0.016429
0.000000
0.000000
0.000000
0.015816
0.000000
0.000000
0.000000
0.012196
0.00000
0.00000
0.00000
Wielens, J.
Chalmers, D.K.
Parker, M.W.
Scanlon, M.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
60.868
63.227
81.996
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C9 H7 F O4
198.148
6-fluoro-4H-1,3-benzodioxine-8-carboxylic acid
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
F
Y
90
N
C
Y
91
N
C
Y
92
N
C
N
93
N
C
N
94
N
O
N
95
N
O
Y
96
N
C
Y
97
N
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
O
Y
102
N
C
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
N
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
S
C
N
161
N
C
N
162
N
O
N
163
N
C
Y
164
N
C
Y
165
N
N
Y
166
N
C
Y
167
N
C
Y
168
N
N
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
S
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
N
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
S
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
S
N
327
N
O
N
328
N
O
N
329
N
O
N
330
N
O
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
R
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
N
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
N
386
N
O
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
N
404
N
C
N
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
Y
90
N
doub
Y
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
doub
Y
95
N
doub
Y
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
Y
162
N
sing
Y
163
N
doub
Y
164
N
doub
N
165
N
sing
Y
166
N
sing
N
167
N
sing
Y
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
Y
270
N
doub
Y
271
N
sing
Y
272
N
sing
N
273
N
sing
Y
274
N
doub
N
275
N
sing
Y
276
N
doub
N
277
N
sing
Y
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
US
J Biomol Screen
1087-0571
18
147
159
10.1177/1087057112465979
23139382
Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
2013
10.2210/pdb3vqb/pdb
pdb_00003vqb
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2007-11-23
MAR CCD 165 mm
double mirror
SINGLE WAVELENGTH
M
x-ray
1
0.95361
1.0
MX1
Australian Synchrotron
0.95361
SYNCHROTRON
AUSTRALIAN SYNCHROTRON BEAMLINE MX1
17248.518
POL polyprotein
integrase core domain, UNP residues 770-927
C56S, W131D, F139D, F185H
2
man
polymer
112.411
CADMIUM ION
4
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
198.148
6-fluoro-4H-1,3-benzodioxine-8-carboxylic acid
1
syn
non-polymer
18.015
water
65
nat
water
no
no
DSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACDWAG
IKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDIQTKE
DSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACDWAG
IKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDIQTKE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NL43
sample
pol
11676
Human immunodeficiency virus 1
562
Escherichia coli
BL21(DE3)
Plasmid
PeT23b+
1
2.29
46.21
VAPOR DIFFUSION, HANGING DROP
5.6
1.6M AmSO4, 0.1M Na Citrate pH 5.6, 50mM CdCl2, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-01-30
1
1
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2012-03-21
REL
REL
CD
CADMIUM ION
SO4
SULFATE ION
FBG
6-fluoro-4H-1,3-benzodioxine-8-carboxylic acid
HOH
water
3L3U
PDB ENTRY 3l3u
PDB
experimental model
CD
3
2
CD
CD
301
A
CD
4
2
CD
CD
302
A
SO4
1
3
SO4
SO4
303
A
FBC
1
4
FBG
FBG
304
A
CD
1
2
CD
CD
301
B
CD
2
2
CD
CD
302
B
HOH
1
5
HOH
HOH
401
A
HOH
5
5
HOH
HOH
402
A
HOH
6
5
HOH
HOH
403
A
HOH
8
5
HOH
HOH
404
A
HOH
14
5
HOH
HOH
405
A
HOH
16
5
HOH
HOH
406
A
HOH
17
5
HOH
HOH
407
A
HOH
18
5
HOH
HOH
408
A
HOH
19
5
HOH
HOH
409
A
HOH
20
5
HOH
HOH
410
A
HOH
22
5
HOH
HOH
411
A
HOH
23
5
HOH
HOH
412
A
HOH
25
5
HOH
HOH
413
A
HOH
26
5
HOH
HOH
414
A
HOH
27
5
HOH
HOH
415
A
HOH
30
5
HOH
HOH
416
A
HOH
33
5
HOH
HOH
417
A
HOH
34
5
HOH
HOH
418
A
HOH
36
5
HOH
HOH
419
A
HOH
38
5
HOH
HOH
420
A
HOH
40
5
HOH
HOH
421
A
HOH
41
5
HOH
HOH
422
A
HOH
45
5
HOH
HOH
423
A
HOH
46
5
HOH
HOH
424
A
HOH
47
5
HOH
HOH
425
A
HOH
50
5
HOH
HOH
426
A
HOH
51
5
HOH
HOH
427
A
HOH
52
5
HOH
HOH
428
A
HOH
53
5
HOH
HOH
429
A
HOH
56
5
HOH
HOH
430
A
HOH
57
5
HOH
HOH
431
A
HOH
58
5
HOH
HOH
432
A
HOH
59
5
HOH
HOH
433
A
HOH
60
5
HOH
HOH
434
A
HOH
62
5
HOH
HOH
435
A
HOH
2
5
HOH
HOH
401
B
HOH
3
5
HOH
HOH
402
B
HOH
4
5
HOH
HOH
403
B
HOH
7
5
HOH
HOH
404
B
HOH
9
5
HOH
HOH
405
B
HOH
10
5
HOH
HOH
406
B
HOH
11
5
HOH
HOH
407
B
HOH
12
5
HOH
HOH
408
B
HOH
13
5
HOH
HOH
409
B
HOH
15
5
HOH
HOH
410
B
HOH
21
5
HOH
HOH
411
B
HOH
24
5
HOH
HOH
412
B
HOH
28
5
HOH
HOH
413
B
HOH
29
5
HOH
HOH
414
B
HOH
31
5
HOH
HOH
415
B
HOH
32
5
HOH
HOH
416
B
HOH
35
5
HOH
HOH
417
B
HOH
37
5
HOH
HOH
418
B
HOH
39
5
HOH
HOH
419
B
HOH
42
5
HOH
HOH
420
B
HOH
43
5
HOH
HOH
421
B
HOH
44
5
HOH
HOH
422
B
HOH
48
5
HOH
HOH
423
B
HOH
49
5
HOH
HOH
424
B
HOH
54
5
HOH
HOH
425
B
HOH
55
5
HOH
HOH
426
B
HOH
61
5
HOH
HOH
427
B
HOH
63
5
HOH
HOH
428
B
HOH
64
5
HOH
HOH
429
B
HOH
65
5
HOH
HOH
430
B
n
1
55
A
n
2
56
A
SER
57
n
3
SER
57
A
PRO
58
n
4
PRO
58
A
GLY
59
n
5
GLY
59
A
ILE
60
n
6
ILE
60
A
TRP
61
n
7
TRP
61
A
GLN
62
n
8
GLN
62
A
LEU
63
n
9
LEU
63
A
ASP
64
n
10
ASP
64
A
CYS
65
n
11
CYS
65
A
THR
66
n
12
THR
66
A
HIS
67
n
13
HIS
67
A
LEU
68
n
14
LEU
68
A
GLU
69
n
15
GLU
69
A
GLY
70
n
16
GLY
70
A
LYS
71
n
