0.007210
0.000000
0.005588
0.000000
0.021306
0.000000
0.000000
0.000000
0.012767
0.00000
0.00000
0.00000
Gao, M.
Li, D.
Hu, Y.
Zou, Q.
Wang, D.-C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
127.78
90.00
138.700
46.936
99.100
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Plos One
1932-6203
7
e41871
e41871
10.1371/journal.pone.0041871
22860022
Crystal Structure of TNF-alpha-Inducing Protein from Helicobacter Pylori in Active Form Reveals the Intrinsic Molecular Flexibility for Unique DNA-Binding
2012
10.2210/pdb3vnc/pdb
pdb_00003vnc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
90
1
CCD
2009-10-26
ADSC QUANTUM 315r
Numerical link type Si(111) double crystal monochromator
MAD
M
x-ray
1
0.97898
1.0
0.97917
1.0
0.96395
1.0
BL-17A
Photon Factory
0.97898, 0.97917, 0.96395
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-17A
19223.031
TIP-alpha
Residues 25-192
2
man
polymer
18.015
water
55
nat
water
Putative uncharacterized protein
no
no
CTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSHIVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQK
ITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDSVNYG
DVKVPIAM
CTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSHIVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQK
ITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDSVNYG
DVKVPIAM
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
26695
sample
HP_0596
85962
Helicobacter pylori
562
Escherichia coli
BL(DE3)
PLASMID
pET22b
1
3.32
62.90
VAPOR DIFFUSION, HANGING DROP
4
16% PEG3350, 80% Tacsimate, 2% 1,2-propanediol, 5% MPD, 5% Glycerol, pH 4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Data collection
Database references
1
0
2012-10-03
1
1
2024-03-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
PDBJ
Y
PDBJ
2012-01-11
REL
REL
HOH
water
HOH
1
2
HOH
HOH
201
A
HOH
3
2
HOH
HOH
202
A
HOH
4
2
HOH
HOH
203
A
HOH
7
2
HOH
HOH
204
A
HOH
9
2
HOH
HOH
205
A
HOH
11
2
HOH
HOH
206
A
HOH
13
2
HOH
HOH
207
A
HOH
19
2
HOH
HOH
208
A
HOH
23
2
HOH
HOH
209
A
HOH
25
2
HOH
HOH
210
A
HOH
31
2
HOH
HOH
211
A
HOH
32
2
HOH
HOH
212
A
HOH
33
2
HOH
HOH
213
A
HOH
34
2
HOH
HOH
214
A
HOH
36
2
HOH
HOH
215
A
HOH
37
2
HOH
HOH
216
A
HOH
38
2
HOH
HOH
217
A
HOH
39
2
HOH
HOH
218
A
HOH
40
2
HOH
HOH
219
A
HOH
41
2
HOH
HOH
220
A
HOH
42
2
HOH
HOH
