0.016531
0.000000
0.009543
0.000000
0.019527
0.000000
0.000000
0.000000
0.034684
0.00000
0.00000
0.00000
Akiyoshi, Y.
Hamada, D.
Goda, N.
Tenno, T.
Narita, H.
Nakagawa, A.
Furuse, M.
Suzuki, M.
Hiroaki, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
120.00
90.00
60.493
51.210
33.291
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
O
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
doub
Y
217
N
sing
Y
218
N
sing
N
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
To be Published
0353
Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
10.2210/pdb3vqf/pdb
pdb_00003vqf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-02-10
ADSC QUANTUM 210r
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
AR-NW12A
Photon Factory
1.0
SYNCHROTRON
PHOTON FACTORY BEAMLINE AR-NW12A
10386.552
E3 ubiquitin-protein ligase LNX
second PDZ domain
1
man
polymer
18.015
water
181
nat
water
no
no
GPLGSDHDDSFHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPESAAHLI
QASERRVHLVVSRQ
GPLGSDHDDSFHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPESAAHLI
QASERRVHLVVSRQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Lnx1
10090
Mus musculus
562
Escherichia coli
BL21(DE3)
PLASMID
pGEX-6P3-PRESAT
1
2.15
42.78
VAPOR DIFFUSION, SITTING DROP
6.5
23% PEG 8000, 0.2M sodium acetate, 0.1M Bis-Tris, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_special_symmetry
struct_ref_seq_dif
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-03-27
1
1
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
PDBJ
Y
PDBJ
2012-03-22
REL
REL
HOH
water
2VWR
PDB
experimental model
HOH
1
2
HOH
HOH
101
A
HOH
2
2
HOH
HOH
102
A
HOH
3
2
HOH
HOH
103
A
HOH
4
2
HOH
HOH
104
A
HOH
5
2
HOH
HOH
105
A
HOH
6
2
HOH
HOH
106
A
HOH
7
2
HOH
HOH
107
A
HOH
8
2
HOH
HOH
108
A
HOH
9
2
HOH
HOH
109
A
HOH
10
2
HOH
HOH
110
A
HOH
11
2
HOH
HOH
111
A
HOH
12
2
HOH
HOH
112
A
HOH
13
2
HOH
HOH
113
A
HOH
14
2
HOH
HOH
114
A
HOH
15
2
HOH
HOH
115
A
HOH
16
2
HOH
HOH
116
A
HOH
17
2
HOH
HOH
117
A
HOH
18
2
HOH
HOH
118
A
HOH
19
2
HOH
HOH
119
A
HOH
20
2
HOH
HOH
120
A
HOH
21
2
HOH
HOH
121
A
HOH
22
2
HOH
HOH
122
A
HOH
23
2
HOH
HOH
123
A
HOH
24
2
HOH
HOH
124
A
HOH
25
2
HOH
HOH
125
A
HOH
26
2
