0.015924
0.007033
0.002867
0.000000
0.015747
0.005489
0.000000
0.000000
0.012713
0.00000
0.00000
0.00000
Yanagisawa, T.
Sumida, T.
Ishii, R.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
106.92
91.41
113.83
62.798
69.422
83.326
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H14 N5 O7 P
347.221
ADENOSINE MONOPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C21 H34 N7 O10 P
575.509
[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2S)-2-azanyl-6-[(2-methylpropan-2-yl)oxycarbonylamino]hexanoate
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
O
N
19
N
C
N
20
R
C
N
21
N
O
N
22
S
C
N
23
N
O
N
24
R
C
N
25
N
O
N
26
R
C
Y
27
N
N
Y
28
N
C
Y
29
N
N
Y
30
N
C
Y
31
N
C
N
32
N
N
Y
33
N
N
Y
34
N
C
Y
35
N
N
Y
36
N
C
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
C
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
O
N
118
N
N
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
C
N
123
S
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
P
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
C
N
133
R
C
N
134
N
O
N
135
S
C
N
136
N
O
N
137
R
C
N
138
N
O
N
139
R
C
Y
140
N
N
Y
141
N
C
Y
142
N
N
Y
143
N
C
Y
144
N
C
Y
145
N
N
Y
146
N
C
Y
147
N
N
Y
148
N
C
N
149
N
N
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
R
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
S
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
N
Y
254
N
C
Y
255
N
C
Y
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
S
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
N
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
S
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
P
N
384
N
O
N
385
N
O
N
386
N
O
N
387
N
O
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
N
410
N
O
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
R
C
N
424
N
O
N
425
N
C
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
N
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
N
474
N
O
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
N
N
488
S
C
N
489
N
C
N
490
N
O
N
491
N
C
N
492
N
C
N
493
N
C
N
494
N
O
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
Y
41
N
sing
Y
42
N
sing
Y
43
N
doub
N
44
N
sing
Y
45
N
doub
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
doub
N
50
N
sing
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
doub
Y
111
N
sing
Y
112
N
sing
Y
113
N
doub
Y
114
N
sing
Y
115
N
doub
Y
116
N
doub
Y
117
N
sing
Y
118
N
sing
Y
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
sing
Y
255
N
doub
Y
256
N
doub
N
257
N
sing
Y
258
N
sing
N
259
N
sing
Y
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
Y
435
N
doub
Y
436
N
sing
Y
437
N
sing
N
438
N
sing
Y
439
N
doub
Y
440
N
sing
Y
441
N
sing
N
442
N
sing
Y
443
N
sing
Y
444
N
doub
N
445
N
sing
Y
446
N
doub
N
447
N
sing
Y
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
doub
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
Y
463
N
doub
Y
464
N
sing
Y
465
N
sing
N
466
N
sing
Y
467
N
doub
N
468
N
sing
Y
469
N
doub
N
470
N
sing
Y
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
doub
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
69
5
15
10.1107/S0907444912039881
23275158
A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site
2013
10.2210/pdb3vqx/pdb
pdb_00003vqx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2005-06-29
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
BL41XU
SPring-8
1.0000
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
33344.164
Pyrrolysine--tRNA ligase
6.1.1.26
E444G
4
man
polymer
347.221
ADENOSINE MONOPHOSPHATE
2
syn
non-polymer
94.971
PHOSPHATE ION
4
syn
non-polymer
575.509
[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2S)-2-azanyl-6-[(2-methylpropan-2-yl)oxycarbonylamino]hexanoate
2
syn
non-polymer
18.015
water
164
nat
water
Pyrrolysyl-tRNA synthetase, PylRS
no
no
MGSSHHHHHHSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYL
GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIF
EIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAVVG
PIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSGSYYNGISTNL
MGSSHHHHHHSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYL
GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIF
EIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAVVG
PIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSGSYYNGISTNL
A,B,C,D
RSGI-trt001000322.7
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
JCM9314
sample
pylS
2209
Methanosarcina mazei
562
Escherichia coli
BL21(DE3) codon plus
plasmid
pET28c
1
2.35
47.70
VAPOR DIFFUSION, HANGING DROP
6.8
Sodium Cacodylate, Sodium/Potassium tartrate, Ammonium Sulfate, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-01-02
1
1
2013-09-04
1
2
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
PDBJ
Y
PDBJ
2012-04-02
REL
REL
AMP
ADENOSINE MONOPHOSPHATE
PO4
PHOSPHATE ION
BLK
[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2S)-2-azanyl-6-[(2-methylpropan-2-yl)oxycarbonylamino]hexanoate
