0.007632 0.000000 0.004410 0.000000 0.013599 0.000000 0.000000 0.000000 0.014227 0.000000 0.000000 0.000000 Terai, T. Maki, E. Sugiyama, S. Takahashi, Y. Matsumura, H. Mori, Y. Nagano, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 120.020 90.000 131.020 73.535 81.180 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C20 H23 N3 O9 S 481.476 5-[(3aS,4R,6aR)-1-{[(1R)-1-(6-nitro-1,3-benzodioxol-5-yl)ethoxy]carbonyl}-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Chem.Biol. CBOLE2 2050 1074-5521 18 1261 1272 10.1016/j.chembiol.2011.09.007 22035795 Rational development of caged-biotin protein-labeling agents and some applications in live cells 2011 100 1 CCD 2010-11-18 RAYONIX MX225HE SINGLE WAVELENGTH M x-ray 1 0.9 1.0 BL44XU SPring-8 0.9 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 13716.431 Avidin UNP residues 25-147 4 nat polymer 481.476 5-[(3aS,4R,6aR)-1-{[(1R)-1-(6-nitro-1,3-benzodioxol-5-yl)ethoxy]carbonyl}-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid 4 syn non-polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 4 man non-polymer 96.063 SULFATE ION 6 syn non-polymer 18.015 water 202 nat water no no ARKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYITAVTATSNEIKESPLHGTQNTINKRTQPTFGFTVNWKFSESTTVFT GQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFTRL ARKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYITAVTATSNEIKESPLHGTQNTINKRTQPTFGFTVNWKFSESTTVFT GQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFTRL A,B,C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n chicken sample 9031 Gallus gallus 1 3.09 60.14 0.354 VAPOR DIFFUSION, SITTING DROP 5 2.5-2.7M ammonium sulfate, 0.1M sodium citrate(pH 4.0-5.0), vapor diffusion, sitting drop, temperature 293K 293 software chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Refinement description Data collection Derived calculations Structure summary 1 0 2011-12-28 1 1 2017-11-22 1 2 2020-07-29 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc PDBJ Y PDBJ 2011-08-29 REL REL NPK 5-[(3aS,4R,6aR)-1-{[(1R)-1-(6-nitro-1,3-benzodioxol-5-yl)ethoxy]carbonyl}-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid NAG 2-acetamido-2-deoxy-beta-D-glucopyranose SO4 SULFATE ION HOH water NPC 1124 2 NPK NPK 1124 A NAG 1125 3 NAG NAG 1125 A SO4 1126 4 SO4 SO4 1126 A SO4 1127 4 SO4 SO4 1127 A NPC 1124 2 NPK NPK 1124 B NAG 1125 3 NAG NAG 1125 B SO4 1126 4 SO4 SO4 1126 B SO4 1127 4 SO4 SO4 1127 B NPC 1124 2 NPK NPK 1124 C NAG 1125 3 NAG NAG 1125 C SO4 1127 4 SO4 SO4 1127 C NPC 1124 2 NPK NPK 1124 D NAG 1125 3 NAG NAG 1125 D SO4 1126 4 SO4 SO4 1126 D HOH 1 5 HOH HOH 124 A HOH 3 5 HOH HOH 125 A HOH 4 5 HOH HOH 126 A HOH 5 5 HOH HOH 127 A HOH 6 5 HOH HOH 128 A HOH 10 5 HOH HOH 129 A HOH 11 5 HOH HOH 130 A HOH 12 5 HOH HOH 131 A HOH 14 5 HOH HOH 132 A HOH 17 5 HOH HOH 133 A HOH 18 5 HOH HOH 134 A HOH 19 5 HOH HOH 135 A HOH 20 5 HOH HOH 136 A HOH 21 5 HOH HOH 137 A HOH 22 5 HOH HOH 138 A HOH 23 5 HOH HOH 139 A HOH 24 5 HOH HOH 140 A HOH 25 5 HOH HOH 141 A HOH 26 5 HOH HOH 142 A HOH 33 5 HOH HOH 143 A HOH 34 5 HOH HOH 144 A HOH 