0.007210 0.000000 0.005588 0.000000 0.021306 0.000000 0.000000 0.000000 0.012767 0.00000 0.00000 0.00000 Gao, M. Li, D. Hu, Y. Zou, Q. Wang, D.-C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 127.78 90.00 138.700 46.936 99.100 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Plos One 1932-6203 7 e41871 e41871 10.1371/journal.pone.0041871 22860022 Crystal Structure of TNF-alpha-Inducing Protein from Helicobacter Pylori in Active Form Reveals the Intrinsic Molecular Flexibility for Unique DNA-Binding 2012 10.2210/pdb3vnc/pdb pdb_00003vnc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 90 1 CCD 2009-10-26 ADSC QUANTUM 315r Numerical link type Si(111) double crystal monochromator MAD M x-ray 1 0.97898 1.0 0.97917 1.0 0.96395 1.0 BL-17A Photon Factory 0.97898, 0.97917, 0.96395 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 19223.031 TIP-alpha Residues 25-192 2 man polymer 18.015 water 55 nat water Putative uncharacterized protein no no CTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSHIVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQK ITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDSVNYG DVKVPIAM CTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSHIVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQK ITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDSVNYG DVKVPIAM A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 26695 sample HP_0596 85962 Helicobacter pylori 562 Escherichia coli BL(DE3) PLASMID pET22b 1 3.32 62.90 VAPOR DIFFUSION, HANGING DROP 4 16% PEG3350, 80% Tacsimate, 2% 1,2-propanediol, 5% MPD, 5% Glycerol, pH 4, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 repository Initial release Data collection Database references 1 0 2012-10-03 1 1 2024-03-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession PDBJ Y PDBJ 2012-01-11 REL REL HOH water HOH 1 2 HOH HOH 201 A HOH 3 2 HOH HOH 202 A HOH 4 2 HOH HOH 203 A HOH 7 2 HOH HOH 204 A HOH 9 2 HOH HOH 205 A HOH 11 2 HOH HOH 206 A HOH 13 2 HOH HOH 207 A HOH 19 2 HOH HOH 208 A HOH 23 2 HOH HOH 209 A HOH 25 2 HOH HOH 210 A HOH 31 2 HOH HOH 211 A HOH 32 2 HOH HOH 212 A HOH 33 2 HOH HOH 213 A HOH 34 2 HOH HOH 214 A HOH 36 2 HOH HOH 215 A HOH 37 2 HOH HOH 216 A HOH 38 2 HOH HOH 217 A HOH 39 2 HOH HOH 218 A HOH 40 2 HOH HOH 219 A HOH 41 2 HOH