0.016588
0.000000
0.000000
0.000000
0.016218
0.000000
0.000000
0.000000
0.012193
0.00000
0.00000
0.00000
Wielens, J.
Chalmers, D.K.
Parker, M.W.
Scanlon, M.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
60.284
61.658
82.017
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O6
180.156
beta-D-fructofuranose
beta-D-fructose; D-fructose; fructose
D-saccharide, beta linking
C6 H12 O6
180.156
alpha-D-glucopyranose
alpha-D-glucose; D-glucose; glucose
D-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C10 H10 N2
158.200
4-(1H-pyrrol-1-yl)aniline
non-polymer
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
C
N
90
R
C
N
91
S
C
N
92
S
C
N
93
R
C
N
94
N
C
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
S
C
N
114
R
C
N
115
S
C
N
116
S
C
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
N
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
N
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
N
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
S
N
376
N
O
N
377
N
O
N
378
N
O
N
379
N
O
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
R
C
N
385
N
O
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
N
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
N
453
N
C
N
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
doub
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
N
340
N
sing
Y
341
N
sing
N
342
N
sing
N
343
N
sing
Y
344
N
doub
N
345
N
sing
N
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
N
351
N
sing
Y
352
N
sing
Y
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
US
J Biomol Screen
1087-0571
18
147
159
10.1177/1087057112465979
23139382
Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
2013
10.2210/pdb3vq7/pdb
pdb_00003vq7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Mirror
CCD
2007-09-26
ADSC QUANTUM 210r
Double mirror
SINGLE WAVELENGTH
M
x-ray
1
0.95363
1.0
MX1
Australian Synchrotron
0.95363
SYNCHROTRON
AUSTRALIAN SYNCHROTRON BEAMLINE MX1
17248.518
POL polyprotein
integrase core domain, UNP residues 770-927
C56S W131D, F139D, F185H
2
man
polymer
342.297
beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
1
man
branched
112.411
CADMIUM ION
4
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
158.200
4-(1H-pyrrol-1-yl)aniline
2
syn
non-polymer
18.015
water
118
nat
water
sucrose
no
no
DSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACDWAG
IKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDIQTKE
DSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACDWAG
IKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDIQTKE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NL43
sample
pol
11676
Human immunodeficiency virus 1
562
Escherichia coli
BL21(DE3)
Plasmid
PeT23b+
1
2.21
44.33
VAPOR DIFFUSION, HANGING DROP
5.6
1.6M AmSO4, 0.1M Na Citrate pH 5.6, 50mM CdCl2, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
atom_site
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
pdbx_validate_close_contact