HOH
water
A SEQUENCE DATABASE REFERENCE FOR THIS STRAIN OF SOURCE (METHANOSARCINA MAZEI JCM9314)
DOES NOT CURRENTLY EXIST.
THIS SEQUENCE CONTAINS 21 A.A. N-TERMINAL TAGS
AND C-TERMINAL DOMAIN(RESIDUES 185-454) OF PYLRS. AND THIS PROTEIN IS E444G MUTANT.
3VQW
PDB
experimental model
AMP
501
2
AMP
AMP
501
A
PO4
5954
3
PO4
PO4
502
A
AMP
502
2
AMP
AMP
501
B
PO4
5953
3
PO4
PO4
502
B
BLK
601
4
BLK
BLK
601
C
PO4
603
3
PO4
PO4
602
C
BLK
501
4
BLK
BLK
501
D
PO4
503
3
PO4
PO4
502
D
HOH
601
5
HOH
HOH
601
A
HOH
602
5
HOH
HOH
602
A
HOH
603
5
HOH
HOH
603
A
HOH
604
5
HOH
HOH
604
A
HOH
605
5
HOH
HOH
605
A
HOH
606
5
HOH
HOH
606
A
HOH
607
5
HOH
HOH
607
A
HOH
608
5
HOH
HOH
608
A
HOH
609
5
HOH
HOH
609
A
HOH
610
5
HOH
HOH
610
A
HOH
611
5
HOH
HOH
611
A
HOH
612
5
HOH
HOH
612
A
HOH
613
5
HOH
HOH
613
A
HOH
614
5
HOH
HOH
614
A
HOH
615
5
HOH
HOH
615
A
HOH
616
5
HOH
HOH
616
A
HOH
617
5
HOH
HOH
617
A
HOH
618
5
HOH
HOH
618
A
HOH
619
5
HOH
HOH
619
A
HOH
620
5
HOH
HOH
620
A
HOH
621
5
HOH
HOH
621
A
HOH
622
5
HOH
HOH
622
A
HOH
623
5
HOH
HOH
623
A
HOH
624
5
HOH
HOH
624
A
HOH
625
5
HOH
HOH
625
A
HOH
626
5
HOH
HOH
626
A
HOH
627
5
HOH
HOH
627
A
HOH
628
5
HOH
HOH
628
A
HOH
629
5
HOH
HOH
629
A
HOH
630
5
HOH
HOH
630
A
HOH
631
5
HOH
HOH
631
A
HOH
632
5
HOH
HOH
632
A
HOH
633
5
HOH
HOH
633
A
HOH
634
5
HOH
HOH
634
A
HOH
635
5
HOH
HOH
635
A
HOH
636
5
HOH
HOH
636
A
HOH
637
5
HOH
HOH
637
A
HOH
638
5
HOH
HOH
638
A
HOH
639
5
HOH
HOH
639
A
HOH
640
5
HOH
HOH
640
A
HOH
641
5
HOH
HOH
641
A
HOH
642
5
HOH
HOH
642
A
HOH
643
5
HOH
HOH
643
A
HOH
644
5
HOH
HOH
644
A
HOH
645
5
HOH
HOH
645
A
HOH
646
5
HOH
HOH
646
A
HOH
601
5
HOH
HOH
601
B
HOH
602
5
HOH
HOH
602
B
HOH
603
5
HOH
HOH
603
B
HOH
604
5
HOH
HOH
604
B
HOH
605
5
HOH
HOH
605
B
HOH
606
5
HOH
HOH
606
B
HOH
607
5
HOH
HOH
607
B
HOH
608
5
HOH
HOH
608
B
HOH
609
5
HOH
HOH
609
B
HOH
610
5
HOH
HOH
610
B
HOH
611
5
HOH
HOH
611
B
HOH
612
5
HOH
HOH
612
B
HOH
613
5
HOH
HOH
613
B
HOH
614
5
HOH
HOH
614
B
HOH
615
5
HOH
HOH
615
B
HOH
616
5
HOH
HOH
616
B
HOH
617
5
HOH
HOH
617
B
HOH
618
5
HOH
HOH
618
B
HOH
619
5
HOH
HOH
619
B
HOH
620
5
HOH
HOH
620
B
HOH
621
5
HOH
HOH
621
B
HOH
622
5
HOH
HOH
622
B
HOH
623
5
HOH
HOH
623
B
HOH
624
5
HOH
HOH
624
B
HOH
625
5
HOH
HOH
625
B
HOH
626
5
HOH
HOH
626
B
HOH
627
5
HOH
HOH
627
B
HOH
628
5
HOH
HOH
628
B
HOH
629
5
HOH
HOH
629
B
HOH
630
5
HOH
HOH
630
B
HOH
631
5
HOH
HOH
631
B
HOH
632
5
HOH
HOH
632
B
HOH
633
5
HOH
HOH
633
B
HOH
634
5
HOH
HOH
634
B
HOH
635
5
HOH
HOH
635
B
HOH
636
5
HOH
HOH
636
B
HOH
637
5
HOH
HOH
637
B
HOH
638
5
HOH
HOH
638
B
HOH
639
5
HOH
HOH
639
B
HOH
640
5
HOH
HOH
640
B
HOH
641
5
HOH
HOH
641
B
HOH
642
5
HOH
HOH
642
B
HOH
643
5
HOH
HOH
643
B
HOH
644
5
HOH
HOH
644
B
HOH
645
5
HOH
HOH
645
B
HOH
646
5
HOH
HOH
646
B
HOH
647
5
HOH
HOH
647
B
HOH
648
5
HOH
HOH
648
B
HOH
649
5
HOH
HOH
649
B
HOH
701
5
HOH
HOH
701
C
HOH
702
5
HOH
HOH
702
C
HOH
703
5
HOH
HOH
703
C
HOH
704
5
HOH
HOH
704
C
HOH
705
5
HOH
HOH
705
C
HOH
706
5
HOH
HOH
706
C
HOH
707
5
HOH
HOH
707
C
HOH
708
5
HOH
HOH
708
C
HOH
709
5
HOH
HOH
709
C
HOH
710
5
HOH
HOH
710
C
HOH
711
5
HOH
HOH
711
C
HOH
712
5
HOH
HOH
712
C
HOH
713
5
HOH
HOH
713
C
HOH
714
5
HOH
HOH
714
C
HOH
715
5
HOH
HOH
715
C
HOH
716
5
HOH
HOH
716
C
HOH
717
5
HOH
HOH
717
C
HOH
718
5
HOH
HOH
718
C
HOH
719
5
HOH
HOH
719
C
HOH
720
5
HOH
HOH
720
C
HOH
721
5
HOH
HOH
721
C
HOH
722
5
HOH
HOH
722
C
HOH
723
5
HOH
HOH
723
C
HOH
724
5
HOH
HOH
724
C
HOH
725
5
HOH
HOH
725
C
HOH
726
5
HOH
HOH
726
C
HOH
727
5
HOH
HOH
727
C
HOH
728
5
HOH
HOH
728
C
HOH
729
5
HOH
HOH
729
C
HOH
730
5
HOH
HOH
730
C
HOH
731
5
HOH
HOH
731
C
HOH
732
5
HOH
HOH
732
C
HOH
733
5
HOH
HOH
733
C
HOH
734
5
HOH
HOH
734
C
HOH
735
5
HOH
HOH
735
C
HOH
736
5
HOH
HOH
736
C
HOH
737
5
HOH
HOH
737
C
HOH
738
5
HOH
HOH
738
C
HOH
739
5
HOH
HOH
739
C
HOH
601
5
HOH
HOH
601
D
HOH
602
5
HOH
HOH
602
D
HOH
603
5
HOH
HOH
603
D
HOH
604
5
HOH
HOH
604
D
HOH
605
5
HOH
HOH
605
D
HOH
606
5
HOH
HOH
606
D
HOH
607
5
HOH
HOH
607
D
HOH
608
5
HOH
HOH
608
D
HOH
609
5
HOH
HOH
609
D
HOH
610
5
HOH
HOH
610
D
HOH
611
5
HOH
HOH
611
D
HOH
612
5
HOH
HOH
612
D
HOH
613
5
HOH
HOH
613
D
HOH
614
5
HOH
HOH
614
D
HOH
615
5
HOH
HOH
615
D
HOH
616
5
HOH
HOH
616
D
HOH
617
5
HOH
HOH
617
D
HOH
618
5
HOH
HOH
618
D
HOH
619
5
HOH
HOH
619
D
HOH
620
5
HOH
HOH
620
D
HOH
621
5
HOH
HOH
621
D
HOH
622
5
HOH
HOH
622
D
HOH
623
5
HOH
HOH
623
D
HOH
624
5
HOH
HOH
624
D
HOH
625
5
HOH
HOH
625
D
HOH
626
5
HOH
HOH
626
D
HOH
627
5
HOH
HOH
627
D
HOH
628
5
HOH
HOH
628
D
HOH
629
5
HOH
HOH
629
D
HOH
630
5
HOH
HOH
630
D
n
1
164
A
n
2
165
A
n
3
166
A
n
4
167
A
n
5
168
A
n
6
169
A
n
7
170
A
n
8
171
A
n
9
172
A
n
10
173
A
n
11
174
A
n
12
175
A
n
13
176
A
n
14
177
A
n
15
178
A
n
16
179
A
n
17
180
A
n
18
181
A
n
19
182
A
n
20
183
A
n
21
184
A
n
22
185
A
n
23
186
A
n
24
187
A
n
25
188
A
n
26
189
A
n
27
190
A
THR
191
n
28
THR
191
A
LYS
192
n
29
LYS
192
A
SER
193
n
30
SER
193
A
GLN
194
n
31
GLN
194
A
THR
195
n
32
THR
195
A
ASP