36 5 HOH HOH 145 A HOH 38 5 HOH HOH 146 A HOH 40 5 HOH HOH 147 A HOH 41 5 HOH HOH 148 A HOH 44 5 HOH HOH 149 A HOH 46 5 HOH HOH 150 A HOH 47 5 HOH HOH 151 A HOH 48 5 HOH HOH 152 A HOH 53 5 HOH HOH 155 A HOH 54 5 HOH HOH 156 A HOH 55 5 HOH HOH 157 A HOH 56 5 HOH HOH 158 A HOH 94 5 HOH HOH 159 A HOH 95 5 HOH HOH 160 A HOH 96 5 HOH HOH 161 A HOH 101 5 HOH HOH 162 A HOH 104 5 HOH HOH 163 A HOH 123 5 HOH HOH 164 A HOH 170 5 HOH HOH 170 A HOH 175 5 HOH HOH 175 A HOH 178 5 HOH HOH 178 A HOH 190 5 HOH HOH 190 A HOH 192 5 HOH HOH 192 A HOH 195 5 HOH HOH 195 A HOH 198 5 HOH HOH 198 A HOH 200 5 HOH HOH 200 A HOH 201 5 HOH HOH 201 A HOH 203 5 HOH HOH 203 A HOH 205 5 HOH HOH 205 A HOH 206 5 HOH HOH 206 A HOH 9 5 HOH HOH 124 B HOH 28 5 HOH HOH 125 B HOH 29 5 HOH HOH 126 B HOH 30 5 HOH HOH 127 B HOH 31 5 HOH HOH 128 B HOH 32 5 HOH HOH 129 B HOH 35 5 HOH HOH 130 B HOH 37 5 HOH HOH 131 B HOH 39 5 HOH HOH 132 B HOH 42 5 HOH HOH 133 B HOH 43 5 HOH HOH 134 B HOH 45 5 HOH HOH 135 B HOH 51 5 HOH HOH 136 B HOH 59 5 HOH HOH 137 B HOH 60 5 HOH HOH 138 B HOH 61 5 HOH HOH 139 B HOH 62 5 HOH HOH 140 B HOH 63 5 HOH HOH 141 B HOH 64 5 HOH HOH 142 B HOH 72 5 HOH HOH 143 B HOH 74 5 HOH HOH 144 B HOH 75 5 HOH HOH 145 B HOH 76 5 HOH HOH 146 B HOH 77 5 HOH HOH 147 B HOH 86 5 HOH HOH 148 B HOH 87 5 HOH HOH 149 B HOH 88 5 HOH HOH 150 B HOH 92 5 HOH HOH 151 B HOH 93 5 HOH HOH 152 B HOH 49 5 HOH HOH 153 B HOH 50 5 HOH HOH 154 B HOH 99 5 HOH HOH 155 B HOH 100 5 HOH HOH 156 B HOH 102 5 HOH HOH 157 B HOH 103 5 HOH HOH 158 B HOH 97 5 HOH HOH 159 B HOH 98 5 HOH HOH 160 B HOH 184 5 HOH HOH 184 B HOH 188 5 HOH HOH 188 B HOH 189 5 HOH HOH 189 B HOH 194 5 HOH HOH 194 B HOH 199 5 HOH HOH 199 B HOH 202 5 HOH HOH 202 B HOH 207 5 HOH HOH 207 B HOH 208 5 HOH HOH 208 B HOH 124 5 HOH HOH 124 C HOH 125 5 HOH HOH 125 C HOH 126 5 HOH HOH 126 C HOH 2 5 HOH HOH 127 C HOH 128 5 HOH HOH 128 C HOH 7 5 HOH HOH 129 C HOH 130 5 HOH HOH 130 C HOH 131 5 HOH HOH 131 C HOH 8 5 HOH HOH 132 C HOH 133 5 HOH HOH 133 C HOH 134 5 HOH HOH 134 C HOH 135 5 HOH HOH 135 C HOH 136 5 HOH HOH 136 C HOH 137 5 HOH HOH 137 C HOH 13 5 HOH HOH 138 C HOH 139 5 HOH HOH 139 C HOH 140 5 HOH HOH 140 C HOH 15 5 HOH HOH 141 C HOH 16 5 HOH HOH 142 C HOH 143 5 HOH HOH 143 C HOH 144 5 HOH HOH 144 C HOH 68 5 HOH HOH 145 C HOH 146 5 HOH HOH 146 C HOH 69 5 HOH HOH 147 C HOH 148 5 HOH HOH 148 C HOH 149 5 HOH HOH 149 C HOH 150 5 HOH HOH 150 C HOH 151 5 HOH HOH 151 C HOH 152 5 HOH HOH 152 C HOH 153 5 HOH HOH 153 C HOH 154 5 HOH HOH 154 C HOH 155 5 HOH HOH 155 C HOH 73 5 HOH HOH 156 C HOH 79 5 HOH HOH 157 C HOH 80 5 HOH HOH 158 C HOH 105 5 HOH HOH 159 C HOH 106 5 HOH HOH 160 C HOH 108 5 HOH HOH 161 C HOH 109 5 HOH HOH 162 C HOH 110 5 HOH HOH 163 C HOH 111 5 HOH HOH 164 C HOH 114 5 HOH HOH 165 C HOH 116 5 HOH HOH 166 C HOH 118 5 HOH HOH 167 C HOH 119 5 HOH HOH 168 C HOH 169 5 HOH HOH 169 C HOH 120 5 HOH HOH 170 C HOH 122 5 HOH HOH 171 C HOH 176 5 HOH HOH 176 C HOH 180 5 HOH HOH 180 C HOH 181 5 HOH HOH 181 C HOH 182 5 HOH HOH 182 C HOH 185 5 HOH HOH 185 C HOH 186 5 HOH HOH 186 C HOH 187 5 HOH HOH 187 C HOH 191 5 HOH