struct_asym
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Advisory
Atomic model
Data collection
Database references
Derived calculations
Non-polymer description
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2013-01-30
2
0
2020-07-29
2
1
2023-11-08
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.src_method
_entity.type
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_asym.entity_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
G
SUC
1
n
C
GLC
1
G
SUC
1
n
C
FRU
2
DFrufb
b-D-fructofuranose
b-D-Fruf
Fru
DGlcpa
a-D-glucopyranose
a-D-Glcp
Glc
PDBJ
Y
PDBJ
2012-03-20
REL
REL
oligosaccharide
DFrufb2-1DGlcpa
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1
2
PDB2Glycan
1.1.0
WURCS
[][b-D-Fruf]{[(2+1)][a-D-Glcp]{}}
2
PDB-CARE
LINUCS
C1
O2
GLC
FRU
1
2
2
O1
HO2
sing
n
n
CD
CADMIUM ION
SO4
SULFATE ION
SNU
4-(1H-pyrrol-1-yl)aniline
HOH
water
3L3U
PDB ENTRY 3l3u
PDB
experimental model
Nutrient
oligosaccharide with reducing-end-to-reducing-end glycosidic bond
sucrose
Oligosaccharide
CD
1001
3
CD
CD
1001
A
CD
1002
3
CD
CD
1002
A
SO4
750
4
SO4
SO4
1003
A
PYA
1
5
SNU
SNU
1004
A
CD
1003
3
CD
CD
301
B
CD
1004
3
CD
CD
302
B
SO4
751
4
SO4
SO4
303
B
PYA
1
5
SNU
SNU
304
B
HOH
1
6
HOH
HOH
1101
A
HOH
6
6
HOH
HOH
1102
A
HOH
9
6
HOH
HOH
1103
A
HOH
10
6
HOH
HOH
1104
A
HOH
11
6
HOH
HOH
1105
A
HOH
12
6
HOH
HOH
1106
A
HOH
13
6
HOH
HOH
1107
A
HOH
15
6
HOH
HOH
1108
A
HOH
16
6
HOH
HOH
1109
A
HOH
17
6
HOH
HOH
1110
A
HOH
19
6
HOH
HOH
1111
A
HOH
22
6
HOH
HOH
1112
A
HOH
24
6
HOH
HOH
1113
A
HOH
26
6
HOH
HOH
1114
A
HOH
29
6
HOH
HOH
1115
A
HOH
31
6
HOH
HOH
1116
A
HOH
35
6
HOH
HOH
1117
A
HOH
37
6
HOH
HOH
1118
A
HOH
38
6
HOH
HOH
1119
A
HOH
42
6
HOH
HOH
1120
A
HOH
44
6
HOH
HOH
1121
A
HOH
48
6
HOH
HOH
1122
A
HOH
52
6
HOH
HOH
1123
A
HOH
54
6
HOH
HOH
1124
A
HOH
56
6
HOH
HOH
1125
A
HOH
57
6
HOH
HOH
1126
A
HOH
60
6
HOH
HOH
1127
A
HOH
61
6
HOH
HOH
1128
A
HOH
64
6
HOH
HOH
1129
A
HOH
65
6
HOH
HOH
1130
A
HOH
67
6
HOH
HOH
1131
A
HOH
68
6
HOH
HOH
1132
A
HOH
69
6
HOH
HOH
1133
A
HOH
70
6
HOH
HOH
1134
A
HOH
72
6
HOH
HOH
1135
A
HOH
73
6
HOH
HOH
1136
A
HOH
75
6
HOH
HOH
1137
A
HOH
76
6
HOH
HOH
1138
A
HOH
77
6
HOH
HOH
1139
A
HOH
82
6
HOH
HOH
1140
A
HOH
83
6
HOH
HOH
1141
A
HOH
86
6
HOH
HOH
1142
A
HOH
87
6
HOH
HOH
1143
A
HOH
88
6
HOH
HOH
1144
A
HOH
89
6
HOH
HOH
1145
A
HOH
93
6
HOH
HOH
1146
A
HOH
94
6
HOH
HOH
1147
A
HOH
97
6
HOH
HOH
1148
A
HOH
99
6
HOH
HOH
1149
A
HOH
101
6
HOH
HOH
1150
A
HOH
102
6
HOH
HOH
1151
A
HOH
104
6
HOH
HOH
1152
A
HOH
106
6
HOH
HOH
1153
A
HOH
109
6
HOH
HOH
1154
A
HOH
110
6
HOH
HOH
1155
A
HOH
112
6
HOH
HOH
1156
A
HOH
114
6
HOH
HOH
1157
A
HOH
116
6
HOH
HOH
1158
A
HOH
118
6
HOH
HOH
1159
A
HOH
2
6
HOH
HOH
401
B
HOH
3
6
HOH
HOH
402
B
HOH
4
6
HOH
HOH
403
B
HOH
5
6
HOH
HOH
404
B
HOH
7
6
HOH
HOH
405
B
HOH
8
6
HOH
HOH
406
B
HOH
14
6
HOH
HOH
407
B
HOH
18
6
HOH
HOH
408
B
HOH
20
6
HOH
HOH
409
B
HOH
21
6
HOH
HOH
410
B
HOH
23
6
HOH
HOH
411
B
HOH
25
6
HOH
HOH
412
B
HOH
27
6
HOH
