0.010578
0.006107
0.000000
-0.000000
0.012214
0.000000
0.000000
-0.000000
0.008849
0.000000
0.000000
0.000000
Fujishiro, T.
Shoji, O.
Sugimoto, H.
Shiro, Y.
Watanabe, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
94.539
94.539
113.004
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
C
Y
141
N
C
Y
142
N
C
Y
143
N
C
Y
144
N
C
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
Y
175
N
N
N
176
N
N
Y
177
N
N
N
178
N
N
N
179
N
FE
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
S
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
N
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
S
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
C
N
330
S
C
N
331
N
O
N
332
N
C
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
N
392
N
O
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
R
C
N
406
N
O
N
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
N
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
N
456
N
O
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
N
N
470
S
C
N
471
N
C
N
472
N
O
N
473
N
C
N
474
N
C
N
475
N
C
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
Y
141
N
doub
Y
142
N
sing
Y
143
N
sing
N
144
N
sing
Y
145
N
doub
N
146
N
sing
Y
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
sing
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
Y
222
N
sing
Y
223
N
doub
Y
224
N
doub
N
225
N
sing
Y
226
N
sing
N
227
N
sing
Y
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
Y
425
N
sing
Y
426
N
sing
N
427
N
sing
Y
428
N
sing
Y
429
N
doub
N
430
N
sing
Y
431
N
doub
N
432
N
sing
Y
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
Y
448
N
doub
Y
449
N
sing
Y
450
N
sing
N
451
N
sing
Y
452
N
doub
N
453
N
sing
Y
454
N
doub
N
455
N
sing
Y
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
doub
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
US
Catalysis Science And Technology
2044-4753
6
5806
5811
10.1039/C6CY00630B
A substrate-binding-state mimic of H2O2-dependent cytochrome P450 produced by one-point mutagenesis and peroxygenation of non-native substrates
2016
10.2210/pdb3vno/pdb
pdb_00003vno
100
1
CCD
2010-11-24
RIGAKU SATURN A200
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
BL26B1
SPring-8
1.000
SYNCHROTRON
SPRING-8 BEAMLINE BL26B1
45597.766
Fatty acid alpha-hydroxylase
1.11.2.4
Residues 9-415
R241E
1
man
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
1
syn
non-polymer
18.015
water
81
nat
water
Cytochrome P450SP alpha, CYP152B1
no
no
GPDETLSLLADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAEIFYDTTRFEREGAMPVAIQKTLLGQGGVQGLDG
ETHRHRKQMFMGLMTPERVRALAQLFEAEWRRAVPGWTRKGEIVFYDELHEPLTRAVCAWAGVPLPDDEAGNRAGELRAL
FDAAGSASPRHLWSRLARRRVDAWAKRIIEGIRAGSIGSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLEPTVAIAV
YITFVAHALQTCSGIRAALVQQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWAD
PQEFRPERFRAWDEDSFNFIPQGGGDHYLGHRCPGEWIVLAIMKVAAHLLVNAMRYDVPDQDLSIDFARLPALPKSGFVM
RNVHIGG
GPDETLSLLADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAEIFYDTTRFEREGAMPVAIQKTLLGQGGVQGLDG
ETHRHRKQMFMGLMTPERVRALAQLFEAEWRRAVPGWTRKGEIVFYDELHEPLTRAVCAWAGVPLPDDEAGNRAGELRAL
FDAAGSASPRHLWSRLARRRVDAWAKRIIEGIRAGSIGSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLEPTVAIAV
YITFVAHALQTCSGIRAALVQQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWAD
PQEFRPERFRAWDEDSFNFIPQGGGDHYLGHRCPGEWIVLAIMKVAAHLLVNAMRYDVPDQDLSIDFARLPALPKSGFVM
RNVHIGG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
13689
Sphingomonas paucimobilis
562
Escherichia coli
BL21
plasmid
pGEX-AX2
1
3.20
61.53
0.294
VAPOR DIFFUSION, SITTING DROP
7.0
50mM HEPES, 17.5% MPD, 25mM MES, 10% glycerol, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-02-06
1
1
2017-05-10
1
2
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2012-01-17
REL
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
HOH
water
3AWM
PDB
experimental model
HEM
501
2
HEM
HEM
501
A
MPD
601
3
MPD
MPD
502
A
HOH
1
4
HOH
HOH
601
A
HOH
2
4
HOH
HOH
602
A
HOH
3
4
HOH
HOH
603
A
HOH
4
4
HOH
HOH
604
A
HOH
5
4
HOH
HOH
605
A
HOH
6
4
HOH
HOH
606
A
HOH
7
4
HOH
HOH
607
A
HOH
8
4
HOH
HOH
608
A
HOH
9
4
HOH
HOH
609
A
HOH
10
4
HOH
HOH
610
A
HOH
11
4
HOH
HOH
611
A
HOH
12
4
HOH
HOH
612
A
HOH
13
4
HOH
HOH
613
A
HOH
14
4
HOH
HOH
614
A
HOH
15
4
HOH
HOH
615
A
HOH
16
4
HOH
HOH
616
A
HOH
17
4
HOH
HOH
617
A
HOH
18
4
HOH
HOH
618
A
HOH
19
4
HOH
HOH
619
A
HOH
20
4
HOH
HOH
620
A
HOH
21
4
HOH
HOH
621
A
HOH
22
4
HOH
HOH
622
A
HOH
23
4
HOH
HOH
623
A
HOH
24
4
HOH
HOH
624
A
HOH
25
4
HOH
HOH
625
A
HOH
26
4
HOH
HOH
626
A
HOH
27
4
HOH
HOH
627
A
HOH
28
4
HOH
HOH
628
A
HOH
29
4
HOH
HOH
629
A
HOH
30
4
HOH
HOH
630
A
HOH
31
4
HOH
HOH
631
A
HOH
32
4
HOH
HOH
632
A
HOH
33
4
HOH
HOH
633
A
HOH
34
4
HOH
HOH
634
A
HOH
35
4
HOH
HOH
635
A
HOH
36
4
HOH
HOH
636
A
HOH
37
4
HOH
HOH
637
A
HOH
38
4
HOH
HOH
638
A
HOH
39
4
HOH
HOH
639
A
HOH
40
4
HOH
HOH
640
A
HOH
41
4
HOH
HOH
641
A
HOH
42
4
HOH
HOH
642
A
HOH
43
4
HOH
HOH
643
A
HOH
44
4
HOH
HOH
644
A
HOH
45
4
HOH
HOH
645
A
HOH
46
4
HOH
HOH
646
A
HOH
47
4
HOH
HOH
647
A
HOH
48
4
HOH
HOH
648
A
HOH
49
4
HOH
HOH
649
A
HOH
50
4
HOH
HOH
650
A
HOH
51
4
HOH
HOH
651
A
HOH
52
4
HOH
HOH
652
A
HOH
53
4
HOH
HOH
653
A
HOH
54
4
HOH
HOH
654
A
HOH
55
4
HOH
HOH
655
A
HOH
56
4
HOH
HOH
656
A
HOH
57
4
HOH
HOH
657
A
HOH
58
4
HOH
HOH
658
A
HOH
59
4
HOH
HOH
659
A
HOH
60
4
HOH
HOH
660
A
HOH
61
4
HOH
HOH
661
A
HOH
62
4
HOH
HOH
662
A
HOH
63
4
HOH
HOH
663
A
HOH
64
4
HOH
HOH
664
A
HOH
65
4
HOH
HOH
665
A
HOH
66
4
HOH
HOH
666
A
HOH
67
4
HOH
HOH
667
A
HOH
68
4
HOH
HOH
668
A
HOH
69
4
HOH
HOH
669
A
HOH
70
4
HOH
HOH
670
A
HOH
71