17
LYS
71
A
VAL
72
n
18
VAL
72
A
ILE
73
n
19
ILE
73
A
LEU
74
n
20
LEU
74
A
VAL
75
n
21
VAL
75
A
ALA
76
n
22
ALA
76
A
VAL
77
n
23
VAL
77
A
HIS
78
n
24
HIS
78
A
VAL
79
n
25
VAL
79
A
ALA
80
n
26
ALA
80
A
SER
81
n
27
SER
81
A
GLY
82
n
28
GLY
82
A
TYR
83
n
29
TYR
83
A
ILE
84
n
30
ILE
84
A
GLU
85
n
31
GLU
85
A
ALA
86
n
32
ALA
86
A
GLU
87
n
33
GLU
87
A
VAL
88
n
34
VAL
88
A
ILE
89
n
35
ILE
89
A
PRO
90
n
36
PRO
90
A
ALA
91
n
37
ALA
91
A
GLU
92
n
38
GLU
92
A
THR
93
n
39
THR
93
A
GLY
94
n
40
GLY
94
A
GLN
95
n
41
GLN
95
A
GLU
96
n
42
GLU
96
A
THR
97
n
43
THR
97
A
ALA
98
n
44
ALA
98
A
TYR
99
n
45
TYR
99
A
PHE
100
n
46
PHE
100
A
LEU
101
n
47
LEU
101
A
LEU
102
n
48
LEU
102
A
LYS
103
n
49
LYS
103
A
LEU
104
n
50
LEU
104
A
ALA
105
n
51
ALA
105
A
GLY
106
n
52
GLY
106
A
ARG
107
n
53
ARG
107
A
TRP
108
n
54
TRP
108
A
PRO
109
n
55
PRO
109
A
VAL
110
n
56
VAL
110
A
LYS
111
n
57
LYS
111
A
THR
112
n
58
THR
112
A
VAL
113
n
59
VAL
113
A
HIS
114
n
60
HIS
114
A
THR
115
n
61
THR
115
A
ASP
116
n
62
ASP
116
A
ASN
117
n
63
ASN
117
A
GLY
118
n
64
GLY
118
A
SER
119
n
65
SER
119
A
ASN
120
n
66
ASN
120
A
PHE
121
n
67
PHE
121
A
THR
122
n
68
THR
122
A
SER
123
n
69
SER
123
A
THR
124
n
70
THR
124
A
THR
125
n
71
THR
125
A
VAL
126
n
72
VAL
126
A
LYS
127
n
73
LYS
127
A
ALA
128
n
74
ALA
128
A
ALA
129
n
75
ALA
129
A
CYS
130
n
76
CYS
130
A
ASP
131
n
77
ASP
131
A
TRP
132
n
78
TRP
132
A
ALA
133
n
79
ALA
133
A
GLY
134
n
80
GLY
134
A
ILE
135
n
81
ILE
135
A
LYS
136
n
82
LYS
136
A
GLN
137
n
83
GLN
137
A
GLU
138
n
84
GLU
138
A
ASP
139
n
85
ASP
139
A
GLY
140
n
86
GLY
140
A
ILE
141
n
87
ILE
141
A
PRO
142
n
88
PRO
142
A
n
89
143
A
n
90
144
A
n
91
145
A
n
92
146
A
n
93
147
A
n
94
148
A
n
95
149
A
n
96
150
A
n
97
151
A
n
98
152
A
SER
153
n
99
SER
153
A
MET
154
n
100
MET
154
A
ASN
155
n
101
ASN
155
A
LYS
156
n
102
LYS
156
A
GLU
157
n
103
GLU
157
A
LEU
158
n
104
LEU
158
A
LYS
159
n
105
LYS
159
A
LYS
160
n
106
LYS
160
A
ILE
161
n
107
ILE
161
A
ILE
162
n
108
ILE
162
A
GLY
163
n
109
GLY
163
A
GLN
164
n
110
GLN
164
A
VAL
165
n
111
VAL
165
A
ARG
166
n
112
ARG
166
A
ASP
167
n
113
ASP
167
A
GLN
168
n
114
GLN
168
A
ALA
169
n
115
ALA
169
A
GLU
170
n
116
GLU
170
A
HIS
171
n
117
HIS
171
A
LEU
172
n
118
LEU
172
A
LYS
173
n
119
LYS
173
A
THR
174
n
120
THR
174
A
ALA
175
n
121
ALA
175
A
VAL
176
n
122
VAL
176
A
GLN
177
n
123
GLN
177
A
MET
178
n
124
MET
178
A
ALA
179
n
125
ALA
179
A
VAL
180
n
126
VAL
180
A
PHE
181
n
127
PHE
181
A
ILE
182
n
128
ILE
182
A
HIS
183
n
129
HIS
183
A
ASN
184
n
130
ASN
184
A
HIS
185
n
131
HIS
185
A
LYS
186
n
132
LYS
186
A
ARG
187
n
133
ARG
187
A
LYS
188