221
A
HOH
43
2
HOH
HOH
222
A
HOH
44
2
HOH
HOH
223
A
HOH
45
2
HOH
HOH
224
A
HOH
53
2
HOH
HOH
225
A
HOH
54
2
HOH
HOH
226
A
HOH
55
2
HOH
HOH
227
A
HOH
2
2
HOH
HOH
201
B
HOH
5
2
HOH
HOH
202
B
HOH
6
2
HOH
HOH
203
B
HOH
8
2
HOH
HOH
204
B
HOH
10
2
HOH
HOH
205
B
HOH
12
2
HOH
HOH
206
B
HOH
14
2
HOH
HOH
207
B
HOH
15
2
HOH
HOH
208
B
HOH
16
2
HOH
HOH
209
B
HOH
17
2
HOH
HOH
210
B
HOH
18
2
HOH
HOH
211
B
HOH
20
2
HOH
HOH
212
B
HOH
21
2
HOH
HOH
213
B
HOH
22
2
HOH
HOH
214
B
HOH
24
2
HOH
HOH
215
B
HOH
26
2
HOH
HOH
216
B
HOH
27
2
HOH
HOH
217
B
HOH
28
2
HOH
HOH
218
B
HOH
29
2
HOH
HOH
219
B
HOH
30
2
HOH
HOH
220
B
HOH
35
2
HOH
HOH
221
B
HOH
46
2
HOH
HOH
222
B
HOH
47
2
HOH
HOH
223
B
HOH
48
2
HOH
HOH
224
B
HOH
49
2
HOH
HOH
225
B
HOH
50
2
HOH
HOH
226
B
HOH
51
2
HOH
HOH
227
B
HOH
52
2
HOH
HOH
228
B
n
1
25
A
n
2
26
A
n
3
27
A
n
4
28
A
n
5
29
A
n
6
30
A
n
7
31
A
n
8
32
A
n
9
33
A
ASN
34
n
10
ASN
34
A
SER
35
n
11
SER
35
A
PHE
36
n
12
PHE
36
A
LEU
37
n
13
LEU
37
A
GLN
38
n
14
GLN
38
A
ASP
39
n
15
ASP
39
A
VAL
40
n
16
VAL
40
A
PRO
41
n
17
PRO
41
A
TYR
42
n
18
TYR
42
A
TRP
43
n
19
TRP
43
A
MET
44
n
20
MET
44
A
LEU
45
n
21
LEU
45
A
GLN
46
n
22
GLN
46
A
ASN
47
n
23
ASN
47
A
ARG
48
n
24
ARG
48
A
SER
49
n
25
SER
49
A
GLU
50
n
26
GLU
50
A
TYR
51
n
27
TYR
51
A
ILE
52
n
28
ILE
52
A
THR
53
n
29
THR
53
A
GLN
54
n
30
GLN
54
A
GLY
55
n
31
GLY
55
A
VAL
56
n
32
VAL
56
A
ASP
57
n
33
ASP
57
A
SER
58
n
34
SER
58
A
SER
59
n
35
SER
59
A
HIS
60
n
36
HIS
60
A
ILE
61
n
37
ILE
61
A
VAL
62
n
38
VAL
62
A
ASP
63
n
39
ASP
63
A
GLY
64
n
40
GLY
64
A
LYS
65
n
41
LYS
65
A
LYS
66
n
42
LYS
66
A
THR
67
n
43
THR
67
A
GLU
68
n
44
GLU
68
A
GLU
69
n
45
GLU
69
A
ILE
70
n
46
ILE
70
A
GLU
71
n
47
GLU
71
A
LYS
72
n
48
LYS
72
A
ILE
73
n
49
ILE
73
A
ALA
74
n
50
ALA
74
A
THR
75
n
51
THR
75
A
LYS
76
n
52
LYS
76
A
ARG
77
n
53
ARG
77
A
ALA
78
n
54
ALA
78
A
THR
79
n
55
THR
79
A
ILE
80
n
56
ILE
80
A
ARG
81
n
57
ARG
81
A
VAL
82
n
58
VAL
82
A
ALA
83
n
59
ALA
83
A
GLN
84
n
60
GLN
84
A
ASN
85
n
61
ASN
85
A
ILE
86
n
62
ILE
86
A
VAL
87
n
63
VAL
87
A
HIS
88
n
64
HIS
88
A
LYS
89
n
65
LYS
89
A
LEU
90
n
66
LEU
90
A
LYS
91
n
67
LYS
91
A
GLU
92
n
68
GLU
92
A
ALA
93
n
69
ALA
93
A
TYR
94
n
70
TYR
94
A
LEU
95
n
71
LEU
95
A
SER
96
n
72
SER
96
A
LYS
97
n
73
LYS
97
A
THR
98
n
74
THR
98
A
ASN
99
n
75
ASN
99
A
ARG
100
n
76
ARG
100
A
ILE
101
n
77
