0.023344 0.000000 0.000000 0.000000 0.016172 0.000000 0.000000 0.000000 0.012776 0.00000 0.00000 0.00000 Yamagata, A. Tainer, J.A. Donnenberg, M.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 42.837 61.836 78.271 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 419 110 124 10.1016/j.jmb.2012.02.041 22387466 Structure of an Essential Type IV Pilus Biogenesis Protein Provides Insights into Pilus and Type II Secretion Systems 2012 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2004-01-01 ADSC QUANTUM 315 MAD M x-ray 1 0.9791 1.0 0.9793 1.0 0.9639 1.0 5.0.2 ALS 0.9791, 0.9793, 0.9639 SYNCHROTRON ALS BEAMLINE 5.0.2 19286.238 BfpC N terminal domain, UNP residues 1-165 I2V 1 man polymer 18.015 water 119 nat water Putative uncharacterized protein bfpC no yes (MSE)VKNNLGVAVIGSKQYAVNLLWGSSQDTETTNQALNKSLTL(MSE)SSKLYSVIGRFQGEQFAVGDKNIGHKRGQV TLLSAIDFDGSSFCGLFPADNELWLVIGVDKDG(MSE)VHFDKSFHSKDDAKKFFFDHVAYGYPWDRTYSPSDVGVGESR SISELSLIKGKKLKEKGSHHHHHH MVKNNLGVAVIGSKQYAVNLLWGSSQDTETTNQALNKSLTLMSSKLYSVIGRFQGEQFAVGDKNIGHKRGQVTLLSAIDF DGSSFCGLFPADNELWLVIGVDKDGMVHFDKSFHSKDDAKKFFFDHVAYGYPWDRTYSPSDVGVGESRSISELSLIKGKK LKEKGSHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample bfpC, MAR006 562 Escherichia coli 562 Escherichia coli B834 plasmid pRPA302 1 2.71 54.57 VAPOR DIFFUSION, HANGING DROP 5.5 2.0M Ammonium sulfate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 repository Initial release 1 0 2012-05-23 PDBJ Y PDBJ 2011-08-25 REL REL HOH water WAT 1 2 HOH HOH 201 A WAT 2 2 HOH HOH 202 A WAT 3 2 HOH HOH 203 A WAT 4 2 HOH HOH 204 A WAT 5 2 HOH HOH 205 A WAT 6 2 HOH HOH 206 A WAT 7 2 HOH HOH 207 A WAT 8 2 HOH HOH 208 A WAT 9 2 HOH HOH 209 A WAT 10 2 HOH HOH 210 A WAT 11 2 HOH HOH 211 A WAT 12 2 HOH HOH 212 A WAT 13 2 HOH HOH 213 A WAT 14 2 HOH HOH 214 A WAT 15 2 HOH HOH 215 A WAT 16 2 HOH HOH 216 A WAT 17 2 HOH HOH 217 A WAT 18 2 HOH HOH 218 A WAT 19 2 HOH HOH 219 A WAT 20 2 HOH HOH 220 A WAT 21 2 HOH HOH 221 A WAT 22 2 HOH HOH 222 A WAT 23 2 HOH HOH 223 A WAT 24 2 HOH HOH 224 A WAT 25 2 HOH HOH 225 A WAT 26 2 HOH HOH 226 A WAT 27 2 HOH HOH 227 A WAT 28 2 HOH HOH 228 A WAT 29 2 HOH HOH 229 A WAT 30 2 HOH HOH 230 A WAT 31 2 HOH HOH 231 A WAT 32 2 HOH HOH 232 A WAT 33 2 HOH HOH 233 