n
134
LYS
188
A
GLY
189
n
135
GLY
189
A
GLY
190
n
136
GLY
190
A
ILE
191
n
137
ILE
191
A
GLY
192
n
138
GLY
192
A
GLY
193
n
139
GLY
193
A
TYR
194
n
140
TYR
194
A
SER
195
n
141
SER
195
A
ALA
196
n
142
ALA
196
A
GLY
197
n
143
GLY
197
A
GLU
198
n
144
GLU
198
A
ARG
199
n
145
ARG
199
A
ILE
200
n
146
ILE
200
A
VAL
201
n
147
VAL
201
A
ASP
202
n
148
ASP
202
A
ILE
203
n
149
ILE
203
A
ILE
204
n
150
ILE
204
A
ALA
205
n
151
ALA
205
A
THR
206
n
152
THR
206
A
ASP
207
n
153
ASP
207
A
ILE
208
n
154
ILE
208
A
n
155
209
A
n
156
210
A
n
157
211
A
n
158
212
A
n
1
55
B
n
2
56
B
SER
57
n
3
SER
57
B
PRO
58
n
4
PRO
58
B
GLY
59
n
5
GLY
59
B
ILE
60
n
6
ILE
60
B
TRP
61
n
7
TRP
61
B
GLN
62
n
8
GLN
62
B
LEU
63
n
9
LEU
63
B
ASP
64
n
10
ASP
64
B
CYS
65
n
11
CYS
65
B
THR
66
n
12
THR
66
B
HIS
67
n
13
HIS
67
B
LEU
68
n
14
LEU
68
B
GLU
69
n
15
GLU
69
B
GLY
70
n
16
GLY
70
B
LYS
71
n
17
LYS
71
B
VAL
72
n
18
VAL
72
B
ILE
73
n
19
ILE
73
B
LEU
74
n
20
LEU
74
B
VAL
75
n
21
VAL
75
B
ALA
76
n
22
ALA
76
B
VAL
77
n
23
VAL
77
B
HIS
78
n
24
HIS
78
B
VAL
79
n
25
VAL
79
B
ALA
80
n
26
ALA
80
B
SER
81
n
27
SER
81
B
GLY
82
n
28
GLY
82
B
TYR
83
n
29
TYR
83
B
ILE
84
n
30
ILE
84
B
GLU
85
n
31
GLU
85
B
ALA
86
n
32
ALA
86
B
GLU
87
n
33
GLU
87
B
VAL
88
n
34
VAL
88
B
ILE
89
n
35
ILE
89
B
PRO
90
n
36
PRO
90
B
ALA
91
n
37
ALA
91
B
GLU
92
n
38
GLU
92
B
THR
93
n
39
THR
93
B
GLY
94
n
40
GLY
94
B
GLN
95
n
41
GLN
95
B
GLU
96
n
42
GLU
96
B
THR
97
n
43
THR
97
B
ALA
98
n
44
ALA
98
B
TYR
99
n
45
TYR
99
B
PHE
100
n
46
PHE
100
B
LEU
101
n
47
LEU
101
B
LEU
102
n
48
LEU
102
B
LYS
103
n
49
LYS
103
B
LEU
104
n
50
LEU
104
B
ALA
105
n
51
ALA
105
B
GLY
106
n
52
GLY
106
B
ARG
107
n
53
ARG
107
B
TRP
108
n
54
TRP
108
B
PRO
109
n
55
PRO
109
B
VAL
110
n
56
VAL
110
B
LYS
111
n
57
LYS
111
B
THR
112
n
58
THR
112
B
VAL
113
n
59
VAL
113
B
HIS
114
n
60
HIS
114
B
THR
115
n
61
THR
115
B
ASP
116
n
62
ASP
116
B
ASN
117
n
63
ASN
117
B
GLY
118
n
64
GLY
118
B
SER
119
n
65
SER
119
B
ASN
120
n
66
ASN
120
B
PHE
121
n
67
PHE
121
B
THR
122
n
68
THR
122
B
SER
123
n
69
SER
123
B
THR
124
n
70
THR
124
B
THR
125
n
71
THR
125
B
VAL
126
n
72
VAL
126
B
LYS
127
n
73
LYS
127
B
ALA
128
n
74
ALA
128
B
ALA
129
n
75
ALA
129
B
CYS
130
n
76
CYS
130
B
ASP
131
n
77
ASP
131
B
TRP
132
n
78
TRP
132
B
ALA
133
n
79
ALA
133
B
GLY
134
n
80
GLY
134
B
ILE
135
n
81
ILE
135
B
LYS
136
n
82
LYS
136
B
GLN
137
n
83
GLN
137
B
GLU
138
n
84
GLU
138
B
n
85
139
B
n
86
140
B
n
87
141
B
n
88
142
B
n
89
143
B
n
90
144
B
n
91
145
B
n
92
146
B
n
93
147
B
n
94
148
B
n
95
149
B
n
96
150
B
n
97
151
B
GLU
152
n
98
GLU
152
B
SER
153
n
99
SER
153
B