HOH 191 C HOH 193 5 HOH HOH 193 C HOH 27 5 HOH HOH 124 D HOH 57 5 HOH HOH 125 D HOH 58 5 HOH HOH 126 D HOH 127 5 HOH HOH 127 D HOH 65 5 HOH HOH 128 D HOH 129 5 HOH HOH 129 D HOH 66 5 HOH HOH 130 D HOH 67 5 HOH HOH 131 D HOH 132 5 HOH HOH 132 D HOH 70 5 HOH HOH 133 D HOH 71 5 HOH HOH 134 D HOH 78 5 HOH HOH 135 D HOH 81 5 HOH HOH 136 D HOH 82 5 HOH HOH 137 D HOH 138 5 HOH HOH 138 D HOH 83 5 HOH HOH 139 D HOH 84 5 HOH HOH 140 D HOH 141 5 HOH HOH 141 D HOH 142 5 HOH HOH 142 D HOH 85 5 HOH HOH 143 D HOH 89 5 HOH HOH 144 D HOH 145 5 HOH HOH 145 D HOH 90 5 HOH HOH 146 D HOH 147 5 HOH HOH 147 D HOH 91 5 HOH HOH 148 D HOH 107 5 HOH HOH 149 D HOH 112 5 HOH HOH 150 D HOH 113 5 HOH HOH 151 D HOH 117 5 HOH HOH 152 D HOH 121 5 HOH HOH 153 D HOH 156 5 HOH HOH 156 D HOH 157 5 HOH HOH 157 D HOH 158 5 HOH HOH 158 D HOH 159 5 HOH HOH 159 D HOH 161 5 HOH HOH 161 D HOH 162 5 HOH HOH 162 D HOH 163 5 HOH HOH 163 D HOH 164 5 HOH HOH 164 D HOH 165 5 HOH HOH 165 D HOH 166 5 HOH HOH 166 D HOH 167 5 HOH HOH 167 D HOH 168 5 HOH HOH 168 D HOH 171 5 HOH HOH 171 D HOH 172 5 HOH HOH 172 D HOH 173 5 HOH HOH 173 D HOH 174 5 HOH HOH 174 D HOH 179 5 HOH HOH 179 D HOH 209 5 HOH HOH 209 D HOH 210 5 HOH HOH 210 D ALA 1 n 1 ALA 1 A ARG 2 n 2 ARG 2 A LYS 3 n 3 LYS 3 A CYS 4 n 4 CYS 4 A SER 5 n 5 SER 5 A LEU 6 n 6 LEU 6 A THR 7 n 7 THR 7 A GLY 8 n 8 GLY 8 A LYS 9 n 9 LYS 9 A TRP 10 n 10 TRP 10 A THR 11 n 11 THR 11 A ASN 12 n 12 ASN 12 A ASP 13 n 13 ASP 13 A LEU 14 n 14 LEU 14 A GLY 15 n 15 GLY 15 A SER 16 n 16 SER 16 A ASN 17 n 17 ASN 17 A MET 18 n 18 MET 18 A THR 19 n 19 THR 19 A ILE 20 n 20 ILE 20 A GLY 21 n 21 GLY 21 A ALA 22 n 22 ALA 22 A VAL 23 n 23 VAL 23 A ASN 24 n 24 ASN 24 A SER 25 n 25 SER 25 A ARG 26 n 26 ARG 26 A GLY 27 n 27 GLY 27 A GLU 28 n 28 GLU 28 A PHE 29 n 29 PHE 29 A THR 30 n 30 THR 30 A GLY 31 n 31 GLY 31 A THR 32 n 32 THR 32 A TYR 33 n 33 TYR 33 A ILE 34 n 34 ILE 34 A THR 35 n 35 THR 35 A ALA 36 n 36 ALA 36 A VAL 37 n 37 VAL 37 A THR 38 n 38 THR 38 A ALA 39 n 39 ALA 39 A THR 40 n 40 THR 40 A SER 41 n 41 SER 41 A ASN 42 n 42 ASN 42 A GLU 43 n 43 GLU 43 A ILE 44 n 44 ILE 44 A LYS 45 n 45 LYS 45 A GLU 46 n 46 GLU 46 A SER 47 n 47 SER 47 A PRO 48 n 48 PRO 48 A LEU 49 n 49 LEU 49 A HIS 50 n 50 HIS 50 A GLY 51 n 51 GLY 51 A THR 52 n 52 THR 52 A GLN 53 n 53 GLN 53 A ASN 54 n 54 ASN 54 A THR 55 n 55 THR 55 A ILE 56 n 56 ILE 56 A ASN 57 n 57 ASN 57 A LYS 58 n 58 LYS 58 A ARG 59 n 59 ARG 59 A THR 60 n 60 THR 60 A GLN 61 n 61 GLN 61 A PRO 62 n 62 PRO 62 A THR 63 n 63 THR 63 A PHE 64 n 64 PHE 64 A GLY 65 n 65 GLY 65 A PHE 66 n 66 PHE 66 A THR 67 n 67 THR 67 A VAL 68 n 68 VAL 68 A ASN 69 n 69 ASN 69 A TRP 70 n 70 TRP 70 A LYS 71 n 71 LYS 71 A PHE 72 n 72 PHE 72 A SER 73 n 73 SER 73 A GLU 74 n 74 GLU 74 A SER 75 n 75 SER 75 A THR 76 n 76 THR 76 A THR 77 n 77 THR 77 A VAL 78 n 78 VAL 78 A PHE 79 n 79 PHE 79 A THR 80 n 80 THR 80 A GLY 81 n 81 GLY 81 A GLN 82 n 82 GLN 82 A CYS 83 n 83 CYS 83 A PHE 84 n 84 PHE 84 A ILE 85 n 85 ILE 85 A ASP 86 n 86 ASP 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A GLY 89 n 89 GLY 89 A LYS 90 n 90 LYS 90 A GLU 