4
HOH
HOH
671
A
HOH
72
4
HOH
HOH
672
A
HOH
73
4
HOH
HOH
673
A
HOH
74
4
HOH
HOH
674
A
HOH
75
4
HOH
HOH
675
A
HOH
76
4
HOH
HOH
676
A
HOH
77
4
HOH
HOH
677
A
HOH
78
4
HOH
HOH
678
A
HOH
79
4
HOH
HOH
679
A
HOH
80
4
HOH
HOH
680
A
HOH
81
4
HOH
HOH
681
A
2.170
2.170
19.790
19.790
GLY
9
n
1
GLY
9
A
PRO
10
n
2
PRO
10
A
ASP
11
n
3
ASP
11
A
GLU
12
n
4
GLU
12
A
THR
13
n
5
THR
13
A
LEU
14
n
6
LEU
14
A
SER
15
n
7
SER
15
A
LEU
16
n
8
LEU
16
A
LEU
17
n
9
LEU
17
A
ALA
18
n
10
ALA
18
A
ASP
19
n
11
ASP
19
A
PRO
20
n
12
PRO
20
A
TYR
21
n
13
TYR
21
A
ARG
22
n
14
ARG
22
A
PHE
23
n
15
PHE
23
A
ILE
24
n
16
ILE
24
A
SER
25
n
17
SER
25
A
ARG
26
n
18
ARG
26
A
GLN
27
n
19
GLN
27
A
CYS
28
n
20
CYS
28
A
GLN
29
n
21
GLN
29
A
ARG
30
n
22
ARG
30
A
LEU
31
n
23
LEU
31
A
GLY
32
n
24
GLY
32
A
ALA
33
n
25
ALA
33
A
ASN
34
n
26
ASN
34
A
ALA
35
n
27
ALA
35
A
PHE
36
n
28
PHE
36
A
GLU
37
n
29
GLU
37
A
SER
38
n
30
SER
38
A
ARG
39
n
31
ARG
39
A
PHE
40
n
32
PHE
40
A
LEU
41
n
33
LEU
41
A
LEU
42
n
34
LEU
42
A
LYS
43
n
35
LYS
43
A
LYS
44
n
36
LYS
44
A
THR
45
n
37
THR
45
A
ASN
46
n
38
ASN
46
A
CYS
47
n
39
CYS
47
A
LEU
48
n
40
LEU
48
A
LYS
49
n
41
LYS
49
A
GLY
50
n
42
GLY
50
A
ALA
51
n
43
ALA
51
A
LYS
52
n
44
LYS
52
A
ALA
53
n
45
ALA
53
A
ALA
54
n
46
ALA
54
A
GLU
55
n
47
GLU
55
A
ILE
56
n
48
ILE
56
A
PHE
57
n
49
PHE
57
A
TYR
58
n
50
TYR
58
A
ASP
59
n
51
ASP
59
A
THR
60
n
52
THR
60
A
THR
61
n
53
THR
61
A
ARG
62
n
54
ARG
62
A
PHE
63
n
55
PHE
63
A
GLU
64
n
56
GLU
64
A
ARG
65
n
57
ARG
65
A
GLU
66
n
58
GLU
66
A
GLY
67
n
59
GLY
67
A
ALA
68
n
60
ALA
68
A
MET
69
n
61
MET
69
A
PRO
70
n
62
PRO
70
A
VAL
71
n
63
VAL
71
A
ALA
72
n
64
ALA
72
A
ILE
73
n
65
ILE
73
A
GLN
74
n
66
GLN
74
A
LYS
75
n
67
LYS
75
A
THR
76
n
68
THR
76
A
LEU
77
n
69
LEU
77
A
LEU
78
n
70
LEU
78
A
GLY
79
n
71
GLY
79
A
GLN
80
n
72
GLN
80
A
GLY
81
n
73
GLY
81
A
GLY
82
n
74
GLY
82
A
VAL
83
n
75
VAL
83
A
GLN
84
n
76
GLN
84
A
GLY
85
n
77
GLY
85
A
LEU
86
n
78
LEU
86
A
ASP
87
n
79
ASP
87
A
GLY
88
n
80
GLY
88
A
GLU
89
n
81
GLU
89
A
THR
90
n
82
THR
90
A
HIS
91
n
83
HIS
91
A
ARG
92
n
84
ARG
92
A
HIS
93
n
85
HIS
93
A
ARG
94
n
86
ARG
94
A
LYS
95
n
87
LYS
95
A
GLN
96
n
88
GLN
96
A
MET
97
n
89
MET
97
A
PHE
98
n
90
PHE
98
A
MET
99
n
91
MET
99
A
GLY
100
n
92
GLY
100
A
LEU
101
n
93
LEU
101
A
MET
102
n
94
MET
102
A
THR
103
n
95
THR
103
A
PRO
104
n
96
PRO
104
A
GLU
105
n
97
GLU
105
A
ARG
106
n
98
ARG
106
A
VAL
107
n
99
VAL
107
A
ARG
108
n
100
ARG
108
A
ALA
109
n
101
ALA
109
A
LEU
110
n
102
LEU
110
A
ALA
111
n
103
ALA
111
A
GLN
112
n
104
GLN
112
A
LEU
113
n
105
LEU
113
A
PHE
114
n
106
PHE
114
A
GLU
115
n
107
GLU
115
A
ALA
116
n
108
ALA
116
A
GLU
117
n
109
GLU
117
A
TRP
118
n
110
TRP
118
A
ARG
119
n
111
ARG
119
A
ARG
120
n
112
ARG
120
A
ALA
121
n
113
ALA
121
A
VAL
122
n
114
VAL
122
A
PRO
123
n
115
PRO
123
