOH
65
10
HOH
HOH
564
A
HOH
66
10
HOH
HOH
565
A
HOH
67
10
HOH
HOH
566
A
HOH
68
10
HOH
HOH
567
A
HOH
69
10
HOH
HOH
568
A
HOH
71
10
HOH
HOH
569
A
HOH
72
10
HOH
HOH
570
A
HOH
73
10
HOH
HOH
571
A
HOH
74
10
HOH
HOH
572
A
HOH
76
10
HOH
HOH
573
A
HOH
78
10
HOH
HOH
574
A
HOH
79
10
HOH
HOH
575
A
HOH
80
10
HOH
HOH
576
A
HOH
81
10
HOH
HOH
577
A
HOH
82
10
HOH
HOH
578
A
HOH
83
10
HOH
HOH
579
A
HOH
84
10
HOH
HOH
580
A
HOH
85
10
HOH
HOH
581
A
HOH
86
10
HOH
HOH
582
A
HOH
87
10
HOH
HOH
583
A
HOH
88
10
HOH
HOH
584
A
HOH
89
10
HOH
HOH
585
A
HOH
90
10
HOH
HOH
586
A
HOH
91
10
HOH
HOH
587
A
HOH
92
10
HOH
HOH
588
A
HOH
93
10
HOH
HOH
589
A
HOH
94
10
HOH
HOH
590
A
HOH
95
10
HOH
HOH
591
A
HOH
96
10
HOH
HOH
592
A
HOH
97
10
HOH
HOH
593
A
HOH
98
10
HOH
HOH
594
A
HOH
99
10
HOH
HOH
595
A
HOH
100
10
HOH
HOH
596
A
HOH
101
10
HOH
HOH
597
A
HOH
102
10
HOH
HOH
598
A
HOH
103
10
HOH
HOH
599
A
HOH
104
10
HOH
HOH
600
A
HOH
105
10
HOH
HOH
601
A
HOH
106
10
HOH
HOH
602
A
HOH
107
10
HOH
HOH
603
A
HOH
108
10
HOH
HOH
604
A
HOH
109
10
HOH
HOH
605
A
HOH
110
10
HOH
HOH
606
A
HOH
111
10
HOH
HOH
607
A
HOH
112
10
HOH
HOH
608
A
HOH
113
10
HOH
HOH
609
A
HOH
114
10
HOH
HOH
610
A
HOH
115
10
HOH
HOH
611
A
HOH
116
10
HOH
HOH
612
A
HOH
117
10
HOH
HOH
613
A
HOH
118
10
HOH
HOH
614
A
HOH
119
10
HOH
HOH
615
A
HOH
120
10
HOH
HOH
616
A
HOH
121
10
HOH
HOH
617
A
HOH
122
10
HOH
HOH
618
A
HOH
123
10
HOH
HOH
619
A
HOH
124
10
HOH
HOH
620
A
HOH
125
10
HOH
HOH
621
A
HOH
126
10
HOH
HOH
622
A
HOH
127
10
HOH
HOH
623
A
HOH
128
10
HOH
HOH
624
A
HOH
129
10
HOH
HOH
625
A
HOH
130
10
HOH
HOH
626
A
HOH
131
10
HOH
HOH
627
A
HOH
132
10
HOH
HOH
628
A
HOH
133
10
HOH
HOH
629
A
HOH
134
10
HOH
HOH
630
A
HOH
135
10
HOH
HOH
631
A
HOH
136
10
HOH
HOH
632
A
HOH
137
10
HOH
HOH
633
A
HOH
138
10
HOH
HOH
634
A
HOH
139
10
HOH
HOH
635
A
HOH
140
10
HOH
HOH
636
A
HOH
141
10
HOH
HOH
637
A
HOH
142
10
HOH
HOH
638
A
HOH
143
10
HOH
HOH
639
A
HOH
144
10
HOH
HOH
640
A
HOH
145
10
HOH
HOH
641
A
HOH
146
10
HOH
HOH
642
A
HOH
147
10
HOH
HOH
643
A
HOH
148
10
HOH
HOH
644
A
HOH
149
10
HOH
HOH
645
A
HOH
151
10
HOH
HOH
646
A
HOH
152
10
HOH
HOH
647
A
HOH
153
10
HOH
HOH
648
A
HOH
154
10
HOH
HOH
649
A
HOH
155
10
HOH
HOH
650
A
HOH
63
10
HOH
HOH
201
G
HOH
70
10
HOH
HOH
202
G
HOH
75
10
HOH
HOH
203
G
HOH
77
10
HOH
HOH
204
G
HOH
150
10
HOH
HOH
205
G
n
1
0
A
LYS
1
n
2
LYS
1
A
ILE
2
n
3
ILE
2
A
GLU
3
n
4
GLU
3
A
GLU
4
n
5
GLU
4
A
GLY
5
n
6
GLY
5
A
LYS
6
n
7
LYS
6
A
LEU
7
n
8
LEU
7
A
VAL
8
n
9
VAL
8
A
ILE
9
n
10
ILE
9
A
TRP
10
n
11
TRP
10
A
ILE
11
n
12
ILE
11
A
ASN
12
n
13
ASN
12
A
GLY
13
n
14
GLY
13
A
ASP
14
n
15
ASP
14
A
LYS
15
n
16
LYS
15
A
GLY
16