ILE
101
A
LYS
102
n
78
LYS
102
A
GLN
103
n
79
GLN
103
A
LYS
104
n
80
LYS
104
A
ILE
105
n
81
ILE
105
A
THR
106
n
82
THR
106
A
ASN
107
n
83
ASN
107
A
GLU
108
n
84
GLU
108
A
MET
109
n
85
MET
109
A
PHE
110
n
86
PHE
110
A
ILE
111
n
87
ILE
111
A
GLN
112
n
88
GLN
112
A
MET
113
n
89
MET
113
A
THR
114
n
90
THR
114
A
GLN
115
n
91
GLN
115
A
PRO
116
n
92
PRO
116
A
ILE
117
n
93
ILE
117
A
TYR
118
n
94
TYR
118
A
ASP
119
n
95
ASP
119
A
SER
120
n
96
SER
120
A
LEU
121
n
97
LEU
121
A
MET
122
n
98
MET
122
A
ASN
123
n
99
ASN
123
A
VAL
124
n
100
VAL
124
A
ASP
125
n
101
ASP
125
A
ARG
126
n
102
ARG
126
A
LEU
127
n
103
LEU
127
A
GLY
128
n
104
GLY
128
A
ILE
129
n
105
ILE
129
A
TYR
130
n
106
TYR
130
A
ILE
131
n
107
ILE
131
A
ASN
132
n
108
ASN
132
A
PRO
133
n
109
PRO
133
A
ASN
134
n
110
ASN
134
A
ASN
135
n
111
ASN
135
A
GLU
136
n
112
GLU
136
A
GLU
137
n
113
GLU
137
A
VAL
138
n
114
VAL
138
A
PHE
139
n
115
PHE
139
A
ALA
140
n
116
ALA
140
A
LEU
141
n
117
LEU
141
A
VAL
142
n
118
VAL
142
A
ARG
143
n
119
ARG
143
A
ALA
144
n
120
ALA
144
A
ARG
145
n
121
ARG
145
A
GLY
146
n
122
GLY
146
A
PHE
147
n
123
PHE
147
A
ASP
148
n
124
ASP
148
A
LYS
149
n
125
LYS
149
A
ASP
150
n
126
ASP
150
A
ALA
151
n
127
ALA
151
A
LEU
152
n
128
LEU
152
A
SER
153
n
129
SER
153
A
GLU
154
n
130
GLU
154
A
GLY
155
n
131
GLY
155
A
LEU
156
n
132
LEU
156
A
HIS
157
n
133
HIS
157
A
LYS
158
n
134
LYS
158
A
MET
159
n
135
MET
159
A
SER
160
n
136
SER
160
A
LEU
161
n
137
LEU
161
A
ASP
162
n
138
ASP
162
A
ASN
163
n
139
ASN
163
A
GLN
164
n
140
GLN
164
A
ALA
165
n
141
ALA
165
A
VAL
166
n
142
VAL
166
A
SER
167
n
143
SER
167
A
ILE
168
n
144
ILE
168
A
LEU
169
n
145
LEU
169
A
VAL
170
n
146
VAL
170
A
ALA
171
n
147
ALA
171
A
LYS
172
n
148
LYS
172
A
VAL
173
n
149
VAL
173
A
GLU
174
n
150
GLU
174
A
GLU
175
n
151
GLU
175
A
ILE
176
n
152
ILE
176
A
PHE
177
n
153
PHE
177
A
LYS
178
n
154
LYS
178
A
ASP
179
n
155
ASP
179
A
SER
180
n
156
SER
180
A
VAL
181
n
157
VAL
181
A
n
158
182
A
n
159
183
A
n
160
184
A
n
161
185
A
n
162
186
A
n
163
187
A
n
164
188
A
n
165
189
A
n
166
190
A
n
167
191
A
n
168
192
A
n
1
25
B
n
2
26
B
n
3
27
B
n
4
28
B
n
5
29
B
n
6
30
B
n
7
31
B
n
8
32
B
n
9
33
B
n
10
34
B
SER
35
n
11
SER
35
B
PHE
36
n
12
PHE
36
B
LEU
37
n
13
LEU
37
B
GLN
38
n
14
GLN
38
B
ASP
39
n
15
ASP
39
B
VAL
40
n
16
VAL
40
B
PRO
41
n
17
PRO
41
B
TYR
42
n