MET
154
n
100
MET
154
B
ASN
155
n
101
ASN
155
B
LYS
156
n
102
LYS
156
B
GLU
157
n
103
GLU
157
B
LEU
158
n
104
LEU
158
B
LYS
159
n
105
LYS
159
B
LYS
160
n
106
LYS
160
B
ILE
161
n
107
ILE
161
B
ILE
162
n
108
ILE
162
B
GLY
163
n
109
GLY
163
B
GLN
164
n
110
GLN
164
B
VAL
165
n
111
VAL
165
B
ARG
166
n
112
ARG
166
B
ASP
167
n
113
ASP
167
B
GLN
168
n
114
GLN
168
B
ALA
169
n
115
ALA
169
B
GLU
170
n
116
GLU
170
B
HIS
171
n
117
HIS
171
B
LEU
172
n
118
LEU
172
B
LYS
173
n
119
LYS
173
B
THR
174
n
120
THR
174
B
ALA
175
n
121
ALA
175
B
VAL
176
n
122
VAL
176
B
GLN
177
n
123
GLN
177
B
MET
178
n
124
MET
178
B
ALA
179
n
125
ALA
179
B
VAL
180
n
126
VAL
180
B
PHE
181
n
127
PHE
181
B
ILE
182
n
128
ILE
182
B
HIS
183
n
129
HIS
183
B
ASN
184
n
130
ASN
184
B
HIS
185
n
131
HIS
185
B
LYS
186
n
132
LYS
186
B
ARG
187
n
133
ARG
187
B
LYS
188
n
134
LYS
188
B
GLY
189
n
135
GLY
189
B
GLY
190
n
136
GLY
190
B
ILE
191
n
137
ILE
191
B
GLY
192
n
138
GLY
192
B
GLY
193
n
139
GLY
193
B
TYR
194
n
140
TYR
194
B
SER
195
n
141
SER
195
B
ALA
196
n
142
ALA
196
B
GLY
197
n
143
GLY
197
B
GLU
198
n
144
GLU
198
B
ARG
199
n
145
ARG
199
B
ILE
200
n
146
ILE
200
B
VAL
201
n
147
VAL
201
B
ASP
202
n
148
ASP
202
B
ILE
203
n
149
ILE
203
B
ILE
204
n
150
ILE
204
B
ALA
205
n
151
ALA
205
B
THR
206
n
152
THR
206
B
ASP
207
n
153
ASP
207
B
ILE
208
n
154
ILE
208
B
GLN
209
n
155
GLN
209
B
n
156
210
B
n
157
211
B
n
158
212
B
author_and_software_defined_assembly
PISA
2
dimeric
3640
-60
12940
A
CYS
65
A
SG
CYS
11
1_555
A
CD
301
C
CD
CD
1_555
A
HIS
67
A
NE2
HIS
13
1_555
111.6
A
CYS
65
A
SG
CYS
11
1_555
A
CD
301
C
CD
CD
1_555
A
GLU
92
A
OE1
GLU
38
1_555
111.5
A
HIS
67
A
NE2
HIS
13
1_555
A
CD
301
C
CD
CD
1_555
A
GLU
92
A
OE1
GLU
38
1_555
84.9
A
CYS
65
A
SG
CYS
11
1_555
A
CD
302
D
CD
CD
1_555
A
GLU
92
A
OE2
GLU
38
1_555
91.6
A
CYS
65
A
SG
CYS
11
1_555
A
CD
302
D
CD
CD
1_555
A
ASP
116
A
OD2
ASP
62
1_555
102.0
A
GLU
92
A
OE2
GLU
38
1_555
A
CD
302
D
CD
CD
1_555
A
ASP
116
A
OD2
ASP
62
1_555
166.4
A
CYS
65
A
SG
CYS
11
1_555
A
CD
302
D
CD
CD
1_555
A
HOH
426
I
O
HOH
1_555
163.0
A
GLU
92
A
OE2
GLU
38
1_555
A
CD
302
D
CD
CD
1_555
A
HOH
426
I
O
HOH
1_555
78.8
A
ASP
116
A
OD2
ASP
62
1_555
A
CD
302
D
CD
CD
1_555
A
HOH
426
I
O
HOH
1_555
87.7
B
CYS
65
B
SG
CYS
11
1_555
B
CD
301
G
CD
CD
1_555
B
GLU
92
B
OE2
GLU
38
1_555
89.4
B
CYS
65
B
SG
CYS
11
1_555
B
CD
301
G
CD
CD
1_555
B
ASP
116
B
OD2
ASP
62
1_555
102.2
B
GLU
92
B
OE2
GLU
38
1_555
B
CD
301
G
CD
CD
1_555
B
ASP
116
B
OD2
ASP
62
1_555
166.3
B
CYS
65
B
SG
CYS
11
1_555
B
CD
301
G
CD
CD
1_555
B
HOH
415
J
O
HOH
1_555
172.4
B
GLU
92
B
OE2
GLU
