0.023344
0.000000
0.000000
0.000000
0.016172
0.000000
0.000000
0.000000
0.012776
0.00000
0.00000
0.00000
Yamagata, A.
Tainer, J.A.
Donnenberg, M.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
42.837
61.836
78.271
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
419
110
124
10.1016/j.jmb.2012.02.041
22387466
Structure of an Essential Type IV Pilus Biogenesis Protein Provides Insights into Pilus and Type II Secretion Systems
2012
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2004-01-01
ADSC QUANTUM 315
MAD
M
x-ray
1
0.9791
1.0
0.9793
1.0
0.9639
1.0
5.0.2
ALS
0.9791, 0.9793, 0.9639
SYNCHROTRON
ALS BEAMLINE 5.0.2
19286.238
BfpC
N terminal domain, UNP residues 1-165
I2V
1
man
polymer
18.015
water
119
nat
water
Putative uncharacterized protein bfpC
no
yes
(MSE)VKNNLGVAVIGSKQYAVNLLWGSSQDTETTNQALNKSLTL(MSE)SSKLYSVIGRFQGEQFAVGDKNIGHKRGQV
TLLSAIDFDGSSFCGLFPADNELWLVIGVDKDG(MSE)VHFDKSFHSKDDAKKFFFDHVAYGYPWDRTYSPSDVGVGESR
SISELSLIKGKKLKEKGSHHHHHH
MVKNNLGVAVIGSKQYAVNLLWGSSQDTETTNQALNKSLTLMSSKLYSVIGRFQGEQFAVGDKNIGHKRGQVTLLSAIDF
DGSSFCGLFPADNELWLVIGVDKDGMVHFDKSFHSKDDAKKFFFDHVAYGYPWDRTYSPSDVGVGESRSISELSLIKGKK
LKEKGSHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
bfpC, MAR006
562
Escherichia coli
562
Escherichia coli
B834
plasmid
pRPA302
1
2.71
54.57
VAPOR DIFFUSION, HANGING DROP
5.5
2.0M Ammonium sulfate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
repository
Initial release
1
0
2012-05-23
PDBJ
Y
PDBJ
2011-08-25
REL
REL
HOH
water
WAT
1
2
HOH
HOH
201
A
WAT
2
2
HOH
HOH
202
A
WAT
3
2
HOH
HOH
203
A
WAT
4
2
HOH
HOH
204
A
WAT
5
2
HOH
HOH
205
A
WAT
6
2
HOH
HOH
206
A
WAT
7
2
HOH
HOH
207
A
WAT
8
2
HOH
HOH
208
A
WAT
9
2
HOH
HOH
209
A
WAT
10
2
HOH
HOH
210
A
WAT
11
2
HOH
HOH
211
A
WAT
12
2
HOH
HOH
212
A
WAT
13
2
HOH
HOH
213
A
WAT
14
2
HOH
HOH
214
A
WAT
15
2
HOH
HOH
215
A
WAT
16
2
HOH
HOH
216
A
WAT
17
2
HOH
HOH
217
A
WAT
18
2
HOH
HOH
218
A
WAT
19
2
HOH
HOH
219
A
WAT
20
2
HOH
HOH
220
A
WAT
21
2
HOH
HOH
221
A
WAT
22
2
HOH
HOH
222
A
WAT
23
2
HOH
HOH
223
A
WAT
24
2
HOH
HOH
224
A
WAT
25
2
HOH
HOH
225
A
WAT
26
2
HOH
HOH
226
A
WAT
27
2
HOH
HOH
227
A
WAT
28
2
HOH
HOH
228
A
WAT
29
2
HOH
HOH
229
A
WAT
30
2
HOH
HOH
230
A
WAT
31
2
HOH
HOH
231
A
WAT
32
2
HOH
HOH
232
A
WAT
33
2
HOH
HOH
233
A
WAT