18
TYR
42
B
TRP
43
n
19
TRP
43
B
MET
44
n
20
MET
44
B
LEU
45
n
21
LEU
45
B
GLN
46
n
22
GLN
46
B
ASN
47
n
23
ASN
47
B
ARG
48
n
24
ARG
48
B
SER
49
n
25
SER
49
B
GLU
50
n
26
GLU
50
B
TYR
51
n
27
TYR
51
B
ILE
52
n
28
ILE
52
B
THR
53
n
29
THR
53
B
GLN
54
n
30
GLN
54
B
GLY
55
n
31
GLY
55
B
VAL
56
n
32
VAL
56
B
ASP
57
n
33
ASP
57
B
SER
58
n
34
SER
58
B
SER
59
n
35
SER
59
B
HIS
60
n
36
HIS
60
B
ILE
61
n
37
ILE
61
B
VAL
62
n
38
VAL
62
B
ASP
63
n
39
ASP
63
B
GLY
64
n
40
GLY
64
B
LYS
65
n
41
LYS
65
B
LYS
66
n
42
LYS
66
B
THR
67
n
43
THR
67
B
GLU
68
n
44
GLU
68
B
GLU
69
n
45
GLU
69
B
ILE
70
n
46
ILE
70
B
GLU
71
n
47
GLU
71
B
LYS
72
n
48
LYS
72
B
ILE
73
n
49
ILE
73
B
ALA
74
n
50
ALA
74
B
THR
75
n
51
THR
75
B
LYS
76
n
52
LYS
76
B
ARG
77
n
53
ARG
77
B
ALA
78
n
54
ALA
78
B
THR
79
n
55
THR
79
B
ILE
80
n
56
ILE
80
B
ARG
81
n
57
ARG
81
B
VAL
82
n
58
VAL
82
B
ALA
83
n
59
ALA
83
B
GLN
84
n
60
GLN
84
B
ASN
85
n
61
ASN
85
B
ILE
86
n
62
ILE
86
B
VAL
87
n
63
VAL
87
B
HIS
88
n
64
HIS
88
B
LYS
89
n
65
LYS
89
B
LEU
90
n
66
LEU
90
B
LYS
91
n
67
LYS
91
B
GLU
92
n
68
GLU
92
B
ALA
93
n
69
ALA
93
B
TYR
94
n
70
TYR
94
B
LEU
95
n
71
LEU
95
B
SER
96
n
72
SER
96
B
LYS
97
n
73
LYS
97
B
THR
98
n
74
THR
98
B
ASN
99
n
75
ASN
99
B
ARG
100
n
76
ARG
100
B
ILE
101
n
77
ILE
101
B
LYS
102
n
78
LYS
102
B
GLN
103
n
79
GLN
103
B
LYS
104
n
80
LYS
104
B
ILE
105
n
81
ILE
105
B
THR
106
n
82
THR
106
B
ASN
107
n
83
ASN
107
B
GLU
108
n
84
GLU
108
B
MET
109
n
85
MET
109
B
PHE
110
n
86
PHE
110
B
ILE
111
n
87
ILE
111
B
GLN
112
n
88
GLN
112
B
MET
113
n
89
MET
113
B
THR
114
n
90
THR
114
B
GLN
115
n
91
GLN
115
B
PRO
116
n
92
PRO
116
B
ILE
117
n
93
ILE
117
B
TYR
118
n
94
TYR
118
B
ASP
119
n
95
ASP
119
B
SER
120
n
96
SER
120
B
LEU
121
n
97
LEU
121
B
MET
122
n
98
MET
122
B
ASN
123
n
99
ASN
123
B
VAL
124
n
100
VAL
124
B
ASP
125
n
101
ASP
125
B
ARG
126
n
102
ARG
126
B
LEU
127
n
103
LEU
127
B
GLY
128
n
104
GLY
128
B
ILE
129
n
105
ILE
129
B
TYR
130
n
106
TYR
130
B
ILE
131
n
107
ILE
131
B
ASN
132
n
108
ASN
132
B
PRO
133
n
109
PRO
133
B
ASN
134
n
110
ASN
134
B
ASN
135
n
111
ASN
135
B
GLU
136
n
112
GLU
136
B
GLU
137
n
113
GLU
137
B
VAL
138
n
114
VAL
138
B
PHE
139
n
115
PHE
139
B
ALA
140
n
116
ALA
140
B
LEU
141
n
117
LEU
141
B
VAL
142
n
118
VAL
142
B
ARG
143
n
119
ARG
143
B
ALA
144
n
120
ALA
144
B
ARG
145
n
121
ARG
145
B