A
GLY
124
n
116
GLY
124
A
TRP
125
n
117
TRP
125
A
THR
126
n
118
THR
126
A
ARG
127
n
119
ARG
127
A
LYS
128
n
120
LYS
128
A
GLY
129
n
121
GLY
129
A
GLU
130
n
122
GLU
130
A
ILE
131
n
123
ILE
131
A
VAL
132
n
124
VAL
132
A
PHE
133
n
125
PHE
133
A
TYR
134
n
126
TYR
134
A
ASP
135
n
127
ASP
135
A
GLU
136
n
128
GLU
136
A
LEU
137
n
129
LEU
137
A
HIS
138
n
130
HIS
138
A
GLU
139
n
131
GLU
139
A
PRO
140
n
132
PRO
140
A
LEU
141
n
133
LEU
141
A
THR
142
n
134
THR
142
A
ARG
143
n
135
ARG
143
A
ALA
144
n
136
ALA
144
A
VAL
145
n
137
VAL
145
A
CYS
146
n
138
CYS
146
A
ALA
147
n
139
ALA
147
A
TRP
148
n
140
TRP
148
A
ALA
149
n
141
ALA
149
A
GLY
150
n
142
GLY
150
A
VAL
151
n
143
VAL
151
A
PRO
152
n
144
PRO
152
A
LEU
153
n
145
LEU
153
A
PRO
154
n
146
PRO
154
A
ASP
155
n
147
ASP
155
A
ASP
156
n
148
ASP
156
A
GLU
157
n
149
GLU
157
A
ALA
158
n
150
ALA
158
A
GLY
159
n
151
GLY
159
A
ASN
160
n
152
ASN
160
A
ARG
161
n
153
ARG
161
A
ALA
162
n
154
ALA
162
A
GLY
163
n
155
GLY
163
A
GLU
164
n
156
GLU
164
A
LEU
165
n
157
LEU
165
A
ARG
166
n
158
ARG
166
A
ALA
167
n
159
ALA
167
A
LEU
168
n
160
LEU
168
A
PHE
169
n
161
PHE
169
A
ASP
170
n
162
ASP
170
A
ALA
171
n
163
ALA
171
A
ALA
172
n
164
ALA
172
A
GLY
173
n
165
GLY
173
A
SER
174
n
166
SER
174
A
ALA
175
n
167
ALA
175
A
SER
176
n
168
SER
176
A
PRO
177
n
169
PRO
177
A
ARG
178
n
170
ARG
178
A
HIS
179
n
171
HIS
179
A
LEU
180
n
172
LEU
180
A
TRP
181
n
173
TRP
181
A
SER
182
n
174
SER
182
A
ARG
183
n
175
ARG
183
A
LEU
184
n
176
LEU
184
A
ALA
185
n
177
ALA
185
A
ARG
186
n
178
ARG
186
A
ARG
187
n
179
ARG
187
A
ARG
188
n
180
ARG
188
A
VAL
189
n
181
VAL
189
A
ASP
190
n
182
ASP
190
A
ALA
191
n
183
ALA
191
A
TRP
192
n
184
TRP
192
A
ALA
193
n
185
ALA
193
A
LYS
194
n
186
LYS
194
A
ARG
195
n
187
ARG
195
A
ILE
196
n
188
ILE
196
A
ILE
197
n
189
ILE
197
A
GLU
198
n
190
GLU
198
A
GLY
199
n
191
GLY
199
A
ILE
200
n
192
ILE
200
A
ARG
201
n
193
ARG
201
A
ALA
202
n
194
ALA
202
A
GLY
203
n
195
GLY
203
A
SER
204
n
196
SER
204
A
ILE
205
n
197
ILE
205
A
GLY
206
n
198
GLY
206
A
SER
207
n
199
SER
207
A
GLY
208
n
200
GLY
208
A
SER
209
n
201
SER
209
A
GLY
210
n
202
GLY
210
A
THR
211
n
203
THR
211
A
ALA
212
n
204
ALA
212
A
ALA
213
n
205
ALA
213
A
TYR
214
n
206
TYR
214
A
ALA
215
n
207
ALA
215
A
ILE
216
n
208
ILE
216
A
ALA
217
n
209
ALA
217
A
TRP
218
n
210
TRP
218
A
HIS
219
n
211
HIS
219
A
ARG
220
n
212
ARG
220
A
ASP
221
n
213
ASP
221
A
ARG
222
n
214
ARG
222
A
HIS
223
n
215
HIS
223
A
ASP
224
n
216
ASP
224
A
ASP
225
n
217
ASP
225
A
LEU
226
n
218
LEU
226
A
LEU
227
n
219
LEU
227
A
SER
228
n
220
SER
228
A
PRO
229
n
221
PRO
229
A
HIS
230
n
222
HIS
230
A
VAL
231
n
223
VAL
231
A
ALA
232
n
224
ALA
232
A
ALA
233
n
225
ALA
233
A
VAL
234
n
226
VAL
234
A
GLU
235
n
227
GLU
235
A
LEU
236
n
228
LEU
236
A
VAL
237
n
229
VAL
237
A