HOH
HOH
126
A
HOH
27
2
HOH
HOH
127
A
HOH
28
2
HOH
HOH
128
A
HOH
29
2
HOH
HOH
129
A
HOH
30
2
HOH
HOH
130
A
HOH
31
2
HOH
HOH
131
A
HOH
32
2
HOH
HOH
132
A
HOH
33
2
HOH
HOH
133
A
HOH
34
2
HOH
HOH
134
A
HOH
35
2
HOH
HOH
135
A
HOH
36
2
HOH
HOH
136
A
HOH
37
2
HOH
HOH
137
A
HOH
38
2
HOH
HOH
138
A
HOH
39
2
HOH
HOH
139
A
HOH
40
2
HOH
HOH
140
A
HOH
41
2
HOH
HOH
141
A
HOH
42
2
HOH
HOH
142
A
HOH
43
2
HOH
HOH
143
A
HOH
44
2
HOH
HOH
144
A
HOH
45
2
HOH
HOH
145
A
HOH
46
2
HOH
HOH
146
A
HOH
47
2
HOH
HOH
147
A
HOH
48
2
HOH
HOH
148
A
HOH
49
2
HOH
HOH
149
A
HOH
50
2
HOH
HOH
150
A
HOH
51
2
HOH
HOH
151
A
HOH
52
2
HOH
HOH
152
A
HOH
53
2
HOH
HOH
153
A
HOH
54
2
HOH
HOH
154
A
HOH
55
2
HOH
HOH
155
A
HOH
56
2
HOH
HOH
156
A
HOH
57
2
HOH
HOH
157
A
HOH
58
2
HOH
HOH
158
A
HOH
59
2
HOH
HOH
159
A
HOH
60
2
HOH
HOH
160
A
HOH
61
2
HOH
HOH
161
A
HOH
62
2
HOH
HOH
162
A
HOH
63
2
HOH
HOH
163
A
HOH
64
2
HOH
HOH
164
A
HOH
65
2
HOH
HOH
165
A
HOH
66
2
HOH
HOH
166
A
HOH
67
2
HOH
HOH
167
A
HOH
68
2
HOH
HOH
168
A
HOH
69
2
HOH
HOH
169
A
HOH
70
2
HOH
HOH
170
A
HOH
71
2
HOH
HOH
171
A
HOH
72
2
HOH
HOH
172
A
HOH
73
2
HOH
HOH
173
A
HOH
74
2
HOH
HOH
174
A
HOH
75
2
HOH
HOH
175
A
HOH
76
2
HOH
HOH
176
A
HOH
77
2
HOH
HOH
177
A
HOH
78
2
HOH
HOH
178
A
HOH
79
2
HOH
HOH
179
A
HOH
80
2
HOH
HOH
180
A
HOH
81
2
HOH
HOH
181
A
HOH
82
2
HOH
HOH
182
A
HOH
83
2
HOH
HOH
183
A
HOH
84
2
HOH
HOH
184
A
HOH
85
2
HOH
HOH
185
A
HOH
86
2
HOH
HOH
186
A
HOH
87
2
HOH
HOH
187
A
HOH
88
2
HOH
HOH
188
A
HOH
89
2
HOH
HOH
189
A
HOH
90
2
HOH
HOH
190
A
HOH
91
2
HOH
HOH
191
A
HOH
92
2
HOH
HOH
192
A
HOH
93
2
HOH
HOH
193
A
HOH
94
2
HOH
HOH
194
A
HOH
95
2
HOH
HOH
195
A
HOH
96
2
HOH
HOH
196
A
HOH
97
2
HOH
HOH
197
A
HOH
98
2
HOH
HOH
198
A
HOH
99
2
HOH
HOH
199
A
HOH
100
2
HOH
HOH
200
A
HOH
101
2
HOH
HOH
201
A
HOH
102
2
HOH
HOH
202
A
HOH
103
2
HOH
HOH
203
A
HOH
104
2
HOH
HOH
204
A
HOH
105
2
HOH
HOH
205
A
HOH
106
2
HOH
HOH
206
A
HOH
107
2
HOH
HOH
207
A
HOH
108
2
HOH
HOH
208
A
HOH
109
2
HOH
HOH
209
A
HOH
110
2
HOH
HOH
210
A
HOH
111
2
HOH
HOH
211
A
HOH
112
2
HOH
HOH
212
A
HOH
113
2
HOH
HOH
213
A
HOH
114
2
HOH
HOH
214
A
HOH
115
2
HOH
HOH
215
A
HOH
116
2
HOH
HOH
216
A
HOH
117
2
HOH
HOH
217
A
HOH
118
2
HOH
HOH
218
A
HOH
119
2
HOH