196
n
33
ASP
196
A
ARG
197
n
34
ARG
197
A
LEU
198
n
35
LEU
198
A
GLU
199
n
36
GLU
199
A
VAL
200
n
37
VAL
200
A
LEU
201
n
38
LEU
201
A
LEU
202
n
39
LEU
202
A
ASN
203
n
40
ASN
203
A
PRO
204
n
41
PRO
204
A
LYS
205
n
42
LYS
205
A
ASP
206
n
43
ASP
206
A
GLU
207
n
44
GLU
207
A
ILE
208
n
45
ILE
208
A
n
46
209
A
n
47
210
A
n
48
211
A
SER
212
n
49
SER
212
A
GLY
213
n
50
GLY
213
A
LYS
214
n
51
LYS
214
A
PRO
215
n
52
PRO
215
A
PHE
216
n
53
PHE
216
A
ARG
217
n
54
ARG
217
A
GLU
218
n
55
GLU
218
A
LEU
219
n
56
LEU
219
A
GLU
220
n
57
GLU
220
A
SER
221
n
58
SER
221
A
GLU
222
n
59
GLU
222
A
LEU
223
n
60
LEU
223
A
LEU
224
n
61
LEU
224
A
SER
225
n
62
SER
225
A
ARG
226
n
63
ARG
226
A
ARG
227
n
64
ARG
227
A
LYS
228
n
65
LYS
228
A
LYS
229
n
66
LYS
229
A
ASP
230
n
67
ASP
230
A
LEU
231
n
68
LEU
231
A
GLN
232
n
69
GLN
232
A
GLN
233
n
70
GLN
233
A
ILE
234
n
71
ILE
234
A
TYR
235
n
72
TYR
235
A
ALA
236
n
73
ALA
236
A
GLU
237
n
74
GLU
237
A
GLU
238
n
75
GLU
238
A
ARG
239
n
76
ARG
239
A
GLU
240
n
77
GLU
240
A
ASN
241
n
78
ASN
241
A
TYR
242
n
79
TYR
242
A
LEU
243
n
80
LEU
243
A
GLY
244
n
81
GLY
244
A
LYS
245
n
82
LYS
245
A
LEU
246
n
83
LEU
246
A
GLU
247
n
84
GLU
247
A
ARG
248
n
85
ARG
248
A
GLU
249
n
86
GLU
249
A
ILE
250
n
87
ILE
250
A
THR
251
n
88
THR
251
A
ARG
252
n
89
ARG
252
A
PHE
253
n
90
PHE
253
A
PHE
254
n
91
PHE
254
A
VAL
255
n
92
VAL
255
A
ASP
256
n
93
ASP
256
A
ARG
257
n
94
ARG
257
A
GLY
258
n
95
GLY
258
A
PHE
259
n
96
PHE
259
A
LEU
260
n
97
LEU
260
A
GLU
261
n
98
GLU
261
A
ILE
262
n
99
ILE
262
A
LYS
263
n
100
LYS
263
A
SER
264
n
101
SER
264
A
PRO
265
n
102
PRO
265
A
ILE
266
n
103
ILE
266
A
LEU
267
n
104
LEU
267
A
ILE
268
n
105
ILE
268
A
PRO
269
n
106
PRO
269
A
LEU
270
n
107
LEU
270
A
GLU
271
n
108
GLU
271
A
TYR
272
n
109
TYR
272
A
ILE
273
n
110
ILE
273
A
GLU
274
n
111
GLU
274
A
ARG
275
n
112
ARG
275
A
MET
276
n
113
MET
276
A
GLY
277
n
114
GLY
277
A
ILE
278
n
115
ILE
278
A
ASP
279
n
116
ASP
279
A
n
117
280
A
n
118
281
A
n
119
282
A
n
120
283
A
n
121
284
A
n
122
285
A
LYS
286
n
123
LYS
286
A
GLN
287
n
124
GLN
287
A
ILE
288
n
125
ILE
288
A
PHE
289
n
126
PHE
289
A
ARG
290
n
127
ARG
290
A
VAL
291
n
128
VAL
291
A
ASP
292
n
129
ASP
292
A
LYS
293
n
130
LYS
293
A
ASN
294
n
131
ASN
294
A
PHE
295
n
132
PHE
295
A
CYS
296
n
133
CYS
296
A
LEU
297
n
134
LEU
297
A
ARG
298
n
135
ARG
298
A
PRO
299
n
136
PRO
299
A
MET
300
n
137
MET
300
A
LEU
301
n
138
LEU
301
A
ALA
302
n
139
ALA
302
A
PRO
303
n
140
PRO
303
A
ASN
304
n
141
ASN
304
A
LEU
305
n
142
LEU
305
A
TYR
306
n
143
TYR
306
A
ASN
307
n
144
ASN
307
A
TYR
308
n
145
TYR
308
A
LEU
309
n
146
LEU
309
A
ARG
310
n
147
ARG
310
A
LYS
311
n
148
LYS
311
A
LEU
312
n
149
LEU
312
A
ASP
313
n
150
ASP
313
A
ARG
314
n
151
ARG
314
A
ALA
315
n
152
ALA
315
A
LEU
316
n
153
LEU
316
A
PRO
317
n
154
PRO
317
A
ASP
318
n
155
ASP
318
A
PRO
319
n
156
PRO
319
A
ILE
320
n
157
ILE
320
A
LYS
321
n
158
LYS
321
A
ILE
322
n
159
ILE
322
A
PHE
323
n
160
PHE
323
A
GLU
324
n
161
GLU
324
A
ILE
325
n
162
ILE
325
A
GLY
326
n
163
GLY
326
A
PRO
327
n
164
PRO
327
A
CYS
328
n
165
CYS
328
A
TYR
329
n
166
TYR
329
A
ARG
330
n
167
ARG
330
A
LYS
331
n
168
LYS
331
A
GLU
332
n
169
GLU
332
A
n
170
333
A
n
171
334
A
GLY
335
n
172
GLY
335
A
LYS
336
n
173
LYS
336
A
GLU
337
n
174
GLU
337
A
HIS
338
n
175
HIS
338
A
LEU
339
n
176
LEU
339
A
GLU
340
n
177
GLU
340
A
GLU
341
n
178
GLU
341
A
PHE
342
n
179
PHE
342
A
THR
343
n
180
THR
343
A
MET
344
n
181
MET
344
A
LEU
345
n
182
LEU
345
A
ASN
346
n
183
ASN
346
A
PHE
347
n
184
PHE
347
A
CYS
348
n
185
CYS
348
A
GLN
349
n
186
GLN
349
A
MET
350
n
187
MET
350
A
GLY
351
n
188
GLY
351
A
SER
352
n
189
SER
352
A
GLY
353
n
190
GLY
353
A
CYS
354
n
191
CYS
354
A
THR
355
n
192
THR
355
A
ARG
356
n
193
ARG
356
A
GLU
357
n
194
GLU
357
A
ASN
358
n
195
ASN
358
A
LEU
359
n
196
LEU
359
A
GLU
360
n
197
GLU
360
A
SER
361
n
198
SER
361
A
ILE
362
n
199
ILE
362
A
ILE
363
n
200
ILE
363
A
THR
364
n
201
THR
364
A
ASP
365
n
202
ASP
365
A
PHE
366
n
203
PHE
366
A
LEU
367
n
204
LEU
367
A
ASN
368
n
205
ASN
368
A
HIS
369
n
206
HIS
369
A
LEU
370
n
207
LEU
370
A
GLY
371
n
208
GLY
371
A
ILE
372
n
209
ILE
372
A
ASP
373
n
210
ASP
373
A
PHE
374
n
211
PHE
374
A
LYS
375
n
212
LYS
375
A
ILE
376
n
213
ILE
376
A
VAL
377
n
214
VAL
377
A
GLY
378
n
215
GLY
378
A
ASP
379
n
216
ASP
379
A
SER
380
n
217
SER
380
A
CYS
381
n
218
CYS
381
A
MET
382
n
219
MET
382
A
VAL
383
n
220
VAL
383
A
TYR
384
n
221
TYR
384
A
GLY
385
n
222
GLY
385
A
ASP
386
n
223
ASP
386
A
THR
387
n
224
THR
387
A
LEU
388
n
225
LEU
388
A
ASP
389
n
226
ASP
389
A
VAL
390
n
227
VAL
390
A
MET
391
n
228
MET
391
A
HIS
392
n
229
HIS
392
A
GLY
393
n
230
GLY
393
A
ASP
394
n
231
ASP
394
A
LEU
395
n
232
LEU
395
A
GLU
396
n
233
GLU
396
A
LEU
397
n
234
LEU
397
A
SER
398
n
235
SER
398
A
SER
399
n
236
SER
399
A
ALA
400
n
237
ALA
400
A
VAL
401
n
238
VAL
401
A
VAL
402
n
239
VAL
402
A
GLY
403
n
240
GLY
403
A
PRO
404
n
241
PRO
404
A
ILE
405
n
242
ILE
405
A
PRO
406
n
243
PRO
406
A
LEU