n
17
GLY
16
A
TYR
17
n
18
TYR
17
A
ASN
18
n
19
ASN
18
A
GLY
19
n
20
GLY
19
A
LEU
20
n
21
LEU
20
A
ALA
21
n
22
ALA
21
A
GLU
22
n
23
GLU
22
A
VAL
23
n
24
VAL
23
A
GLY
24
n
25
GLY
24
A
LYS
25
n
26
LYS
25
A
LYS
26
n
27
LYS
26
A
PHE
27
n
28
PHE
27
A
GLU
28
n
29
GLU
28
A
LYS
29
n
30
LYS
29
A
ASP
30
n
31
ASP
30
A
THR
31
n
32
THR
31
A
GLY
32
n
33
GLY
32
A
ILE
33
n
34
ILE
33
A
LYS
34
n
35
LYS
34
A
VAL
35
n
36
VAL
35
A
THR
36
n
37
THR
36
A
VAL
37
n
38
VAL
37
A
GLU
38
n
39
GLU
38
A
HIS
39
n
40
HIS
39
A
PRO
40
n
41
PRO
40
A
ASP
41
n
42
ASP
41
A
LYS
42
n
43
LYS
42
A
LEU
43
n
44
LEU
43
A
GLU
44
n
45
GLU
44
A
GLU
45
n
46
GLU
45
A
LYS
46
n
47
LYS
46
A
PHE
47
n
48
PHE
47
A
PRO
48
n
49
PRO
48
A
GLN
49
n
50
GLN
49
A
VAL
50
n
51
VAL
50
A
ALA
51
n
52
ALA
51
A
ALA
52
n
53
ALA
52
A
THR
53
n
54
THR
53
A
GLY
54
n
55
GLY
54
A
ASP
55
n
56
ASP
55
A
GLY
56
n
57
GLY
56
A
PRO
57
n
58
PRO
57
A
ASP
58
n
59
ASP
58
A
ILE
59
n
60
ILE
59
A
ILE
60
n
61
ILE
60
A
PHE
61
n
62
PHE
61
A
TRP
62
n
63
TRP
62
A
ALA
63
n
64
ALA
63
A
HIS
64
n
65
HIS
64
A
ASP
65
n
66
ASP
65
A
ARG
66
n
67
ARG
66
A
PHE
67
n
68
PHE
67
A
GLY
68
n
69
GLY
68
A
GLY
69
n
70
GLY
69
A
TYR
70
n
71
TYR
70
A
ALA
71
n
72
ALA
71
A
GLN
72
n
73
GLN
72
A
SER
73
n
74
SER
73
A
GLY
74
n
75
GLY
74
A
LEU
75
n
76
LEU
75
A
LEU
76
n
77
LEU
76
A
ALA
77
n
78
ALA
77
A
GLU
78
n
79
GLU
78
A
ILE
79
n
80
ILE
79
A
THR
80
n
81
THR
80
A
PRO
81
n
82
PRO
81
A
ASP
82
n
83
ASP
82
A
LYS
83
n
84
LYS
83
A
ALA
84
n
85
ALA
84
A
PHE
85
n
86
PHE
85
A
GLN
86
n
87
GLN
86
A
ASP
87
n
88
ASP
87
A
LYS
88
n
89
LYS
88
A
LEU
89
n
90
LEU
89
A
TYR
90
n
91
TYR
90
A
PRO
91
n
92
PRO
91
A
PHE
92
n
93
PHE
92
A
THR
93
n
94
THR
93
A
TRP
94
n
95
TRP
94
A
ASP
95
n
96
ASP
95
A
ALA
96
n
97
ALA
96
A
VAL
97
n
98
VAL
97
A
ARG
98
n
99
ARG
98
A
TYR
99
n
100
TYR
99
A
ASN
100
n
101
ASN
100
A
GLY
101
n
102
GLY
101
A
LYS
102
n
103
LYS
102
A
LEU
103
n
104
LEU
103
A
ILE
104
n
105
ILE
104
A
ALA
105
n
106
ALA
105
A
TYR
106
n
107
TYR
106
A
PRO
107
n
108
PRO
107
A
ILE
108
n
109
ILE
108
A
ALA
109
n
110
ALA
109
A
VAL
110
n
111
VAL
110
A
GLU
111
n
112
GLU
111
A
ALA
112
n
113
ALA
112
A
LEU
113
n
114
LEU
113
A
SER
114
n
115
SER
114
A
LEU
115
n
116
LEU
115
A
ILE
116
n
117
ILE
116
A
TYR
117
n
118
TYR
117
A
ASN
118
n
119
ASN
118
A
LYS
119
n
120
LYS
119
A
ASP
120
n
121
ASP
120
A
LEU
121
n
122
LEU
121
A
LEU
122
n
123
LEU
122
A
PRO
123
n
124
PRO
123
A
ASN
124
n
125
ASN
124
A
PRO
125
n
126
PRO
125
A
PRO
126
n
127
PRO
126
A
LYS
127
n
128
LYS
127
A
THR
128
n
129
THR
128
A
TRP
129
n
130
TRP
129
A
GLU
130
n
131
GLU
130
A
GLU
131
n
132
GLU
131
A
ILE
132
n
133
ILE
132
A
PRO
133
n
134
PRO