HOH 220 A HOH 42 2 HOH HOH 221 A HOH 43 2 HOH HOH 222 A HOH 44 2 HOH HOH 223 A HOH 45 2 HOH HOH 224 A HOH 53 2 HOH HOH 225 A HOH 54 2 HOH HOH 226 A HOH 55 2 HOH HOH 227 A HOH 2 2 HOH HOH 201 B HOH 5 2 HOH HOH 202 B HOH 6 2 HOH HOH 203 B HOH 8 2 HOH HOH 204 B HOH 10 2 HOH HOH 205 B HOH 12 2 HOH HOH 206 B HOH 14 2 HOH HOH 207 B HOH 15 2 HOH HOH 208 B HOH 16 2 HOH HOH 209 B HOH 17 2 HOH HOH 210 B HOH 18 2 HOH HOH 211 B HOH 20 2 HOH HOH 212 B HOH 21 2 HOH HOH 213 B HOH 22 2 HOH HOH 214 B HOH 24 2 HOH HOH 215 B HOH 26 2 HOH HOH 216 B HOH 27 2 HOH HOH 217 B HOH 28 2 HOH HOH 218 B HOH 29 2 HOH HOH 219 B HOH 30 2 HOH HOH 220 B HOH 35 2 HOH HOH 221 B HOH 46 2 HOH HOH 222 B HOH 47 2 HOH HOH 223 B HOH 48 2 HOH HOH 224 B HOH 49 2 HOH HOH 225 B HOH 50 2 HOH HOH 226 B HOH 51 2 HOH HOH 227 B HOH 52 2 HOH HOH 228 B n 1 25 A n 2 26 A n 3 27 A n 4 28 A n 5 29 A n 6 30 A n 7 31 A n 8 32 A n 9 33 A ASN 34 n 10 ASN 34 A SER 35 n 11 SER 35 A PHE 36 n 12 PHE 36 A LEU 37 n 13 LEU 37 A GLN 38 n 14 GLN 38 A ASP 39 n 15 ASP 39 A VAL 40 n 16 VAL 40 A PRO 41 n 17 PRO 41 A TYR 42 n 18 TYR 42 A TRP 43 n 19 TRP 43 A MET 44 n 20 MET 44 A LEU 45 n 21 LEU 45 A GLN 46 n 22 GLN 46 A ASN 47 n 23 ASN 47 A ARG 48 n 24 ARG 48 A SER 49 n 25 SER 49 A GLU 50 n 26 GLU 50 A TYR 51 n 27 TYR 51 A ILE 52 n 28 ILE 52 A THR 53 n 29 THR 53 A GLN 54 n 30 GLN 54 A GLY 55 n 31 GLY 55 A VAL 56 n 32 VAL 56 A ASP 57 n 33 ASP 57 A SER 58 n 34 SER 58 A SER 59 n 35 SER 59 A HIS 60 n 36 HIS 60 A ILE 61 n 37 ILE 61 A VAL 62 n 38 VAL 62 A ASP 63 n 39 ASP 63 A GLY 64 n 40 GLY 64 A LYS 65 n 41 LYS 65 A LYS 66 n 42 LYS 66 A THR 67 n 43 THR 67 A GLU 68 n 44 GLU 68 A GLU 69 n 45 GLU 69 A ILE 70 n 46 ILE 70 A GLU 71 n 47 GLU 71 A LYS 72 n 48 LYS 72 A ILE 73 n 49 ILE 73 A ALA 74 n 50 ALA 74 A THR 75 n 51 THR 75 A LYS 76 n 52 LYS 76 A ARG 77 n 53 ARG 77 A ALA 78 n 54 ALA 78 A THR 79 n 55 THR 79 A ILE 80 n 56 ILE 80 A ARG 81 n 57 ARG 81 A VAL 82 n 58 VAL 82 A ALA 83 n 59 ALA 83 A GLN 84 n 60 GLN 84 A ASN 85 n 61 ASN 85 A ILE 86 n 62 ILE 86 A VAL 87 n 63 VAL 87 A HIS 88 n 64 HIS 88 A LYS 89 n 65 LYS 89 A LEU 90 n 66 LEU 90 A LYS 91 n 67 LYS 91 A GLU 92 n 68 GLU 92 A ALA 93 n 69 ALA 93 A TYR 94 n 70 TYR 94 A LEU 95 n 71 LEU 95 A SER 96 n 72 SER 96 A LYS 97 n 73 LYS 97 A THR 98 n 74 THR 98 A ASN 99 n 75 ASN 99 A ARG 100 n 76 ARG 100 