407
n
244
LEU
407
A
ASP
408
n
245
ASP
408
A
ARG
409
n
246
ARG
409
A
GLU
410
n
247
GLU
410
A
TRP
411
n
248
TRP
411
A
GLY
412
n
249
GLY
412
A
ILE
413
n
250
ILE
413
A
ASP
414
n
251
ASP
414
A
LYS
415
n
252
LYS
415
A
PRO
416
n
253
PRO
416
A
TRP
417
n
254
TRP
417
A
ILE
418
n
255
ILE
418
A
GLY
419
n
256
GLY
419
A
ALA
420
n
257
ALA
420
A
GLY
421
n
258
GLY
421
A
PHE
422
n
259
PHE
422
A
GLY
423
n
260
GLY
423
A
LEU
424
n
261
LEU
424
A
GLU
425
n
262
GLU
425
A
ARG
426
n
263
ARG
426
A
LEU
427
n
264
LEU
427
A
LEU
428
n
265
LEU
428
A
LYS
429
n
266
LYS
429
A
VAL
430
n
267
VAL
430
A
LYS
431
n
268
LYS
431
A
HIS
432
n
269
HIS
432
A
ASP
433
n
270
ASP
433
A
PHE
434
n
271
PHE
434
A
LYS
435
n
272
LYS
435
A
ASN
436
n
273
ASN
436
A
ILE
437
n
274
ILE
437
A
LYS
438
n
275
LYS
438
A
ARG
439
n
276
ARG
439
A
ALA
440
n
277
ALA
440
A
ALA
441
n
278
ALA
441
A
ARG
442
n
279
ARG
442
A
SER
443
n
280
SER
443
A
GLY
444
n
281
GLY
444
A
SER
445
n
282
SER
445
A
TYR
446
n
283
TYR
446
A
TYR
447
n
284
TYR
447
A
ASN
448
n
285
ASN
448
A
GLY
449
n
286
GLY
449
A
ILE
450
n
287
ILE
450
A
SER
451
n
288
SER
451
A
THR
452
n
289
THR
452
A
ASN
453
n
290
ASN
453
A
LEU
454
n
291
LEU
454
A
n
1
164
B
n
2
165
B
n
3
166
B
n
4
167
B
n
5
168
B
n
6
169
B
n
7
170
B
n
8
171
B
n
9
172
B
n
10
173
B
n
11
174
B
n
12
175
B
n
13
176
B
n
14
177
B
n
15
178
B
n
16
179
B
n
17
180
B
n
18
181
B
n
19
182
B
n
20
183
B
n
21
184
B
n
22
185
B
n
23
186
B
n
24
187
B
PRO
188
n
25
PRO
188
B
ALA
189
n
26
ALA
189
B
LEU
190
n
27
LEU
190
B
THR
191
n
28
THR
191
B
LYS
192
n
29
LYS
192
B
SER
193
n
30
SER
193
B
GLN
194
n
31
GLN
194
B
THR
195
n
32
THR
195
B
ASP
196
n
33
ASP
196
B
ARG
197
n
34
ARG
197
B
LEU
198
n
35
LEU
198
B
GLU
199
n
36
GLU
199
B
VAL
200
n
37
VAL
200
B
LEU
201
n
38
LEU
201
B
LEU
202
n
39
LEU
202
B
ASN
203
n
40
ASN
203
B
PRO
204
n
41
PRO
204
B
LYS
205
n
42
LYS
205
B
ASP
206
n
43
ASP
206
B
GLU
207
n
44
GLU
207
B
ILE
208
n
45
ILE
208
B
n
46
209
B
n
47
210
B
n
48
211
B
n
49
212
B
GLY
213
n
50
GLY
213
B
LYS
214
n
51
LYS
214
B
PRO
215
n
52
PRO
215
B
PHE
216
n
53
PHE
216
B
ARG
217
n
54
ARG
217
B
GLU
218
n
55
GLU
218
B
LEU
219
n
56
LEU
219
B
GLU
220
n
57
GLU
220
B
SER
221
n
58
SER
221
B
GLU
222
n
59
GLU
222
B
LEU
223
n
60
LEU
223
B
LEU
224
n
61
LEU
224
B
SER
225
n
62
SER
225
B
ARG
226
n
63
ARG
226
B
ARG
227
n
64
ARG
227
B
LYS
228
n
65
LYS
228
B
LYS
229
n
66
LYS
229
B
ASP
230
n
67
ASP
230
B
LEU
231
n
68
LEU
231
B
GLN
232
n
69
GLN
232
B
GLN
233
n
70
GLN
233
B
ILE
234
n
71
ILE
234
B
TYR
235
n
72
TYR
235
B
ALA
236
n
73
ALA
236
B
GLU
237
n
74
GLU
237
B
GLU
238
n
75
GLU
238
B
ARG
239
n
76
ARG
239
B
GLU
240
n
77
GLU
240
B
ASN
241
n
78
ASN
241
B
TYR
242
n
79
TYR
242
B
LEU
243
n
80
LEU
243
B
GLY
244
n
81
GLY
244
B
LYS
245
n
82
LYS
245
B
LEU
246
n
83
LEU
246
B
GLU
247
n
84
GLU
247
B
ARG
248
n
85
ARG
248
B
GLU
249
n
86
GLU
249
B
ILE
250
n
87
ILE
250
B
THR
251
n
88
THR
251
B
ARG
252
n
89
ARG
252
B
PHE
253
n
90
PHE
253
B
PHE
254
n
91
PHE
254
B
VAL
255
n
92
VAL
255
B
ASP
256
n
93
ASP
256
B
ARG
257
n
94
ARG
257
B
GLY
258
n
95
GLY
258
B
PHE
259
n
96
PHE
259
B
LEU
260
n
97
LEU
260
B
GLU
261
n
98
GLU
261
B
ILE
262
n
99
ILE
262
B
LYS
263
n
100
LYS
263
B
SER
264
n
101
SER
264
B
PRO
265
n
102
PRO
265
B
ILE
266
n
103
ILE
266
B
LEU
267
n
104
LEU
267
B
ILE
268
n
105
ILE
268
B
PRO
269
n
106
PRO
269
B
LEU
270
n
107
LEU
270
B
GLU
271
n
108
GLU
271
B
TYR
272
n
109
TYR
272
B
ILE
273
n
110
ILE
273
B
GLU
274
n
111
GLU
274
B
ARG
275
n
112
ARG
275
B
MET
276
n
113
MET
276
B
GLY
277
n
114
GLY
277
B
ILE
278
n
115
ILE
278
B
ASP
279
n
116
ASP
279
B
n
117
280
B
n
118
281
B
n
119
282
B
n
120
283
B
n
121
284
B
n
122
285
B
n
123
286
B
GLN
287
n
124
GLN
287
B
ILE
288
n
125
ILE
288
B
PHE
289
n
126
PHE
289
B
ARG
290
n
127
ARG
290
B
VAL
291
n
128
VAL
291
B
ASP
292
n
129
ASP
292
B
LYS
293
n
130
LYS
293
B
ASN
294
n
131
ASN
294
B
PHE
295
n
132
PHE
295
B
CYS
296
n
133
CYS
296
B
LEU
297
n
134
LEU
297
B
ARG
298
n
135
ARG
298
B
PRO
299
n
136
PRO
299
B
MET
300
n
137
MET
300
B
LEU
301
n
138
LEU
301
B
ALA
302
n
139
ALA
302
B
PRO
303
n
140
PRO
303
B
ASN
304
n
141
ASN
304
B
LEU
305
n
142
LEU
305
B
TYR
306
n
143
TYR
306
B
ASN
307
n
144
ASN
307
B
TYR
308
n
145
TYR
308
B
LEU
309
n
146
LEU
309
B
ARG
310
n
147
ARG
310
B
LYS
311
n
148
LYS
311
B
LEU
312
n
149
LEU
312
B
ASP
313
n
150
ASP
313
B
ARG
314
n
151
ARG
314
B
ALA
315
n
152
ALA
315
B
LEU
316
n
153
LEU
316
B
PRO
317
n
154
PRO
317
B
ASP
318
n
155
ASP
318
B
PRO
319
n
156
PRO
319
B
ILE
320
n
157
ILE
320
B
LYS
321
n
158
LYS
321
B
ILE
322
n
159
ILE
322
B
PHE
323
n
160
PHE
323
B
GLU
324
n
161
GLU
324
B
ILE
325
n
162
ILE
325
B
GLY
326
n
163
GLY
326
B
PRO
327
n
164
PRO
327
B
CYS
328
n
165
CYS
328
B
TYR
329
n
166
TYR
329
B
ARG
330
n
167
ARG
330
B
LYS
331
n
168
LYS
331
B
GLU
332
n
169
GLU
332
B
n
170
333
B
ASP
334
n
171
ASP
334
B
GLY
335
n
172
GLY
335
B
LYS
336
n
173
LYS
336
B
GLU
337
n
174
GLU
337
B
HIS
338
n
175
HIS
338
B
LEU
339
n
176
LEU
339
B
GLU
340
n
177
GLU
340
B
GLU
341
n