133
A
ALA
134
n
135
ALA
134
A
LEU
135
n
136
LEU
135
A
ASP
136
n
137
ASP
136
A
LYS
137
n
138
LYS
137
A
GLU
138
n
139
GLU
138
A
LEU
139
n
140
LEU
139
A
LYS
140
n
141
LYS
140
A
ALA
141
n
142
ALA
141
A
LYS
142
n
143
LYS
142
A
GLY
143
n
144
GLY
143
A
LYS
144
n
145
LYS
144
A
SER
145
n
146
SER
145
A
ALA
146
n
147
ALA
146
A
LEU
147
n
148
LEU
147
A
MET
148
n
149
MET
148
A
PHE
149
n
150
PHE
149
A
ASN
150
n
151
ASN
150
A
LEU
151
n
152
LEU
151
A
GLN
152
n
153
GLN
152
A
GLU
153
n
154
GLU
153
A
PRO
154
n
155
PRO
154
A
TYR
155
n
156
TYR
155
A
PHE
156
n
157
PHE
156
A
THR
157
n
158
THR
157
A
TRP
158
n
159
TRP
158
A
PRO
159
n
160
PRO
159
A
LEU
160
n
161
LEU
160
A
ILE
161
n
162
ILE
161
A
ALA
162
n
163
ALA
162
A
ALA
163
n
164
ALA
163
A
ASP
164
n
165
ASP
164
A
GLY
165
n
166
GLY
165
A
GLY
166
n
167
GLY
166
A
TYR
167
n
168
TYR
167
A
ALA
168
n
169
ALA
168
A
PHE
169
n
170
PHE
169
A
LYS
170
n
171
LYS
170
A
TYR
171
n
172
TYR
171
A
GLU
172
n
173
GLU
172
A
ASN
173
n
174
ASN
173
A
GLY
174
n
175
GLY
174
A
LYS
175
n
176
LYS
175
A
TYR
176
n
177
TYR
176
A
ASP
177
n
178
ASP
177
A
ILE
178
n
179
ILE
178
A
LYS
179
n
180
LYS
179
A
ASP
180
n
181
ASP
180
A
VAL
181
n
182
VAL
181
A
GLY
182
n
183
GLY
182
A
VAL
183
n
184
VAL
183
A
ASP
184
n
185
ASP
184
A
ASN
185
n
186
ASN
185
A
ALA
186
n
187
ALA
186
A
GLY
187
n
188
GLY
187
A
ALA
188
n
189
ALA
188
A
LYS
189
n
190
LYS
189
A
ALA
190
n
191
ALA
190
A
GLY
191
n
192
GLY
191
A
LEU
192
n
193
LEU
192
A
THR
193
n
194
THR
193
A
PHE
194
n
195
PHE
194
A
LEU
195
n
196
LEU
195
A
VAL
196
n
197
VAL
196
A
ASP
197
n
198
ASP
197
A
LEU
198
n
199
LEU
198
A
ILE
199
n
200
ILE
199
A
LYS
200
n
201
LYS
200
A
ASN
201
n
202
ASN
201
A
LYS
202
n
203
LYS
202
A
HIS
203
n
204
HIS
203
A
MET
204
n
205
MET
204
A
ASN
205
n
206
ASN
205
A
ALA
206
n
207
ALA
206
A
ASP
207
n
208
ASP
207
A
THR
208
n
209
THR
208
A
ASP
209
n
210
ASP
209
A
TYR
210
n
211
TYR
210
A
SER
211
n
212
SER
211
A
ILE
212
n
213
ILE
212
A
ALA
213
n
214
ALA
213
A
GLU
214
n
215
GLU
214
A
ALA
215
n
216
ALA
215
A
ALA
216
n
217
ALA
216
A
PHE
217
n
218
PHE
217
A
ASN
218
n
219
ASN
218
A
LYS
219
n
220
LYS
219
A
GLY
220
n
221
GLY
220
A
GLU
221
n
222
GLU
221
A
THR
222
n
223
THR
222
A
ALA
223
n
224
ALA
223
A
MET
224
n
225
MET
224
A
THR
225
n
226
THR
225
A
ILE
226
n
227
ILE
226
A
ASN
227
n
228
ASN
227
A
GLY
228
n
229
GLY
228
A
PRO
229
n
230
PRO
229
A
TRP
230
n
231
TRP
230
A
ALA
231
n
232
ALA
231
A
TRP
232
n
233
TRP
232
A
SER
233
n
234
SER
233
A
ASN
234
n
235
ASN
234
A
ILE
235
n
236
ILE
235
A
ASP
236
n
237
ASP
236
A
THR
237
n
238
THR
237
A
SER
238
n
239
SER
238
A
LYS
239
n
240
LYS
239
A
VAL
240
n
241
VAL
