0.016433 0.000000 0.009519 0.000000 0.019697 0.000000 0.000000 0.000000 0.034876 0.00000 0.00000 0.00000 Akiyoshi, Y. Hamada, D. Goda, N. Tenno, T. Narita, H. Nakagawa, A. Furuse, M. Suzuki, M. Hiroaki, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 120.08 90.00 60.852 50.768 33.136 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C Y 221 N C Y 222 N C Y 223 N C Y 224 N C Y 225 N C Y 226 N C N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N N N 240 S C N 241 N C N 242 N O N 243 N C N 244 N C N 245 N C N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N O N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N S N 271 N O N 272 N O N 273 N O N 274 N O N 275 N N N 276 S C N 277 N C N 278 N O N 279 R C N 280 N O N 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N N N 293 S C N 294 N C N 295 N O N 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C N 303 N O N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N N N 317 S C N 318 N C N 319 N O N 320 N C N 321 N C N 322 N C N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing Y 216 N doub Y 217 N sing Y 218 N sing N 219 N sing Y 220 N doub N 221 N sing Y 222 N doub N 223 N sing Y 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N doub Y 290 N sing Y 291 N sing N 292 N sing Y 293 N doub N 294 N sing Y 295 N doub N 296 N sing Y 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing To be Published 0353 Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase 10.2210/pdb3vqg/pdb pdb_00003vqg 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-03-13 ADSC QUANTUM 270 Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 1.0 1.0 BL-1A Photon Factory 1.0 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-1A 10386.552 E3 ubiquitin-protein ligase LNX second PDZ domain 1 man polymer 1093.319 C-terminal peptide from Immunoglobulin superfamily member 5 1 syn polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 117 nat water JAM-4 no no GPLGSDHDDSFHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPESAAHLI QASERRVHLVVSRQ GPLGSDHDDSFHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPESAAHLI QASERRVHLVVSRQ A polypeptide(L) no no YKVRNVTLV YKVRNVTLV B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample Lnx1 10090 Mus musculus 562 Escherichia coli BL21(DE3) PLASMID pGEX-6P3-PRESAT 1 1.93 36.24 VAPOR DIFFUSION, SITTING DROP 6.5 30% polyethlene glycol monomethyl ether 5000, 0.2M ammonium sulfate, 0.1M MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2013-03-27 1 1 2023-11-08 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Apo form of the same protein. PDBJ Y PDBJ 2012-03-23 REL REL SO4 SULFATE ION HOH water This sequence occurs naturally in Mus musculus 10090 mouse Mus musculus sample 2VWR PDB experimental model SO4 1 3 SO4 SO4 101 A HOH 1 4 HOH HOH 201 A HOH 2 4 HOH HOH 202 A HOH 3 4 HOH HOH 203 A HOH 4 4 HOH HOH 204 A HOH 5 4 