34
2
HOH
HOH
234
A
WAT
35
2
HOH
HOH
235
A
WAT
36
2
HOH
HOH
236
A
WAT
37
2
HOH
HOH
237
A
WAT
38
2
HOH
HOH
238
A
WAT
39
2
HOH
HOH
239
A
WAT
40
2
HOH
HOH
240
A
WAT
41
2
HOH
HOH
241
A
WAT
42
2
HOH
HOH
242
A
WAT
43
2
HOH
HOH
243
A
WAT
44
2
HOH
HOH
244
A
WAT
45
2
HOH
HOH
245
A
WAT
46
2
HOH
HOH
246
A
WAT
47
2
HOH
HOH
247
A
WAT
48
2
HOH
HOH
248
A
WAT
49
2
HOH
HOH
249
A
WAT
50
2
HOH
HOH
250
A
WAT
51
2
HOH
HOH
251
A
WAT
52
2
HOH
HOH
252
A
WAT
53
2
HOH
HOH
253
A
WAT
54
2
HOH
HOH
254
A
WAT
55
2
HOH
HOH
255
A
WAT
56
2
HOH
HOH
256
A
WAT
57
2
HOH
HOH
257
A
WAT
58
2
HOH
HOH
258
A
WAT
59
2
HOH
HOH
259
A
WAT
60
2
HOH
HOH
260
A
WAT
61
2
HOH
HOH
261
A
WAT
62
2
HOH
HOH
262
A
WAT
63
2
HOH
HOH
263
A
WAT
64
2
HOH
HOH
264
A
WAT
65
2
HOH
HOH
265
A
WAT
66
2
HOH
HOH
266
A
WAT
67
2
HOH
HOH
267
A
WAT
68
2
HOH
HOH
268
A
WAT
70
2
HOH
HOH
269
A
WAT
71
2
HOH
HOH
270
A
WAT
72
2
HOH
HOH
271
A
WAT
73
2
HOH
HOH
272
A
WAT
74
2
HOH
HOH
273
A
WAT
75
2
HOH
HOH
274
A
WAT
76
2
HOH
HOH
275
A
WAT
77
2
HOH
HOH
276
A
WAT
78
2
HOH
HOH
277
A
WAT
79
2
HOH
HOH
278
A
WAT
81
2
HOH
HOH
279
A
WAT
85
2
HOH
HOH
280
A
WAT
86
2
HOH
HOH
281
A
WAT
88
2
HOH
HOH
282
A
WAT
89
2
HOH
HOH
283
A
WAT
90
2
HOH
HOH
284
A
WAT
92
2
HOH
HOH
285
A
WAT
93
2
HOH
HOH
286
A
WAT
97
2
HOH
HOH
287
A
WAT
98
2
HOH
HOH
288
A
WAT
99
2
HOH
HOH
289
A
WAT
100
2
HOH
HOH
290
A
WAT
101
2
HOH
HOH
291
A
WAT
102
2
HOH
HOH
292
A
WAT
103
2
HOH
HOH
293
A
WAT
104
2
HOH
HOH
294
A
WAT
107
2
HOH
HOH
295
A
WAT
108
2
HOH
HOH
296
A
WAT
110
2
HOH
HOH
297
A
WAT
113
2
HOH
HOH
298
A
WAT
117
2
HOH
HOH
299
A
WAT
118
2
HOH
HOH
300
A
WAT
119
2
HOH
HOH
301
A
WAT
121
2
HOH
HOH
302
A
WAT
122
2
HOH
HOH
303
A
WAT
123
2
HOH
HOH
304
A
WAT
127
2
HOH
HOH
305
A
WAT
128
2
HOH
HOH
306
A
WAT
129
2
HOH
HOH
307
A
WAT
130
2
HOH
HOH
308
A
WAT
132
2
HOH
HOH
309
A
WAT
133
2
HOH
HOH
310
A
WAT
134
2
HOH
HOH
311
A
WAT
135
2
HOH
HOH
312
A
WAT
136
2
HOH
HOH
313
A
WAT
137
2
HOH
HOH
314
A
WAT
138
2
HOH
HOH
315
A
WAT
139
2
HOH
HOH
316
A
WAT
140
2
HOH
HOH
317
A
WAT
141
2
HOH
HOH
318
A
WAT
142
2
HOH
HOH
319
A
n
1
1
A
n
2
2
A
LYS
3
n
3
LYS
3
A
ASN
4
n
4
ASN
4
A
ASN
5
n
5
ASN
5
A
LEU
6
n
6
LEU
6
A
GLY
7
n
7
GLY
7
A
VAL
8
n
8
VAL
8
A
ALA
9
n
9
ALA
9
A
VAL
10
n
10
VAL
10
A
ILE
11
n
11
ILE
11
A
GLY
12
n
12
GLY
12
A
SER
13
n
13
SER