91 n 91 GLU 91 A VAL 92 n 92 VAL 92 A LEU 93 n 93 LEU 93 A LYS 94 n 94 LYS 94 A THR 95 n 95 THR 95 A MET 96 n 96 MET 96 A TRP 97 n 97 TRP 97 A LEU 98 n 98 LEU 98 A LEU 99 n 99 LEU 99 A ARG 100 n 100 ARG 100 A SER 101 n 101 SER 101 A SER 102 n 102 SER 102 A VAL 103 n 103 VAL 103 A ASN 104 n 104 ASN 104 A ASP 105 n 105 ASP 105 A ILE 106 n 106 ILE 106 A GLY 107 n 107 GLY 107 A ASP 108 n 108 ASP 108 A ASP 109 n 109 ASP 109 A TRP 110 n 110 TRP 110 A LYS 111 n 111 LYS 111 A ALA 112 n 112 ALA 112 A THR 113 n 113 THR 113 A ARG 114 n 114 ARG 114 A VAL 115 n 115 VAL 115 A GLY 116 n 116 GLY 116 A ILE 117 n 117 ILE 117 A ASN 118 n 118 ASN 118 A ILE 119 n 119 ILE 119 A PHE 120 n 120 PHE 120 A THR 121 n 121 THR 121 A ARG 122 n 122 ARG 122 A LEU 123 n 123 LEU 123 A n 1 1 B n 2 2 B LYS 3 n 3 LYS 3 B CYS 4 n 4 CYS 4 B SER 5 n 5 SER 5 B LEU 6 n 6 LEU 6 B THR 7 n 7 THR 7 B GLY 8 n 8 GLY 8 B LYS 9 n 9 LYS 9 B TRP 10 n 10 TRP 10 B THR 11 n 11 THR 11 B ASN 12 n 12 ASN 12 B ASP 13 n 13 ASP 13 B LEU 14 n 14 LEU 14 B GLY 15 n 15 GLY 15 B SER 16 n 16 SER 16 B ASN 17 n 17 ASN 17 B MET 18 n 18 MET 18 B THR 19 n 19 THR 19 B ILE 20 n 20 ILE 20 B GLY 21 n 21 GLY 21 B ALA 22 n 22 ALA 22 B VAL 23 n 23 VAL 23 B ASN 24 n 24 ASN 24 B SER 25 n 25 SER 25 B ARG 26 n 26 ARG 26 B GLY 27 n 27 GLY 27 B GLU 28 n 28 GLU 28 B PHE 29 n 29 PHE 29 B THR 30 n 30 THR 30 B GLY 31 n 31 GLY 31 B THR 32 n 32 THR 32 B TYR 33 n 33 TYR 33 B ILE 34 n 34 ILE 34 B THR 35 n 35 THR 35 B ALA 36 n 36 ALA 36 B VAL 37 n 37 VAL 37 B THR 38 n 38 THR 38 B ALA 39 n 39 ALA 39 B THR 40 n 40 THR 40 B SER 41 n 41 SER 41 B ASN 42 n 42 ASN 42 B GLU 43 n 43 GLU 43 B ILE 44 n 44 ILE 44 B LYS 45 n 45 LYS 45 B GLU 46 n 46 GLU 46 B SER 47 n 47 SER 47 B PRO 48 n 48 PRO 48 B LEU 49 n 49 LEU 49 B HIS 50 n 50 HIS 50 B GLY 51 n 51 GLY 51 B THR 52 n 52 THR 52 B GLN 53 n 53 GLN 53 B ASN 54 n 54 ASN 54 B THR 55 n 55 THR 55 B ILE 56 n 56 ILE 56 B ASN 57 n 57 ASN 57 B LYS 58 n 58 LYS 58 B ARG 59 n 59 ARG 59 B THR 60 n 60 THR 60 B GLN 61 n 61 GLN 61 B PRO 62 n 62 PRO 62 B THR 63 n 63 THR 63 B PHE 64 n 64 PHE 64 B GLY 65 n 65 GLY 65 B PHE 66 n 66 PHE 66 B THR 67 n 67 THR 67 B VAL 68 n 68 VAL 68 B ASN 69 n 69 ASN 69 B TRP 70 n 70 TRP 70 B LYS 71 n 71 LYS 71 B PHE 72 n 72 PHE 72 B SER 73 n 73 SER 73 B GLU 74 n 74 GLU 74 B SER 75 n 75 SER 75 B THR 76 n 76 THR 76 B THR 77 n 77 THR 77 B VAL 78 n 78 VAL 78 B PHE 79 n 79 PHE 79 B THR 80 n 80 THR 80 B GLY 81 n 81 GLY 81 B GLN 82 n 82 GLN 82 B CYS 83 n 83 CYS 83 B PHE 84 n 84 PHE 84 B ILE 85 n 85 ILE 85 B ASP 86 n 86 ASP 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B GLY 89 n 89 GLY 89 B LYS 90 n 90 LYS 90 B GLU 91 n 91 GLU 91 B VAL 92 n 92 VAL 92 B LEU 93 n 93 LEU 93 B LYS 94 n 94 LYS 94 B THR 95 n 95 THR 95 B MET 96 n 96 MET 96 B TRP 97 n 97 TRP 97 B LEU 98 n 98 LEU 98 B LEU 99 n 99 LEU 99 B ARG 100 n 100 ARG 100 B SER 101 n 101 SER 101 B SER 102 n 102 SER 102 B VAL 103 n 103 VAL 103 B ASN 104 n 104 ASN 104 B ASP 105 n 105 ASP 105 B ILE 106 n 106 ILE 106 B GLY 107 n 107 GLY 107 B ASP 108 n 108 ASP 108 B ASP 109 n 109 ASP 109 B TRP 110 n 110 TRP 110 B