A ILE 101 n 77 ILE 101 A LYS 102 n 78 LYS 102 A GLN 103 n 79 GLN 103 A LYS 104 n 80 LYS 104 A ILE 105 n 81 ILE 105 A THR 106 n 82 THR 106 A ASN 107 n 83 ASN 107 A GLU 108 n 84 GLU 108 A MET 109 n 85 MET 109 A PHE 110 n 86 PHE 110 A ILE 111 n 87 ILE 111 A GLN 112 n 88 GLN 112 A MET 113 n 89 MET 113 A THR 114 n 90 THR 114 A GLN 115 n 91 GLN 115 A PRO 116 n 92 PRO 116 A ILE 117 n 93 ILE 117 A TYR 118 n 94 TYR 118 A ASP 119 n 95 ASP 119 A SER 120 n 96 SER 120 A LEU 121 n 97 LEU 121 A MET 122 n 98 MET 122 A ASN 123 n 99 ASN 123 A VAL 124 n 100 VAL 124 A ASP 125 n 101 ASP 125 A ARG 126 n 102 ARG 126 A LEU 127 n 103 LEU 127 A GLY 128 n 104 GLY 128 A ILE 129 n 105 ILE 129 A TYR 130 n 106 TYR 130 A ILE 131 n 107 ILE 131 A ASN 132 n 108 ASN 132 A PRO 133 n 109 PRO 133 A ASN 134 n 110 ASN 134 A ASN 135 n 111 ASN 135 A GLU 136 n 112 GLU 136 A GLU 137 n 113 GLU 137 A VAL 138 n 114 VAL 138 A PHE 139 n 115 PHE 139 A ALA 140 n 116 ALA 140 A LEU 141 n 117 LEU 141 A VAL 142 n 118 VAL 142 A ARG 143 n 119 ARG 143 A ALA 144 n 120 ALA 144 A ARG 145 n 121 ARG 145 A GLY 146 n 122 GLY 146 A PHE 147 n 123 PHE 147 A ASP 148 n 124 ASP 148 A LYS 149 n 125 LYS 149 A ASP 150 n 126 ASP 150 A ALA 151 n 127 ALA 151 A LEU 152 n 128 LEU 152 A SER 153 n 129 SER 153 A GLU 154 n 130 GLU 154 A GLY 155 n 131 GLY 155 A LEU 156 n 132 LEU 156 A HIS 157 n 133 HIS 157 A LYS 158 n 134 LYS 158 A MET 159 n 135 MET 159 A SER 160 n 136 SER 160 A LEU 161 n 137 LEU 161 A ASP 162 n 138 ASP 162 A ASN 163 n 139 ASN 163 A GLN 164 n 140 GLN 164 A ALA 165 n 141 ALA 165 A VAL 166 n 142 VAL 166 A SER 167 n 143 SER 167 A ILE 168 n 144 ILE 168 A LEU 169 n 145 LEU 169 A VAL 170 n 146 VAL 170 A ALA 171 n 147 ALA 171 A LYS 172 n 148 LYS 172 A VAL 173 n 149 VAL 173 A GLU 174 n 150 GLU 174 A GLU 175 n 151 GLU 175 A ILE 176 n 152 ILE 176 A PHE 177 n 153 PHE 177 A LYS 178 n 154 LYS 178 A ASP 179 n 155 ASP 179 A SER 180 n 156 SER 180 A VAL 181 n 157 VAL 181 A n 158 182 A n 159 183 A n 160 184 A n 161 185 A n 162 186 A n 163 187 A n 164 188 A n 165 189 A n 166 190 A n 167 191 A n 168 192 A n 1 25 B n 2 26 B n 3 27 B n 4 28 B n 5 29 B n 6 30 B n 7 31 B n 8 32 B n 9 33 B n 10 34 B SER 35 n 11 SER 35 B PHE 36 n 12 PHE 36 B LEU 37 n 13 LEU 37 B GLN 38 n 14 GLN 38 B ASP 39 n 15 ASP 39 B VAL 40 n 16 VAL 40 B PRO 41 n 17 PRO 41 B