A WAT 34 2 HOH HOH 234 A WAT 35 2 HOH HOH 235 A WAT 36 2 HOH HOH 236 A WAT 37 2 HOH HOH 237 A WAT 38 2 HOH HOH 238 A WAT 39 2 HOH HOH 239 A WAT 40 2 HOH HOH 240 A WAT 41 2 HOH HOH 241 A WAT 42 2 HOH HOH 242 A WAT 43 2 HOH HOH 243 A WAT 44 2 HOH HOH 244 A WAT 45 2 HOH HOH 245 A WAT 46 2 HOH HOH 246 A WAT 47 2 HOH HOH 247 A WAT 48 2 HOH HOH 248 A WAT 49 2 HOH HOH 249 A WAT 50 2 HOH HOH 250 A WAT 51 2 HOH HOH 251 A WAT 52 2 HOH HOH 252 A WAT 53 2 HOH HOH 253 A WAT 54 2 HOH HOH 254 A WAT 55 2 HOH HOH 255 A WAT 56 2 HOH HOH 256 A WAT 57 2 HOH HOH 257 A WAT 58 2 HOH HOH 258 A WAT 59 2 HOH HOH 259 A WAT 60 2 HOH HOH 260 A WAT 61 2 HOH HOH 261 A WAT 62 2 HOH HOH 262 A WAT 63 2 HOH HOH 263 A WAT 64 2 HOH HOH 264 A WAT 65 2 HOH HOH 265 A WAT 66 2 HOH HOH 266 A WAT 67 2 HOH HOH 267 A WAT 68 2 HOH HOH 268 A WAT 70 2 HOH HOH 269 A WAT 71 2 HOH HOH 270 A WAT 72 2 HOH HOH 271 A WAT 73 2 HOH HOH 272 A WAT 74 2 HOH HOH 273 A WAT 75 2 HOH HOH 274 A WAT 76 2 HOH HOH 275 A WAT 77 2 HOH HOH 276 A WAT 78 2 HOH HOH 277 A WAT 79 2 HOH HOH 278 A WAT 81 2 HOH HOH 279 A WAT 85 2 HOH HOH 280 A WAT 86 2 HOH HOH 281 A WAT 88 2 HOH HOH 282 A WAT 89 2 HOH HOH 283 A WAT 90 2 HOH HOH 284 A WAT 92 2 HOH HOH 285 A WAT 93 2 HOH HOH 286 A WAT 97 2 HOH HOH 287 A WAT 98 2 HOH HOH 288 A WAT 99 2 HOH HOH 289 A WAT 100 2 HOH HOH 290 A WAT 101 2 HOH HOH 291 A WAT 102 2 HOH HOH 292 A WAT 103 2 HOH HOH 293 A WAT 104 2 HOH HOH 294 A WAT 107 2 HOH HOH 295 A WAT 108 2 HOH HOH 296 A WAT 110 2 HOH HOH 297 A WAT 113 2 HOH HOH 298 A WAT 117 2 HOH HOH 299 A WAT 118 2 HOH HOH 300 A WAT 119 2 HOH HOH 301 A WAT 121 2 HOH HOH 302 A WAT 122 2 HOH HOH 303 A WAT 123 2 HOH HOH 304 A WAT 127 2 HOH HOH 305 A WAT 128 2 HOH HOH 306 A WAT 129 2 HOH HOH 307 A WAT 130 2 HOH HOH 308 A WAT 132 2 HOH HOH 309 A WAT 133 2 HOH HOH 310 A WAT 134 2 HOH HOH 311 A WAT 135 2 HOH HOH 312 A WAT 136 2 HOH HOH 313 A WAT 137 2 HOH HOH 314 A WAT 138 2 HOH HOH 315 A WAT 139 2 HOH HOH 316 A WAT 140 2 HOH HOH 317 A WAT 141 2 HOH HOH 318 A WAT 142 2 HOH HOH 319 A n 1 1 A n 2 2 A LYS 3 n 3 LYS 3 A ASN 4 n 4 ASN 4 A ASN 5 n 5 ASN 5 A LEU 6 n 6 LEU 6 A GLY 7 n 7 GLY 7 A VAL 8 n 8 VAL 8 A ALA 9 n 9 ALA 9 A VAL 10 n 10 VAL 10 A ILE 11 n 11 ILE 11 A GLY 12 n 12 GLY 12 A SER 13 