240
A
ASN
241
n
242
ASN
241
A
TYR
242
n
243
TYR
242
A
GLY
243
n
244
GLY
243
A
VAL
244
n
245
VAL
244
A
THR
245
n
246
THR
245
A
VAL
246
n
247
VAL
246
A
LEU
247
n
248
LEU
247
A
PRO
248
n
249
PRO
248
A
THR
249
n
250
THR
249
A
PHE
250
n
251
PHE
250
A
LYS
251
n
252
LYS
251
A
GLY
252
n
253
GLY
252
A
GLN
253
n
254
GLN
253
A
PRO
254
n
255
PRO
254
A
SER
255
n
256
SER
255
A
LYS
256
n
257
LYS
256
A
PRO
257
n
258
PRO
257
A
PHE
258
n
259
PHE
258
A
VAL
259
n
260
VAL
259
A
GLY
260
n
261
GLY
260
A
VAL
261
n
262
VAL
261
A
LEU
262
n
263
LEU
262
A
SER
263
n
264
SER
263
A
ALA
264
n
265
ALA
264
A
GLY
265
n
266
GLY
265
A
ILE
266
n
267
ILE
266
A
ASN
267
n
268
ASN
267
A
ALA
268
n
269
ALA
268
A
ALA
269
n
270
ALA
269
A
SER
270
n
271
SER
270
A
PRO
271
n
272
PRO
271
A
ASN
272
n
273
ASN
272
A
LYS
273
n
274
LYS
273
A
GLU
274
n
275
GLU
274
A
LEU
275
n
276
LEU
275
A
ALA
276
n
277
ALA
276
A
LYS
277
n
278
LYS
277
A
GLU
278
n
279
GLU
278
A
PHE
279
n
280
PHE
279
A
LEU
280
n
281
LEU
280
A
GLU
281
n
282
GLU
281
A
ASN
282
n
283
ASN
282
A
TYR
283
n
284
TYR
283
A
LEU
284
n
285
LEU
284
A
LEU
285
n
286
LEU
285
A
THR
286
n
287
THR
286
A
ASP
287
n
288
ASP
287
A
GLU
288
n
289
GLU
288
A
GLY
289
n
290
GLY
289
A
LEU
290
n
291
LEU
290
A
GLU
291
n
292
GLU
291
A
ALA
292
n
293
ALA
292
A
VAL
293
n
294
VAL
293
A
ASN
294
n
295
ASN
294
A
LYS
295
n
296
LYS
295
A
ASP
296
n
297
ASP
296
A
LYS
297
n
298
LYS
297
A
PRO
298
n
299
PRO
298
A
LEU
299
n
300
LEU
299
A
GLY
300
n
301
GLY
300
A
ALA
301
n
302
ALA
301
A
VAL
302
n
303
VAL
302
A
ALA
303
n
304
ALA
303
A
LEU
304
n
305
LEU
304
A
LYS
305
n
306
LYS
305
A
SER
306
n
307
SER
306
A
TYR
307
n
308
TYR
307
A
GLU
308
n
309
GLU
308
A
GLU
309
n
310
GLU
309
A
GLU
310
n
311
GLU
310
A
LEU
311
n
312
LEU
311
A
ALA
312
n
313
ALA
312
A
LYS
313
n
314
LYS
313
A
ASP
314
n
315
ASP
314
A
PRO
315
n
316
PRO
315
A
ARG
316
n
317
ARG
316
A
ILE
317
n
318
ILE
317
A
ALA
318
n
319
ALA
318
A
ALA
319
n
320
ALA
319
A
THR
320
n
321
THR
320
A
MET
321
n
322
MET
321
A
GLU
322
n
323
GLU
322
A
ASN
323
n
324
ASN
323
A
ALA
324
n
325
ALA
324
A
GLN
325
n
326
GLN
325
A
LYS
326
n
327
LYS
326
A
GLY
327
n
328
GLY
327
A
GLU
328
n
329
GLU
328
A
ILE
329
n
330
ILE
329
A
MET
330
n
331
MET
330
A
PRO
331
n
332
PRO
331
A
ASN
332
n
333
ASN
332
A
ILE
333
n
334
ILE
333
A
PRO
334
n
335
PRO
334
A
GLN
335
n
336
GLN
335
A
MET
336
n
337
MET
336
A
SER
337
n
338
SER
337
A
ALA
338
n
339
ALA
338
A
PHE
339
n
340
PHE
339
A
TRP
340
n
341
TRP
340
A
TYR
341
n
342
TYR
341
A
ALA
342
n
343
ALA
342
A
VAL
343
n
344
VAL
343
A
ARG
344
n
345
ARG
344
A
THR
345
n
346
THR
345
A
ALA
346
n
347
ALA
346
A
VAL
347
n
348
VAL