ASN
238
n
230
ASN
238
A
VAL
239
n
231
VAL
239
A
LEU
240
n
232
LEU
240
A
GLU
241
n
233
GLU
241
A
PRO
242
n
234
PRO
242
A
THR
243
n
235
THR
243
A
VAL
244
n
236
VAL
244
A
ALA
245
n
237
ALA
245
A
ILE
246
n
238
ILE
246
A
ALA
247
n
239
ALA
247
A
VAL
248
n
240
VAL
248
A
TYR
249
n
241
TYR
249
A
ILE
250
n
242
ILE
250
A
THR
251
n
243
THR
251
A
PHE
252
n
244
PHE
252
A
VAL
253
n
245
VAL
253
A
ALA
254
n
246
ALA
254
A
HIS
255
n
247
HIS
255
A
ALA
256
n
248
ALA
256
A
LEU
257
n
249
LEU
257
A
GLN
258
n
250
GLN
258
A
THR
259
n
251
THR
259
A
CYS
260
n
252
CYS
260
A
SER
261
n
253
SER
261
A
GLY
262
n
254
GLY
262
A
ILE
263
n
255
ILE
263
A
ARG
264
n
256
ARG
264
A
ALA
265
n
257
ALA
265
A
ALA
266
n
258
ALA
266
A
LEU
267
n
259
LEU
267
A
VAL
268
n
260
VAL
268
A
GLN
269
n
261
GLN
269
A
GLN
270
n
262
GLN
270
A
PRO
271
n
263
PRO
271
A
ASP
272
n
264
ASP
272
A
TYR
273
n
265
TYR
273
A
ALA
274
n
266
ALA
274
A
GLU
275
n
267
GLU
275
A
LEU
276
n
268
LEU
276
A
PHE
277
n
269
PHE
277
A
VAL
278
n
270
VAL
278
A
GLN
279
n
271
GLN
279
A
GLU
280
n
272
GLU
280
A
VAL
281
n
273
VAL
281
A
ARG
282
n
274
ARG
282
A
ARG
283
n
275
ARG
283
A
PHE
284
n
276
PHE
284
A
TYR
285
n
277
TYR
285
A
PRO
286
n
278
PRO
286
A
PHE
287
n
279
PHE
287
A
PHE
288
n
280
PHE
288
A
PRO
289
n
281
PRO
289
A
ALA
290
n
282
ALA
290
A
VAL
291
n
283
VAL
291
A
VAL
292
n
284
VAL
292
A
ALA
293
n
285
ALA
293
A
ARG
294
n
286
ARG
294
A
ALA
295
n
287
ALA
295
A
SER
296
n
288
SER
296
A
GLN
297
n
289
GLN
297
A
ASP
298
n
290
ASP
298
A
PHE
299
n
291
PHE
299
A
GLU
300
n
292
GLU
300
A
TRP
301
n
293
TRP
301
A
GLU
302
n
294
GLU
302
A
GLY
303
n
295
GLY
303
A
MET
304
n
296
MET
304
A
ALA
305
n
297
ALA
305
A
PHE
306
n
298
PHE
306
A
PRO
307
n
299
PRO
307
A
GLU
308
n
300
GLU
308
A
GLY
309
n
301
GLY
309
A
ARG
310
n
302
ARG
310
A
GLN
311
n
303
GLN
311
A
VAL
312
n
304
VAL
312
A
VAL
313
n
305
VAL
313
A
LEU
314
n
306
LEU
314
A
ASP
315
n
307
ASP
315
A
LEU
316
n
308
LEU
316
A
TYR
317
n
309
TYR
317
A
GLY
318
n
310
GLY
318
A
SER
319
n
311
SER
319
A
ASN
320
n
312
ASN
320
A
HIS
321
n
313
HIS
321
A
ASP
322
n
314
ASP
322
A
ALA
323
n
315
ALA
323
A
ALA
324
n
316
ALA
324
A
THR
325
n
317
THR
325
A
TRP
326
n
318
TRP
326
A
ALA
327
n
319
ALA
327
A
ASP
328
n
320
ASP
328
A
PRO
329
n
321
PRO
329
A
GLN
330
n
322
GLN
330
A
GLU
331
n
323
GLU
331
A
PHE
332
n
324
PHE
332
A
ARG
333
n
325
ARG
333
A
PRO
334
n
326
PRO
334
A
GLU
335
n
327
GLU
335
A
ARG
336
n
328
ARG
336
A
PHE
337
n
329
PHE
337
A
ARG
338
n
330
ARG
338
A
ALA
339
n
331
ALA
339
A
TRP
340
n
332
TRP
340
A
ASP
341
n
333
ASP
341
A
GLU
342
n
334
GLU
342
A
ASP
343
n
335
ASP
343
A
SER
344
n
336
SER
344
A
PHE
345
n
337
PHE
345
A
ASN
346
n
338
ASN
346
A
PHE
347
n
339
PHE
347
A
ILE
348
n
340
ILE
348
A
PRO
349
n
341
PRO
349
A
GLN
350
n
342
GLN
350
A
GLY
351
n
343
GLY
351
A
GLY