LYS 111 n 111 LYS 111 B ALA 112 n 112 ALA 112 B THR 113 n 113 THR 113 B ARG 114 n 114 ARG 114 B VAL 115 n 115 VAL 115 B GLY 116 n 116 GLY 116 B ILE 117 n 117 ILE 117 B ASN 118 n 118 ASN 118 B ILE 119 n 119 ILE 119 B PHE 120 n 120 PHE 120 B THR 121 n 121 THR 121 B ARG 122 n 122 ARG 122 B LEU 123 n 123 LEU 123 B ALA 1 n 1 ALA 1 C ARG 2 n 2 ARG 2 C LYS 3 n 3 LYS 3 C CYS 4 n 4 CYS 4 C SER 5 n 5 SER 5 C LEU 6 n 6 LEU 6 C THR 7 n 7 THR 7 C GLY 8 n 8 GLY 8 C LYS 9 n 9 LYS 9 C TRP 10 n 10 TRP 10 C THR 11 n 11 THR 11 C ASN 12 n 12 ASN 12 C ASP 13 n 13 ASP 13 C LEU 14 n 14 LEU 14 C GLY 15 n 15 GLY 15 C SER 16 n 16 SER 16 C ASN 17 n 17 ASN 17 C MET 18 n 18 MET 18 C THR 19 n 19 THR 19 C ILE 20 n 20 ILE 20 C GLY 21 n 21 GLY 21 C ALA 22 n 22 ALA 22 C VAL 23 n 23 VAL 23 C ASN 24 n 24 ASN 24 C SER 25 n 25 SER 25 C ARG 26 n 26 ARG 26 C GLY 27 n 27 GLY 27 C GLU 28 n 28 GLU 28 C PHE 29 n 29 PHE 29 C THR 30 n 30 THR 30 C GLY 31 n 31 GLY 31 C THR 32 n 32 THR 32 C TYR 33 n 33 TYR 33 C ILE 34 n 34 ILE 34 C THR 35 n 35 THR 35 C ALA 36 n 36 ALA 36 C VAL 37 n 37 VAL 37 C THR 38 n 38 THR 38 C ALA 39 n 39 ALA 39 C THR 40 n 40 THR 40 C SER 41 n 41 SER 41 C ALA 42 n 42 ASN 42 C GLU 43 n 43 GLU 43 C ILE 44 n 44 ILE 44 C LYS 45 n 45 LYS 45 C GLU 46 n 46 GLU 46 C SER 47 n 47 SER 47 C PRO 48 n 48 PRO 48 C LEU 49 n 49 LEU 49 C HIS 50 n 50 HIS 50 C GLY 51 n 51 GLY 51 C THR 52 n 52 THR 52 C GLN 53 n 53 GLN 53 C ASN 54 n 54 ASN 54 C THR 55 n 55 THR 55 C ILE 56 n 56 ILE 56 C ASN 57 n 57 ASN 57 C LYS 58 n 58 LYS 58 C ARG 59 n 59 ARG 59 C THR 60 n 60 THR 60 C GLN 61 n 61 GLN 61 C PRO 62 n 62 PRO 62 C THR 63 n 63 THR 63 C PHE 64 n 64 PHE 64 C GLY 65 n 65 GLY 65 C PHE 66 n 66 PHE 66 C THR 67 n 67 THR 67 C VAL 68 n 68 VAL 68 C ASN 69 n 69 ASN 69 C TRP 70 n 70 TRP 70 C LYS 71 n 71 LYS 71 C PHE 72 n 72 PHE 72 C SER 73 n 73 SER 73 C GLU 74 n 74 GLU 74 C SER 75 n 75 SER 75 C THR 76 n 76 THR 76 C THR 77 n 77 THR 77 C VAL 78 n 78 VAL 78 C PHE 79 n 79 PHE 79 C THR 80 n 80 THR 80 C GLY 81 n 81 GLY 81 C GLN 82 n 82 GLN 82 C CYS 83 n 83 CYS 83 C PHE 84 n 84 PHE 84 C ILE 85 n 85 ILE 85 C ASP 86 n 86 ASP 86 C ARG 87 n 87 ARG 87 C ASN 88 n 88 ASN 88 C GLY 89 n 89 GLY 89 C LYS 90 n 90 LYS 90 C GLU 91 n 91 GLU 91 C VAL 92 n 92 VAL 92 C LEU 93 n 93 LEU 93 C LYS 94 n 94 LYS 94 C THR 95 n 95 THR 95 C MET 96 n 96 MET 96 C TRP 97 n 97 TRP 97 C LEU 98 n 98 LEU 98 C LEU 99 n 99 LEU 99 C ARG 100 n 100 ARG 100 C SER 101 n 101 SER 101 C SER 102 n 102 SER 102 C VAL 103 n 103 VAL 103 C ASN 104 n 104 ASN 104 C ASP 105 n 105 ASP 105 C ILE 106 n 106 ILE 106 C GLY 107 n 107 GLY 107 C ASP 108 n 108 ASP 108 C ASP 109 n 109 ASP 109 C TRP 110 n 110 TRP 110 C LYS 111 n 111 LYS 111 C ALA 112 n 112 ALA 112 C THR 113 n 113 THR 113 C ARG 114 n 114 ARG 114 C VAL 115 n 115 VAL 115 C GLY 116 n 116 GLY 116 C ILE 117 n 117 ILE 117 C ASN 118 n 118 ASN 118 C ILE 119 n 119 ILE 119 C PHE 120 n 120 PHE 120 C THR 121 n 121 THR 121 C ARG 122 n 122 ARG 122 C LEU 123 n 123 LEU 123 C n 1 1 D n 2 2 D LYS 3 n 3 LYS 3 D CYS 4 n 4 CYS 4 D SER 5 n 5 SER 5 D LEU 6 n 6 LEU 6 D THR 7 n 7 THR 7 D GLY 8 n 8 GLY 8 D LYS 