HOH
413
B
HOH
28
6
HOH
HOH
414
B
HOH
30
6
HOH
HOH
415
B
HOH
32
6
HOH
HOH
416
B
HOH
33
6
HOH
HOH
417
B
HOH
34
6
HOH
HOH
418
B
HOH
36
6
HOH
HOH
419
B
HOH
39
6
HOH
HOH
420
B
HOH
40
6
HOH
HOH
421
B
HOH
41
6
HOH
HOH
422
B
HOH
43
6
HOH
HOH
423
B
HOH
45
6
HOH
HOH
424
B
HOH
46
6
HOH
HOH
425
B
HOH
47
6
HOH
HOH
426
B
HOH
49
6
HOH
HOH
427
B
HOH
50
6
HOH
HOH
428
B
HOH
51
6
HOH
HOH
429
B
HOH
53
6
HOH
HOH
430
B
HOH
55
6
HOH
HOH
431
B
HOH
58
6
HOH
HOH
432
B
HOH
59
6
HOH
HOH
433
B
HOH
62
6
HOH
HOH
434
B
HOH
63
6
HOH
HOH
435
B
HOH
66
6
HOH
HOH
436
B
HOH
71
6
HOH
HOH
437
B
HOH
74
6
HOH
HOH
438
B
HOH
78
6
HOH
HOH
439
B
HOH
79
6
HOH
HOH
440
B
HOH
80
6
HOH
HOH
441
B
HOH
81
6
HOH
HOH
442
B
HOH
84
6
HOH
HOH
443
B
HOH
85
6
HOH
HOH
444
B
HOH
90
6
HOH
HOH
445
B
HOH
91
6
HOH
HOH
446
B
HOH
92
6
HOH
HOH
447
B
HOH
95
6
HOH
HOH
448
B
HOH
96
6
HOH
HOH
449
B
HOH
98
6
HOH
HOH
450
B
HOH
100
6
HOH
HOH
451
B
HOH
103
6
HOH
HOH
452
B
HOH
105
6
HOH
HOH
453
B
HOH
107
6
HOH
HOH
454
B
HOH
108
6
HOH
HOH
455
B
HOH
111
6
HOH
HOH
456
B
HOH
113
6
HOH
HOH
457
B
HOH
115
6
HOH
HOH
458
B
HOH
117
6
HOH
HOH
459
B
n
1
55
A
n
2
56
A
SER
57
n
3
SER
57
A
PRO
58
n
4
PRO
58
A
GLY
59
n
5
GLY
59
A
ILE
60
n
6
ILE
60
A
TRP
61
n
7
TRP
61
A
GLN
62
n
8
GLN
62
A
LEU
63
n
9
LEU
63
A
ASP
64
n
10
ASP
64
A
CYS
65
n
11
CYS
65
A
THR
66
n
12
THR
66
A
HIS
67
n
13
HIS
67
A
LEU
68
n
14
LEU
68
A
GLU
69
n
15
GLU
69
A
GLY
70
n
16
GLY
70
A
LYS
71
n
17
LYS
71
A
VAL
72
n
18
VAL
72
A
ILE
73
n
19
ILE
73
A
LEU
74
n
20
LEU
74
A
VAL
75
n
21
VAL
75
A
ALA
76
n
22
ALA
76
A
VAL
77
n
23
VAL
77
A
HIS
78
n
24
HIS
78
A
VAL
79
n
25
VAL
79
A
ALA
80
n
26
ALA
80
A
SER
81
n
27
SER
81
A
GLY
82
n
28
GLY
82
A
TYR
83
n
29
TYR
83
A
ILE
84
n
30
ILE
84
A
GLU
85
n
31
GLU
85
A
ALA
86
n
32
ALA
86
A
GLU
87
n
33
GLU
87
A
VAL
88
n
34
VAL
88
A
ILE
89
n
35
ILE
89
A
PRO
90
n
36
PRO
90
A
ALA
91
n
37
ALA
91
A
GLU
92
n
38
GLU
92
A
THR
93
n
39
THR
93
A
GLY
94
n
40
GLY
94
A
GLN
95
n
41
GLN
95
A
GLU
96
n
42
GLU
96
A
THR
97
n
43
THR
97
A
ALA
98
n
44
ALA
98
A
TYR
99
n
45
TYR
99
A
PHE
100
n
46
PHE
100
A
LEU
101
n
47
LEU
101
A
LEU
102
n
48
LEU
102
A
LYS
103
n
49
LYS
103
A
LEU
104
n
50
LEU
104
A
ALA
105
n
51
ALA
105
A
GLY
106
n
52
GLY
106
A
ARG
107
n
53
ARG
107
A
TRP
108
n
54
TRP
108
A
PRO
109
n
55
PRO
109
A
VAL
110
n
56
VAL
110
A
LYS
111
n
57
LYS
111
A
THR
112
n
58
THR
112
A
VAL
113
n
59
VAL
113
A
HIS
114
n
60
HIS
114
A
THR
115
n
61
THR
115
A
ASP
116
n
62
ASP
116
A
ASN
117
n
63
ASN
117
A
GLY
118
n
64
GLY
118
A
SER
119
n
65
SER
119
A
ASN
120
n
66
ASN
120
A
PHE
121
n
67
PHE
121
A
THR
122
n
68
THR
122
A
SER
123
n
69
SER
123
A
THR
124
n
70
THR
124
A
THR
125
n
71
THR
125
A
VAL
126
n
72
VAL
126
A
LYS
127
n
73
LYS
127
A
ALA
128
n
74
ALA
128
A
ALA
129
n
75
ALA
129
A
CYS
130
n
76
CYS
130
A
ASP
131
n
77
ASP
131
A
TRP
132
n
78
TRP
132
A
ALA
133
n
79
ALA
133
A
GLY
134
n
80
GLY
134
A
ILE
135
n
81
ILE
135
A
LYS
136
n
82
LYS
136
A
GLN
137
n
83
GLN
137
A
GLU
138
n
84
GLU
138
A
ASP
139
n
85
ASP
139
A
GLY
140
n