352
n
344
GLY
352
A
GLY
353
n
345
GLY
353
A
ASP
354
n
346
ASP
354
A
HIS
355
n
347
HIS
355
A
TYR
356
n
348
TYR
356
A
LEU
357
n
349
LEU
357
A
GLY
358
n
350
GLY
358
A
HIS
359
n
351
HIS
359
A
ARG
360
n
352
ARG
360
A
CYS
361
n
353
CYS
361
A
PRO
362
n
354
PRO
362
A
GLY
363
n
355
GLY
363
A
GLU
364
n
356
GLU
364
A
TRP
365
n
357
TRP
365
A
ILE
366
n
358
ILE
366
A
VAL
367
n
359
VAL
367
A
LEU
368
n
360
LEU
368
A
ALA
369
n
361
ALA
369
A
ILE
370
n
362
ILE
370
A
MET
371
n
363
MET
371
A
LYS
372
n
364
LYS
372
A
VAL
373
n
365
VAL
373
A
ALA
374
n
366
ALA
374
A
ALA
375
n
367
ALA
375
A
HIS
376
n
368
HIS
376
A
LEU
377
n
369
LEU
377
A
LEU
378
n
370
LEU
378
A
VAL
379
n
371
VAL
379
A
ASN
380
n
372
ASN
380
A
ALA
381
n
373
ALA
381
A
MET
382
n
374
MET
382
A
ARG
383
n
375
ARG
383
A
TYR
384
n
376
TYR
384
A
ASP
385
n
377
ASP
385
A
VAL
386
n
378
VAL
386
A
PRO
387
n
379
PRO
387
A
ASP
388
n
380
ASP
388
A
GLN
389
n
381
GLN
389
A
ASP
390
n
382
ASP
390
A
LEU
391
n
383
LEU
391
A
SER
392
n
384
SER
392
A
ILE
393
n
385
ILE
393
A
ASP
394
n
386
ASP
394
A
PHE
395
n
387
PHE
395
A
ALA
396
n
388
ALA
396
A
ARG
397
n
389
ARG
397
A
LEU
398
n
390
LEU
398
A
PRO
399
n
391
PRO
399
A
ALA
400
n
392
ALA
400
A
LEU
401
n
393
LEU
401
A
PRO
402
n
394
PRO
402
A
LYS
403
n
395
LYS
403
A
SER
404
n
396
SER
404
A
GLY
405
n
397
GLY
405
A
PHE
406
n
398
PHE
406
A
VAL
407
n
399
VAL
407
A
MET
408
n
400
MET
408
A
ARG
409
n
401
ARG
409
A
ASN
410
n
402
ASN
410
A
VAL
411
n
403
VAL
411
A
HIS
412
n
404
HIS
412
A
ILE
413
n
405
ILE
413
A
GLY
414
n
406
GLY
414
A
GLY
415
n
407
GLY
415
A
1.2149
0.5872
0.5698
2.0430
1.2405
3.6602
0.2192
-0.2024
-0.0695
0.4778
-0.1052
-0.3037
0.0493
0.0787
-0.1140
0.3850
-0.0953
-0.0779
0.0558
0.0354
0.2812
refined
-41.2170
6.9000
4.0780
X-RAY DIFFRACTION
-1.1298
-1.1369
1.1653
3.1208
1.6109
-2.4626
0.0234
-0.0828
-0.0362
0.1675
0.0650
-0.2204
0.1317
0.0316
-0.0884
0.4743
-0.0897
-0.0621
0.1905
0.0528
0.4187
refined
-41.8960
8.4040
-0.6990
X-RAY DIFFRACTION
A
10
A
415
X-RAY DIFFRACTION
1
A
501
A
501
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
1
monomeric
A
CYS
361
A
SG
CYS
353
1_555
A
HEM
501
B
FE
HEM
1_555
A
HEM
501
B
NA
HEM
1_555
97.0
A
CYS
361
A
SG
CYS
353
1_555
A
HEM
501
B
FE
HEM
1_555
A
HEM
501
B
NB
HEM
1_555
89.9
A
HEM
501
B
NA
HEM
1_555
A
HEM
501
B
FE
HEM
1_555
A
HEM
501
B
NB
HEM
1_555
88.6
A
CYS
361
A
SG
CYS
353
1_555
A
HEM
501
B
FE
HEM
1_555
A
HEM
501
B
NC
HEM
1_555
86.2
A
HEM
501
B
NA
HEM
1_555
A
HEM
501
B
FE
HEM
1_555
A
HEM
501
B
NC
HEM
1_555
176.8
A
HEM
501
B
NB
HEM
1_555
A
HEM
501
B
FE
HEM
1_555
A
HEM
501
B
NC
HEM
1_555
90.8
A
CYS
361
A
SG
CYS
353
1_555
A
HEM
501
B
FE
HEM
1_555
A
HEM
501
B
ND
HEM
1_555
94.3
A
HEM
501
B
NA
HEM
1_555
A
HEM
501
B
FE
HEM
1_555
A
HEM
501
B
ND
HEM
1_555
90.9
A
HEM
501
B
NB
HEM
1_555
A
HEM