178
GLU
341
B
PHE
342
n
179
PHE
342
B
THR
343
n
180
THR
343
B
MET
344
n
181
MET
344
B
LEU
345
n
182
LEU
345
B
ASN
346
n
183
ASN
346
B
PHE
347
n
184
PHE
347
B
CYS
348
n
185
CYS
348
B
GLN
349
n
186
GLN
349
B
MET
350
n
187
MET
350
B
GLY
351
n
188
GLY
351
B
SER
352
n
189
SER
352
B
GLY
353
n
190
GLY
353
B
CYS
354
n
191
CYS
354
B
THR
355
n
192
THR
355
B
ARG
356
n
193
ARG
356
B
GLU
357
n
194
GLU
357
B
ASN
358
n
195
ASN
358
B
LEU
359
n
196
LEU
359
B
GLU
360
n
197
GLU
360
B
SER
361
n
198
SER
361
B
ILE
362
n
199
ILE
362
B
ILE
363
n
200
ILE
363
B
THR
364
n
201
THR
364
B
ASP
365
n
202
ASP
365
B
PHE
366
n
203
PHE
366
B
LEU
367
n
204
LEU
367
B
ASN
368
n
205
ASN
368
B
HIS
369
n
206
HIS
369
B
LEU
370
n
207
LEU
370
B
GLY
371
n
208
GLY
371
B
ILE
372
n
209
ILE
372
B
ASP
373
n
210
ASP
373
B
PHE
374
n
211
PHE
374
B
LYS
375
n
212
LYS
375
B
ILE
376
n
213
ILE
376
B
VAL
377
n
214
VAL
377
B
n
215
378
B
n
216
379
B
n
217
380
B
n
218
381
B
n
219
382
B
n
220
383
B
n
221
384
B
n
222
385
B
n
223
386
B
THR
387
n
224
THR
387
B
LEU
388
n
225
LEU
388
B
ASP
389
n
226
ASP
389
B
VAL
390
n
227
VAL
390
B
MET
391
n
228
MET
391
B
HIS
392
n
229
HIS
392
B
GLY
393
n
230
GLY
393
B
ASP
394
n
231
ASP
394
B
LEU
395
n
232
LEU
395
B
GLU
396
n
233
GLU
396
B
LEU
397
n
234
LEU
397
B
SER
398
n
235
SER
398
B
SER
399
n
236
SER
399
B
ALA
400
n
237
ALA
400
B
VAL
401
n
238
VAL
401
B
VAL
402
n
239
VAL
402
B
GLY
403
n
240
GLY
403
B
PRO
404
n
241
PRO
404
B
ILE
405
n
242
ILE
405
B
PRO
406
n
243
PRO
406
B
LEU
407
n
244
LEU
407
B
ASP
408
n
245
ASP
408
B
ARG
409
n
246
ARG
409
B
GLU
410
n
247
GLU
410
B
TRP
411
n
248
TRP
411
B
GLY
412
n
249
GLY
412
B
ILE
413
n
250
ILE
413
B
ASP
414
n
251
ASP
414
B
LYS
415
n
252
LYS
415
B
PRO
416
n
253
PRO
416
B
TRP
417
n
254
TRP
417
B
ILE
418
n
255
ILE
418
B
GLY
419
n
256
GLY
419
B
ALA
420
n
257
ALA
420
B
GLY
421
n
258
GLY
421
B
PHE
422
n
259
PHE
422
B
GLY
423
n
260
GLY
423
B
LEU
424
n
261
LEU
424
B
GLU
425
n
262
GLU
425
B
ARG
426
n
263
ARG
426
B
LEU
427
n
264
LEU
427
B
LEU
428
n
265
LEU
428
B
LYS
429
n
266
LYS
429
B
VAL
430
n
267
VAL
430
B
LYS
431
n
268
LYS
431
B
HIS
432
n
269
HIS
432
B
ASP
433
n
270
ASP
433
B
PHE
434
n
271
PHE
434
B
LYS
435
n
272
LYS
435
B
ASN
436
n
273
ASN
436
B
ILE
437
n
274
ILE
437
B
LYS
438
n
275
LYS
438
B
ARG
439
n
276
ARG
439
B
ALA
440
n
277
ALA
440
B
ALA
441
n
278
ALA
441
B
ARG
442
n
279
ARG
442
B
SER
443
n
280
SER
443
B
GLY
444
n
281
GLY
444
B
SER
445
n
282
SER
445
B
TYR
446
n
283
TYR
446
B
TYR
447
n
284
TYR
447
B
ASN
448
n
285
ASN
448
B
GLY
449
n
286
GLY
449
B
ILE
450
n
287
ILE
450
B
SER
451
n
288
SER
451
B
THR
452
n
289
THR
452
B
ASN
453
n
290
ASN
453
B
LEU
454
n
291
LEU
454
B
n
1
164
C
n
2
165
C
n
3
166
C
n
4
167
C
n
5
168
C
n
6
169
C
n
7
170
C
n
8
171
C
n
9
172
C
n
10
173
C
n
11
174
C
n
12
175
C
n
13
176
C
n
14
177
C
n
15
178
C
n
16
179
C
n
17
180
C
n
18
181
C
n
19
182
C
n
20
183
C
n
21
184
C
n
22
185
C
n
23
186
C
n
24
187
C
n
25
188
C
n
26
189
C
LEU
190
n
27
LEU
190
C
THR
191
n
28
THR
191
C
LYS
192
n
29
LYS
192
C
SER
193
n
30
SER
193
C
GLN
194
n
31
GLN
194
C
THR
195
n
32
THR
195
C
ASP
196
n
33
ASP
196
C
ARG
197
n
34
ARG
197
C
LEU
198
n
35
LEU
198
C
GLU
199
n
36
GLU
199
C
VAL
200
n
37
VAL
200
C
LEU
201
n
38
LEU
201
C
LEU
202
n
39
LEU
202
C
ASN
203
n
40
ASN
203
C
PRO
204
n
41
PRO
204
C
LYS
205
n
42
LYS
205
C
ASP
206
n
43
ASP
206
C
GLU
207
n
44
GLU
207
C
n
45
208
C
n
46
209
C
n
47
210
C
n
48
211
C
SER
212
n
49
SER
212
C
GLY
213
n
50
GLY
213
C
LYS
214
n
51
LYS
214
C
PRO
215
n
52
PRO
215
C
PHE
216
n
53
PHE
216
C
ARG
217
n
54
ARG
217
C
GLU
218
n
55
GLU
218
C
LEU
219
n
56
LEU
219
C
GLU
220
n
57
GLU
220
C
SER
221
n
58
SER
221
C
GLU
222
n
59
GLU
222
C
LEU
223
n
60
LEU
223
C
LEU
224
n
61
LEU
224
C
SER
225
n
62
SER
225
C
ARG
226
n
63
ARG
226
C
ARG
227
n
64
ARG
227
C
LYS
228
n
65
LYS
228
C
LYS
229
n
66
LYS
229
C
ASP
230
n
67
ASP
230
C
LEU
231
n
68
LEU
231
C
GLN
232
n
69
GLN
232
C
GLN
233
n
70
GLN
233
C
ILE
234
n
71
ILE
234
C
TYR
235
n
72
TYR
235
C
ALA
236
n
73
ALA
236
C
GLU
237
n
74
GLU
237
C
GLU
238
n
75
GLU
238
C
ARG
239
n
76
ARG
239
C
GLU
240
n
77
GLU
240
C
ASN
241
n
78
ASN
241
C
TYR
242
n
79
TYR
242
C
LEU
243
n
80
LEU
243
C
GLY
244
n
81
GLY
244
C
LYS
245
n
82
LYS
245
C
LEU
246
n
83
LEU
246
C
GLU
247
n
84
GLU
247
C
ARG
248
n
85
ARG
248
C
GLU
249
n
86
GLU
249
C
ILE
250
n
87
ILE
250
C
THR
251
n
88
THR
251
C
ARG
252
n
89
ARG
252
C
PHE
253
n
90
PHE
253
C
PHE
254
n
91
PHE
254
C
VAL
255
n
92
VAL
255
C
ASP
256
n
93
ASP
256
C
ARG
257
n
94
ARG
257
C
GLY
258
n
95
GLY
258
C
PHE
259
n
96
PHE
259
C
LEU
260
n
97
LEU
260
C
GLU
261
n
98
GLU
261
C
ILE
262
n
99
ILE
262
C
LYS
263
n
100
LYS
263
C
SER
264
n
101
SER
264
C
PRO
265
n
102
PRO
265
C
ILE
266
n
103
ILE
266
C
LEU
267
n
104
LEU
267
C
ILE
268
n
105
ILE
268
C
PRO
269
n
106
PRO
269
C
LEU
270
n
107
LEU
270
C
GLU
271
n
108
GLU
271
C
TYR
272
n
109
TYR
272
C
ILE
273
n
110
ILE
273
C
GLU
274
n
111
GLU
274
C
ARG
275
n
112
ARG
275
C
MET
276
n
113
MET
276
C
GLY