HOH HOH 205 A HOH 6 4 HOH HOH 206 A HOH 7 4 HOH HOH 207 A HOH 8 4 HOH HOH 208 A HOH 9 4 HOH HOH 209 A HOH 10 4 HOH HOH 210 A HOH 11 4 HOH HOH 211 A HOH 12 4 HOH HOH 212 A HOH 13 4 HOH HOH 213 A HOH 14 4 HOH HOH 214 A HOH 16 4 HOH HOH 215 A HOH 17 4 HOH HOH 216 A HOH 18 4 HOH HOH 217 A HOH 20 4 HOH HOH 218 A HOH 21 4 HOH HOH 219 A HOH 22 4 HOH HOH 220 A HOH 23 4 HOH HOH 221 A HOH 24 4 HOH HOH 222 A HOH 25 4 HOH HOH 223 A HOH 26 4 HOH HOH 224 A HOH 28 4 HOH HOH 225 A HOH 29 4 HOH HOH 226 A HOH 30 4 HOH HOH 227 A HOH 31 4 HOH HOH 228 A HOH 32 4 HOH HOH 229 A HOH 33 4 HOH HOH 230 A HOH 34 4 HOH HOH 231 A HOH 35 4 HOH HOH 232 A HOH 36 4 HOH HOH 233 A HOH 37 4 HOH HOH 234 A HOH 38 4 HOH HOH 235 A HOH 39 4 HOH HOH 236 A HOH 40 4 HOH HOH 237 A HOH 41 4 HOH HOH 238 A HOH 43 4 HOH HOH 239 A HOH 44 4 HOH HOH 240 A HOH 46 4 HOH HOH 241 A HOH 47 4 HOH HOH 242 A HOH 48 4 HOH HOH 243 A HOH 49 4 HOH HOH 244 A HOH 50 4 HOH HOH 245 A HOH 51 4 HOH HOH 246 A HOH 52 4 HOH HOH 247 A HOH 53 4 HOH HOH 248 A HOH 54 4 HOH HOH 249 A HOH 55 4 HOH HOH 250 A HOH 56 4 HOH HOH 251 A HOH 57 4 HOH HOH 252 A HOH 58 4 HOH HOH 253 A HOH 59 4 HOH HOH 254 A HOH 61 4 HOH HOH 255 A HOH 62 4 HOH HOH 256 A HOH 63 4 HOH HOH 257 A HOH 64 4 HOH HOH 258 A HOH 65 4 HOH HOH 259 A HOH 66 4 HOH HOH 260 A HOH 67 4 HOH HOH 261 A HOH 68 4 HOH HOH 262 A HOH 69 4 HOH HOH 263 A HOH 70 4 HOH HOH 264 A HOH 71 4 HOH HOH 265 A HOH 72 4 HOH HOH 266 A HOH 73 4 HOH HOH 267 A HOH 74 4 HOH HOH 268 A HOH 75 4 HOH HOH 269 A HOH 76 4 HOH HOH 270 A HOH 77 4 HOH HOH 271 A HOH 78 4 HOH HOH 272 A HOH 79 4 HOH HOH 273 A HOH 80 4 HOH HOH 274 A HOH 81 4 HOH HOH 275 A HOH 82 4 HOH HOH 276 A HOH 83 4 HOH HOH 277 A HOH 84 4 HOH HOH 278 A HOH 85 4 HOH HOH 279 A HOH 86 4 HOH HOH 280 A HOH 87 4 HOH HOH 281 A HOH 88 4 HOH HOH 282 A HOH 89 4 HOH HOH 283 A HOH 90 4 HOH HOH 284 A HOH 91 4 HOH HOH 285 A HOH 92 4 HOH HOH 286 A HOH 93 4 HOH HOH 287 A HOH 94 4 HOH HOH 288 A HOH 95 4 HOH HOH 289 A HOH 96 4 HOH HOH 290 A HOH 97 4 HOH HOH 291 A HOH 98 4 HOH HOH 292 A HOH 99 4 HOH HOH 293 A HOH 100 4 HOH HOH 294 A HOH 101 4 HOH HOH 295 A HOH 102 4 HOH HOH 296 A HOH 103 4 HOH HOH 297 A HOH 104 4 HOH HOH 298 A HOH 105 4 HOH HOH 299 A HOH 106 4 HOH HOH 300 A HOH 107 4 HOH HOH 301 A HOH 108 4 HOH HOH 302 A HOH 109 4 HOH HOH 303 A HOH 110 4 HOH HOH 304 A HOH 111 4 HOH HOH 305 A HOH 112 4 HOH HOH 306 A HOH 113 4 HOH HOH 307 A HOH 114 4 HOH HOH 308 A HOH 115 4 HOH HOH 309 A HOH 116 4 HOH HOH 310 A HOH 117 4 HOH HOH 311 A HOH 15 4 HOH HOH 201 B HOH 19 4 HOH HOH 202 B HOH 27 4 HOH HOH 203 B HOH 42 4 HOH HOH 204 B HOH 45 4 HOH HOH 205 B HOH 60 4 HOH HOH 206 B n 1 -6 A n 2 -5 A n 3 -4 A n 4 -3 A n 5 -2 A n 6 -1 A n 7 0 A n 8 1 A n 9 2 A SER 3 n 10 SER 3 A PHE 4 n 11 PHE 4 A HIS 5 n 12 HIS 5 A VAL 6 n 13 VAL 6 A ILE 7 n 14 ILE 7 A LEU 8 n 15 LEU 8 A ASN 9 n 16 ASN 9 A LYS 10 n 17 LYS 10 A SER 11 n 18 SER 11 A SER 12 n 19 SER 12 