13
A
LYS
14
n
14
LYS
14
A
GLN
15
n
15
GLN
15
A
TYR
16
n
16
TYR
16
A
ALA
17
n
17
ALA
17
A
VAL
18
n
18
VAL
18
A
ASN
19
n
19
ASN
19
A
LEU
20
n
20
LEU
20
A
LEU
21
n
21
LEU
21
A
TRP
22
n
22
TRP
22
A
GLY
23
n
23
GLY
23
A
SER
24
n
24
SER
24
A
SER
25
n
25
SER
25
A
GLN
26
n
26
GLN
26
A
ASP
27
n
27
ASP
27
A
THR
28
n
28
THR
28
A
GLU
29
n
29
GLU
29
A
THR
30
n
30
THR
30
A
THR
31
n
31
THR
31
A
ASN
32
n
32
ASN
32
A
GLN
33
n
33
GLN
33
A
ALA
34
n
34
ALA
34
A
LEU
35
n
35
LEU
35
A
ASN
36
n
36
ASN
36
A
LYS
37
n
37
LYS
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
THR
40
n
40
THR
40
A
LEU
41
n
41
LEU
41
A
MSE
42
n
42
MSE
42
A
SER
43
n
43
SER
43
A
SER
44
n
44
SER
44
A
LYS
45
n
45
LYS
45
A
LEU
46
n
46
LEU
46
A
TYR
47
n
47
TYR
47
A
SER
48
n
48
SER
48
A
VAL
49
n
49
VAL
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
PHE
53
n
53
PHE
53
A
GLN
54
n
54
GLN
54
A
GLY
55
n
55
GLY
55
A
GLU
56
n
56
GLU
56
A
GLN
57
n
57
GLN
57
A
PHE
58
n
58
PHE
58
A
ALA
59
n
59
ALA
59
A
VAL
60
n
60
VAL
60
A
GLY
61
n
61
GLY
61
A
ASP
62
n
62
ASP
62
A
LYS
63
n
63
LYS
63
A
ASN
64
n
64
ASN
64
A
ILE
65
n
65
ILE
65
A
GLY
66
n
66
GLY
66
A
HIS
67
n
67
HIS
67
A
LYS
68
n
68
LYS
68
A
ARG
69
n
69
ARG
69
A
GLY
70
n
70
GLY
70
A
GLN
71
n
71
GLN
71
A
VAL
72
n
72
VAL
72
A
THR
73
n
73
THR
73
A
LEU
74
n
74
LEU
74
A
LEU
75
n
75
LEU
75
A
SER
76
n
76
SER
76
A
ALA
77
n
77
ALA
77
A
ILE
78
n
78
ILE
78
A
ASP
79
n
79
ASP
79
A
PHE
80
n
80
PHE
80
A
ASP
81
n
81
ASP
81
A
GLY
82
n
82
GLY
82
A
SER
83
n
83
SER
83
A
SER
84
n
84
SER
84
A
PHE
85
n
85
PHE
85
A
CYS
86
n
86
CYS
86
A
GLY
87
n
87
GLY
87
A
LEU
88
n
88
LEU
88
A
PHE
89
n
89
PHE
89
A
PRO
90
n
90
PRO
90
A
ALA
91
n
91
ALA
91
A
ASP
92
n
92
ASP
92
A
ASN
93
n
93
ASN
93
A
GLU
94
n
94
GLU
94
A
LEU
95
n
95
LEU
95
A
TRP
96
n
96
TRP
96
A
LEU
97
n
97
LEU
97
A
VAL
98
n
98
VAL
98
A
ILE
99
n
99
ILE
99
A
GLY
100
n
100
GLY
100
A
VAL
101
n
101
VAL
101
A
ASP
102
n
102
ASP
102
A
LYS
103
n
103
LYS
103
A
ASP
104
n
104
ASP
104
A
GLY
105
n
105
GLY
105
A
MSE
106
n
106
MSE
106
A
VAL
107
n
107
VAL
107
A
HIS
108
n
108
HIS
108
A
PHE
109
n
109
PHE
109
A
ASP
110
n
110
ASP
110
A
LYS
111
n
111
LYS
111
A
SER
112
n
112
SER
112
A
PHE
113
n
113
PHE
113
A
HIS
114
n
114
HIS
114
A
SER
115
n
115
SER
115
A
LYS
116
n
116
LYS
116
A
ASP
117
n
117