HOH
219
A
HOH
120
2
HOH
HOH
220
A
HOH
121
2
HOH
HOH
221
A
HOH
122
2
HOH
HOH
222
A
HOH
123
2
HOH
HOH
223
A
HOH
124
2
HOH
HOH
224
A
HOH
125
2
HOH
HOH
225
A
HOH
126
2
HOH
HOH
226
A
HOH
127
2
HOH
HOH
227
A
HOH
128
2
HOH
HOH
228
A
HOH
129
2
HOH
HOH
229
A
HOH
130
2
HOH
HOH
230
A
HOH
131
2
HOH
HOH
231
A
HOH
132
2
HOH
HOH
232
A
HOH
133
2
HOH
HOH
233
A
HOH
134
2
HOH
HOH
234
A
HOH
135
2
HOH
HOH
235
A
HOH
136
2
HOH
HOH
236
A
HOH
137
2
HOH
HOH
237
A
HOH
138
2
HOH
HOH
238
A
HOH
139
2
HOH
HOH
239
A
HOH
140
2
HOH
HOH
240
A
HOH
141
2
HOH
HOH
241
A
HOH
142
2
HOH
HOH
242
A
HOH
143
2
HOH
HOH
243
A
HOH
144
2
HOH
HOH
244
A
HOH
145
2
HOH
HOH
245
A
HOH
146
2
HOH
HOH
246
A
HOH
147
2
HOH
HOH
247
A
HOH
148
2
HOH
HOH
248
A
HOH
149
2
HOH
HOH
249
A
HOH
150
2
HOH
HOH
250
A
HOH
151
2
HOH
HOH
251
A
HOH
152
2
HOH
HOH
252
A
HOH
153
2
HOH
HOH
253
A
HOH
154
2
HOH
HOH
254
A
HOH
155
2
HOH
HOH
255
A
HOH
156
2
HOH
HOH
256
A
HOH
157
2
HOH
HOH
257
A
HOH
158
2
HOH
HOH
258
A
HOH
159
2
HOH
HOH
259
A
HOH
160
2
HOH
HOH
260
A
HOH
161
2
HOH
HOH
261
A
HOH
162
2
HOH
HOH
262
A
HOH
163
2
HOH
HOH
263
A
HOH
164
2
HOH
HOH
264
A
HOH
165
2
HOH
HOH
265
A
HOH
166
2
HOH
HOH
266
A
HOH
167
2
HOH
HOH
267
A
HOH
168
2
HOH
HOH
268
A
HOH
169
2
HOH
HOH
269
A
HOH
170
2
HOH
HOH
270
A
HOH
171
2
HOH
HOH
271
A
HOH
172
2
HOH
HOH
272
A
HOH
173
2
HOH
HOH
273
A
HOH
174
2
HOH
HOH
274
A
HOH
175
2
HOH
HOH
275
A
HOH
176
2
HOH
HOH
276
A
HOH
177
2
HOH
HOH
277
A
HOH
178
2
HOH
HOH
278
A
HOH
179
2
HOH
HOH
279
A
HOH
180
2
HOH
HOH
280
A
HOH
181
2
HOH
HOH
281
A
n
1
-6
A
n
2
-5
A
n
3
-4
A
n
4
-3
A
n
5
-2
A
n
6
-1
A
n
7
0
A
n
8
1
A
n
9
2
A
SER
3
n
10
SER
3
A
PHE
4
n
11
PHE
4
A
HIS
5
n
12
HIS
5
A
VAL
6
n
13
VAL
6
A
ILE
7
n
14
ILE
7
A
LEU
8
n
15
LEU
8
A
ASN
9
n
16
ASN
9
A
LYS
10
n
17
LYS
10
A
SER
11
n
18
SER
11
A
SER
12
n
19
SER
12
A
PRO
13
n
20
PRO
13
A
GLU
14
n
21
GLU
14
A
GLU
15
n
22
GLU
15
A
GLN
16
n
23
GLN
16
A
LEU
17
n
24
LEU
17
A
GLY
18
n
25
GLY
18
A
ILE
19
n
26
ILE
19
A
LYS
20
n
27
LYS
20
A
LEU
21
n
28
LEU
21
A
VAL
22
n
29
VAL
22
A
ARG
23
n
30
ARG
23
A
ARG
24
n
31
ARG
24
A
VAL
25
n
32
VAL
25
A
ASP
26
n
33
ASP
26
A
GLU
27
n
34
GLU
27
A
PRO
28
n
35
PRO
28
A
GLY
29
n
36
GLY
29
A
VAL
30
n
37
VAL
30
A
PHE
31
n
38
PHE