501
B
FE
HEM
1_555
A
HEM
501
B
ND
HEM
1_555
175.8
A
HEM
501
B
NC
HEM
1_555
A
HEM
501
B
FE
HEM
1_555
A
HEM
501
B
ND
HEM
1_555
89.5
A
CYS
361
A
SG
CYS
353
1_555
A
HEM
501
B
FE
HEM
1_555
A
HOH
676
D
O
HOH
1_555
177.7
A
HEM
501
B
NA
HEM
1_555
A
HEM
501
B
FE
HEM
1_555
A
HOH
676
D
O
HOH
1_555
83.1
A
HEM
501
B
NB
HEM
1_555
A
HEM
501
B
FE
HEM
1_555
A
HOH
676
D
O
HOH
1_555
92.4
A
HEM
501
B
NC
HEM
1_555
A
HEM
501
B
FE
HEM
1_555
A
HOH
676
D
O
HOH
1_555
93.8
A
HEM
501
B
ND
HEM
1_555
A
HEM
501
B
FE
HEM
1_555
A
HOH
676
D
O
HOH
1_555
83.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
38
A
N
SER
30
A
O
THR
45
A
O
THR
37
A
N
LEU
48
A
N
LEU
40
A
O
ASP
315
A
O
ASP
307
A
O
VAL
312
A
O
VAL
304
A
N
ALA
293
A
N
ALA
285
A
O
ARG
294
A
O
ARG
286
A
N
GLU
64
A
N
GLU
56
A
N
ILE
131
A
N
ILE
123
A
O
MET
408
A
O
MET
400
A
O
ARG
409
A
O
ARG
401
A
N
ASP
385
A
N
ASP
377
A
N
PHE
299
A
N
PHE
291
A
O
PHE
306
A
O
PHE
298
1
A
LEU
41
57.61
-124.36
1
A
VAL
71
-69.91
0.66
1
A
THR
76
-135.74
-82.64
1
A
MET
102
-96.79
44.04
1
A
ALA
172
-68.91
-72.82
1
A
PHE
287
-139.18
-76.27
1
A
ALA
381
-127.89
-58.73
1
A
PHE
406
62.62
94.09
104.190
18.1839
2.000
0.1100
0.0600
-0.0000
0.1100
-0.0000
-0.1700
0.9500
0.9310
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: RESIDUAL ONLY
0.2271
0.1993
0.2006
2.1700
19.7900
1516
31226
4.9000
99.5700
0.2373
0.2085
1.000
0.300
0.8560
9.6960
0.1150
0.2000
0.1687
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.2000
0.1690
0.8000
0.8000
1.4000
3AWM
MAXIMUM LIKELIHOOD
MASK
2.1700
19.7900
81
3350
51
0
3218
0.012
0.022
3372
1.250
1.981
4594
5.539
5.000
410
32.234
22.275
167
14.821
15.000
518
18.423
15.000
37
0.084
0.200
472
0.006
0.021
2665
0.641
1.500
2030
1.177
2.000
3241
1.703
3.000
1342
2.685
4.500
1351
0.2710
0.2210
2.2260
101
2139
2240
20
99.4700
42.762
2.170
20.000
3VNO
31376
-3.0
0.048
1.095
1
19.100
10.500
99.900
0.339
2.170
2.250
3106
1.065
1
10.900
100.000
0.258
2.250
2.340
3084
1.070
1
10.900
100.000
0.183
2.340
2.440
3097
1.139
1
10.900
100.000
0.141
2.440
2.570
3110
1.128
1
10.800
100.000
0.098
2.570
2.730
3112
1.108
1
10.700
100.000
0.071
2.730
2.940
3134
1.228
1
10.700
100.000
0.053
2.940
3.240
3116
1.120
1
10.500
100.000
0.042
3.240
3.700
3155
1.044
1
10.400
100.000
0.036
3.700
4.660
3181
1.051
1
10.100
99.900
0.034
4.660
20.000
3281
0.984
1
9.100
99.000
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
Cytochrome P450SP alpha (CYP152B1) mutant R241E
1
N
N
2
N
N
3
N
N
4
N
N
A
GLU
12
A
GLU
4
HELX_P
A
ASP
19
A
ASP
11
1
1
8
A
ARG
22
A
ARG
14
HELX_P
A
GLY
32
A
GLY
24
1
2
11
A
GLY
50
A
GLY
42
HELX_P
A
TYR
58
A
TYR
50
1
3
9
A
GLY
82
A
GLY
74
HELX_P
A
LEU
86
A
LEU
78
5
4
5
A
ASP
87
A
ASP
79
HELX_P
A
GLY
100
A
GLY
92
1
5
14
A
THR
103
A
THR
95
HELX_P
A
GLY
129
A
GLY
121
1
6
27
A
PHE