ASP
117
A
ASP
118
n
118
ASP
118
A
ALA
119
n
119
ALA
119
A
LYS
120
n
120
LYS
120
A
LYS
121
n
121
LYS
121
A
PHE
122
n
122
PHE
122
A
PHE
123
n
123
PHE
123
A
PHE
124
n
124
PHE
124
A
ASP
125
n
125
ASP
125
A
HIS
126
n
126
HIS
126
A
VAL
127
n
127
VAL
127
A
ALA
128
n
128
ALA
128
A
TYR
129
n
129
TYR
129
A
GLY
130
n
130
GLY
130
A
TYR
131
n
131
TYR
131
A
PRO
132
n
132
PRO
132
A
TRP
133
n
133
TRP
133
A
ASP
134
n
134
ASP
134
A
ARG
135
n
135
ARG
135
A
THR
136
n
136
THR
136
A
TYR
137
n
137
TYR
137
A
SER
138
n
138
SER
138
A
PRO
139
n
139
PRO
139
A
SER
140
n
140
SER
140
A
ASP
141
n
141
ASP
141
A
VAL
142
n
142
VAL
142
A
GLY
143
n
143
GLY
143
A
VAL
144
n
144
VAL
144
A
GLY
145
n
145
GLY
145
A
GLU
146
n
146
GLU
146
A
SER
147
n
147
SER
147
A
ARG
148
n
148
ARG
148
A
SER
149
n
149
SER
149
A
ILE
150
n
150
ILE
150
A
SER
151
n
151
SER
151
A
GLU
152
n
152
GLU
152
A
LEU
153
n
153
LEU
153
A
SER
154
n
154
SER
154
A
LEU
155
n
155
LEU
155
A
ILE
156
n
156
ILE
156
A
LYS
157
n
157
LYS
157
A
GLY
158
n
158
GLY
158
A
LYS
159
n
159
LYS
159
A
LYS
160
n
160
LYS
160
A
LEU
161
n
161
LEU
161
A
LYS
162
n
162
LYS
162
A
GLU
163
n
163
GLU
163
A
LYS
164
n
164
LYS
164
A
n
165
165
A
n
166
166
A
n
167
167
A
n
168
168
A
n
169
169
A
n
170
170
A
n
171
171
A
n
172
172
A
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
42
SELENOMETHIONINE
A
MSE
42
MET
A
MSE
106
SELENOMETHIONINE
A
MSE
106
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
9
A
N
ALA
9
A
O
TYR
16
A
O
TYR
16
A
N
ALA
17
A
N
ALA
17
A
O
VAL
72
A
O
VAL
72
A
N
GLY
23
A
N
GLY
23
A
O
PHE
58
A
O
PHE
58
A
O
GLN
57
A
O
GLN
57
A
N
ILE
50
A
N
ILE
50
A
N
TYR
47
A
N
TYR
47
A
O
LYS
162
A
O
LYS
162
A
O
PHE
113
A
O
PHE
113
A
N
TRP
96
A
N
TRP
96
A
O
LEU
97
A
O
LEU
97
A
N
PHE
89
A
N
PHE
89
A
N
LEU
88
A
N
LEU
88
A
O
TYR
137
A
O
TYR
137
1
A
MSE
1
A
MSE
1
1
Y
1
A
VAL
2
A
VAL
2
1
Y
1
A
GLY
165
A
GLY
165
1
Y
1
A
SER
166
A
SER
166
1
Y
1
A
HIS
167
A
HIS
167
1
Y
1
A
HIS
168
A
HIS
168
1
Y
1
A
HIS
169
A
HIS
169
1
Y
1
A
HIS
170
A
HIS
170
1
Y
1
A
HIS
171
A
HIS
171
1
Y
1
A
HIS
172
A
HIS
172
1
Y
1
A
ASP
27
56.32
-131.74
1
A
ASN
93
-112.88
50.07
1
A
ASP
110
-153.70
87.49
1
A
VAL
127
-103.97
-61.73
protein_rep.param
protein.top
water.param
water.top
26.1372
1.0870
0.0000
0.0000
-8.2120
0.0000
7.1250