n 13 SER 13 A LYS 14 n 14 LYS 14 A GLN 15 n 15 GLN 15 A TYR 16 n 16 TYR 16 A ALA 17 n 17 ALA 17 A VAL 18 n 18 VAL 18 A ASN 19 n 19 ASN 19 A LEU 20 n 20 LEU 20 A LEU 21 n 21 LEU 21 A TRP 22 n 22 TRP 22 A GLY 23 n 23 GLY 23 A SER 24 n 24 SER 24 A SER 25 n 25 SER 25 A GLN 26 n 26 GLN 26 A ASP 27 n 27 ASP 27 A THR 28 n 28 THR 28 A GLU 29 n 29 GLU 29 A THR 30 n 30 THR 30 A THR 31 n 31 THR 31 A ASN 32 n 32 ASN 32 A GLN 33 n 33 GLN 33 A ALA 34 n 34 ALA 34 A LEU 35 n 35 LEU 35 A ASN 36 n 36 ASN 36 A LYS 37 n 37 LYS 37 A SER 38 n 38 SER 38 A LEU 39 n 39 LEU 39 A THR 40 n 40 THR 40 A LEU 41 n 41 LEU 41 A MSE 42 n 42 MSE 42 A SER 43 n 43 SER 43 A SER 44 n 44 SER 44 A LYS 45 n 45 LYS 45 A LEU 46 n 46 LEU 46 A TYR 47 n 47 TYR 47 A SER 48 n 48 SER 48 A VAL 49 n 49 VAL 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A PHE 53 n 53 PHE 53 A GLN 54 n 54 GLN 54 A GLY 55 n 55 GLY 55 A GLU 56 n 56 GLU 56 A GLN 57 n 57 GLN 57 A PHE 58 n 58 PHE 58 A ALA 59 n 59 ALA 59 A VAL 60 n 60 VAL 60 A GLY 61 n 61 GLY 61 A ASP 62 n 62 ASP 62 A LYS 63 n 63 LYS 63 A ASN 64 n 64 ASN 64 A ILE 65 n 65 ILE 65 A GLY 66 n 66 GLY 66 A HIS 67 n 67 HIS 67 A LYS 68 n 68 LYS 68 A ARG 69 n 69 ARG 69 A GLY 70 n 70 GLY 70 A GLN 71 n 71 GLN 71 A VAL 72 n 72 VAL 72 A THR 73 n 73 THR 73 A LEU 74 n 74 LEU 74 A LEU 75 n 75 LEU 75 A SER 76 n 76 SER 76 A ALA 77 n 77 ALA 77 A ILE 78 n 78 ILE 78 A ASP 79 n 79 ASP 79 A PHE 80 n 80 PHE 80 A ASP 81 n 81 ASP 81 A GLY 82 n 82 GLY 82 A SER 83 n 83 SER 83 A SER 84 n 84 SER 84 A PHE 85 n 85 PHE 85 A CYS 86 n 86 CYS 86 A GLY 87 n 87 GLY 87 A LEU 88 n 88 LEU 88 A PHE 89 n 89 PHE 89 A PRO 90 n 90 PRO 90 A ALA 91 n 91 ALA 91 A ASP 92 n 92 ASP 92 A ASN 93 n 93 ASN 93 A GLU 94 n 94 GLU 94 A LEU 95 n 95 LEU 95 A TRP 96 n 96 TRP 96 A LEU 97 n 97 LEU 97 A VAL 98 n 98 VAL 98 A ILE 99 n 99 ILE 99 A GLY 100 n 100 GLY 100 A VAL 101 n 101 VAL 101 A ASP 102 n 102 ASP 102 A LYS 103 n 103 LYS 103 A ASP 104 n 104 ASP 104 A GLY 105 n 105 GLY 105 A MSE 106 n 106 MSE 106 A VAL 107 n 107 VAL 107 A HIS 108 n 108 HIS 108 A PHE 109 n 109 PHE 109 A ASP 110 n 110 ASP 110 A LYS 111 n 111 LYS 111 A SER 112 n 112 SER 112 A PHE 113 n 113 PHE 113 A HIS 114 n 114 HIS 114 A SER 115 n 115 SER 115 A LYS 116 n 116 LYS 116 A ASP 117 