38
1_555
B
CD
301
G
CD
CD
1_555
B
HOH
415
J
O
HOH
1_555
88.3
B
ASP
116
B
OD2
ASP
62
1_555
B
CD
301
G
CD
CD
1_555
B
HOH
415
J
O
HOH
1_555
79.3
B
CYS
65
B
SG
CYS
11
1_555
B
CD
302
H
CD
CD
1_555
B
GLU
92
B
OE1
GLU
38
1_555
96.7
B
CYS
65
B
SG
CYS
11
1_555
B
CD
302
H
CD
CD
1_555
B
HOH
426
J
O
HOH
1_555
155.8
B
GLU
92
B
OE1
GLU
38
1_555
B
CD
302
H
CD
CD
1_555
B
HOH
426
J
O
HOH
1_555
80.9
B
CYS
65
B
SG
CYS
11
1_555
B
CD
302
H
CD
CD
1_555
B
HOH
430
J
O
HOH
1_555
75.9
B
GLU
92
B
OE1
GLU
38
1_555
B
CD
302
H
CD
CD
1_555
B
HOH
430
J
O
HOH
1_555
119.9
B
HOH
426
J
O
HOH
1_555
B
CD
302
H
CD
CD
1_555
B
HOH
430
J
O
HOH
1_555
84.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
85
A
O
GLU
31
A
N
ALA
76
A
N
ALA
22
A
O
ILE
73
A
O
ILE
19
A
N
THR
66
A
N
THR
12
A
N
TRP
61
A
N
TRP
7
A
O
HIS
114
A
O
HIS
60
A
N
VAL
113
A
N
VAL
59
A
O
GLU
138
A
O
GLU
84
A
N
LYS
188
A
N
LYS
134
A
O
TYR
194
A
O
TYR
140
B
O
GLU
85
B
O
GLU
31
B
N
ALA
76
B
N
ALA
22
B
O
VAL
75
B
O
VAL
21
B
N
ASP
64
B
N
ASP
10
B
N
LEU
63
B
N
LEU
9
B
O
HIS
114
B
O
HIS
60
B
N
VAL
113
B
N
VAL
59
B
O
LYS
136
B
O
LYS
82
B
N
LYS
188
B
N
LYS
134
B
O
TYR
194
B
O
TYR
140
1
A
ASP
55
A
ASP
1
1
Y
1
A
SER
56
A
SER
2
1
Y
1
A
TYR
143
A
TYR
89
1
Y
1
A
ASN
144
A
ASN
90
1
Y
1
A
PRO
145
A
PRO
91
1
Y
1
A
GLN
146
A
GLN
92
1
Y
1
A
SER
147
A
SER
93
1
Y
1
A
GLN
148
A
GLN
94
1
Y
1
A
GLY
149
A
GLY
95
1
Y
1
A
VAL
150
A
VAL
96
1
Y
1
A
ILE
151
A
ILE
97
1
Y
1
A
GLU
152
A
GLU
98
1
Y
1
A
GLN
209
A
GLN
155
1
Y
1
A
THR
210
A
THR
156
1
Y
1
A
LYS
211
A
LYS
157
1
Y
1
A
GLU
212
A
GLU
158
1
Y
1
B
ASP
55
B
ASP
1
1
Y
1
B
SER
56
B
SER
2
1
Y
1
B
ASP
139
B
ASP
85
1
Y
1
B
GLY
140
B
GLY
86
1
Y
1
B
ILE
141
B
ILE
87
1
Y
1
B
PRO
142
B
PRO
88
1
Y
1
B
TYR
143
B
TYR
89
1
Y
1
B
ASN
144
B
ASN
90
1
Y
1
B
PRO
145
B
PRO
91
1
Y
1
B
GLN
146
B
GLN
92
1
Y
1
B
SER
147
B
SER
93
1
Y
1
B
GLN
148
B
GLN
94
1
Y
1
B
GLY
149
B
GLY
95
1
Y
1
B
VAL
150
B
VAL
96
1
Y
1
B
ILE
151
B
ILE
97
1
Y
1
B
THR
210
B
THR
156
1
Y
1
B
LYS
211
B
LYS
157
1
Y
1
B
GLU
212
B
GLU
158
1
Y
1
B
B
CE1
CD
HIS
CD
67
302
2.10
1
A
A
CG
CD2
HIS
HIS
67
67
0.055
0.009
1.354
1.409
N
1
A
A
CG
CD2
HIS
HIS
185
185
0.057
0.009
1.354
1.411
N
1
B
B
CD
OE1
GLU
GLU
92
92
0.080
0.011
1.252
1.332
N
1
B
B
CE2
CD2
TRP
TRP
132
132
0.081
0.012
1.409
1.490
N
1
A
ASN
117
59.67
18.07
37.300
0.09
0.00
0.00
2.01
0.00
-2.10
0.948
0.923
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.25232
0.20112
0.2178
0.20364
2.10
34.40
981
18069
18050
5.2
99.89
4.861
0.131
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.215
0.191
0.80
0.80
1.20
PDB ENTRY 3l3u
MAXIMUM LIKELIHOOD
MASK
2.10
