0.027411 0.000000 0.000000 0.000000 0.013613 0.000000 0.000000 0.000000 0.028859 0.00000 0.00000 0.00000 Suzuki, N. Wakatsuki, S. Kawasaki, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 36.482 73.457 34.651 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer UK Febs J. 1742-464X 10.1111/febs.13734 27062441 A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1. 2016 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2007-12-05 ADSC QUANTUM 270 Si 111 SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 BL-17A Photon Factory 1.0000 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 3243.759 ATPase WRNIP1 UBIQUITIN-BINDING ZINC FINGER DOMAIN (UNP RESIDUES 17-40) 2 man polymer 65.409 ZINC ION 2 syn non-polymer 22.990 SODIUM ION 2 syn non-polymer 18.015 water 16 nat water Werner helicase-interacting protein 1 no no GSPEFQVQCPVCQQMMPAAHINSHLDRCL GSPEFQVQCPVCQQMMPAAHINSHLDRCL A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample WRNIP1, WHIP 9606 Homo sapiens 562 Escherichia coli BL21(DE3) PLASMID pGEX4T-1 1 1.79 31.25 VAPOR DIFFUSION, SITTING DROP 7.5 28% PEG 400, 0.1M HEPES, 0.2M calcium chrolide, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K 293.0 repository Initial release Database references 1 0 2012-10-10 1 1 2016-06-01 PDBJ Y PDBJ 2011-09-06 REL REL ZN ZINC ION NA SODIUM ION HOH water ZN 51 2 ZN ZN 51 A NA 52 3 NA NA 52 A ZN 51 2 ZN ZN 51 B NA 52 3 NA NA 52 B HOH 61 4 HOH HOH 61 A HOH 64 4 HOH HOH 62 A HOH 63 4 HOH HOH 63 A HOH 64 4 HOH HOH 64 A HOH 65 4 HOH HOH 65 A HOH 66 4 HOH HOH 66 A HOH 67 4 HOH HOH 67 A HOH 68 4 HOH HOH 68 A HOH 69 4 HOH HOH 69 A HOH 70 4 HOH HOH 70 A HOH 71 4 HOH HOH 71 A HOH 72 4 HOH HOH 72 A HOH 61 4 HOH HOH 61 B HOH 62 4 HOH HOH 62 B HOH 63 4 HOH HOH 63 B HOH 62 4 HOH HOH 64 B n 1 12 A n 2 13 A n 3 14 A n 4 15 A PHE 16 n 5 PHE 16 A GLN 17 n 6 GLN 17 A VAL 18 n 7 VAL 18 A GLN 19 n 8 GLN 19 A CYS 20 n 9 CYS 20 A PRO 21 n 10 PRO 21 A VAL 22 n 11 VAL 22 A CYS 23 n 12 CYS 23 A GLN 24 n 13 GLN 24 A GLN 25 n 14 GLN 25 A MET 26 n 15 MET 26 A MET 27 n 16 MET 27 A PRO 28 n 17 PRO 28 A ALA 29 n 18 ALA 29 A ALA 30 n 19 ALA 30 A HIS 31 n 20 HIS 31 A ILE 32 n 21 ILE 32 A ASN 33 n 22 ASN 33 A SER 34 n 23 SER 34 A HIS 35 n 24 HIS 35 A LEU 36 n 25 LEU 36 