86
GLY
140
A
ILE
141
n
87
ILE
141
A
PRO
142
n
88
PRO
142
A
TYR
143
n
89
TYR
143
A
n
90
144
A
n
91
145
A
n
92
146
A
n
93
147
A
n
94
148
A
n
95
149
A
VAL
150
n
96
VAL
150
A
ILE
151
n
97
ILE
151
A
GLU
152
n
98
GLU
152
A
SER
153
n
99
SER
153
A
MET
154
n
100
MET
154
A
ASN
155
n
101
ASN
155
A
LYS
156
n
102
LYS
156
A
GLU
157
n
103
GLU
157
A
LEU
158
n
104
LEU
158
A
LYS
159
n
105
LYS
159
A
LYS
160
n
106
LYS
160
A
ILE
161
n
107
ILE
161
A
ILE
162
n
108
ILE
162
A
GLY
163
n
109
GLY
163
A
GLN
164
n
110
GLN
164
A
VAL
165
n
111
VAL
165
A
ARG
166
n
112
ARG
166
A
ASP
167
n
113
ASP
167
A
GLN
168
n
114
GLN
168
A
ALA
169
n
115
ALA
169
A
GLU
170
n
116
GLU
170
A
HIS
171
n
117
HIS
171
A
LEU
172
n
118
LEU
172
A
LYS
173
n
119
LYS
173
A
THR
174
n
120
THR
174
A
ALA
175
n
121
ALA
175
A
VAL
176
n
122
VAL
176
A
GLN
177
n
123
GLN
177
A
MET
178
n
124
MET
178
A
ALA
179
n
125
ALA
179
A
VAL
180
n
126
VAL
180
A
PHE
181
n
127
PHE
181
A
ILE
182
n
128
ILE
182
A
HIS
183
n
129
HIS
183
A
ASN
184
n
130
ASN
184
A
HIS
185
n
131
HIS
185
A
LYS
186
n
132
LYS
186
A
ARG
187
n
133
ARG
187
A
LYS
188
n
134
LYS
188
A
GLY
189
n
135
GLY
189
A
GLY
190
n
136
GLY
190
A
ILE
191
n
137
ILE
191
A
GLY
192
n
138
GLY
192
A
GLY
193
n
139
GLY
193
A
TYR
194
n
140
TYR
194
A
SER
195
n
141
SER
195
A
ALA
196
n
142
ALA
196
A
GLY
197
n
143
GLY
197
A
GLU
198
n
144
GLU
198
A
ARG
199
n
145
ARG
199
A
ILE
200
n
146
ILE
200
A
VAL
201
n
147
VAL
201
A
ASP
202
n
148
ASP
202
A
ILE
203
n
149
ILE
203
A
ILE
204
n
150
ILE
204
A
ALA
205
n
151
ALA
205
A
THR
206
n
152
THR
206
A
ASP
207
n
153
ASP
207
A
n
154
208
A
n
155
209
A
n
156
210
A
n
157
211
A
n
158
212
A
n
1
55
B
SER
56
n
2
SER
56
B
SER
57
n
3
SER
57
B
PRO
58
n
4
PRO
58
B
GLY
59
n
5
GLY
59
B
ILE
60
n
6
ILE
60
B
TRP
61
n
7
TRP
61
B
GLN
62
n
8
GLN
62
B
LEU
63
n
9
LEU
63
B
ASP
64
n
10
ASP
64
B
CYS
65
n
11
CYS
65
B
THR
66
n
12
THR
66
B
HIS
67
n
13
HIS
67
B
LEU
68
n
14
LEU
68
B
GLU
69
n
15
GLU
69
B
GLY
70
n
16
GLY
70
B
LYS
71
n
17
LYS
71
B
VAL
72
n
18
VAL
72
B
ILE
73
n
19
ILE
73
B
LEU
74
n
20
LEU
74
B
VAL
75
n
21
VAL
75
B
ALA
76
n
22
ALA
76
B
VAL
77
n
23
VAL
77
B
HIS
78
n
24
HIS
78
B
VAL
79
n
25
VAL
79
B
ALA
80
n
26
ALA
80
B
SER
81
n
27
SER
81
B
GLY
82
n
28
GLY
82
B
TYR
83
n
29
TYR
83
B
ILE
84
n
30
ILE
84
B
GLU
85
n
31
GLU
85
B
ALA
86
n
32
ALA
86
B
GLU
87
n
33
GLU
87
B
VAL
88
n
34
VAL
88
B
ILE
89
n
35
ILE
89
B
PRO
90
n
36
PRO
90
B
ALA
91
n
37
ALA
91
B
GLU
92
n
38
GLU
92
B
THR
93
n
39
THR
93
B
GLY
94
n
40
GLY
94
B
GLN
95
n
41
GLN
95
B
GLU
96
n
42
GLU
96
B
THR
97
n
43
THR
97
B
ALA
98
n
44
ALA
98
B
TYR
99
n
45
TYR
99
B
PHE
100
n
46
PHE
100
B
LEU
101
n
47
LEU
101
B
LEU
102
n
48
LEU
102
B
LYS
103
n
49
LYS
103
B
LEU
104
n
50
LEU
104
B
ALA
105
n
51
ALA
105
B
GLY
106
n
52
GLY
106
B
ARG
107
n
53
ARG
107
B
TRP
108
n
54
TRP
108
B
PRO
109
n
55
PRO
109
B
VAL
110
n
56
VAL
110
B
LYS
111
n
57
LYS
111
B
THR
112
n
58
THR
112
B
VAL
113
n
59
VAL
113
B
HIS
114
n
60
HIS
114
B
THR
115
n
61
THR
115
B
ASP
116
n
62
ASP
116
B
ASN
117
n