GLY
146
n
122
GLY
146
B
PHE
147
n
123
PHE
147
B
ASP
148
n
124
ASP
148
B
LYS
149
n
125
LYS
149
B
ASP
150
n
126
ASP
150
B
ALA
151
n
127
ALA
151
B
LEU
152
n
128
LEU
152
B
SER
153
n
129
SER
153
B
GLU
154
n
130
GLU
154
B
GLY
155
n
131
GLY
155
B
LEU
156
n
132
LEU
156
B
HIS
157
n
133
HIS
157
B
LYS
158
n
134
LYS
158
B
MET
159
n
135
MET
159
B
SER
160
n
136
SER
160
B
LEU
161
n
137
LEU
161
B
ASP
162
n
138
ASP
162
B
ASN
163
n
139
ASN
163
B
GLN
164
n
140
GLN
164
B
ALA
165
n
141
ALA
165
B
VAL
166
n
142
VAL
166
B
SER
167
n
143
SER
167
B
ILE
168
n
144
ILE
168
B
LEU
169
n
145
LEU
169
B
VAL
170
n
146
VAL
170
B
ALA
171
n
147
ALA
171
B
LYS
172
n
148
LYS
172
B
VAL
173
n
149
VAL
173
B
GLU
174
n
150
GLU
174
B
GLU
175
n
151
GLU
175
B
ILE
176
n
152
ILE
176
B
PHE
177
n
153
PHE
177
B
LYS
178
n
154
LYS
178
B
ASP
179
n
155
ASP
179
B
SER
180
n
156
SER
180
B
VAL
181
n
157
VAL
181
B
n
158
182
B
n
159
183
B
n
160
184
B
n
161
185
B
n
162
186
B
n
163
187
B
n
164
188
B
n
165
189
B
n
166
190
B
n
167
191
B
n
168
192
B
author_and_software_defined_assembly
PISA
2
dimeric
2020
-2
15800
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
57
A
N
ASP
33
A
O
ALA
140
A
O
ALA
116
A
O
ARG
143
A
O
ARG
119
A
N
ASP
125
A
N
ASP
101
B
N
GLY
55
B
N
GLY
31
B
O
VAL
142
B
O
VAL
118
B
O
ARG
145
B
O
ARG
121
B
N
ASN
123
B
N
ASN
99
1
A
CYS
25
A
CYS
1
1
Y
1
A
THR
26
A
THR
2
1
Y
1
A
CYS
27
A
CYS
3
1
Y
1
A
PRO
28
A
PRO
4
1
Y
1
A
ASN
29
A
ASN
5
1
Y
1
A
THR
30
A
THR
6
1
Y
1
A
SER
31
A
SER
7
1
Y
1
A
GLN
32
A
GLN
8
1
Y
1
A
ARG
33
A
ARG
9
1
Y
1
A
ASN
182
A
ASN
158
1
Y
1
A
TYR
183
A
TYR
159
1
Y
1
A
GLY
184
A
GLY
160
1
Y
1
A
ASP
185
A
ASP
161
1
Y
1
A
VAL
186
A
VAL
162
1
Y
1
A
LYS
187
A
LYS
163
1
Y
1
A
VAL
188
A
VAL
164
1
Y
1
A
PRO
189
A
PRO
165
1
Y
1
A
ILE
190
A
ILE
166
1
Y
1
A
ALA
191
A
ALA
167
1
Y
1
A
MET
192
A
MET
168
1
Y
1
B
CYS
25
B
CYS
1
1
Y
1
B
THR
26
B
THR
2
1
Y
1
B
CYS
27
B
CYS
3
1
Y
1
B
PRO
28
B
PRO
4
1
Y
1
B
ASN
29
B
ASN
5
1
Y
1
B
THR
30
B
THR
6
1
Y
1
B
SER
31
B
SER
7
1
Y
1
B
GLN
32
B
GLN
8
1
Y
1
B
ARG
33
B
ARG
9
1
Y
1
B
ASN
34
B
ASN
10
1
Y
1
B
ASN
182
B
ASN
158
1
Y
1
B
TYR
183
B
TYR
159
1
Y
1
B
GLY
184
B
GLY
160
1
Y
1
B
ASP
185
B
ASP
161
1
Y
1
B
VAL
186
B
VAL
162
1
Y
1
B
LYS
187
B
LYS
163
1
Y
1
B
VAL
188
B
VAL
164
1
Y
1
B
PRO
189
B
PRO
165
1
Y
1
B
ILE
190
B
ILE
166
1
Y
1
B
ALA
191
B
ALA
167
1
Y
1
B
MET
192