277
n
114
GLY
277
C
ILE
278
n
115
ILE
278
C
ASP
279
n
116
ASP
279
C
ASN
280
n
117
ASN
280
C
ASP
281
n
118
ASP
281
C
n
119
282
C
n
120
283
C
LEU
284
n
121
LEU
284
C
SER
285
n
122
SER
285
C
LYS
286
n
123
LYS
286
C
GLN
287
n
124
GLN
287
C
ILE
288
n
125
ILE
288
C
PHE
289
n
126
PHE
289
C
ARG
290
n
127
ARG
290
C
VAL
291
n
128
VAL
291
C
ASP
292
n
129
ASP
292
C
LYS
293
n
130
LYS
293
C
ASN
294
n
131
ASN
294
C
PHE
295
n
132
PHE
295
C
CYS
296
n
133
CYS
296
C
LEU
297
n
134
LEU
297
C
ARG
298
n
135
ARG
298
C
PRO
299
n
136
PRO
299
C
MET
300
n
137
MET
300
C
LEU
301
n
138
LEU
301
C
ALA
302
n
139
ALA
302
C
PRO
303
n
140
PRO
303
C
ASN
304
n
141
ASN
304
C
LEU
305
n
142
LEU
305
C
TYR
306
n
143
TYR
306
C
ASN
307
n
144
ASN
307
C
TYR
308
n
145
TYR
308
C
LEU
309
n
146
LEU
309
C
ARG
310
n
147
ARG
310
C
LYS
311
n
148
LYS
311
C
LEU
312
n
149
LEU
312
C
ASP
313
n
150
ASP
313
C
ARG
314
n
151
ARG
314
C
ALA
315
n
152
ALA
315
C
LEU
316
n
153
LEU
316
C
PRO
317
n
154
PRO
317
C
ASP
318
n
155
ASP
318
C
PRO
319
n
156
PRO
319
C
ILE
320
n
157
ILE
320
C
LYS
321
n
158
LYS
321
C
ILE
322
n
159
ILE
322
C
PHE
323
n
160
PHE
323
C
GLU
324
n
161
GLU
324
C
ILE
325
n
162
ILE
325
C
GLY
326
n
163
GLY
326
C
PRO
327
n
164
PRO
327
C
CYS
328
n
165
CYS
328
C
TYR
329
n
166
TYR
329
C
ARG
330
n
167
ARG
330
C
LYS
331
n
168
LYS
331
C
n
169
332
C
n
170
333
C
n
171
334
C
GLY
335
n
172
GLY
335
C
LYS
336
n
173
LYS
336
C
GLU
337
n
174
GLU
337
C
HIS
338
n
175
HIS
338
C
LEU
339
n
176
LEU
339
C
GLU
340
n
177
GLU
340
C
GLU
341
n
178
GLU
341
C
PHE
342
n
179
PHE
342
C
THR
343
n
180
THR
343
C
MET
344
n
181
MET
344
C
LEU
345
n
182
LEU
345
C
ASN
346
n
183
ASN
346
C
PHE
347
n
184
PHE
347
C
CYS
348
n
185
CYS
348
C
GLN
349
n
186
GLN
349
C
MET
350
n
187
MET
350
C
GLY
351
n
188
GLY
351
C
SER
352
n
189
SER
352
C
GLY
353
n
190
GLY
353
C
CYS
354
n
191
CYS
354
C
THR
355
n
192
THR
355
C
ARG
356
n
193
ARG
356
C
GLU
357
n
194
GLU
357
C
ASN
358
n
195
ASN
358
C
LEU
359
n
196
LEU
359
C
GLU
360
n
197
GLU
360
C
SER
361
n
198
SER
361
C
ILE
362
n
199
ILE
362
C
ILE
363
n
200
ILE
363
C
THR
364
n
201
THR
364
C
ASP
365
n
202
ASP
365
C
PHE
366
n
203
PHE
366
C
LEU
367
n
204
LEU
367
C
ASN
368
n
205
ASN
368
C
HIS
369
n
206
HIS
369
C
LEU
370
n
207
LEU
370
C
GLY
371
n
208
GLY
371
C
ILE
372
n
209
ILE
372
C
ASP
373
n
210
ASP
373
C
PHE
374
n
211
PHE
374
C
LYS
375
n
212
LYS
375
C
ILE
376
n
213
ILE
376
C
VAL
377
n
214
VAL
377
C
GLY
378
n
215
GLY
378
C
n
216
379
C
n
217
380
C
CYS
381
n
218
CYS
381
C
MET
382
n
219
MET
382
C
VAL
383
n
220
VAL
383
C
TYR
384
n
221
TYR
384
C
GLY
385
n
222
GLY
385
C
ASP
386
n
223
ASP
386
C
THR
387
n
224
THR
387
C
LEU
388
n
225
LEU
388
C
ASP
389
n
226
ASP
389
C
VAL
390
n
227
VAL
390
C
MET
391
n
228
MET
391
C
HIS
392
n
229
HIS
392
C
GLY
393
n
230
GLY
393
C
ASP
394
n
231
ASP
394
C
LEU
395
n
232
LEU
395
C
GLU
396
n
233
GLU
396
C
LEU
397
n
234
LEU
397
C
SER
398
n
235
SER
398
C
SER
399
n
236
SER
399
C
ALA
400
n
237
ALA
400
C
VAL
401
n
238
VAL
401
C
VAL
402
n
239
VAL
402
C
GLY
403
n
240
GLY
403
C
PRO
404
n
241
PRO
404
C
ILE
405
n
242
ILE
405
C
PRO
406
n
243
PRO
406
C
LEU
407
n
244
LEU
407
C
ASP
408
n
245
ASP
408
C
ARG
409
n
246
ARG
409
C
GLU
410
n
247
GLU
410
C
TRP
411
n
248
TRP
411
C
GLY
412
n
249
GLY
412
C
ILE
413
n
250
ILE
413
C
ASP
414
n
251
ASP
414
C
LYS
415
n
252
LYS
415
C
PRO
416
n
253
PRO
416
C
TRP
417
n
254
TRP
417
C
ILE
418
n
255
ILE
418
C
GLY
419
n
256
GLY
419
C
ALA
420
n
257
ALA
420
C
GLY
421
n
258
GLY
421
C
PHE
422
n
259
PHE
422
C
GLY
423
n
260
GLY
423
C
LEU
424
n
261
LEU
424
C
GLU
425
n
262
GLU
425
C
ARG
426
n
263
ARG
426
C
LEU
427
n
264
LEU
427
C
LEU
428
n
265
LEU
428
C
LYS
429
n
266
LYS
429
C
VAL
430
n
267
VAL
430
C
LYS
431
n
268
LYS
431
C
HIS
432
n
269
HIS
432
C
ASP
433
n
270
ASP
433
C
PHE
434
n
271
PHE
434
C
LYS
435
n
272
LYS
435
C
ASN
436
n
273
ASN
436
C
ILE
437
n
274
ILE
437
C
LYS
438
n
275
LYS
438
C
ARG
439
n
276
ARG
439
C
ALA
440
n
277
ALA
440
C
ALA
441
n
278
ALA
441
C
ARG
442
n
279
ARG
442
C
SER
443
n
280
SER
443
C
GLY
444
n
281
GLY
444
C
SER
445
n
282
SER
445
C
TYR
446
n
283
TYR
446
C
TYR
447
n
284
TYR
447
C
ASN
448
n
285
ASN
448
C
GLY
449
n
286
GLY
449
C
ILE
450
n
287
ILE
450
C
SER
451
n
288
SER
451
C
THR
452
n
289
THR
452
C
ASN
453
n
290
ASN
453
C
LEU
454
n
291
LEU
454
C
n
1
164
D
n
2
165
D
n
3
166
D
n
4
167
D
n
5
168
D
n
6
169
D
n
7
170
D
n
8
171
D
n
9
172
D
n
10
173
D
n
11
174
D
n
12
175
D
n
13
176
D
n
14
177
D
n
15
178
D
n
16
179
D
n
17
180
D
n
18
181
D
n
19
182
D
n
20
183
D
n
21
184
D
n
22
185
D
n
23
186
D
n
24
187
D
n
25
188
D
n
26
189
D
n
27
190
D
THR
191
n
28
THR
191
D
LYS
192
n
29
LYS
192
D
SER
193
n
30
SER
193
D
GLN
194
n
31
GLN
194
D
THR
195
n
32
THR
195
D
ASP
196
n
33
ASP
196
D
ARG
197
n
34
ARG
197
D
LEU
198
n
35
LEU
198
D
GLU
199
n
36
GLU
199
D
VAL
200
n
37
VAL
200
D
LEU
201
n
38
LEU
201
D
LEU
202
n
39
LEU
202
D
ASN
203
n
40
ASN
203
D
PRO
204
n
41
PRO
204
D
LYS
205
n
42
LYS
205
D
ASP
206
n
43
ASP
206
D
GLU
207
n
44
GLU
207
D
n