A ASP 37 n 26 ASP 37 A ARG 38 n 27 ARG 38 A CYS 39 n 28 CYS 39 A LEU 40 n 29 LEU 40 A n 1 12 B n 2 13 B n 3 14 B GLU 15 n 4 GLU 15 B PHE 16 n 5 PHE 16 B GLN 17 n 6 GLN 17 B VAL 18 n 7 VAL 18 B GLN 19 n 8 GLN 19 B CYS 20 n 9 CYS 20 B PRO 21 n 10 PRO 21 B VAL 22 n 11 VAL 22 B CYS 23 n 12 CYS 23 B GLN 24 n 13 GLN 24 B GLN 25 n 14 GLN 25 B MET 26 n 15 MET 26 B MET 27 n 16 MET 27 B PRO 28 n 17 PRO 28 B ALA 29 n 18 ALA 29 B ALA 30 n 19 ALA 30 B HIS 31 n 20 HIS 31 B ILE 32 n 21 ILE 32 B ASN 33 n 22 ASN 33 B SER 34 n 23 SER 34 B HIS 35 n 24 HIS 35 B LEU 36 n 25 LEU 36 B ASP 37 n 26 ASP 37 B ARG 38 n 27 ARG 38 B CYS 39 n 28 CYS 39 B LEU 40 n 29 LEU 40 B author_and_software_defined_assembly PISA 2 dimeric 1140 -92 3880 A HIS 35 A NE2 HIS 24 1_555 A ZN 51 C ZN ZN 1_555 A CYS 20 A SG CYS 9 1_555 110.2 A HIS 35 A NE2 HIS 24 1_555 A ZN 51 C ZN ZN 1_555 A CYS 23 A SG CYS 12 1_555 107.8 A CYS 20 A SG CYS 9 1_555 A ZN 51 C ZN ZN 1_555 A CYS 23 A SG CYS 12 1_555 109.4 A HIS 35 A NE2 HIS 24 1_555 A ZN 51 C ZN ZN 1_555 A HOH 61 G O HOH 1_555 108.3 A CYS 20 A SG CYS 9 1_555 A ZN 51 C ZN ZN 1_555 A HOH 61 G O HOH 1_555 108.4 A CYS 23 A SG CYS 12 1_555 A ZN 51 C ZN ZN 1_555 A HOH 61 G O HOH 1_555 112.8 A HIS 31 A NE2 HIS 20 1_555 B ZN 51 E ZN ZN 1_555 B HIS 35 B NE2 HIS 24 1_555 101.7 A HIS 31 A NE2 HIS 20 1_555 B ZN 51 E ZN ZN 1_555 B CYS 23 B SG CYS 12 1_555 110.5 B HIS 35 B NE2 HIS 24 1_555 B ZN 51 E ZN ZN 1_555 B CYS 23 B SG CYS 12 1_555 117.5 A HIS 31 A NE2 HIS 20 1_555 B ZN 51 E ZN ZN 1_555 B CYS 20 B SG CYS 9 1_555 111.4 B HIS 35 B NE2 HIS 24 1_555 B ZN 51 E ZN ZN 1_555 B CYS 20 B SG CYS 9 1_555 100.1 B CYS 23 B SG CYS 12 1_555 B ZN 51 E ZN ZN 1_555 B CYS 20 B SG CYS 9 1_555 114.6 A MET 26 A O MET 15 1_555 B NA 52 F NA NA 1_555 B ASP 37 B OD2 ASP 26 1_555 86.1 A MET 26 A O MET 15 1_555 B NA 52 F NA NA 1_555 B ASP 37 B OD1 ASP 26 1_555 109.1 B ASP 37 B OD2 ASP 26 1_555 B NA 52 F NA NA 1_555 B ASP 37 B OD1 ASP 26 1_555 48.4 A MET 26 A O MET 15 1_555 B NA 52 F NA NA 1_555 B HOH 62 H O HOH 1_555 93.5 B ASP 37 B OD2 ASP 26 1_555 B NA 52 F NA NA 1_555 B HOH 62 H O HOH 1_555 105.9 B ASP 37 B OD1 ASP 26 1_555 B NA 52 F NA NA 1_555 B HOH 62 H O HOH 1_555 62.9 A MET 26 A O MET 15 1_555 B NA 52 F NA NA 1_555 B HOH 64 H O HOH 