A PRO 13 n 20 PRO 13 A GLU 14 n 21 GLU 14 A GLU 15 n 22 GLU 15 A GLN 16 n 23 GLN 16 A LEU 17 n 24 LEU 17 A GLY 18 n 25 GLY 18 A ILE 19 n 26 ILE 19 A LYS 20 n 27 LYS 20 A LEU 21 n 28 LEU 21 A VAL 22 n 29 VAL 22 A ARG 23 n 30 ARG 23 A ARG 24 n 31 ARG 24 A VAL 25 n 32 VAL 25 A ASP 26 n 33 ASP 26 A GLU 27 n 34 GLU 27 A PRO 28 n 35 PRO 28 A GLY 29 n 36 GLY 29 A VAL 30 n 37 VAL 30 A PHE 31 n 38 PHE 31 A ILE 32 n 39 ILE 32 A PHE 33 n 40 PHE 33 A ASN 34 n 41 ASN 34 A VAL 35 n 42 VAL 35 A LEU 36 n 43 LEU 36 A ASN 37 n 44 ASN 37 A GLY 38 n 45 GLY 38 A GLY 39 n 46 GLY 39 A VAL 40 n 47 VAL 40 A ALA 41 n 48 ALA 41 A ASP 42 n 49 ASP 42 A ARG 43 n 50 ARG 43 A HIS 44 n 51 HIS 44 A GLY 45 n 52 GLY 45 A GLN 46 n 53 GLN 46 A LEU 47 n 54 LEU 47 A GLU 48 n 55 GLU 48 A GLU 49 n 56 GLU 49 A ASN 50 n 57 ASN 50 A ASP 51 n 58 ASP 51 A ARG 52 n 59 ARG 52 A VAL 53 n 60 VAL 53 A LEU 54 n 61 LEU 54 A ALA 55 n 62 ALA 55 A ILE 56 n 63 ILE 56 A ASN 57 n 64 ASN 57 A GLY 58 n 65 GLY 58 A HIS 59 n 66 HIS 59 A ASP 60 n 67 ASP 60 A LEU 61 n 68 LEU 61 A ARG 62 n 69 ARG 62 A PHE 63 n 70 PHE 63 A GLY 64 n 71 GLY 64 A SER 65 n 72 SER 65 A PRO 66 n 73 PRO 66 A GLU 67 n 74 GLU 67 A SER 68 n 75 SER 68 A ALA 69 n 76 ALA 69 A ALA 70 n 77 ALA 70 A HIS 71 n 78 HIS 71 A LEU 72 n 79 LEU 72 A ILE 73 n 80 ILE 73 A GLN 74 n 81 GLN 74 A ALA 75 n 82 ALA 75 A SER 76 n 83 SER 76 A GLU 77 n 84 GLU 77 A ARG 78 n 85 ARG 78 A ARG 79 n 86 ARG 79 A VAL 80 n 87 VAL 80 A HIS 81 n 88 HIS 81 A LEU 82 n 89 LEU 82 A VAL 83 n 90 VAL 83 A VAL 84 n 91 VAL 84 A SER 85 n 92 SER 85 A ARG 86 n 93 ARG 86 A GLN 87 n 94 GLN 87 A n 1 97 B n 2 98 B n 3 99 B n 4 100 B n 5 101 B VAL 102 n 6 VAL 102 B THR 103 n 7 THR 103 B LEU 104 n 8 LEU 104 B VAL 105 n 9 VAL 105 B author_and_software_defined_assembly PISA 2 dimeric 910 -17 5060 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 6 A N VAL 13 A O LEU 82 A O LEU 89 A O SER 85 A O SER 92 A N ARG 52 A N ARG 59 A N ILE 56 A N ILE 63 A O HIS 59 A O HIS 66 A N VAL 6 A N VAL 13 A O LEU 82 A O LEU 89 A O SER 85 A O SER 92 A N ARG 52 A N ARG 59 A O VAL 53 A O VAL 60 A N VAL 30 A N VAL 37 A O PHE 33 A O PHE 40 A N LYS 20 A N LYS 27 A N LEU 21 A N LEU 28 B O THR 103 B O THR 7 1 A HOH 201 D HOH 1 A HOH 227 D HOH 1 A HOH 238 D HOH 1 A GLY -6 A GLY 1 1 Y 1 A PRO -5 A PRO 2 1 Y 1 A LEU -4 A LEU 3 1 Y 1 A GLY -3 A GLY 4 1 Y 1 A SER -2 A SER 5 1 Y 1 A ASP -1 A ASP 6 1 Y 1 A HIS 0 A HIS 7 1 Y 1 A ASP 1 A ASP 8 1 Y 1 A ASP 2 A ASP 9 1 Y 1 B TYR 97 B TYR 1 1 Y 1 B LYS 98 B LYS 2 1 Y 1 B VAL 99 B VAL 3 1 Y 1 B ARG 100 B ARG 4 1 Y 1 B ASN 101 B ASN 5 1 Y 1 A A NH2 OD1 ARG ASN 24 50 2.16 1 A ASN 50 80.40 -5.71 1 A ARG 78 -145.12 -57.15 42.270 9.5138 1.080 9.3562 -0.0000 5.2577 6.1693 -0.0000 10.3533 0.2067 0.1699 0.1718 1.350 26.328 974 18907 18904 5.15 98.32 1.000 0.300 0.8871 0.19 RANDOM 1 1.39 MOLECULAR REPLACEMENT 18.5900 0.60 0.90 2vwr ML FLAT BULK SOLVENT MODEL 35.734 0.385 