45
208
D
n
46
209
D
LEU
210
n
47
LEU
210
D
ASN
211
n
48
ASN
211
D
SER
212
n
49
SER
212
D
GLY
213
n
50
GLY
213
D
LYS
214
n
51
LYS
214
D
PRO
215
n
52
PRO
215
D
PHE
216
n
53
PHE
216
D
ARG
217
n
54
ARG
217
D
GLU
218
n
55
GLU
218
D
LEU
219
n
56
LEU
219
D
GLU
220
n
57
GLU
220
D
SER
221
n
58
SER
221
D
GLU
222
n
59
GLU
222
D
LEU
223
n
60
LEU
223
D
LEU
224
n
61
LEU
224
D
SER
225
n
62
SER
225
D
ARG
226
n
63
ARG
226
D
ARG
227
n
64
ARG
227
D
LYS
228
n
65
LYS
228
D
LYS
229
n
66
LYS
229
D
ASP
230
n
67
ASP
230
D
LEU
231
n
68
LEU
231
D
GLN
232
n
69
GLN
232
D
GLN
233
n
70
GLN
233
D
ILE
234
n
71
ILE
234
D
TYR
235
n
72
TYR
235
D
ALA
236
n
73
ALA
236
D
GLU
237
n
74
GLU
237
D
GLU
238
n
75
GLU
238
D
ARG
239
n
76
ARG
239
D
GLU
240
n
77
GLU
240
D
ASN
241
n
78
ASN
241
D
TYR
242
n
79
TYR
242
D
LEU
243
n
80
LEU
243
D
GLY
244
n
81
GLY
244
D
LYS
245
n
82
LYS
245
D
LEU
246
n
83
LEU
246
D
GLU
247
n
84
GLU
247
D
ARG
248
n
85
ARG
248
D
GLU
249
n
86
GLU
249
D
ILE
250
n
87
ILE
250
D
THR
251
n
88
THR
251
D
ARG
252
n
89
ARG
252
D
PHE
253
n
90
PHE
253
D
PHE
254
n
91
PHE
254
D
VAL
255
n
92
VAL
255
D
ASP
256
n
93
ASP
256
D
ARG
257
n
94
ARG
257
D
GLY
258
n
95
GLY
258
D
PHE
259
n
96
PHE
259
D
LEU
260
n
97
LEU
260
D
GLU
261
n
98
GLU
261
D
ILE
262
n
99
ILE
262
D
LYS
263
n
100
LYS
263
D
SER
264
n
101
SER
264
D
PRO
265
n
102
PRO
265
D
ILE
266
n
103
ILE
266
D
LEU
267
n
104
LEU
267
D
ILE
268
n
105
ILE
268
D
PRO
269
n
106
PRO
269
D
LEU
270
n
107
LEU
270
D
GLU
271
n
108
GLU
271
D
TYR
272
n
109
TYR
272
D
ILE
273
n
110
ILE
273
D
GLU
274
n
111
GLU
274
D
ARG
275
n
112
ARG
275
D
MET
276
n
113
MET
276
D
GLY
277
n
114
GLY
277
D
ILE
278
n
115
ILE
278
D
ASP
279
n
116
ASP
279
D
n
117
280
D
n
118
281
D
n
119
282
D
GLU
283
n
120
GLU
283
D
LEU
284
n
121
LEU
284
D
SER
285
n
122
SER
285
D
LYS
286
n
123
LYS
286
D
GLN
287
n
124
GLN
287
D
ILE
288
n
125
ILE
288
D
PHE
289
n
126
PHE
289
D
ARG
290
n
127
ARG
290
D
VAL
291
n
128
VAL
291
D
ASP
292
n
129
ASP
292
D
LYS
293
n
130
LYS
293
D
ASN
294
n
131
ASN
294
D
PHE
295
n
132
PHE
295
D
CYS
296
n
133
CYS
296
D
LEU
297
n
134
LEU
297
D
ARG
298
n
135
ARG
298
D
PRO
299
n
136
PRO
299
D
MET
300
n
137
MET
300
D
LEU
301
n
138
LEU
301
D
ALA
302
n
139
ALA
302
D
PRO
303
n
140
PRO
303
D
ASN
304
n
141
ASN
304
D
LEU
305
n
142
LEU
305
D
TYR
306
n
143
TYR
306
D
ASN
307
n
144
ASN
307
D
TYR
308
n
145
TYR
308
D
LEU
309
n
146
LEU
309
D
ARG
310
n
147
ARG
310
D
LYS
311
n
148
LYS
311
D
LEU
312
n
149
LEU
312
D
ASP
313
n
150
ASP
313
D
ARG
314
n
151
ARG
314
D
ALA
315
n
152
ALA
315
D
LEU
316
n
153
LEU
316
D
PRO
317
n
154
PRO
317
D
ASP
318
n
155
ASP
318
D
PRO
319
n
156
PRO
319
D
ILE
320
n
157
ILE
320
D
LYS
321
n
158
LYS
321
D
ILE
322
n
159
ILE
322
D
PHE
323
n
160
PHE
323
D
GLU
324
n
161
GLU
324
D
ILE
325
n
162
ILE
325
D
GLY
326
n
163
GLY
326
D
PRO
327
n
164
PRO
327
D
CYS
328
n
165
CYS
328
D
TYR
329
n
166
TYR
329
D
ARG
330
n
167
ARG
330
D
LYS
331
n
168
LYS
331
D
GLU
332
n
169
GLU
332
D
n
170
333
D
n
171
334
D
GLY
335
n
172
GLY
335
D
LYS
336
n
173
LYS
336
D
GLU
337
n
174
GLU
337
D
HIS
338
n
175
HIS
338
D
LEU
339
n
176
LEU
339
D
GLU
340
n
177
GLU
340
D
GLU
341
n
178
GLU
341
D
PHE
342
n
179
PHE
342
D
THR
343
n
180
THR
343
D
MET
344
n
181
MET
344
D
LEU
345
n
182
LEU
345
D
ASN
346
n
183
ASN
346
D
PHE
347
n
184
PHE
347
D
CYS
348
n
185
CYS
348
D
GLN
349
n
186
GLN
349
D
MET
350
n
187
MET
350
D
GLY
351
n
188
GLY
351
D
SER
352
n
189
SER
352
D
GLY
353
n
190
GLY
353
D
CYS
354
n
191
CYS
354
D
THR
355
n
192
THR
355
D
ARG
356
n
193
ARG
356
D
GLU
357
n
194
GLU
357
D
ASN
358
n
195
ASN
358
D
LEU
359
n
196
LEU
359
D
GLU
360
n
197
GLU
360
D
SER
361
n
198
SER
361
D
ILE
362
n
199
ILE
362
D
ILE
363
n
200
ILE
363
D
THR
364
n
201
THR
364
D
ASP
365
n
202
ASP
365
D
PHE
366
n
203
PHE
366
D
LEU
367
n
204
LEU
367
D
ASN
368
n
205
ASN
368
D
HIS
369
n
206
HIS
369
D
LEU
370
n
207
LEU
370
D
GLY
371
n
208
GLY
371
D
ILE
372
n
209
ILE
372
D
ASP
373
n
210
ASP
373
D
PHE
374
n
211
PHE
374
D
LYS
375
n
212
LYS
375
D
ILE
376
n
213
ILE
376
D
VAL
377
n
214
VAL
377
D
GLY
378
n
215
GLY
378
D
ASP
379
n
216
ASP
379
D
SER
380
n
217
SER
380
D
CYS
381
n
218
CYS
381
D
MET
382
n
219
MET
382
D
VAL
383
n
220
VAL
383
D
TYR
384
n
221
TYR
384
D
GLY
385
n
222
GLY
385
D
ASP
386
n
223
ASP
386
D
THR
387
n
224
THR
387
D
LEU
388
n
225
LEU
388
D
ASP
389
n
226
ASP
389
D
VAL
390
n
227
VAL
390
D
MET
391
n
228
MET
391
D
HIS
392
n
229
HIS
392
D
GLY
393
n
230
GLY
393
D
ASP
394
n
231
ASP
394
D
LEU
395
n
232
LEU
395
D
GLU
396
n
233
GLU
396
D
LEU
397
n
234
LEU
397
D
SER
398
n
235
SER
398
D
SER
399
n
236
SER
399
D
ALA
400
n
237
ALA
400
D
VAL
401
n
238
VAL
401
D
VAL
402
n
239
VAL
402
D
GLY
403
n
240
GLY
403
D
PRO
404
n
241
PRO
404
D
ILE
405
n
242
ILE
405
D
PRO
406
n
243
PRO
406
D
LEU
407
n
244
LEU
407
D
ASP
408
n
245
ASP
408
D
ARG
409
n
246
ARG
409
D
GLU
410
n
247
GLU
410
D
TRP
411
n
248
TRP
411
D
GLY
412
n
249
GLY
412
D
ILE
413
n
250
ILE
413
D
ASP
414
n
251
ASP
414
D
LYS
415
n
252
LYS
415
D
PRO
416
n
253