1_555 117.2 B ASP 37 B OD2 ASP 26 1_555 B NA 52 F NA NA 1_555 B HOH 64 H O HOH 1_555 76.0 B ASP 37 B OD1 ASP 26 1_555 B NA 52 F NA NA 1_555 B HOH 64 H O HOH 1_555 102.1 B HOH 62 H O HOH 1_555 B NA 52 F NA NA 1_555 B HOH 64 H O HOH 1_555 149.3 A MET 26 A O MET 15 1_555 B NA 52 F NA NA 1_555 A HOH 69 G O HOH 1_555 84.2 B ASP 37 B OD2 ASP 26 1_555 B NA 52 F NA NA 1_555 A HOH 69 G O HOH 1_555 152.0 B ASP 37 B OD1 ASP 26 1_555 B NA 52 F NA NA 1_555 A HOH 69 G O HOH 1_555 158.8 B HOH 62 H O HOH 1_555 B NA 52 F NA NA 1_555 A HOH 69 G O HOH 1_555 100.9 B HOH 64 H O HOH 1_555 B NA 52 F NA NA 1_555 A HOH 69 G O HOH 1_555 85.2 A LEU 40 A O LEU 29 1_555 A NA 52 D NA NA 1_555 A ASP 37 A O ASP 26 1_555 81.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 18 A N VAL 7 A O MET 27 A O MET 16 B N VAL 18 B N VAL 7 B O MET 27 B O MET 16 1 A NA 52 D NA 1 A GLY 12 A GLY 1 1 Y 1 A SER 13 A SER 2 1 Y 1 A PRO 14 A PRO 3 1 Y 1 A GLU 15 A GLU 4 1 Y 1 B GLY 12 B GLY 1 1 Y 1 B SER 13 B SER 2 1 Y 1 B PRO 14 B PRO 3 1 Y 1 A GLN 24 82.53 -2.77 38.800 -0.48 0.00 0.00 0.96 0.00 -0.48 0.953 0.918 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.26151 0.21282 0.21526 1.90 23.77 175 3605 4.6 96.97 5.437 0.148 RANDOM 1 THROUGHOUT SAD 0.175 0.80 0.80 1.40 MAXIMUM LIKELIHOOD MASK 1.90 23.77 16 423 4 0 403 0.014 0.021 412 1.584 1.938 558 5.328 5.000 49 48.557 25.238 21 17.483 15.000 70 15.208 15.000 2 0.100 0.200 61 0.006 0.021 320 0.897 1.500 259 1.683 2.000 420 2.688 3.000 153 4.484 4.500 138 0.325 0.337 1.950 15 247 20 90.97 32.4 1.90 100.0 3VHS 3816 0.063 1 21.3 5.5 97.6 0.384 1.90 1.93 3.3 187 1 3.5 89.5 data collection ADSC Quantum phasing SOLVE refinement REFMAC 5.5.0109 data reduction HKL-2000 data scaling HKL-2000 ATPase WRNIP1 Crystal structure of UBZ of human WRNIP1 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 4 N N 4 N N A HIS 31 A HIS 20 HELX_P A LEU 40 A LEU 29 1 1 10 B ALA 29 B ALA 18 HELX_P B LEU 36 B LEU 25 1 2 8 disulf 2.027 A CYS 39 A SG CYS 28 1_555 B CYS 39 B SG CYS 28 1_555 metalc 1.989 A HIS 35 A NE2 HIS 24 1_555 A ZN 51 C ZN ZN 1_555 metalc 2.011 A HIS 31 A NE2 HIS 20 1_555 B ZN 51 E ZN ZN 1_555 metalc 2.078 B HIS 35 B NE2 HIS 24 1_555 B ZN 51 E ZN ZN 1_555 metalc 2.090 A MET 26 A O MET 15 1_555 B