63
ASN
117
B
GLY
118
n
64
GLY
118
B
SER
119
n
65
SER
119
B
ASN
120
n
66
ASN
120
B
PHE
121
n
67
PHE
121
B
THR
122
n
68
THR
122
B
SER
123
n
69
SER
123
B
THR
124
n
70
THR
124
B
THR
125
n
71
THR
125
B
VAL
126
n
72
VAL
126
B
LYS
127
n
73
LYS
127
B
ALA
128
n
74
ALA
128
B
ALA
129
n
75
ALA
129
B
CYS
130
n
76
CYS
130
B
ASP
131
n
77
ASP
131
B
TRP
132
n
78
TRP
132
B
ALA
133
n
79
ALA
133
B
GLY
134
n
80
GLY
134
B
ILE
135
n
81
ILE
135
B
LYS
136
n
82
LYS
136
B
GLN
137
n
83
GLN
137
B
GLU
138
n
84
GLU
138
B
ASP
139
n
85
ASP
139
B
n
86
140
B
n
87
141
B
n
88
142
B
n
89
143
B
n
90
144
B
n
91
145
B
n
92
146
B
n
93
147
B
n
94
148
B
n
95
149
B
n
96
150
B
n
97
151
B
n
98
152
B
SER
153
n
99
SER
153
B
MET
154
n
100
MET
154
B
ASN
155
n
101
ASN
155
B
LYS
156
n
102
LYS
156
B
GLU
157
n
103
GLU
157
B
LEU
158
n
104
LEU
158
B
LYS
159
n
105
LYS
159
B
LYS
160
n
106
LYS
160
B
ILE
161
n
107
ILE
161
B
ILE
162
n
108
ILE
162
B
GLY
163
n
109
GLY
163
B
GLN
164
n
110
GLN
164
B
VAL
165
n
111
VAL
165
B
ARG
166
n
112
ARG
166
B
ASP
167
n
113
ASP
167
B
GLN
168
n
114
GLN
168
B
ALA
169
n
115
ALA
169
B
GLU
170
n
116
GLU
170
B
HIS
171
n
117
HIS
171
B
LEU
172
n
118
LEU
172
B
LYS
173
n
119
LYS
173
B
THR
174
n
120
THR
174
B
ALA
175
n
121
ALA
175
B
VAL
176
n
122
VAL
176
B
GLN
177
n
123
GLN
177
B
MET
178
n
124
MET
178
B
ALA
179
n
125
ALA
179
B
VAL
180
n
126
VAL
180
B
PHE
181
n
127
PHE
181
B
ILE
182
n
128
ILE
182
B
HIS
183
n
129
HIS
183
B
ASN
184
n
130
ASN
184
B
HIS
185
n
131
HIS
185
B
LYS
186
n
132
LYS
186
B
ARG
187
n
133
ARG
187
B
LYS
188
n
134
LYS
188
B
GLY
189
n
135
GLY
189
B
GLY
190
n
136
GLY
190
B
ILE
191
n
137
ILE
191
B
GLY
192
n
138
GLY
192
B
GLY
193
n
139
GLY
193
B
TYR
194
n
140
TYR
194
B
SER
195
n
141
SER
195
B
ALA
196
n
142
ALA
196
B
GLY
197
n
143
GLY
197
B
GLU
198
n
144
GLU
198
B
ARG
199
n
145
ARG
199
B
ILE
200
n
146
ILE
200
B
VAL
201
n
147
VAL
201
B
ASP
202
n
148
ASP
202
B
ILE
203
n
149
ILE
203
B
ILE
204
n
150
ILE
204
B
ALA
205
n
151
ALA
205
B
THR
206
n
152
THR
206
B
ASP
207
n
153
ASP
207
B
ILE
208
n
154
ILE
208
B
GLN
209
n
155
GLN
209
B
n
156
210
B
n
157
211
B
n
158
212
B
author_and_software_defined_assembly
PISA
2
dimeric
4980
-70
12680
A
CYS
65
A
SG
CYS
11
1_555
A
CD
1001
D
CD
CD
1_555
A
HIS
67
A
NE2
HIS
13
1_555
114.9
A
CYS
65
A
SG
CYS
11
1_555
A
CD
1001
D
CD
CD
1_555
A
GLU
92
A
OE1
GLU
38
1_555
100.0
A
HIS
67
A
NE2
HIS
13
1_555
A
CD
1001
D
CD
CD
1_555
A
GLU
92
A
OE1
GLU
38
1_555
95.1
A
CYS
65
A
SG
CYS
11
1_555
A
CD
1001
D
CD
CD
1_555
A
HOH
1155
L
O
HOH
1_555
85.4
A
HIS
67
A
NE2
HIS
13
1_555
A
CD
1001
D
CD
CD
1_555
A
HOH
1155
L
O
HOH
1_555
84.6
A
GLU
92
A
OE1
GLU
38
1_555
A
CD
1001
D
CD
CD
1_555
A
HOH
1155
L
O
HOH
1_555
174.1
A
CYS
65
A
SG
CYS
11
1_555
A
CD
1002
E
CD
CD
1_555
A
GLU
92
A
OE2
GLU
38
1_555
92.9
A
CYS
65
A
SG
CYS
11
1_555
A
CD
1002
E
CD
CD
1_555
A
ASP
116
A
OD2
ASP
62
1_555
104.9
A
GLU
92
A
OE2
GLU
38
1_555
A
CD
1002
E
CD
CD
1_555
A
ASP
116
A
OD2
ASP
62
1_555
161.8
A
CYS
65
A
SG
CYS
11
1_555
A
CD