347
A
ILE
348
n
349
ILE
348
A
ASN
349
n
350
ASN
349
A
ALA
350
n
351
ALA
350
A
ALA
351
n
352
ALA
351
A
SER
352
n
353
SER
352
A
GLY
353
n
354
GLY
353
A
ARG
354
n
355
ARG
354
A
GLN
355
n
356
GLN
355
A
THR
356
n
357
THR
356
A
VAL
357
n
358
VAL
357
A
ASP
358
n
359
ASP
358
A
GLU
359
n
360
GLU
359
A
ALA
360
n
361
ALA
360
A
LEU
361
n
362
LEU
361
A
LYS
362
n
363
LYS
362
A
ASP
363
n
364
ASP
363
A
ALA
364
n
365
ALA
364
A
GLN
365
n
366
GLN
365
A
THR
366
n
367
THR
366
A
ASN
367
n
368
ASN
367
A
ALA
368
n
369
ALA
368
A
ALA
369
n
370
ALA
369
A
ALA
370
n
371
ALA
370
A
ALA
371
n
372
ALA
371
A
ALA
372
n
373
ALA
372
A
GLY
373
n
374
GLY
373
A
CCS
374
n
375
CCS
374
A
LYS
375
n
376
LYS
375
A
DAL
376
n
377
DAL
376
A
DAL
377
n
378
DAL
377
A
GHP
1
n
1
GHP
1
G
3MY
2
n
2
3MY
2
G
3FG
3
n
3
3FG
3
G
GHP
4
n
4
GHP
4
G
GHP
5
n
5
GHP
5
G
OMX
6
n
6
OMX
6
G
3FG
7
n
7
3FG
7
G
author_and_software_defined_assembly
PISA
2
dimeric
2930
-154
16900
A
HIS
39
A
ND1
HIS
40
1_555
A
ZN
407
I
ZN
ZN
1_555
A
HIS
39
A
O
HIS
40
1_555
84.5
A
HIS
39
A
ND1
HIS
40
1_555
A
ZN
407
I
ZN
ZN
1_555
A
HOH
594
S
O
HOH
1_555
100.4
A
HIS
39
A
O
HIS
40
1_555
A
ZN
407
I
ZN
ZN
1_555
A
HOH
594
S
O
HOH
1_555
82.9
A
ASP
65
A
OD2
ASP
66
1_555
A
ZN
402
D
ZN
ZN
1_555
A
ASP
65
A
OD1
ASP
66
1_555
52.9
A
ASP
65
A
OD2
ASP
66
1_555
A
ZN
402
D
ZN
ZN
1_555
A
HOH
547
S
O
HOH
1_555
87.3
A
ASP
65
A
OD1
ASP
66
1_555
A
ZN
402
D
ZN
ZN
1_555
A
HOH
547
S
O
HOH
1_555
137.3
A
GLU
111
A
OE2
GLU
112
1_555
A
ZN
401
C
ZN
ZN
1_555
A
ACT
410
L
OXT
ACT
1_555
119.6
A
GLU
172
A
OE1
GLU
173
1_555
A
ZN
405
G
ZN
ZN
1_555
A
ASP
177
A
OD2
ASP
178
1_555
124.4
A
GLU
172
A
OE1
GLU
173
1_555
A
ZN
405
G
ZN
ZN
1_555
A
HOH
614
S
O
HOH
1_555
107.3
A
ASP
177
A
OD2
ASP
178
1_555
A
ZN
405
G
ZN
ZN
1_555
A
HOH
614
S
O
HOH
1_555
92.9
A
HIS
203
A
NE2
HIS
204
1_555
A
ZN
406
H
ZN
ZN
1_555
A
HOH
533
S
O
HOH
1_555
92.7
A
HIS
203
A
NE2
HIS
204
1_555
A
ZN
406
H
ZN
ZN
1_555
A
HOH
615
S
O
HOH
1_555
125.9
A
HOH
533
S
O
HOH
1_555
A
ZN
406
H
ZN
ZN
1_555
A
HOH
615
S
O
HOH
1_555
98.6
A
GLU
288
A
OE2
GLU
289
1_555
A
ZN
403
E
ZN
ZN
1_555
A
GLU
288
A
OE1
GLU
289
1_555
53.2
A
GLU
288
A
OE2
GLU
289
1_555
A
ZN
403
E
ZN
ZN
1_555
A
GLU
291
A
OE1
GLU
292
1_555
99.8
A
GLU
288
A
OE1
GLU
289
1_555
A
ZN
403
E
ZN
ZN
1_555
A
GLU
291
A
OE1
GLU
292
1_555
81.1
A
GLU
359
A
OE1
GLU
360
1_555
A
ZN
404
F
ZN
ZN
1_555
A
ASP
363
A
OD1
ASP
364
1_555
103.4
A
GLU
359
A
OE1
GLU
360
1_555
A
ZN
404
F
ZN
ZN
1_555
A
ASP
363
A
OD2
ASP
364
1_555
128.8
A
ASP
363
A
OD1
ASP
364
1_555
A
ZN
404
F
ZN
ZN
1_555
A
ASP
363
A
OD2
ASP
364
1_555
49.7
A
GLU
359
A
OE1
GLU
360
1_555
A
ZN
404
F
ZN
ZN