1.350 26.328 117 822 5 0 700 0.005 748 1.032 1023 0.066 119 0.005 137 11.993 288 0.2600 0.2363 1.4213 138 2506 2644 7 97.0000 0.2558 0.2026 1.5104 137 2598 2735 7 100.0000 0.2054 0.1633 1.6270 129 2606 2735 7 100.0000 0.1972 0.1507 1.7906 135 2608 2743 7 100.0000 0.1759 0.1459 2.0497 133 2592 2725 7 100.0000 0.1943 0.1503 2.5820 166 2573 2739 7 100.0000 0.2166 0.1852 26.3329 136 2447 2583 7 92.0000 14.670 1.35 30.0 3VQG 18907 18907 -3 0.091 1 3.5 98.7 0.991 1.35 1.37 43.8 952 1 3.5 99.7 1.147 1.37 1.40 43.5 950 1 3.6 99.8 1.351 1.40 1.43 43.7 934 1 3.6 99.8 1.534 1.43 1.45 44.0 969 1 3.5 99.8 1.923 1.45 1.49 43.9 930 1 3.6 99.9 2.077 1.49 1.52 43.9 982 1 3.6 100.0 2.684 1.52 1.56 45.5 945 1 3.6 100.0 3.102 1.56 1.60 46.8 944 1 3.5 99.8 3.968 1.60 1.65 49.1 971 1 3.6 100.0 4.684 1.65 1.70 51.6 938 1 3.6 100.0 5.827 1.70 1.76 55.4 950 1 3.6 100.0 8.459 1.76 1.83 66.9 960 1 3.6 99.8 11.525 1.83 1.92 81.3 946 1 3.6 99.8 17.80 1.92 2.02 109.3 967 1 3.6 99.8 25.469 2.02 2.14 144.4 952 1 3.6 99.5 35.141 2.14 2.31 192.2 955 1 3.5 99.8 38.680 2.31 2.54 203.5 971 1 3.5 99.9 63.083 2.54 2.91 321.9 946 1 3.5 99.3 126.946 2.91 3.66 664.7 924 1 3.3 94.9 129.460 3.66 30.00 732.8 821 1 3.0 82.9 data collection HKL-2000 phasing MOLREP refinement PHENIX (phenix.refine: 1.7.3_928) data reduction HKL-2000 data scaling SCALEPACK Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein 1 N N 2 N N 3 N N 4 N N 4 N N A GLY 39 A GLY 46 HELX_P A GLY 45 A GLY 52 1 1 7 A SER 65 A SER 72 HELX_P A SER 76 A SER 83 1 2 12 PEPTIDE BINDING PROTEIN PDZ domain, peptide binding, JAM4 (junctional adhesion molecule-4) C-terminal peptide, Cytoplasm(LNX1), Membrane(JAM4), PEPTIDE BINDING PROTEIN LNX1_MOUSE UNP 1 381 O70263 DDSFHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPESAAHLIQASERRV HLVVSRQ IGSF5_MOUSE UNP 2 363 Q7TSN7 KVRNVTLV 381 467 3VQG 1 87 O70263 A 1 8 94 363 370 3VQG 98 105 Q7TSN7 B 2 2 9 1 expression tag GLY -6 3VQG A O70263 UNP 1 1 expression tag PRO -5 3VQG A O70263 UNP 2 1 expression tag LEU -4 3VQG A O70263 UNP 3 1 expression tag GLY -3 3VQG A O70263 UNP 4 1 expression tag SER -2 3VQG A O70263 UNP 5 1 expression tag ASP -1 3VQG A O70263 UNP 6 1 expression tag HIS 0 3VQG A O70263 UNP 7 2 expression tag TYR 97 3VQG B Q7TSN7 UNP 1 4 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PHE 4 A PHE 11 A ASN 9 A ASN 16 A ARG 79 A ARG 86 A SER 85 A SER 92 A ARG 52 A ARG 59 A ILE 56 A ILE 63 A HIS 59 A HIS 66 A ASP 60 A ASP 67 A PHE 4 A PHE 11 A ASN 9 A ASN 16 A ARG 79 A ARG 86 A SER 85 A SER 92 A ARG 52 A ARG 59 A ILE 56 A ILE 63 A VAL 30 A VAL 37 A VAL 35 A VAL 42 A ILE 19 A ILE 26 A VAL 22 A VAL 29 B THR 103 B THR 7 B VAL 105 B VAL 9 BINDING SITE FOR RESIDUE SO4 A 101 A SO4 101 Software 6 A ILE 7 A ILE 14 6 1_555 A ARG 24 A ARG 31 6 4_445 A ARG 79 A ARG 86 6 1_555 A HOH 250 D HOH 6 4_445 A HOH 295 D HOH 6 1_555 A HOH 296 D HOH 6 1_555 5 C 1 2 1