n 117 ASP 117 A ASP 118 n 118 ASP 118 A ALA 119 n 119 ALA 119 A LYS 120 n 120 LYS 120 A LYS 121 n 121 LYS 121 A PHE 122 n 122 PHE 122 A PHE 123 n 123 PHE 123 A PHE 124 n 124 PHE 124 A ASP 125 n 125 ASP 125 A HIS 126 n 126 HIS 126 A VAL 127 n 127 VAL 127 A ALA 128 n 128 ALA 128 A TYR 129 n 129 TYR 129 A GLY 130 n 130 GLY 130 A TYR 131 n 131 TYR 131 A PRO 132 n 132 PRO 132 A TRP 133 n 133 TRP 133 A ASP 134 n 134 ASP 134 A ARG 135 n 135 ARG 135 A THR 136 n 136 THR 136 A TYR 137 n 137 TYR 137 A SER 138 n 138 SER 138 A PRO 139 n 139 PRO 139 A SER 140 n 140 SER 140 A ASP 141 n 141 ASP 141 A VAL 142 n 142 VAL 142 A GLY 143 n 143 GLY 143 A VAL 144 n 144 VAL 144 A GLY 145 n 145 GLY 145 A GLU 146 n 146 GLU 146 A SER 147 n 147 SER 147 A ARG 148 n 148 ARG 148 A SER 149 n 149 SER 149 A ILE 150 n 150 ILE 150 A SER 151 n 151 SER 151 A GLU 152 n 152 GLU 152 A LEU 153 n 153 LEU 153 A SER 154 n 154 SER 154 A LEU 155 n 155 LEU 155 A ILE 156 n 156 ILE 156 A LYS 157 n 157 LYS 157 A GLY 158 n 158 GLY 158 A LYS 159 n 159 LYS 159 A LYS 160 n 160 LYS 160 A LEU 161 n 161 LEU 161 A LYS 162 n 162 LYS 162 A GLU 163 n 163 GLU 163 A LYS 164 n 164 LYS 164 A n 165 165 A n 166 166 A n 167 167 A n 168 168 A n 169 169 A n 170 170 A n 171 171 A n 172 172 A author_and_software_defined_assembly PISA 1 monomeric A MSE 42 SELENOMETHIONINE A MSE 42 MET A MSE 106 SELENOMETHIONINE A MSE 106 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 9 A N ALA 9 A O TYR 16 A O TYR 16 A N ALA 17 A N ALA 17 A O VAL 72 A O VAL 72 A N GLY 23 A N GLY 23 A O PHE 58 A O PHE 58 A O GLN 57 A O GLN 57 A N ILE 50 A N ILE 50 A N TYR 47 A N TYR 47 A O LYS 162 A O LYS 162 A O PHE 113 A O PHE 113 A N TRP 96 A N TRP 96 A O LEU 97 A O LEU 97 A N PHE 89 A N PHE 89 A N LEU 88 A N LEU 88 A O TYR 137 A O TYR 137 1 A MSE 1 A MSE 1 1 Y 1 A VAL 2 A VAL 2 1 Y 1 A GLY 165 A GLY 165 1 Y 1 A SER 166 A SER 166 1 Y 1 A HIS 167 A HIS 167 1 Y 1 A HIS 168 A HIS 168 1 Y 1 A HIS 169 A HIS 169 1 Y 1 A HIS 170 A HIS 170 1 Y 1 A HIS 171 A HIS 171 1 Y 1 A HIS 172 A HIS 172 1 Y 1 A ASP 27 56.32 -131.74 1 A ASN 93 -112.88 50.07 1 A ASP 110 -153.70 87.49 1 A VAL 127 -103.97 -61.73 protein_rep.param protein.top water.param water.top 26.1372 1.0870 0.0000 0.0000 -8.2120 0.0000 