1_555
A
HOH
621
S
O
HOH
1_555
143.2
A
ASP
363
A
OD1
ASP
364
1_555
A
ZN
404
F
ZN
ZN
1_555
A
HOH
621
S
O
HOH
1_555
104.4
A
ASP
363
A
OD2
ASP
364
1_555
A
ZN
404
F
ZN
ZN
1_555
A
HOH
621
S
O
HOH
1_555
59.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
38
A
O
GLU
39
A
N
ILE
9
A
N
ILE
10
A
N
TRP
10
A
N
TRP
11
A
O
ILE
59
A
O
ILE
60
A
N
ILE
60
A
N
ILE
61
A
O
GLY
265
A
O
GLY
266
A
O
LEU
262
A
O
LEU
263
A
N
ILE
108
A
N
ILE
109
A
N
VAL
110
A
N
VAL
111
A
O
ALA
301
A
O
ALA
302
A
O
GLU
38
A
O
GLU
39
A
N
ILE
9
A
N
ILE
10
A
N
TRP
10
A
N
TRP
11
A
O
ILE
59
A
O
ILE
60
A
N
ILE
60
A
N
ILE
61
A
O
GLY
265
A
O
GLY
266
A
N
VAL
259
A
N
VAL
260
A
O
GLU
328
A
O
GLU
329
A
N
TYR
99
A
N
TYR
100
A
O
LYS
102
A
O
LYS
103
A
N
SER
145
A
N
SER
146
A
O
ALA
223
A
O
ALA
224
A
O
ALA
223
A
O
ALA
224
A
N
ASN
118
A
N
ASN
119
A
N
LEU
115
A
N
LEU
116
A
O
THR
245
A
O
THR
246
A
N
GLU
172
A
N
GLU
173
A
O
LYS
175
A
O
LYS
176
A
N
PHE
250
A
N
PHE
251
A
O
GLN
253
A
O
GLN
254
1
A
ZN
403
E
ZN
1
A
MET
0
A
MET
1
1
Y
1
A
ASP
55
-115.26
-169.09
1
A
ILE
108
-121.11
-54.66
1
A
LEU
122
-154.21
76.77
1
A
ASP
209
-119.08
-167.98
1
G
3FG
3
-137.18
-31.16
0.6758
-0.0000
0.0000
-4.7390
-0.0000
4.0632
0.2310
0.1880
0.1901
2.050
39.8900
2385
47469
5.02
99.94
1.000
0.470
0.24
1
1.39
MOLECULAR REPLACEMENT
22.13
0.95
1.20
ML
FLAT BULK SOLVENT MODEL
41.663
0.392
2.050
39.8900
155
3221
73
0
2993
0.006
3136
1.045
4271
11.954
1153
0.067
461
0.008
551
0.3095
0.2567
2.1233
254
4520
100.00
0.2746
0.2247
2.2083
248
4471
100.00
0.2542
0.2132
2.3088
246
4476
100.00
0.2625
0.1968
2.4305
210
4527
100.00
0.2287
0.2021
2.5827
221
4538
100.00
0.2802
0.1984
2.7821
266
4493
100.00
0.2560
0.1915
3.0620
221
4528
100.00
0.2085
0.1743
3.5048
237
4501
100.00
0.2055
0.1622
4.4148
256
4512
100.00
0.2008
0.1831
39.9078
226
4518
100.00
2.05
39.89
3VFJ
47482
-3
1
100
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.6.2_432
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data reduction
XDS
Maltose-binding periplasmic protein, C-terminal fused by Cys-Lys-D-Ala-D-Ala, teicoplanin
The structure of monodechloro-teicoplanin in complex with its ligand, using MBP as a ligand carrier
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
9
N
N
5
N
N
10
N
N
10
N
N
A
GLY
16
A
GLY
17
HELX_P
A
GLY
32
A
GLY
33
1
1
17
A
LYS
42
A
LYS
43
HELX_P
A
ALA
52
A
ALA
53
1
2
11
A
ARG
66
A
ARG
67
HELX_P
A
SER
73
A
SER
74
1
3
8
A
ASP
82
A
ASP
83
HELX_P
A
ASP
87
A
ASP
88
1
4
6
A
TYR
90
A
TYR
91
HELX_P
A
ALA
96
A
ALA
97
1
5
7
A
GLU
131
A
GLU
132
HELX_P
A
ALA
141
A
ALA
142
1
6
11
A
GLU
153
A
GLU
154
HELX_P
A
ASP
164
A
ASP
165
1
7
12
A
ASN