133
A
PHE
125
HELX_P
A
GLY
150
A
GLY
142
1
7
18
A
PRO
154
A
PRO
146
HELX_P
A
ASP
156
A
ASP
148
5
8
3
A
GLU
157
A
GLU
149
HELX_P
A
ASP
170
A
ASP
162
1
9
14
A
PRO
177
A
PRO
169
HELX_P
A
ALA
202
A
ALA
194
1
10
26
A
THR
211
A
THR
203
HELX_P
A
HIS
219
A
HIS
211
1
11
9
A
SER
228
A
SER
220
HELX_P
A
ALA
245
A
ALA
237
1
12
18
A
ALA
245
A
ALA
237
HELX_P
A
CYS
260
A
CYS
252
1
13
16
A
GLY
262
A
GLY
254
HELX_P
A
GLN
270
A
GLN
262
1
14
9
A
ASP
272
A
ASP
264
HELX_P
A
TYR
285
A
TYR
277
1
15
14
A
LEU
316
A
LEU
308
HELX_P
A
HIS
321
A
HIS
313
1
16
6
A
ARG
333
A
ARG
325
HELX_P
A
ALA
339
A
ALA
331
5
17
7
A
GLY
363
A
GLY
355
HELX_P
A
ALA
381
A
ALA
373
1
18
19
metalc
2.346
A
CYS
361
A
SG
CYS
353
1_555
A
HEM
501
B
FE
HEM
1_555
metalc
2.769
A
HEM
501
B
FE
HEM
1_555
A
HOH
676
D
O
HOH
1_555
OXIDOREDUCTASE
Cytochrome P450, OXIDOREDUCTASE
A
LEU
398
A
LEU
390
1
A
PRO
399
A
PRO
391
0.44
O24782_PSEPA
UNP
1
9
O24782
GPDETLSLLADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAEIFYDTTRFEREGAMPVAIQKTLLGQGGVQGLDG
ETHRHRKQMFMGLMTPERVRALAQLFEAEWRRAVPGWTRKGEIVFYDELHEPLTRAVCAWAGVPLPDDEAGNRAGELRAL
FDAAGSASPRHLWSRLARRRVDAWAKRIIEGIRAGSIGSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLRPTVAIAV
YITFVAHALQTCSGIRAALVQQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWAD
PQEFRPERFRAWDEDSFNFIPQGGGDHYLGHRCPGEWIVLAIMKVAAHLLVNAMRYDVPDQDLSIDFARLPALPKSGFVM
RNVHIGG
9
415
3VNO
9
415
O24782
A
1
1
407
1
ARG
engineered mutation
GLU
241
3VNO
A
O24782
UNP
241
233
5
3
2
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
35
A
ALA
27
A
PHE
40
A
PHE
32
A
LYS
43
A
LYS
35
A
LYS
49
A
LYS
41
A
GLN
311
A
GLN
303
A
ASP
315
A
ASP
307
A
ALA
290
A
ALA
282
A
ALA
295
A
ALA
287
A
PHE
63
A
PHE
55
A
GLU
64
A
GLU
56
A
GLU
130
A
GLU
122
A
VAL
132
A
VAL
124
A
VAL
407
A
VAL
399
A
HIS
412
A
HIS
404
A
ARG
383
A
ARG
375
A
ASP
385
A
ASP
377
A
PHE
299
A
PHE
291
A
TRP
301
A
TRP
293
A
MET
304
A
MET
296
A
PHE
306
A
PHE
298
BINDING SITE FOR RESIDUE HEM A 501
A
HEM
501
Software
25
BINDING SITE FOR RESIDUE MPD A 502
A
MPD
502
Software
1
A
TYR
58
A
TYR
50
25
1_555
A
ARG
65
A
ARG
57
25
1_555
A
VAL
83
A
VAL
75
25
1_555
A
GLN
84
A
GLN
76
25
1_555
A
HIS
91
A
HIS
83
25
1_555
A
LYS
95
A
LYS
87
25
1_555
A
PHE
98
A
PHE
90
25
1_555
A
MET
102
A
MET
94
25
1_555
A
ASN
238
A
ASN
230
25
1_555
A
PRO
242
A
PRO
234
25
1_555
A
THR
243
A
THR
235
25
1_555
A
ALA
245
A
ALA
237
25
1_555
A
ILE
246
A
ILE
238
25
1_555
A
PHE
287
A
PHE
279
25
1_555
A
PHE
288
A
PHE
280
25
1_555
A
VAL
291
A
VAL
283
25
1_555
A
LEU
316
A
LEU
308
25
1_555
A
GLN
350
A
GLN
342
25
1_555
A
HIS
359
A
HIS
351
25
1_555
A
CYS
361
A
CYS
353
25
1_555
A
PRO
362
A
PRO
354
25
1_555
A
GLY
363
A
GLY
355
25
1_555
A
VAL
367
A
VAL
359
25
1_555
A
HOH
607
D
HOH
25
1_555
A
HOH
676
D
HOH
25
1_555
A
PRO
70
A
PRO
62
1
1_555
152
P 31 2 1