TYR 42 n 18 TYR 42 B TRP 43 n 19 TRP 43 B MET 44 n 20 MET 44 B LEU 45 n 21 LEU 45 B GLN 46 n 22 GLN 46 B ASN 47 n 23 ASN 47 B ARG 48 n 24 ARG 48 B SER 49 n 25 SER 49 B GLU 50 n 26 GLU 50 B TYR 51 n 27 TYR 51 B ILE 52 n 28 ILE 52 B THR 53 n 29 THR 53 B GLN 54 n 30 GLN 54 B GLY 55 n 31 GLY 55 B VAL 56 n 32 VAL 56 B ASP 57 n 33 ASP 57 B SER 58 n 34 SER 58 B SER 59 n 35 SER 59 B HIS 60 n 36 HIS 60 B ILE 61 n 37 ILE 61 B VAL 62 n 38 VAL 62 B ASP 63 n 39 ASP 63 B GLY 64 n 40 GLY 64 B LYS 65 n 41 LYS 65 B LYS 66 n 42 LYS 66 B THR 67 n 43 THR 67 B GLU 68 n 44 GLU 68 B GLU 69 n 45 GLU 69 B ILE 70 n 46 ILE 70 B GLU 71 n 47 GLU 71 B LYS 72 n 48 LYS 72 B ILE 73 n 49 ILE 73 B ALA 74 n 50 ALA 74 B THR 75 n 51 THR 75 B LYS 76 n 52 LYS 76 B ARG 77 n 53 ARG 77 B ALA 78 n 54 ALA 78 B THR 79 n 55 THR 79 B ILE 80 n 56 ILE 80 B ARG 81 n 57 ARG 81 B VAL 82 n 58 VAL 82 B ALA 83 n 59 ALA 83 B GLN 84 n 60 GLN 84 B ASN 85 n 61 ASN 85 B ILE 86 n 62 ILE 86 B VAL 87 n 63 VAL 87 B HIS 88 n 64 HIS 88 B LYS 89 n 65 LYS 89 B LEU 90 n 66 LEU 90 B LYS 91 n 67 LYS 91 B GLU 92 n 68 GLU 92 B ALA 93 n 69 ALA 93 B TYR 94 n 70 TYR 94 B LEU 95 n 71 LEU 95 B SER 96 n 72 SER 96 B LYS 97 n 73 LYS 97 B THR 98 n 74 THR 98 B ASN 99 n 75 ASN 99 B ARG 100 n 76 ARG 100 B ILE 101 n 77 ILE 101 B LYS 102 n 78 LYS 102 B GLN 103 n 79 GLN 103 B LYS 104 n 80 LYS 104 B ILE 105 n 81 ILE 105 B THR 106 n 82 THR 106 B ASN 107 n 83 ASN 107 B GLU 108 n 84 GLU 108 B MET 109 n 85 MET 109 B PHE 110 n 86 PHE 110 B ILE 111 n 87 ILE 111 B GLN 112 n 88 GLN 112 B MET 113 n 89 MET 113 B THR 114 n 90 THR 114 B GLN 115 n 91 GLN 115 B PRO 116 n 92 PRO 116 B ILE 117 n 93 ILE 117 B TYR 118 n 94 TYR 118 B ASP 119 n 95 ASP 119 B SER 120 n 96 SER 120 B LEU 121 n 97 LEU 121 B MET 122 n 98 MET 122 B ASN 123 n 99 ASN 123 B VAL 124 n 100 VAL 124 B ASP 125 n 101 ASP 125 B ARG 126 n 102 ARG 126 B LEU 127 n 103 LEU 127 B GLY 128 n 104 GLY 128 B ILE 129 n 105 ILE 129 B TYR 130 n 106 TYR 130 B ILE 131 n 107 ILE 131 B ASN 132 n 108 ASN 132 B PRO 133 n 109 PRO 133 B ASN 134 n 110 ASN 134 B ASN 135 n 111 ASN 135 B GLU 136 n 112 GLU 136 B GLU 137 n 113 GLU 137 B VAL 138 n 114 VAL 138 B PHE 139 n 115 PHE 139 B ALA 140 n 116 ALA 140 B LEU 141 n 117 LEU 141 B VAL 142 n 118 VAL 142 B ARG 143 n 119 ARG 143 B ALA 144 n 120 ALA 144 B ARG 145 n 121 ARG 145 B