B
MET
168
1
Y
1
A
ASN
47
-107.01
78.91
1
A
SER
49
-55.35
-0.89
1
A
ILE
52
60.50
-53.08
1
A
SER
160
89.05
45.33
1
B
GLN
38
-75.08
-84.60
1
B
ILE
52
54.58
-51.78
1
B
ASN
135
-145.71
18.76
1
B
SER
160
86.71
47.28
protein_rep.param
protein.top
water_rep.param
water.top
48.7
12.88
0.00
11.46
-16.65
0.00
3.77
BULK SOLVENT MODEL USED
0.264
0.007
0.231
0.231
2.60
49.14
1527
15815
15054
10.1
95.1
RANDOM
2045408.21
0.000000
1
RESTRAINED
THROUGHOUT
0.0
0.0
MAD
Engh & Huber
FLAT MODEL
58.6298
0.4
0.43
0.35
5.00
0.57
0.52
2.60
49.14
55
2437
0
0
2382
0.009
1.3
21.6
0.78
0.374
0.026
0.319
2.76
209
2013
2289
6
9.4
85.8
37.1
2.6
49.14
3VNC
15779
15054
0.0
0.0
0.102
0.102
1
17.7
7.2
95.4
0.374
2.6
2.74
4.7
2289
0.374
1
7.3
99.9
data collection
ADSC
Quantum
phasing
SOLVE
refinement
CNS
1.2
data reduction
MOSFLM
data scaling
SCALA
Crystal Structure of TIP-alpha N25 from Helicobacter Pylori in its natural dimeric form
1
N
N
1
N
N
2
N
N
2
N
N
A
PRO
41
A
PRO
17
HELX_P
A
GLN
46
A
GLN
22
5
1
6
A
ASN
47
A
ASN
23
HELX_P
A
TYR
51
A
TYR
27
5
2
5
A
LYS
66
A
LYS
42
HELX_P
A
SER
96
A
SER
72
1
3
31
A
THR
106
A
THR
82
HELX_P
A
SER
120
A
SER
96
1
4
15
A
ASP
148
A
ASP
124
HELX_P
A
MET
159
A
MET
135
1
5
12
A
ASP
162
A
ASP
138
HELX_P
A
ASP
179
A
ASP
155
1
6
18
B
TYR
42
B
TYR
18
HELX_P
B
GLN
46
B
GLN
22
5
7
5
B
ASN
47
B
ASN
23
HELX_P
B
ILE
52
B
ILE
28
5
8
6
B
LYS
66
B
LYS
42
HELX_P
B
LEU
95
B
LEU
71
1
9
30
B
THR
106
B
THR
82
HELX_P
B
MET
113
B
MET
89
1
10
8
B
MET
113
B
MET
89
HELX_P
B
SER
120
B
SER
96
1
11
8
B
ASP
148
B
ASP
124
HELX_P
B
MET
159
B
MET
135
1
12
12
B
ASP
162
B
ASP
138
HELX_P
B
ASP
179
B
ASP
155
1
13
18
DNA BINDING PROTEIN
TNF-alpha-inducing Protein, HP0596, Homodimer, Carcinogenic Factor, DNA BINDING PROTEIN
O25318_HELPY
UNP
1
25
O25318
CTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSHIVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQK
ITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDSVNYG
DVKVPIAM
25
192
3VNC
25
192
O25318
A
1
1
168
25
192
3VNC
25
192
O25318
B
1
1
168
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
54
A
GLN
30
A
SER
59
A
SER
35
A
GLU
137
A
GLU
113
A
PHE
147
A
PHE
123
A
LEU
121
A
LEU
97
A
ASN
132
A
ASN
108
B
GLN
54
B
GLN
30
B
SER
59
B
SER
35
B
VAL
138
B
VAL
114
B
PHE
147
B
PHE
123
B
LEU
121
B
LEU
97
B
ILE
131
B
ILE
107
5
C 1 2 1