1002
E
CD
CD
1_555
A
HOH
1101
L
O
HOH
1_555
99.6
A
GLU
92
A
OE2
GLU
38
1_555
A
CD
1002
E
CD
CD
1_555
A
HOH
1101
L
O
HOH
1_555
86.3
A
ASP
116
A
OD2
ASP
62
1_555
A
CD
1002
E
CD
CD
1_555
A
HOH
1101
L
O
HOH
1_555
87.2
A
CYS
65
A
SG
CYS
11
1_555
A
CD
1002
E
CD
CD
1_555
A
HOH
1117
L
O
HOH
1_555
163.5
A
GLU
92
A
OE2
GLU
38
1_555
A
CD
1002
E
CD
CD
1_555
A
HOH
1117
L
O
HOH
1_555
78.0
A
ASP
116
A
OD2
ASP
62
1_555
A
CD
1002
E
CD
CD
1_555
A
HOH
1117
L
O
HOH
1_555
85.4
A
HOH
1101
L
O
HOH
1_555
A
CD
1002
E
CD
CD
1_555
A
HOH
1117
L
O
HOH
1_555
93.7
B
CYS
65
B
SG
CYS
11
1_555
B
CD
301
H
CD
CD
1_555
B
HIS
67
B
NE2
HIS
13
1_555
111.5
B
CYS
65
B
SG
CYS
11
1_555
B
CD
301
H
CD
CD
1_555
B
GLU
92
B
OE1
GLU
38
1_555
100.0
B
HIS
67
B
NE2
HIS
13
1_555
B
CD
301
H
CD
CD
1_555
B
GLU
92
B
OE1
GLU
38
1_555
103.4
B
CYS
65
B
SG
CYS
11
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
440
M
O
HOH
1_555
79.8
B
HIS
67
B
NE2
HIS
13
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
440
M
O
HOH
1_555
155.7
B
GLU
92
B
OE1
GLU
38
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
440
M
O
HOH
1_555
95.3
B
CYS
65
B
SG
CYS
11
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
445
M
O
HOH
1_555
136.2
B
HIS
67
B
NE2
HIS
13
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
445
M
O
HOH
1_555
97.8
B
GLU
92
B
OE1
GLU
38
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
445
M
O
HOH
1_555
104.2
B
HOH
440
M
O
HOH
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
445
M
O
HOH
1_555
62.1
B
CYS
65
B
SG
CYS
11
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
459
M
O
HOH
1_555
90.3
B
HIS
67
B
NE2
HIS
13
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
459
M
O
HOH
1_555
85.9
B
GLU
92
B
OE1
GLU
38
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
459
M
O
HOH
1_555
162.3
B
HOH
440
M
O
HOH
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
459
M
O
HOH
1_555
72.3
B
HOH
445
M
O
HOH
1_555
B
CD
301
H
CD
CD
1_555
B
HOH
459
M
O
HOH
1_555
59.1
B
CYS
65
B
SG
CYS
11
1_555
B
CD
302
I
CD
CD
1_555
B
GLU
92
B
OE2
GLU
38
1_555
100.0
B
CYS
65
B
SG
CYS
11
1_555
B
CD
302
I
CD
CD
1_555
B
ASP
116
B
OD2
ASP
62
1_555
99.3
B
GLU
92
B
OE2
GLU
38
1_555
B
CD
302
I
CD
CD
1_555
B
ASP
116
B
OD2
ASP
62
1_555
160.6
B
CYS
65
B
SG
CYS
11
1_555
B
CD
302
I
CD
CD
1_555
B
HOH
424
M
O
HOH
1_555
162.5
B
GLU
92
B
OE2
GLU
38
1_555
B
CD
302
I
CD
CD
1_555
B
HOH
424
M
O
HOH
1_555
80.1
B
ASP
116
B
OD2
ASP
62
1_555
B
CD
302
I
CD
CD
1_555
B
HOH
424
M
O
HOH
1_555
80.9
B
CYS
65
B
SG
CYS
11
1_555
B
CD
302
I
CD
CD
1_555
B
HOH
440
M
O
HOH
1_555
79.9
B
GLU
92
B
OE2
GLU
38
1_555
B
CD
302
I
CD
CD
1_555
B
HOH
440
M
O
HOH
1_555
92.5
B
ASP
116
B
OD2
ASP
62
1_555
B
CD
302
I
CD
CD
1_555
B
HOH
440
M
O
HOH
1_555
88.8
B
HOH
424
M
O
HOH
1_555
B
CD
302
I
CD
CD
1_555
B
HOH
440
M
O
HOH
1_555
82.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
85
A
O
GLU
31
A
N
ALA
76
A
N
ALA
22
A
O
VAL
75
A
O
VAL
21
A
N
ASP
64
A
N
ASP
10
A
N
LEU
63
A
N
LEU
9
A
O