31
A
ILE
32
n
39
ILE
32
A
PHE
33
n
40
PHE
33
A
ASN
34
n
41
ASN
34
A
VAL
35
n
42
VAL
35
A
LEU
36
n
43
LEU
36
A
ASN
37
n
44
ASN
37
A
GLY
38
n
45
GLY
38
A
GLY
39
n
46
GLY
39
A
VAL
40
n
47
VAL
40
A
ALA
41
n
48
ALA
41
A
ASP
42
n
49
ASP
42
A
ARG
43
n
50
ARG
43
A
HIS
44
n
51
HIS
44
A
GLY
45
n
52
GLY
45
A
GLN
46
n
53
GLN
46
A
LEU
47
n
54
LEU
47
A
GLU
48
n
55
GLU
48
A
GLU
49
n
56
GLU
49
A
ASN
50
n
57
ASN
50
A
ASP
51
n
58
ASP
51
A
ARG
52
n
59
ARG
52
A
VAL
53
n
60
VAL
53
A
LEU
54
n
61
LEU
54
A
ALA
55
n
62
ALA
55
A
ILE
56
n
63
ILE
56
A
ASN
57
n
64
ASN
57
A
GLY
58
n
65
GLY
58
A
HIS
59
n
66
HIS
59
A
ASP
60
n
67
ASP
60
A
LEU
61
n
68
LEU
61
A
ARG
62
n
69
ARG
62
A
PHE
63
n
70
PHE
63
A
GLY
64
n
71
GLY
64
A
SER
65
n
72
SER
65
A
PRO
66
n
73
PRO
66
A
GLU
67
n
74
GLU
67
A
SER
68
n
75
SER
68
A
ALA
69
n
76
ALA
69
A
ALA
70
n
77
ALA
70
A
HIS
71
n
78
HIS
71
A
LEU
72
n
79
LEU
72
A
ILE
73
n
80
ILE
73
A
GLN
74
n
81
GLN
74
A
ALA
75
n
82
ALA
75
A
SER
76
n
83
SER
76
A
GLU
77
n
84
GLU
77
A
ARG
78
n
85
ARG
78
A
ARG
79
n
86
ARG
79
A
VAL
80
n
87
VAL
80
A
HIS
81
n
88
HIS
81
A
LEU
82
n
89
LEU
82
A
VAL
83
n
90
VAL
83
A
VAL
84
n
91
VAL
84
A
SER
85
n
92
SER
85
A
ARG
86
n
93
ARG
86
A
GLN
87
n
94
GLN
87
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
6
A
N
VAL
13
A
O
LEU
82
A
O
LEU
89
A
O
SER
85
A
O
SER
92
A
N
ARG
52
A
N
ARG
59
A
O
VAL
53
A
O
VAL
60
A
N
VAL
30
A
N
VAL
37
A
O
PHE
33
A
O
PHE
40
A
N
LYS
20
A
N
LYS
27
A
N
VAL
6
A
N
VAL
13
A
O
LEU
82
A
O
LEU
89
A
O
SER
85
A
O
SER
92
A
N
ARG
52
A
N
ARG
59
A
N
ILE
56
A
N
ILE
63
A
O
HIS
59
A
O
HIS
66
1
A
HOH
136
B
HOH
1
A
HOH
275
B
HOH
1
A
HOH
277
B
HOH
1
A
GLY
-6
A
GLY
1
1
Y
1
A
PRO
-5
A
PRO
2
1
Y
1
A
LEU
-4
A
LEU
3
1
Y
1
A
GLY
-3
A
GLY
4
1
Y
1
A
SER
-2
A
SER
5
1
Y
1
A
ASP
-1
A
ASP
6
1
Y
1
A
HIS
0
A
HIS
7
1
Y
1
A
ASP
1
A
ASP
8
1
Y
1
A
ASP
2
A
ASP
9
1
Y
1
A
ASN
50
81.33
-4.49
1
A
ARG
78
-146.12
-59.10
1
A
ARG
78
-147.17
-56.96
47.680
15.6690
6.460
-0.0773
-0.0000
0.4067
-0.5969
-0.0000
0.6742
0.1639
0.1447
0.1457
1.199
26.195
1396
27352
27350
5.10
99.00
1.000
0.200
0.9279
0.11
RANDOM
1
0.0
MOLECULAR REPLACEMENT
13.7400
0.86
1.10
2vwr
ML
FLAT BULK SOLVENT MODEL
39.603
0.379
1.199
26.195
181
851
0
0
670
0.006
734
1.087
1005