9 n 9 LYS 9 D TRP 10 n 10 TRP 10 D THR 11 n 11 THR 11 D ASN 12 n 12 ASN 12 D ASP 13 n 13 ASP 13 D LEU 14 n 14 LEU 14 D GLY 15 n 15 GLY 15 D SER 16 n 16 SER 16 D ASN 17 n 17 ASN 17 D MET 18 n 18 MET 18 D THR 19 n 19 THR 19 D ILE 20 n 20 ILE 20 D GLY 21 n 21 GLY 21 D ALA 22 n 22 ALA 22 D VAL 23 n 23 VAL 23 D ASN 24 n 24 ASN 24 D SER 25 n 25 SER 25 D ARG 26 n 26 ARG 26 D GLY 27 n 27 GLY 27 D GLU 28 n 28 GLU 28 D PHE 29 n 29 PHE 29 D THR 30 n 30 THR 30 D GLY 31 n 31 GLY 31 D THR 32 n 32 THR 32 D TYR 33 n 33 TYR 33 D ILE 34 n 34 ILE 34 D THR 35 n 35 THR 35 D ALA 36 n 36 ALA 36 D VAL 37 n 37 VAL 37 D THR 38 n 38 THR 38 D ALA 39 n 39 ALA 39 D THR 40 n 40 THR 40 D SER 41 n 41 SER 41 D ASN 42 n 42 ASN 42 D GLU 43 n 43 GLU 43 D ILE 44 n 44 ILE 44 D LYS 45 n 45 LYS 45 D GLU 46 n 46 GLU 46 D SER 47 n 47 SER 47 D PRO 48 n 48 PRO 48 D LEU 49 n 49 LEU 49 D HIS 50 n 50 HIS 50 D GLY 51 n 51 GLY 51 D THR 52 n 52 THR 52 D GLN 53 n 53 GLN 53 D ASN 54 n 54 ASN 54 D THR 55 n 55 THR 55 D ILE 56 n 56 ILE 56 D ASN 57 n 57 ASN 57 D LYS 58 n 58 LYS 58 D ARG 59 n 59 ARG 59 D THR 60 n 60 THR 60 D GLN 61 n 61 GLN 61 D PRO 62 n 62 PRO 62 D THR 63 n 63 THR 63 D PHE 64 n 64 PHE 64 D GLY 65 n 65 GLY 65 D PHE 66 n 66 PHE 66 D THR 67 n 67 THR 67 D VAL 68 n 68 VAL 68 D ASN 69 n 69 ASN 69 D TRP 70 n 70 TRP 70 D LYS 71 n 71 LYS 71 D PHE 72 n 72 PHE 72 D SER 73 n 73 SER 73 D GLU 74 n 74 GLU 74 D SER 75 n 75 SER 75 D THR 76 n 76 THR 76 D THR 77 n 77 THR 77 D VAL 78 n 78 VAL 78 D PHE 79 n 79 PHE 79 D THR 80 n 80 THR 80 D GLY 81 n 81 GLY 81 D GLN 82 n 82 GLN 82 D CYS 83 n 83 CYS 83 D PHE 84 n 84 PHE 84 D ILE 85 n 85 ILE 85 D ASP 86 n 86 ASP 86 D ARG 87 n 87 ARG 87 D ASN 88 n 88 ASN 88 D GLY 89 n 89 GLY 89 D LYS 90 n 90 LYS 90 D GLU 91 n 91 GLU 91 D VAL 92 n 92 VAL 92 D LEU 93 n 93 LEU 93 D LYS 94 n 94 LYS 94 D THR 95 n 95 THR 95 D MET 96 n 96 MET 96 D TRP 97 n 97 TRP 97 D LEU 98 n 98 LEU 98 D LEU 99 n 99 LEU 99 D ARG 100 n 100 ARG 100 D SER 101 n 101 SER 101 D SER 102 n 102 SER 102 D VAL 103 n 103 VAL 103 D ASN 104 n 104 ASN 104 D ASP 105 n 105 ASP 105 D ILE 106 n 106 ILE 106 D GLY 107 n 107 GLY 107 D ASP 108 n 108 ASP 108 D ASP 109 n 109 ASP 109 D TRP 110 n 110 TRP 110 D LYS 111 n 111 LYS 111 D ALA 112 n 112 ALA 112 D THR 113 n 113 THR 113 D ARG 114 n 114 ARG 114 D VAL 115 n 115 VAL 115 D GLY 116 n 116 GLY 116 D ILE 117 n 117 ILE 117 D ASN 118 n 118 ASN 118 D ILE 119 n 119 ILE 119 D PHE 120 n 120 PHE 120 D THR 121 n 121 THR 121 D ARG 122 n 122 ARG 122 D LEU 123 n 123 LEU 123 D author_and_software_defined_assembly PISA 4 tetrameric 12890 -103 19810 A ASN 17 GLYCOSYLATION SITE A ASN 17 ASN B ASN 17 GLYCOSYLATION SITE B ASN 17 ASN C ASN 17 GLYCOSYLATION SITE C ASN 17 ASN D ASN 17 GLYCOSYLATION SITE D ASN 17 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TRP 10 A N TRP 10 A O MET 18 A O MET 18 A N ASN 17 A N ASN 17 A O ILE 34 A O ILE 34 A N TYR 33 A N TYR 33 A O SER 47 A O SER 47 A N HIS 50 A N HIS 50 A O THR 67 A O THR 67 A N VAL 68 A N VAL 68 A O THR 77 A O THR 77 A N THR 76 A N THR 76 A O ARG 100 A O ARG 100 A N LEU 99 A N LEU 99 A O ARG 114 A O