HIS
114
A
O
HIS
60
A
N
VAL
113
A
N
VAL
59
A
O
GLU
138
A
O
GLU
84
A
N
LYS
188
A
N
LYS
134
A
O
TYR
194
A
O
TYR
140
B
O
GLU
85
B
O
GLU
31
B
N
ALA
76
B
N
ALA
22
B
O
ILE
73
B
O
ILE
19
B
N
THR
66
B
N
THR
12
B
N
LEU
63
B
N
LEU
9
B
O
HIS
114
B
O
HIS
60
B
N
VAL
113
B
N
VAL
59
B
O
GLU
138
B
O
GLU
84
1
A
CG
LYS
127
A
CG
LYS
73
1
Y
1
A
CD
LYS
127
A
CD
LYS
73
1
Y
1
A
CE
LYS
127
A
CE
LYS
73
1
Y
1
A
NZ
LYS
127
A
NZ
LYS
73
1
Y
1
A
ASP
55
A
ASP
1
1
Y
1
A
SER
56
A
SER
2
1
Y
1
A
ASN
144
A
ASN
90
1
Y
1
A
PRO
145
A
PRO
91
1
Y
1
A
GLN
146
A
GLN
92
1
Y
1
A
SER
147
A
SER
93
1
Y
1
A
GLN
148
A
GLN
94
1
Y
1
A
GLY
149
A
GLY
95
1
Y
1
A
ILE
208
A
ILE
154
1
Y
1
A
GLN
209
A
GLN
155
1
Y
1
A
THR
210
A
THR
156
1
Y
1
A
LYS
211
A
LYS
157
1
Y
1
A
GLU
212
A
GLU
158
1
Y
1
B
ASP
55
B
ASP
1
1
Y
1
B
GLY
140
B
GLY
86
1
Y
1
B
ILE
141
B
ILE
87
1
Y
1
B
PRO
142
B
PRO
88
1
Y
1
B
TYR
143
B
TYR
89
1
Y
1
B
ASN
144
B
ASN
90
1
Y
1
B
PRO
145
B
PRO
91
1
Y
1
B
GLN
146
B
GLN
92
1
Y
1
B
SER
147
B
SER
93
1
Y
1
B
GLN
148
B
GLN
94
1
Y
1
B
GLY
149
B
GLY
95
1
Y
1
B
VAL
150
B
VAL
96
1
Y
1
B
ILE
151
B
ILE
97
1
Y
1
B
GLU
152
B
GLU
98
1
Y
1
B
THR
210
B
THR
156
1
Y
1
B
LYS
211
B
LYS
157
1
Y
1
B
GLU
212
B
GLU
158
1
Y
1
A
A
O4
O
SO4
HOH
1003
1158
1.75
1
A
A
OG1
O
THR
HOH
206
1159
1.98
1
C
C
O5
O2
GLC
FRU
1
2
2.18
1
A
A
PRO
TYR
142
143
141.38
1
B
ASN
117
58.53
19.56
20.482
-0.33
0.00
0.00
1.43
0.00
-1.10
0.954
0.945
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.22677
0.19900
0.1990
0.20042
1.63
34.15
1924
38588
36498
5.0
99.46
1.919
0.067
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.098
0.096
0.80
0.80
1.20
PDB ENTRY 3l3u
MAXIMUM LIKELIHOOD
MASK
1.63
34.15
118
2369
61
0
2190
0.014
0.022
2301
0.002
0.020
1508
1.749
1.966
3117
0.959
3.000
3694
5.987
5.000
282
30.937
24.946
93
14.657
15.000
385
13.073
15.000
8
0.086
0.200
355
0.006
0.020
2515
0.001
0.020
455
0.219
0.200
434
0.199
0.200
1488
0.176
0.200
1108
0.083
0.200
1061
0.200
0.200
109
0.190
0.200
4
0.177
0.200
23
0.290
0.200
47
0.181
0.200
10
1.202
1.500
1582
0.241
1.500
590
1.715
2.000
2259
2.293
3.000
995
3.293
4.500
858
0.331
0.290
1.675
125
2490
20
92.86
1.6
34.15
3VQ7
38588
38422
2
2
0.08
0.09
1
15.2
7.2
99.57
1.634
1.692
1
95.74
data collection
Blu-Ice
phasing
AMoRE
refinement
REFMAC
5.2.0019
data reduction
MOSFLM
data scaling
SCALA
HIV-1 IN core domain in complex with 4-(1H-pyrrol-1-yl)aniline
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
A
THR
93
A
THR
39
HELX_P
A
TRP
108
A
TRP
54
1
1
16
A
GLY
118
A
GLY
64
HELX_P
A
SER
123
A
SER
69
1
2
6
A
SER
123
A
SER
69
HELX_P
A
GLY
134
A
GLY
80
1
3
12
A
ILE
151
A
ILE
97
HELX_P
A
ARG
166
A
ARG
112
1
4
16
A
ASP
167
A
ASP
113
HELX_P
A
ALA
169
A
ALA
115
5
5
3
A
HIS
171
A
HIS
117
HELX_P
A
LYS
186
A
LYS
132
1
6
16
A
ALA
196
A
ALA
142
HELX_P
A
ALA
205
A
ALA
151
1
7
10
B
THR
93
B
THR
39
HELX_P
B
TRP
108
B
TRP
54
1
8
16
B
GLY
118
B
GLY
64
HELX_P
B
THR
122
B
THR
68
5
9
5
B
SER
123
B
SER
69
HELX_P
B
GLY
134
B
GLY
80
1
10
12
B
MET