0.075
112
0.005
138
12.444
293
0.1631
0.1599
1.2414
131
2525
2656
10
97.0000
0.2034
0.1498
1.2911
143
2541
2684
10
98.0000
0.1768
0.1380
1.3499
123
2589
2712
10
99.0000
0.1499
0.1251
1.4210
129
2613
2742
10
99.0000
0.1520
0.1186
1.5100
144
2583
2727
10
99.0000
0.1530
0.1177
1.6266
149
2601
2750
10
100.0000
0.1838
0.1346
1.7903
138
2610
2748
10
100.0000
0.1768
0.1471
2.0492
137
2634
2771
10
100.0000
0.1685
0.1494
2.5815
147
2621
2768
10
100.0000
0.1525
0.1548
26.2010
155
2637
2792
10
99.0000
10.910
1.199
30.0
3VQF
27352
27350
-3
0.062
1
13.1
99.1
0.184
1.20
1.22
5.1
1332
1
7.2
98.4
0.200
1.22
1.24
4.9
1371
1
7.3
97.6
0.208
1.24
1.27
4.9
1329
1
7.3
98.7
0.242
1.27
1.29
4.7
1338
1
8.0
97.8
0.249
1.29
1.32
3.4
1380
1
14.0
99.0
0.289
1.32
1.35
3.3
1333
1
14.7
98.3
0.318
1.35
1.39
3.2
1368
1
14.6
98.8
0.373
1.39
1.42
3.2
1365
1
14.8
99.1
0.443
1.42
1.46
3.2
1369
1
14.7
99.1
0.546
1.46
1.51
3.2
1363
1
14.8
99.3
0.660
1.51
1.57
3.3
1365
1
14.8
99.6
data collection
HKL-2000
phasing
MOLREP
refinement
PHENIX
(phenix.refine: 1.7.3_928)
data reduction
HKL-2000
data scaling
SCALEPACK
Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein
1
N
N
2
N
N
A
GLY
39
A
GLY
46
HELX_P
A
GLY
45
A
GLY
52
1
1
7
A
SER
65
A
SER
72
HELX_P
A
SER
76
A
SER
83
1
2
12
PEPTIDE BINDING PROTEIN
PDZ domain, claudin C-terminus, PEPTIDE BINDING PROTEIN
LNX1_MOUSE
UNP
1
381
O70263
DDSFHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPESAAHLIQASERRV
HLVVSRQ
381
467
3VQF
1
87
O70263
A
1
8
94
1
expression tag
GLY
-6
3VQF
A
O70263
UNP
1
1
expression tag
PRO
-5
3VQF
A
O70263
UNP
2
1
expression tag
LEU
-4
3VQF
A
O70263
UNP
3
1
expression tag
GLY
-3
3VQF
A
O70263
UNP
4
1
expression tag
SER
-2
3VQF
A
O70263
UNP
5
1
expression tag
ASP
-1
3VQF
A
O70263
UNP
6
1
expression tag
HIS
0
3VQF
A
O70263
UNP
7
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
4
A
PHE
11
A
ASN
9
A
ASN
16
A
ARG
79
A
ARG
86
A
SER
85
A
SER
92
A
ARG
52
A
ARG
59
A
ILE
56
A
ILE
63
A
VAL
30
A
VAL
37
A
VAL
35
A
VAL
42
A
ILE
19
A
ILE
26
A
VAL
22
A
VAL
29
A
PHE
4
A
PHE
11
A
ASN
9
A
ASN
16
A
ARG
79
A
ARG
86
A
SER
85
A
SER
92
A
ARG
52
A
ARG
59
A
ILE
56
A
ILE
63
A
HIS
59
A
HIS
66
A
ASP
60
A
ASP
67
5
C 1 2 1