ARG 114 A O THR 121 A O THR 121 A N THR 11 A N THR 11 B N TRP 10 B N TRP 10 B O MET 18 B O MET 18 B N ASN 17 B N ASN 17 B O ILE 34 B O ILE 34 B N PHE 29 B N PHE 29 B O GLY 51 B O GLY 51 B N HIS 50 B N HIS 50 B O THR 67 B O THR 67 B N VAL 68 B N VAL 68 B O THR 77 B O THR 77 B N PHE 84 B N PHE 84 B O VAL 92 B O VAL 92 B N LEU 99 B N LEU 99 B O ARG 114 B O ARG 114 B O THR 121 B O THR 121 B N THR 11 B N THR 11 C N TRP 10 C N TRP 10 C O MET 18 C O MET 18 C N ASN 17 C N ASN 17 C O ILE 34 C O ILE 34 C N TYR 33 C N TYR 33 C O SER 47 C O SER 47 C N HIS 50 C N HIS 50 C O THR 67 C O THR 67 C N VAL 68 C N VAL 68 C O THR 77 C O THR 77 C N THR 76 C N THR 76 C O ARG 100 C O ARG 100 C N TRP 97 C N TRP 97 C O GLY 116 C O GLY 116 C O THR 121 C O THR 121 C N THR 11 C N THR 11 D N TRP 10 D N TRP 10 D O MET 18 D O MET 18 D N ASN 17 D N ASN 17 D O ILE 34 D O ILE 34 D N GLY 31 D N GLY 31 D O LEU 49 D O LEU 49 D N HIS 50 D N HIS 50 D O THR 67 D O THR 67 D N VAL 68 D N VAL 68 D O THR 77 D O THR 77 D N PHE 84 D N PHE 84 D O VAL 92 D O VAL 92 D N LEU 99 D N LEU 99 D O ARG 114 D O ARG 114 D O THR 121 D O THR 121 D N THR 11 D N THR 11 1 A HOH 205 S HOH 1 C CG ASN 42 C CG ASN 42 1 Y 1 C OD1 ASN 42 C OD1 ASN 42 1 Y 1 C ND2 ASN 42 C ND2 ASN 42 1 Y 1 B ALA 1 B ALA 1 1 Y 1 B ARG 2 B ARG 2 1 Y 1 D ALA 1 D ALA 1 1 Y 1 D ARG 2 D ARG 2 1 Y 1 A ASN 57 46.13 21.57 1 B LYS 58 33.56 48.11 1 C GLU 46 -38.75 138.06 1 C LYS 58 26.30 57.30 1 D ASN 57 52.94 19.66 1 D LYS 58 32.84 55.24 79.040 28.2242 8.800 0.0100 0.0000 0.0000 0.0000 0.0000 0.0000 0.9510 0.9320 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY 0.2303 0.1885 0.1907 2.0000 37.5200 2228 44247 5.0000 98.1900 0.2244 0.1835 1.000 0.500 0.8462 3.5700 0.1010 0.1590 0.1500 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.1500 0.8000 0.8000 1.4000 MAXIMUM LIKELIHOOD MASK 2.0000 37.5200 202 4241 218 0 3821 0.029 0.022 4121 2.709 1.981 5602 7.722 5.000 484 30.923 23.846 169 18.039 15.000 673 22.657 15.000 26 0.194 0.200 640 0.012 0.020 3038 1.537 1.500 2412 2.658 2.000 3921 3.835 3.000 1709 5.876 4.500 1681 0.2520 0.2130 2.0550 144 3055 3199 20 97.0000 2.000 50.000 3VHM 44266 0.068 1.086 1 10.100 4.300 98.200 0.424 2.000 2.030 2211 1.022 1 4.400 97.100 0.378 2.030 2.070 2174 0.963 1 4.400 97.500 0.307 2.070 2.110 2160 1.065 1 4.400 97.600 0.302 2.110 2.150 2193 1.032 1 4.400 97.400 0.278 2.150 2.200 2183 1.019 1 4.400 97.500 0.299 2.200 2.250 2200 1.892 1 4.400 97.600 0.244 2.250 2.310 2178 1.069 1 4.400 98.100 0.181 2.310 2.370 2217 0.970 1 4.400 98.000 0.169 2.370 2.440 2205 1.028 1 4.400 98.100 0.148 2.440 2.520 2201 0.972 1 4.400 98.100 0.115 2.520 2.610 2204 0.977 1 4.400 98.200 0.110 2.610 2.710 2203 0.985 1 4.400 98.400 0.086 2.710 2.840 2188 0.988 1 4.400 98.600 0.066 2.840 2.990 2247 1.053 1 4.300 98.700 0.054 2.990 3.170 2226 1.080 1 4.300 98.800 0.045 3.170 3.420 2227 1.139 1 4.300 99.000 0.038 3.420 3.760 2250 1.201 1 4.300 99.100 0.034 3.760 4.310 2237 1.149 1 4.300 99.100 0.027 4.310 5.430 2270 1.058 1 4.300 99.200 0.026 5.430 50.000 2292 1.060 1 4.100 98.700 