7.1250 BULK SOLVENT MODEL USED 0.2273 0.008 0.217 0.217 1.90 19.93 810 16509 4.8 97.0 RANDOM 164402.40 0.000000 1 RESTRAINED THROUGHOUT 0.0 MAD FLAT MODEL 63.7389 0.45 0.24 0.22 5.00 0.16 0.12 1.90 19.93 119 1384 0 0 1265 0.005 1.2 24.1 0.67 1.250 1.50 1.929 2.00 2.206 2.00 3.292 2.50 0.262 0.024 0.237 2.02 115 2457 6 4.5 92.8 14.3 1.9 20 3VHJ 16999 1 99.9 data collection HKL-2000 phasing SOLVE refinement CNS 1.2 data reduction HKL-2000 data scaling HKL-2000 BfpC Crystal structure of the cytoplasmic domain of BfpC 1 N N 2 N N A THR 30 A THR 30 HELX_P A SER 43 A SER 43 1 1 14 A ASP 62 A ASP 62 HELX_P A GLY 66 A GLY 66 5 2 5 A LEU 74 A LEU 74 HELX_P A ILE 78 A ILE 78 1 3 5 A SER 115 A SER 115 HELX_P A VAL 127 A VAL 127 1 4 13 A SER 149 A SER 149 HELX_P A LEU 153 A LEU 153 5 5 5 covale 1.326 A LEU 41 A C LEU 41 1_555 A MSE 42 A N MSE 42 1_555 covale 1.329 A MSE 42 A C MSE 42 1_555 A SER 43 A N SER 43 1_555 covale 1.328 A GLY 105 A C GLY 105 1_555 A MSE 106 A N MSE 106 1_555 covale 1.327 A MSE 106 A C MSE 106 1_555 A VAL 107 A N VAL 107 1_555 MEMBRANE PROTEIN type IV pilus biogenesis, BfpD, membrane, MEMBRANE PROTEIN Q57029_ECOLX UNP 1 1 Q57029 MIKNNLGVAVIGSKQYAVNLLWGSSQDTETTNQALNKSLTLMSSKLYSVIGRFQGEQFAVGDKNIGHKRGQVTLLSAIDF DGSSFCGLFPADNELWLVIGVDKDGMVHFDKSFHSKDDAKKFFFDHVAYGYPWDRTYSPSDVGVGESRSISELSLIKGKK LKEKG 1 165 3VHJ 1 165 Q57029 A 1 1 165 1 ILE ENGINEERED MUTATION VAL 2 3VHJ A Q57029 UNP 2 2 1 EXPRESSION TAG SER 166 3VHJ A Q57029 UNP 166 1 EXPRESSION TAG HIS 167 3VHJ A Q57029 UNP 167 1 EXPRESSION TAG HIS 168 3VHJ A Q57029 UNP 168 1 EXPRESSION TAG HIS 169 3VHJ A Q57029 UNP 169 1 EXPRESSION TAG HIS 170 3VHJ A Q57029 UNP 170 1 EXPRESSION TAG HIS 171 3VHJ A Q57029 UNP 171 1 EXPRESSION TAG HIS 172 3VHJ A Q57029 UNP 172 3 4 4 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A VAL 8 A VAL 8 A ILE 11 A ILE 11 A LYS 14 A LYS 14 A ALA 17 A ALA 17 A VAL 72 A VAL 72 A THR 73 A THR 73 A LEU 21 A LEU 21 A GLY 23 A GLY 23 A GLY 55 A GLY 55 A VAL 60 A VAL 60 A LEU 46 A LEU 46 A ARG 52 A ARG 52 A LYS 162 A LYS 162 A GLU 163 A GLU 163 A VAL 107 A VAL 107 A PHE 113 A PHE 113 A TRP 96 A TRP 96 A VAL 101 A VAL 101 A PHE 85 A PHE 85 A PRO 90 A PRO 90 A ARG 135 A ARG 135 A TYR 137 A TYR 137 19 P 21 21 21