NA 52 F NA NA 1_555 metalc 2.203 B CYS 23 B SG CYS 12 1_555 B ZN 51 E ZN ZN 1_555 metalc 2.247 B CYS 20 B SG CYS 9 1_555 B ZN 51 E ZN ZN 1_555 metalc 2.276 A LEU 40 A O LEU 29 1_555 A NA 52 D NA NA 1_555 metalc 2.309 A ASP 37 A O ASP 26 1_555 A NA 52 D NA NA 1_555 metalc 2.332 A CYS 20 A SG CYS 9 1_555 A ZN 51 C ZN ZN 1_555 metalc 2.352 A CYS 23 A SG CYS 12 1_555 A ZN 51 C ZN ZN 1_555 metalc 2.471 B ASP 37 B OD2 ASP 26 1_555 B NA 52 F NA NA 1_555 metalc 2.735 B ASP 37 B OD1 ASP 26 1_555 B NA 52 F NA NA 1_555 metalc 1.929 B NA 52 F NA NA 1_555 B HOH 62 H O HOH 1_555 metalc 2.279 A ZN 51 C ZN ZN 1_555 A HOH 61 G O HOH 1_555 metalc 2.282 B NA 52 F NA NA 1_555 B HOH 64 H O HOH 1_555 metalc 2.507 B NA 52 F NA NA 1_555 A HOH 69 G O HOH 1_555 METAL BINDING PROTEIN ZINC FINGER, UBIQUITIN-BINDING DOMAIN, UBIQUITIN BINDING, METAL BINDING PROTEIN WRIP1_HUMAN UNP 1 17 Q96S55 QVQCPVCQQMMPAAHINSHLDRCL 17 40 3VHS 17 40 Q96S55 A 1 6 29 17 40 3VHS 17 40 Q96S55 B 1 6 29 1 EXPRESSION TAG GLY 12 3VHS A Q96S55 UNP 1 1 EXPRESSION TAG SER 13 3VHS A Q96S55 UNP 2 1 EXPRESSION TAG PRO 14 3VHS A Q96S55 UNP 3 1 EXPRESSION TAG GLU 15 3VHS A Q96S55 UNP 4 1 EXPRESSION TAG PHE 16 3VHS A Q96S55 UNP 5 2 EXPRESSION TAG GLY 12 3VHS B Q96S55 UNP 1 2 EXPRESSION TAG SER 13 3VHS B Q96S55 UNP 2 2 EXPRESSION TAG PRO 14 3VHS B Q96S55 UNP 3 2 EXPRESSION TAG GLU 15 3VHS B Q96S55 UNP 4 2 EXPRESSION TAG PHE 16 3VHS B Q96S55 UNP 5 2 2 anti-parallel anti-parallel A GLN 17 A GLN 6 A GLN 19 A GLN 8 A MET 26 A MET 15 A PRO 28 A PRO 17 B GLN 17 B GLN 6 B GLN 19 B GLN 8 B MET 26 B MET 15 B PRO 28 B PRO 17 BINDING SITE FOR RESIDUE ZN A 51 Software 4 BINDING SITE FOR RESIDUE NA A 52 Software 6 BINDING SITE FOR RESIDUE ZN B 51 Software 4 BINDING SITE FOR RESIDUE NA B 52 Software 5 A CYS 20 A CYS 9 4 1_555 A CYS 23 A CYS 12 4 1_555 A HIS 35 A HIS 24 4 1_555 A HOH 61 G HOH 4 1_555 A ASP 37 A ASP 26 6 1_555 A ASP 37 A ASP 26 6 3_554 A LEU 40 A LEU 29 6 1_555 A LEU 40 A LEU 29 6 3_554 A HOH 72 G HOH 6 3_554 A HOH 72 G HOH 6 1_555 A HIS 31 A HIS 20 4 1_555 B CYS 20 B CYS 9 4 1_555 B CYS 23 B CYS 12 4 1_555 B HIS 35 B HIS 24 4 1_555 A MET 26 A MET 15 5 1_555 A HOH 69 G HOH 5 1_555 B ASP 37 B ASP 26 5 1_555 B HOH 62 H HOH 5 1_555 B HOH 64 H HOH 5 1_555 20 C 2 2 21