185
A
ASN
186
HELX_P
A
ASN
201
A
ASN
202
1
8
17
A
ASP
209
A
ASP
210
HELX_P
A
LYS
219
A
LYS
220
1
9
11
A
GLY
228
A
GLY
229
HELX_P
A
TRP
230
A
TRP
231
5
10
3
A
ALA
231
A
ALA
232
HELX_P
A
LYS
239
A
LYS
240
1
11
9
A
ASN
272
A
ASN
273
HELX_P
A
TYR
283
A
TYR
284
1
12
12
A
THR
286
A
THR
287
HELX_P
A
LYS
297
A
LYS
298
1
13
12
A
LEU
304
A
LEU
305
HELX_P
A
ALA
312
A
ALA
313
1
14
9
A
ASP
314
A
ASP
315
HELX_P
A
GLY
327
A
GLY
328
1
15
14
A
GLN
335
A
GLN
336
HELX_P
A
SER
352
A
SER
353
1
16
18
A
THR
356
A
THR
357
HELX_P
A
GLY
373
A
GLY
374
1
17
18
covale
1.328
both
A
GLY
373
A
C
GLY
374
1_555
A
CCS
374
A
N
CCS
375
1_555
covale
1.327
both
A
CCS
374
A
C
CCS
375
1_555
A
LYS
375
A
N
LYS
376
1_555
covale
1.327
both
A
LYS
375
A
C
LYS
376
1_555
A
DAL
376
A
N
DAL
377
1_555
covale
1.328
both
A
DAL
376
A
C
DAL
377
1_555
A
DAL
377
A
N
DAL
378
1_555
covale
1.328
both
G
GHP
1
B
C
GHP
1
1_555
G
3MY
2
B
N
3MY
2
1_555
covale
1.366
none
G
GHP
1
B
C5
GHP
1
1_555
G
3FG
3
B
OD1
3FG
3
1_555
covale
1.329
both
G
3MY
2
B
C
3MY
2
1_555
G
3FG
3
B
N
3FG
3
1_555
covale
1.384
none
G
3MY
2
B
OBD
3MY
2
1_555
G
GHP
4
B
C3
GHP
4
1_555
covale
1.327
both
G
3FG
3
B
C
3FG
3
1_555
G
GHP
4
B
N
GHP
4
1_555
covale
1.328
both
G
GHP
4
B
C
GHP
4
1_555
G
GHP
5
B
N
GHP
5
1_555
covale
1.391
none
G
GHP
4
B
C5
GHP
4
1_555
G
OMX
6
B
OH
OMX
6
1_555
covale
1.384
one
G
GHP
4
B
O4
GHP
4
1_555
G
GCS
8
N
C1
GCS
1_555
covale
1.325
both
G
GHP
5
B
C
GHP
5
1_555
G
OMX
6
B
N
OMX
6
1_555
covale
1.400
none
G
GHP
5
B
C3
GHP
5
1_555
G
3FG
7
B
CG1
3FG
7
1_555
covale
1.328
both
G
OMX
6
B
C
OMX
6
1_555
G
3FG
7
B
N
3FG
7
1_555
covale
1.377
one
G
OMX
6
B
OC
OMX
6
1_555
G
NAG
10
P
C1
NAG
1_555
covale
1.420
one
G
3FG
7
B
OD1
3FG
7
1_555
G
MAN
11
Q
C1
MAN
1_555
covale
1.400
both
G
GCS
8
N
N2
GCS
1_555
G
T55
9
O
C
T55
1_555
metalc
2.213
A
HIS
39
A
ND1
HIS
40
1_555
A
ZN
407
I
ZN
ZN
1_555
metalc
2.286
A
HIS
39
A
O
HIS
40
1_555
A
ZN
407
I
ZN
ZN
1_555
metalc
2.322
A
ASP
65
A
OD2
ASP
66
1_555
A
ZN
402
D
ZN
ZN
1_555
metalc
2.578
A
ASP
65
A
OD1
ASP
66
1_555
A
ZN
402
D
ZN
ZN
1_555
metalc
2.376
A
ASP
82
A
OD2
ASP
83
1_555
A
ZN
408
J
ZN
ZN
1_555
metalc
2.143
A
GLU
111
A
OE2
GLU
112
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.056
A
GLU
172
A
OE1
GLU
173
1_555
A
ZN
405
G
ZN
ZN
1_555
metalc
2.135
A
ASP
177
A
OD2
ASP
178
1_555
A
ZN
405
G
ZN
ZN
1_555
metalc
2.127
A
HIS
203
A
NE2
HIS
204
1_555
A
ZN
406
H
ZN
ZN
1_555
metalc
2.234
A
GLU
288
A
OE2
GLU
289
1_555
A
ZN
403
E
ZN
ZN
1_555
metalc
2.636
A
GLU
288
A
OE1
GLU
289
1_555
A
ZN
403
E
ZN
ZN
1_555
metalc
2.148
A
GLU
291
A
OE1
GLU
292
1_555
A
ZN
403
E
ZN
ZN
1_555
metalc