BULK SOLVENT MODEL USED
0.2273
0.008
0.217
0.217
1.90
19.93
810
16509
4.8
97.0
RANDOM
164402.40
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MAD
FLAT MODEL
63.7389
0.45
0.24
0.22
5.00
0.16
0.12
1.90
19.93
119
1384
0
0
1265
0.005
1.2
24.1
0.67
1.250
1.50
1.929
2.00
2.206
2.00
3.292
2.50
0.262
0.024
0.237
2.02
115
2457
6
4.5
92.8
14.3
1.9
20
3VHJ
16999
1
99.9
data collection
HKL-2000
phasing
SOLVE
refinement
CNS
1.2
data reduction
HKL-2000
data scaling
HKL-2000
BfpC
Crystal structure of the cytoplasmic domain of BfpC
1
N
N
2
N
N
A
THR
30
A
THR
30
HELX_P
A
SER
43
A
SER
43
1
1
14
A
ASP
62
A
ASP
62
HELX_P
A
GLY
66
A
GLY
66
5
2
5
A
LEU
74
A
LEU
74
HELX_P
A
ILE
78
A
ILE
78
1
3
5
A
SER
115
A
SER
115
HELX_P
A
VAL
127
A
VAL
127
1
4
13
A
SER
149
A
SER
149
HELX_P
A
LEU
153
A
LEU
153
5
5
5
covale
1.326
A
LEU
41
A
C
LEU
41
1_555
A
MSE
42
A
N
MSE
42
1_555
covale
1.329
A
MSE
42
A
C
MSE
42
1_555
A
SER
43
A
N
SER
43
1_555
covale
1.328
A
GLY
105
A
C
GLY
105
1_555
A
MSE
106
A
N
MSE
106
1_555
covale
1.327
A
MSE
106
A
C
MSE
106
1_555
A
VAL
107
A
N
VAL
107
1_555
MEMBRANE PROTEIN
type IV pilus biogenesis, BfpD, membrane, MEMBRANE PROTEIN
Q57029_ECOLX
UNP
1
1
Q57029
MIKNNLGVAVIGSKQYAVNLLWGSSQDTETTNQALNKSLTLMSSKLYSVIGRFQGEQFAVGDKNIGHKRGQVTLLSAIDF
DGSSFCGLFPADNELWLVIGVDKDGMVHFDKSFHSKDDAKKFFFDHVAYGYPWDRTYSPSDVGVGESRSISELSLIKGKK
LKEKG
1
165
3VHJ
1
165
Q57029
A
1
1
165
1
ILE
ENGINEERED MUTATION
VAL
2
3VHJ
A
Q57029
UNP
2
2
1
EXPRESSION TAG
SER
166
3VHJ
A
Q57029
UNP
166
1
EXPRESSION TAG
HIS
167
3VHJ
A
Q57029
UNP
167
1
EXPRESSION TAG
HIS
168
3VHJ
A
Q57029
UNP
168
1
EXPRESSION TAG
HIS
169
3VHJ
A
Q57029
UNP
169
1
EXPRESSION TAG
HIS
170
3VHJ
A
Q57029
UNP
170
1
EXPRESSION TAG
HIS
171
3VHJ
A
Q57029
UNP
171
1
EXPRESSION TAG
HIS
172
3VHJ
A
Q57029
UNP
172
3
4
4
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
VAL
8
A
VAL
8
A
ILE
11
A
ILE
11
A
LYS
14
A
LYS
14
A
ALA
17
A
ALA
17
A
VAL
72
A
VAL
72
A
THR
73
A
THR
73
A
LEU
21
A
LEU
21
A
GLY
23
A
GLY
23
A
GLY
55
A
GLY
55
A
VAL
60
A
VAL
60
A
LEU
46
A
LEU
46
A
ARG
52
A
ARG
52
A
LYS
162
A
LYS
162
A
GLU
163
A
GLU
163
A
VAL
107
A
VAL
107
A
PHE
113
A
PHE
113
A
TRP
96
A
TRP
96
A
VAL
101
A
VAL
101
A
PHE
85
A
PHE
85
A
PRO
90
A
PRO
90
A
ARG
135
A
ARG
135
A
TYR
137
A
TYR
137
19
P 21 21 21