34.40
65
2249
23
0
2161
0.019
0.020
2220
2.022
1.943
3004
6.626
5.000
278
36.324
24.945
91
18.491
15.000
385
20.110
15.000
8
0.213
0.200
343
0.009
0.021
1632
0.309
0.227
2.155
63
1184
20
100.00
2.1
43.85
3VQB
19097
19079
2
2
0.078
0.085
1
17.7
6.4
99.9
0.367
2.1
2.21
3.7
2720
0.399
1
6.5
100
data collection
Blu-Ice
phasing
AMoRE
refinement
REFMAC
5.6.0117
data reduction
MOSFLM
data scaling
SCALA
HIV-1 IN core domain in complex with 6-fluoro-4H-1,3-benzodioxine-8-carboxylic acid
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
2
N
N
2
N
N
5
N
N
5
N
N
A
THR
93
A
THR
39
HELX_P
A
TRP
108
A
TRP
54
1
1
16
A
GLY
118
A
GLY
64
HELX_P
A
SER
123
A
SER
69
1
2
6
A
SER
123
A
SER
69
HELX_P
A
GLY
134
A
GLY
80
1
3
12
A
MET
154
A
MET
100
HELX_P
A
ARG
166
A
ARG
112
1
4
13
A
ASP
167
A
ASP
113
HELX_P
A
ALA
169
A
ALA
115
5
5
3
A
HIS
171
A
HIS
117
HELX_P
A
LYS
186
A
LYS
132
1
6
16
A
ALA
196
A
ALA
142
HELX_P
A
ALA
205
A
ALA
151
1
7
10
B
THR
93
B
THR
39
HELX_P
B
TRP
108
B
TRP
54
1
8
16
B
SER
123
B
SER
69
HELX_P
B
GLY
134
B
GLY
80
1
9
12
B
SER
153
B
SER
99
HELX_P
B
ARG
166
B
ARG
112
1
10
14
B
ASP
167
B
ASP
113
HELX_P
B
ALA
169
B
ALA
115
5
11
3
B
HIS
171
B
HIS
117
HELX_P
B
LYS
186
B
LYS
132
1
12
16
B
ALA
196
B
ALA
142
HELX_P
B
GLN
209
B
GLN
155
1
13
14
metalc
2.640
A
CYS
65
A
SG
CYS
11
1_555
A
CD
301
C
CD
CD
1_555
metalc
2.775
A
CYS
65
A
SG
CYS
11
1_555
A
CD
302
D
CD
CD
1_555
metalc
2.472
A
HIS
67
A
NE2
HIS
13
1_555
A
CD
301
C
CD
CD
1_555
metalc
2.024
A
GLU
92
A
OE1
GLU
38
1_555
A
CD
301
C
CD
CD
1_555
metalc
2.356
A
GLU
92
A
OE2
GLU
38
1_555
A
CD
302
D
CD
CD
1_555
metalc
2.461
A
ASP
116
A
OD2
ASP
62
1_555
A
CD
302
D
CD
CD
1_555
metalc
2.477
A
CD
302
D
CD
CD
1_555
A
HOH
426
I
O
HOH
1_555
metalc
2.685
B
CYS
65
B
SG
CYS
11
1_555
B
CD
301
G
CD
CD
1_555
metalc
2.801
B
CYS
65
B
SG
CYS
11
1_555
B
CD
302
H
CD
CD
1_555
metalc
1.979
B
GLU
92
B
OE2
GLU
38
1_555
B
CD
301
G
CD
CD
1_555
metalc
2.039
B
GLU
92
B
OE1
GLU
38
1_555
B
CD
302
H
CD
CD
1_555
metalc
2.073
B
ASP
116
B
OD2
ASP
62
1_555
B
CD
301
G
CD
CD
1_555
metalc
2.632
B
CD
301
G
CD
CD
1_555
B
HOH
415
J
O
HOH
1_555
metalc
2.639
B
CD
302
H
CD
CD
1_555
B
HOH
426
J
O
HOH
1_555
metalc
2.353
B
CD
302
H
CD
CD
1_555
B
HOH
430
J
O
HOH
1_555
TRANSFERASE/TRANSFERASE INHIBITOR
RNaseH, DNA binding, DNA cleavage, DNA integration, TRANSFERASE-TRANSFERASE INHIBITOR complex
Q72498_9HIV1
UNP
1
770
Q72498
DCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAG
IKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKE
770
927
3VQB
55
212
Q72498
A
1
1
158
770
927
3VQB
55
212
Q72498
B
1
1
158
1
CYS