2.310
A
GLU
359
A
OE1
GLU
360
1_555
A
ZN
404
F
ZN
ZN
1_555
metalc
2.587
A
ASP
363
A
OD1
ASP
364
1_555
A
ZN
404
F
ZN
ZN
1_555
metalc
2.654
A
ASP
363
A
OD2
ASP
364
1_555
A
ZN
404
F
ZN
ZN
1_555
metalc
2.088
A
ZN
401
C
ZN
ZN
1_555
A
ACT
410
L
OXT
ACT
1_555
metalc
2.127
A
ZN
402
D
ZN
ZN
1_555
A
HOH
547
S
O
HOH
1_555
metalc
2.387
A
ZN
404
F
ZN
ZN
1_555
A
HOH
621
S
O
HOH
1_555
metalc
2.114
A
ZN
405
G
ZN
ZN
1_555
A
HOH
614
S
O
HOH
1_555
metalc
2.307
A
ZN
406
H
ZN
ZN
1_555
A
HOH
533
S
O
HOH
1_555
metalc
2.467
A
ZN
406
H
ZN
ZN
1_555
A
HOH
615
S
O
HOH
1_555
metalc
2.186
A
ZN
407
I
ZN
ZN
1_555
A
HOH
594
S
O
HOH
1_555
SUGAR BINDING PROTEIN/ANTIBIOTIC
teicoplanin, acetylation of cyteine with iodoacetate modification, SUGAR BINDING PROTEIN-ANTIBIOTIC complex
G
GHP
5
B
GHP
5
1
G
OMX
6
B
OMX
6
3.88
MALE_ECOLI
UNP
1
27
P0AEX9
KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT
PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL
IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT
MENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQT
3VFJ
PDB
2
3VFJ
27
392
3VFJ
1
366
P0AEX9
A
1
2
367
1
7
3VFJ
1
7
3VFJ
G
2
1
7
1
expression tag
MET
0
3VFJ
A
P0AEX9
UNP
1
1
SEE REMARK 999
ASN
367
3VFJ
A
P0AEX9
UNP
368
1
SEE REMARK 999
ALA
368
3VFJ
A
P0AEX9
UNP
369
1
SEE REMARK 999
ALA
369
3VFJ
A
P0AEX9
UNP
370
1
SEE REMARK 999
ALA
370
3VFJ
A
P0AEX9
UNP
371
1
SEE REMARK 999
ALA
371
3VFJ
A
P0AEX9
UNP
372
1
SEE REMARK 999
ALA
372
3VFJ
A
P0AEX9
UNP
373
1
SEE REMARK 999
GLY
373
3VFJ
A
P0AEX9
UNP
374
1
SEE REMARK 999
CCS
374
3VFJ
A
P0AEX9
UNP
375
1
SEE REMARK 999
LYS
375
3VFJ
A
P0AEX9
UNP
376
1
SEE REMARK 999
DAL
376
3VFJ
A
P0AEX9
UNP
377
1
SEE REMARK 999
DAL
377
3VFJ
A
P0AEX9
UNP
378
6
5
2
4
2
2
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
34
A
LYS
35
A
GLU
38
A
GLU
39
A
LYS
6
A
LYS
7
A
TRP
10
A
TRP
11
A
ILE
59
A
ILE
60
A
ALA
63
A
ALA
64
A
PHE
258
A
PHE
259
A
ILE
266
A
ILE
267
A
TYR
106
A
TYR
107
A
GLU
111
A
GLU
112
A
ALA
301
A
ALA
302
A
VAL
302
A
VAL
303
A
LYS
34
A
LYS
35
A
GLU
38
A
GLU
39
A
LYS
6
A
LYS
7
A
TRP
10
A
TRP
11
A
ILE
59
A
ILE
60
A
ALA
63
A
ALA
64
A
PHE
258
A
PHE
259
A
ILE
266
A
ILE
267
A
GLU
328
A
GLU
329
A
ILE
329
A
ILE
330
A
ARG
98
A
ARG
99
A
TYR
99
A
TYR
100
A
LYS
102
A
LYS
103
A
LEU
103
A
LEU
104
A
SER
145
A
SER
146
A
LEU
147
A
LEU
148
A
THR
222
A
THR
223
A
ASN
227
A
ASN
228
A
SER
114
A
SER
115
A
ASN
118
A
ASN
119
A
TYR
242
A
TYR
243
A
THR
245
A
THR
246
A
TYR
167
A
TYR
168
A
GLU
172
A
GLU
173
A
LYS
175
A
LYS
176
A
GLY
182
A
GLY
183
A
THR
249
A
THR
250
A
PHE
250
A
PHE
251
A
GLN
253
A
GLN
254
A
PRO
254
A
PRO
255
20
C 2 2 21