154
B
MET
100
HELX_P
B
ARG
166
B
ARG
112
1
11
13
B
ASP
167
B
ASP
113
HELX_P
B
ALA
169
B
ALA
115
5
12
3
B
HIS
171
B
HIS
117
HELX_P
B
LYS
186
B
LYS
132
1
13
16
B
SER
195
B
SER
141
HELX_P
B
GLN
209
B
GLN
155
1
14
15
covale
1.429
both
sing
C
GLC
1
C
C1
GLC
1_555
C
FRU
2
C
O2
FRU
1_555
metalc
2.547
A
CYS
65
A
SG
CYS
11
1_555
A
CD
1001
D
CD
CD
1_555
metalc
2.487
A
CYS
65
A
SG
CYS
11
1_555
A
CD
1002
E
CD
CD
1_555
metalc
2.321
A
HIS
67
A
NE2
HIS
13
1_555
A
CD
1001
D
CD
CD
1_555
metalc
1.820
A
GLU
92
A
OE1
GLU
38
1_555
A
CD
1001
D
CD
CD
1_555
metalc
2.531
A
GLU
92
A
OE2
GLU
38
1_555
A
CD
1002
E
CD
CD
1_555
metalc
2.435
A
ASP
116
A
OD2
ASP
62
1_555
A
CD
1002
E
CD
CD
1_555
metalc
2.320
A
CD
1001
D
CD
CD
1_555
A
HOH
1155
L
O
HOH
1_555
metalc
2.649
A
CD
1002
E
CD
CD
1_555
A
HOH
1101
L
O
HOH
1_555
metalc
2.239
A
CD
1002
E
CD
CD
1_555
A
HOH
1117
L
O
HOH
1_555
metalc
2.619
B
CYS
65
B
SG
CYS
11
1_555
B
CD
301
H
CD
CD
1_555
metalc
2.540
B
CYS
65
B
SG
CYS
11
1_555
B
CD
302
I
CD
CD
1_555
metalc
2.230
B
HIS
67
B
NE2
HIS
13
1_555
B
CD
301
H
CD
CD
1_555
metalc
2.243
B
GLU
92
B
OE1
GLU
38
1_555
B
CD
301
H
CD
CD
1_555
metalc
2.186
B
GLU
92
B
OE2
GLU
38
1_555
B
CD
302
I
CD
CD
1_555
metalc
2.430
B
ASP
116
B
OD2
ASP
62
1_555
B
CD
302
I
CD
CD
1_555
metalc
2.537
B
CD
301
H
CD
CD
1_555
B
HOH
440
M
O
HOH
1_555
metalc
2.496
B
CD
301
H
CD
CD
1_555
B
HOH
445
M
O
HOH
1_555
metalc
2.195
B
CD
301
H
CD
CD
1_555
B
HOH
459
M
O
HOH
1_555
metalc
2.338
B
CD
302
I
CD
CD
1_555
B
HOH
424
M
O
HOH
1_555
metalc
2.610
B
CD
302
I
CD
CD
1_555
B
HOH
440
M
O
HOH
1_555
TRANSFERASE/TRANSFERASE INHIBITOR
RNaseH, DNA binding, DNA cleavage, DNA integration, TRANSFERASE-TRANSFERASE INHIBITOR complex
Q72498_9HIV1
UNP
1
770
Q72498
DCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAG
IKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKE
770
927
3VQ7
55
212
Q72498
A
1
1
158
770
927
3VQ7
55
212
Q72498
B
1
1
158
1
CYS
engineered mutation
SER
56
3VQ7
A
Q72498
UNP
771
2
1
TRP
engineered mutation
ASP
131
3VQ7
A
Q72498
UNP
846
77
1
PHE
engineered mutation
ASP
139
3VQ7
A
Q72498
UNP
854
85
1
PHE
engineered mutation
HIS
185
3VQ7
A
Q72498
UNP
900
131
2
CYS
engineered mutation
SER
56
3VQ7
B
Q72498
UNP
771
2
2
TRP
engineered mutation
ASP
131
3VQ7
B
Q72498
UNP
846
77
2
PHE
engineered mutation
ASP
139
3VQ7
B
Q72498
UNP
854
85
2
PHE
engineered mutation
HIS
185
3VQ7
B
Q72498
UNP
900
131
5
2
5
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
A
ILE
84
A
ILE
30
A
ILE
89
A
ILE
35
A
LYS
71
A
LYS
17
A
HIS
78
A
HIS
24
A
ILE
60
A
ILE
6
A
LEU
68
A
LEU
14
A
THR
112
A
THR
58
A
THR
115
A
THR
61
A
LYS
136
A
LYS
82
A
ASP
139
A
ASP
85
A
ARG
187
A
ARG
133
A
LYS
188
A
LYS
134
A
TYR
194
A
TYR
140
A
SER
195
A
SER
141
B
ILE
84
B
ILE
30
B
ILE
89
B
ILE
35
B
LYS
71
B
LYS
17
B
HIS
78
B
HIS
24
B
ILE
60
B
ILE
6
B
LEU
68
B
LEU
14
B
THR
112
B
THR
58
B
HIS
114
B
HIS
60
B
LYS
136
B
LYS
82
B
GLU
138
B
GLU
84
19
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