GLY 146 n 122 GLY 146 B PHE 147 n 123 PHE 147 B ASP 148 n 124 ASP 148 B LYS 149 n 125 LYS 149 B ASP 150 n 126 ASP 150 B ALA 151 n 127 ALA 151 B LEU 152 n 128 LEU 152 B SER 153 n 129 SER 153 B GLU 154 n 130 GLU 154 B GLY 155 n 131 GLY 155 B LEU 156 n 132 LEU 156 B HIS 157 n 133 HIS 157 B LYS 158 n 134 LYS 158 B MET 159 n 135 MET 159 B SER 160 n 136 SER 160 B LEU 161 n 137 LEU 161 B ASP 162 n 138 ASP 162 B ASN 163 n 139 ASN 163 B GLN 164 n 140 GLN 164 B ALA 165 n 141 ALA 165 B VAL 166 n 142 VAL 166 B SER 167 n 143 SER 167 B ILE 168 n 144 ILE 168 B LEU 169 n 145 LEU 169 B VAL 170 n 146 VAL 170 B ALA 171 n 147 ALA 171 B LYS 172 n 148 LYS 172 B VAL 173 n 149 VAL 173 B GLU 174 n 150 GLU 174 B GLU 175 n 151 GLU 175 B ILE 176 n 152 ILE 176 B PHE 177 n 153 PHE 177 B LYS 178 n 154 LYS 178 B ASP 179 n 155 ASP 179 B SER 180 n 156 SER 180 B VAL 181 n 157 VAL 181 B n 158 182 B n 159 183 B n 160 184 B n 161 185 B n 162 186 B n 163 187 B n 164 188 B n 165 189 B n 166 190 B n 167 191 B n 168 192 B author_and_software_defined_assembly PISA 2 dimeric 2020 -2 15800 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASP 57 A N ASP 33 A O ALA 140 A O ALA 116 A O ARG 143 A O ARG 119 A N ASP 125 A N ASP 101 B N GLY 55 B N GLY 31 B O VAL 142 B O VAL 118 B O ARG 145 B O ARG 121 B N ASN 123 B N ASN 99 1 A CYS 25 A CYS 1 1 Y 1 A THR 26 A THR 2 1 Y 1 A CYS 27 A CYS 3 1 Y 1 A PRO 28 A PRO 4 1 Y 1 A ASN 29 A ASN 5 1 Y 1 A THR 30 A THR 6 1 Y 1 A SER 31 A SER 7 1 Y 1 A GLN 32 A GLN 8 1 Y 1 A ARG 33 A ARG 9 1 Y 1 A ASN 182 A ASN 158 1 Y 1 A TYR 183 A TYR 159 1 Y 1 A GLY 184 A GLY 160 1 Y 1 A ASP 185 A ASP 161 1 Y 1 A VAL 186 A VAL 162 1 Y 1 A LYS 187 A LYS 163 1 Y 1 A VAL 188 A VAL 164 1 Y 1 A PRO 189 A PRO 165 1 Y 1 A ILE 190 A ILE 166 1 Y 1 A ALA 191 A ALA 167 1 Y 1 A MET 192 A MET 168 1 Y 1 B CYS 25 B CYS 1 1 Y 1 B THR 26 B THR 2 1 Y 1 B CYS 27 B CYS 3 1 Y 1 B PRO 28 B PRO 4 1 Y 1 B ASN 29 B ASN 5 1 Y 1 B THR 30 B THR 6 1 Y 1 B SER 31 B SER 7 1 Y 1 B GLN 32 B GLN 8 1 Y 1 B ARG 33 B ARG 9 1 Y 1 B ASN 34 B ASN 10 1 Y 1 B ASN 182 B ASN 158 1 Y 1 B TYR 183 B TYR 159 1 Y 1 B GLY 184 B GLY 160 1 Y 1 B ASP 185 B ASP 161 1 Y 1 B VAL 186 B VAL 162 1 Y 1 B LYS 187 B LYS 163 1 Y 1 B VAL 188 B VAL 164 1 Y 1 B PRO 189 B PRO 165 1 Y 1 B ILE 190 B ILE 166 1 Y 1 B ALA 191 B ALA 167 1 Y 1 B MET 192 B