engineered mutation
SER
56
3VQB
A
Q72498
UNP
771
2
1
TRP
engineered mutation
ASP
131
3VQB
A
Q72498
UNP
846
77
1
PHE
engineered mutation
ASP
139
3VQB
A
Q72498
UNP
854
85
1
PHE
engineered mutation
HIS
185
3VQB
A
Q72498
UNP
900
131
2
CYS
engineered mutation
SER
56
3VQB
B
Q72498
UNP
771
2
2
TRP
engineered mutation
ASP
131
3VQB
B
Q72498
UNP
846
77
2
PHE
engineered mutation
ASP
139
3VQB
B
Q72498
UNP
854
85
2
PHE
engineered mutation
HIS
185
3VQB
B
Q72498
UNP
900
131
5
2
5
2
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
A
ILE
84
A
ILE
30
A
ILE
89
A
ILE
35
A
LYS
71
A
LYS
17
A
HIS
78
A
HIS
24
A
ILE
60
A
ILE
6
A
LEU
68
A
LEU
14
A
THR
112
A
THR
58
A
THR
115
A
THR
61
A
LYS
136
A
LYS
82
A
ASP
139
A
ASP
85
A
ARG
187
A
ARG
133
A
LYS
188
A
LYS
134
A
TYR
194
A
TYR
140
A
SER
195
A
SER
141
B
ILE
84
B
ILE
30
B
ILE
89
B
ILE
35
B
LYS
71
B
LYS
17
B
HIS
78
B
HIS
24
B
ILE
60
B
ILE
6
B
LEU
68
B
LEU
14
B
THR
112
B
THR
58
B
HIS
114
B
HIS
60
B
LYS
136
B
LYS
82
B
GLU
138
B
GLU
84
B
ARG
187
B
ARG
133
B
LYS
188
B
LYS
134
B
TYR
194
B
TYR
140
B
SER
195
B
SER
141
BINDING SITE FOR RESIDUE CD A 301
A
CD
301
Software
5
BINDING SITE FOR RESIDUE CD A 302
A
CD
302
Software
7
BINDING SITE FOR RESIDUE SO4 A 303
A
SO4
303
Software
8
BINDING SITE FOR RESIDUE FBG A 304
A
FBG
304
Software
11
BINDING SITE FOR RESIDUE CD B 301
B
CD
301
Software
7
BINDING SITE FOR RESIDUE CD B 302
B
CD
302
Software
6
A
CYS
65
A
CYS
11
5
1_555
A
HIS
67
A
HIS
13
5
1_555
A
GLU
92
A
GLU
38
5
1_555
A
CD
302
D
CD
5
1_555
B
ASP
131
B
ASP
77
5
4_555
A
CYS
65
A
CYS
11
7
1_555
A
GLU
92
A
GLU
38
7
1_555
A
ASP
116
A
ASP
62
7
1_555
A
CD
301
C
CD
7
1_555
A
HOH
403
I
HOH
7
1_555
A
HOH
426
I
HOH
7
1_555
B
ASP
131
B
ASP
77
7
4_555
A
GLU
69
A
GLU
15
8
1_555
A
LYS
71
A
LYS
17
8
1_555
A
ARG
166
A
ARG
112
8
1_555
A
GLU
170
A
GLU
116
8
1_555
A
HIS
171
A
HIS
117
8
1_555
A
LEU
172
A
LEU
118
8
1_555
A
ARG
187
A
ARG
133
8
4_555
A
HOH
411
I
HOH
8
1_555
A
TYR
83
A
TYR
29
11
1_555
A
ASN
184
A
ASN
130
11
1_555
A
HIS
185
A
HIS
131
11
1_555
A
SER
195
A
SER
141
11
1_555
A
GLY
197
A
GLY
143
11
1_555
A
VAL
201
A
VAL
147
11
1_555
A
HOH
421
I
HOH
11
1_555
B
GLY
106
B
GLY
52
11
1_555
B
ARG
107
B
ARG
53
11
1_555
B
PRO
109
B
PRO
55
11
1_555
B
ILE
204
B
ILE
150
11
1_555
B
CYS
65
B
CYS
11
7
1_555
B
GLU
92
B
GLU
38
7
1_555
B
ASP
116
B
ASP
62
7
1_555
B
CD
302
H
CD
7
1_555
B
HOH
404
J
HOH
7
1_555
B
HOH
415
J
HOH
7
1_555
B
HOH
430
J
HOH
7
1_555
B
CYS
65
B
CYS
11
6
1_555
B
HIS
67
B
HIS
13
6
1_555
B
GLU
92
B
GLU
38
6
1_555
B
CD
301
G
CD
6
1_555
B
HOH
426
J
HOH
6
1_555
B
HOH
430
J
HOH
6
1_555
19
P 21 21 21