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data reduction HKL-2000 data scaling HKL-2000 Avidin Crystal structure of NPC-biotin-avidin complex 1 N N 1 N N 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N 2 N N 3 N N 4 N N 4 N N 2 N N 3 N N 4 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N A THR 55 A THR 55 HELX_P A ARG 59 A ARG 59 5 1 5 A ASP 105 A ASP 105 HELX_P A LYS 111 A LYS 111 5 2 7 B THR 55 B THR 55 HELX_P B ARG 59 B ARG 59 5 3 5 B ASP 105 B ASP 105 HELX_P B LYS 111 B LYS 111 5 4 7 C THR 55 C THR 55 HELX_P C ARG 59 C ARG 59 5 5 5 C ASP 105 C ASP 105 HELX_P C LYS 111 C LYS 111 5 6 7 D THR 55 D THR 55 HELX_P D ARG 59 D ARG 59 5 7 5 D ASP 105 D ASP 105 HELX_P D LYS 111 D LYS 111 5 8 7 disulf 1.970 A CYS 4 A SG CYS 4 1_555 A CYS 83 A SG CYS 83 1_555 disulf 2.035 B CYS 4 B SG CYS 4 1_555 B CYS 83 B SG CYS 83 1_555 disulf 1.981 C CYS 4 C SG CYS 4 1_555 C CYS 83 C SG CYS 83 1_555 disulf 2.034 D CYS 4 D SG CYS 4 1_555 D CYS 83 D SG CYS 83 1_555 covale 1.716 one N-Glycosylation A ASN 17 A ND2 ASN 17 1_555 A NAG 1125 F C1 NAG 1_555 covale 1.853 one N-Glycosylation B ASN 17 B ND2 ASN 17 1_555 B NAG 1125 J C1 NAG 1_555 covale 1.843 one N-Glycosylation C ASN 17 C ND2 ASN 17 1_555 C NAG 1125 N C1 NAG 1_555 covale 1.759 one N-Glycosylation D ASN 17 D ND2 ASN 17 1_555 D NAG 1125 Q C1 NAG 1_555 BIOTIN-BINDING PROTEIN beta barrel, BIOTIN-BINDING PROTEIN AVID_CHICK UNP 1 25 P02701 ARKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYITAVTATSNEIKESPLHGTQNTINKRTQPTFGFTVNWKFSESTTVFT GQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFTRL 25 147 3VHM 1 123 P02701 A 1 1 123 25 147 3VHM 1 123 P02701 B 1 1 123 25 147 3VHM 1 123 P02701 C 1 1 123 25 147 3VHM 1 123 P02701 D 1 1 123 9 9 9 9 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 8 A GLY 8 A THR 11 A THR 11 A ASN 17 A ASN 17 A ILE 20 A ILE 20 A GLU 28 A GLU 28 A ILE 34 A ILE 34 A SER 47 A SER 47 A GLN 53 A GLN 53 A THR 63 A THR 63 A VAL 68 A VAL 68 A THR 76 A THR 76 A ILE 85 A ILE 85 A GLU 91 A GLU 91 A ARG 100 A ARG 100 A THR 113 A THR 113 A ARG 122 A ARG 122 A GLY 8 A GLY 8 A THR 11 A THR 11 B GLY 8 B GLY 8 B THR 11 B THR 11 B ASN 17 B ASN 17 B ILE 20 B ILE 20 B GLU 28 B GLU 28 B ILE 34 B ILE 34 B SER 47 B SER 47 B GLN 53 B GLN 53 B THR 63 B THR 63 B ASN 69 B ASN 69 B THR 76 B THR 76 B ILE 85 B ILE 85 B GLU 91 B GLU 91 B ARG 100 B ARG 100 B THR 113 B THR 113 B ARG 122 B ARG 122 B GLY 8 B GLY 8 B THR 11 B THR 11 C GLY 8 C GLY 8 C THR 11 C THR 11 C ASN 17 C ASN 17 C ILE 20 C ILE 20 C GLU 28 C GLU 28 C ILE 34 C ILE 34 C SER 47 C SER 47 C GLN 53 C GLN 53 C THR 63 C THR 63 C ASN 69 C ASN 69 C THR 76 C THR 76 C ILE 85 C ILE 85 C GLU 91 C GLU 91 C ARG 100 C ARG 100 C THR 113 C THR 113 C ARG 122 C ARG 122 C GLY 8 C GLY 8 C THR 11 C THR 11 D GLY 8 D GLY 8 D THR 11 D THR 11 D ASN 17 D ASN 17 D ILE 20 D ILE 20 D GLU 28 D GLU 28 D ILE 34 D ILE 34 D SER 47 D SER 47 D GLN 53 D GLN 53 D THR 63 D THR 63 D ASN 69 D ASN 69 D THR 76 D THR 76 D ILE 85 D ILE 85 D GLU 91 D GLU 91 D ARG 100 D ARG 100 D THR 113 D THR 113 D ARG 122 D ARG 122 D GLY 8 D GLY 8 D THR 11 D THR 11 5 C 1 2 1