MET 168 1 Y 1 A ASN 47 -107.01 78.91 1 A SER 49 -55.35 -0.89 1 A ILE 52 60.50 -53.08 1 A SER 160 89.05 45.33 1 B GLN 38 -75.08 -84.60 1 B ILE 52 54.58 -51.78 1 B ASN 135 -145.71 18.76 1 B SER 160 86.71 47.28 protein_rep.param protein.top water_rep.param water.top 48.7 12.88 0.00 11.46 -16.65 0.00 3.77 BULK SOLVENT MODEL USED 0.264 0.007 0.231 0.231 2.60 49.14 1527 15815 15054 10.1 95.1 RANDOM 2045408.21 0.000000 1 RESTRAINED THROUGHOUT 0.0 0.0 MAD Engh & Huber FLAT MODEL 58.6298 0.4 0.43 0.35 5.00 0.57 0.52 2.60 49.14 55 2437 0 0 2382 0.009 1.3 21.6 0.78 0.374 0.026 0.319 2.76 209 2013 2289 6 9.4 85.8 37.1 2.6 49.14 3VNC 15779 15054 0.0 0.0 0.102 0.102 1 17.7 7.2 95.4 0.374 2.6 2.74 4.7 2289 0.374 1 7.3 99.9 data collection ADSC Quantum phasing SOLVE refinement CNS 1.2 data reduction MOSFLM data scaling SCALA Crystal Structure of TIP-alpha N25 from Helicobacter Pylori in its natural dimeric form 1 N N 1 N N 2 N N 2 N N A PRO 41 A PRO 17 HELX_P A GLN 46 A GLN 22 5 1 6 A ASN 47 A ASN 23 HELX_P A TYR 51 A TYR 27 5 2 5 A LYS 66 A LYS 42 HELX_P A SER 96 A SER 72 1 3 31 A THR 106 A THR 82 HELX_P A SER 120 A SER 96 1 4 15 A ASP 148 A ASP 124 HELX_P A MET 159 A MET 135 1 5 12 A ASP 162 A ASP 138 HELX_P A ASP 179 A ASP 155 1 6 18 B TYR 42 B TYR 18 HELX_P B GLN 46 B GLN 22 5 7 5 B ASN 47 B ASN 23 HELX_P B ILE 52 B ILE 28 5 8 6 B LYS 66 B LYS 42 HELX_P B LEU 95 B LEU 71 1 9 30 B THR 106 B THR 82 HELX_P B MET 113 B MET 89 1 10 8 B MET 113 B MET 89 HELX_P B SER 120 B SER 96 1 11 8 B ASP 148 B ASP 124 HELX_P B MET 159 B MET 135 1 12 12 B ASP 162 B ASP 138 HELX_P B ASP 179 B ASP 155 1 13 18 DNA BINDING PROTEIN TNF-alpha-inducing Protein, HP0596, Homodimer, Carcinogenic Factor, DNA BINDING PROTEIN O25318_HELPY UNP 1 25 O25318 CTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSHIVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQK ITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDSVNYG DVKVPIAM 25 192 3VNC 25 192 O25318 A 1 1 168 25 192 3VNC 25 192 O25318 B 1 1 168 3 3 anti-parallel anti-parallel anti-parallel anti-parallel A GLN 54 A GLN 30 A SER 59 A SER 35 A GLU 137 A GLU 113 A PHE 147 A PHE 123 A LEU 121 A LEU 97 A ASN 132 A ASN 108 B GLN 54 B GLN 30 B SER 59 B SER 35 B VAL 138 B VAL 114 B PHE 147 B PHE 123 B LEU 121 B LEU 97 B ILE 131 B ILE 107 5 C 1 2 1