PRO
416
D
TRP
417
n
254
TRP
417
D
ILE
418
n
255
ILE
418
D
GLY
419
n
256
GLY
419
D
ALA
420
n
257
ALA
420
D
GLY
421
n
258
GLY
421
D
PHE
422
n
259
PHE
422
D
GLY
423
n
260
GLY
423
D
LEU
424
n
261
LEU
424
D
GLU
425
n
262
GLU
425
D
ARG
426
n
263
ARG
426
D
LEU
427
n
264
LEU
427
D
LEU
428
n
265
LEU
428
D
LYS
429
n
266
LYS
429
D
VAL
430
n
267
VAL
430
D
LYS
431
n
268
LYS
431
D
HIS
432
n
269
HIS
432
D
ASP
433
n
270
ASP
433
D
PHE
434
n
271
PHE
434
D
LYS
435
n
272
LYS
435
D
ASN
436
n
273
ASN
436
D
ILE
437
n
274
ILE
437
D
LYS
438
n
275
LYS
438
D
ARG
439
n
276
ARG
439
D
ALA
440
n
277
ALA
440
D
ALA
441
n
278
ALA
441
D
ARG
442
n
279
ARG
442
D
SER
443
n
280
SER
443
D
GLY
444
n
281
GLY
444
D
SER
445
n
282
SER
445
D
TYR
446
n
283
TYR
446
D
TYR
447
n
284
TYR
447
D
ASN
448
n
285
ASN
448
D
GLY
449
n
286
GLY
449
D
ILE
450
n
287
ILE
450
D
SER
451
n
288
SER
451
D
THR
452
n
289
THR
452
D
ASN
453
n
290
ASN
453
D
LEU
454
n
291
LEU
454
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
6360
-34
22670
5060
-34
23190
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
260
A
N
LEU
97
A
O
LYS
321
A
O
LYS
158
A
N
GLY
326
A
N
GLY
163
A
O
MET
344
A
O
MET
181
A
N
LEU
345
A
N
LEU
182
A
O
PHE
422
A
O
PHE
259
A
O
GLY
419
A
O
GLY
256
A
N
VAL
401
A
N
VAL
238
A
O
LEU
397
A
O
LEU
234
A
N
VAL
390
A
N
VAL
227
A
O
MET
391
A
O
MET
228
A
N
LYS
375
A
N
LYS
212
A
N
ILE
268
A
N
ILE
105
A
O
CYS
296
A
O
CYS
133
A
O
PHE
295
A
O
PHE
132
A
N
VAL
291
A
N
VAL
128
A
N
TYR
447
A
N
TYR
284
A
O
ILE
450
A
O
ILE
287
B
N
ILE
262
B
N
ILE
99
B
O
PHE
323
B
O
PHE
160
B
N
GLY
326
B
N
GLY
163
B
O
MET
344
B
O
MET
181
B
N
LEU
345
B
N
LEU
182
B
O
PHE
422
B
O
PHE
259
B
O
GLY
419
B
O
GLY
256
B
N
VAL
401
B
N
VAL
238
B
O
LEU
397
B
O
LEU
234
B
N
VAL
390
B
N
VAL
227
B
O
MET
391
B
O
MET
228
B
N
LYS
375
B
N
LYS
212
B
N
ILE
268
B
N
ILE
105
B
O
CYS
296
B
O
CYS
133
B
O
PHE
295
B
O
PHE
132
B
N
VAL
291
B
N
VAL
128
B
N
TYR
447
B
N
TYR
284
B
O
ILE
450
B
O
ILE
287
C
N
LEU
260
C
N
LEU
97
C
O
LYS
321
C
O
LYS
158
C
N
ILE
320
C
N
ILE
157
C
O
MET
350
C
O
MET
187
C
N
GLN
349
C
N
GLN
186
C
O
ILE
418
C
O
ILE
255
C
O
GLY
419
C
O
GLY
256
C
N
VAL
401
C
N
VAL
238
C
O
LEU
397
C
O
LEU
234
C
N
VAL
390
C
N
VAL
227
C
O
MET
391
C
O
MET
228
C
N
LYS
375
C
N
LYS
212
C
N
ILE
268
C
N
ILE
105
C
O
CYS
296
C
O
CYS
133
C
O
PHE
295
C
O
PHE
132
C
N
VAL
291
C
N
VAL
128
C
N
TYR
447
C
N
TYR
284
C
O
ILE
450
C
O
ILE
287
D
N
LEU
260
D
N
LEU
97
D
O
LYS
321
D
O
LYS
158
D
N
GLU
324
D
N
GLU
161
D
O
ASN
346
D
O
ASN
183
D
N
LEU
345
D
N
LEU
182
D
O
PHE
422
D
O
PHE
259
D
O
GLY
419
D
O
GLY
256
D
N
VAL
401
D
N
VAL
238
D
O
LEU
397
D
O
LEU
234
D
N
VAL
390
D
N
VAL
227
D
O
MET
391
D
O
MET
228
D
N
LYS
375
D
N
LYS
212
D
N
ILE
268
D
N
ILE
105
D
O
CYS
296
D
O
CYS
133
D
O
PHE
295
D
O
PHE
132
D
N
VAL
291
D
N
VAL
128
D
N
TYR
447
D
N
TYR
284
D
O
ILE
450
D
O
ILE
287
1
A
MET
164
A
MET
1
1
Y
1
A
GLY
165
A
GLY
2
1
Y
1
A
SER
166
A
SER
3
1
Y
1
A
SER
167
A
SER
4
1
Y
1
A
HIS
168
A
HIS
5
1
Y
1
A
HIS
169
A
HIS
6
1
Y
1
A
HIS
170
A
HIS
7
1
Y
1
A
HIS
171
A
HIS
8
1
Y
1
A
HIS
172
A
HIS
9
1
Y
1
A
HIS
173
A
HIS
10
1
Y
1
A
SER
174
A
SER
11
1
Y
1
A
SER
175
A
SER
12
1
Y
1
A
GLY
176
A
GLY
13
1
Y
1
A
LEU
177
A
LEU
14
1
Y
1
A
VAL
178
A
VAL
15
1
Y
1
A
PRO
179
A
PRO
16
1
Y
1
A
ARG
180
A
ARG
17
1
Y
1
A
GLY
181
A
GLY
18
1
Y
1
A
SER
182
A
SER
19
1
Y
1
A
HIS
183
A
HIS
20
1
Y
1
A
MET
184
A
MET
21
1
Y
1
A
ALA
185
A
ALA
22
1
Y
1
A
SER
186
A
SER
23
1
Y
1
A
ALA
187
A
ALA
24
1
Y
1
A
PRO
188
A
PRO
25
1
Y
1
A
ALA
189
A
ALA
26
1
Y
1
A
LEU
190
A
LEU
27
1
Y
1
A
SER
209
A
SER
46
1
Y
1
A
LEU
210
A
LEU
47
1
Y
1
A
ASN
211
A
ASN
48
1
Y
1
A
ASN
280
A
ASN
117
1
Y
1
A
ASP
281
A
ASP
118
1
Y
1
A
THR
282
A
THR
119
1
Y
1
A
GLU
283
A
GLU
120
1
Y
1
A
LEU
284
A
LEU
121
1
Y
1
A
SER
285
A
SER
122
1
Y
1
A
SER
333
A
SER
170
1
Y
1
A
ASP
334
A
ASP
171
1
Y
1
B
MET
164
B
MET
1
1
Y
1
B
GLY
165
B
GLY
2
1
Y
1
B
SER
166
B
SER
3
1
Y
1
B
SER
167
B
SER
4
1
Y
1
B
HIS
168
B
HIS
5
1
Y
1
B
HIS
169
B
HIS
6
1
Y
1
B
HIS
170
B
HIS
7
1
Y
1
B
HIS
171
B
HIS
8
1
Y
1
B
HIS
172
B
HIS
9
1
Y
1
B
HIS
173
B
HIS
10
1
Y
1
B
SER
174
B
SER
11
1
Y
1
B
SER
175
B
SER
12
1
Y
1
B
GLY
176
B
GLY
13
1
Y
1
B
LEU
177
B
LEU
14
1
Y
1
B
VAL
178
B
VAL
15
1
Y
1
B
PRO
179
B
PRO
16
1
Y
1
B
ARG
180
B
ARG
17
1
Y
1
B
GLY
181
B
GLY
18
1
Y
1
B
SER
182
B
SER
19
1
Y
1
B
HIS
183
B
HIS
20
1
Y
1
B
MET
184
B
MET
21
1
Y
1
B
ALA
185
B
ALA
22
1
Y
1
B
SER
186
B
SER
23
1
Y
1
B
ALA
187
B
ALA
24
1
Y
1
B
SER
209
B
SER
46
1
Y
1
B
LEU
210
B
LEU
47
1
Y
1
B
ASN
211
B
ASN
48
1
Y
1
B
SER
212
B
SER
49
1
Y
1
B
ASN
280
B
ASN
117
1
Y
1
B
ASP
281
B
ASP
118
1
Y
1
B
THR
282
B
THR
119
1
Y
1
B
GLU
283
B
GLU
120
1
Y
1
B
LEU
284
B
LEU
121
1
Y
1
B
SER
285
B
SER
122
1
Y
1
B
LYS
286
B
LYS
123
1
Y
1
B
SER
333
B
SER
170
1
Y
1
B
GLY
378
B
GLY
215
1
Y
1
B
ASP
379
B
ASP
216
1
Y
1
B
SER
380
B
SER
217
1
Y
1
B
CYS
381
B
CYS
218
1
Y
1
B
MET
382
B
MET
219
1
Y
1
B
VAL
383
B
VAL
220
1
Y
1
B
TYR
384
B
TYR
221
1
Y
1
B
GLY
385
B
GLY
222
1
Y
1
B
ASP
386
B
ASP
223
1
Y
1
C
MET
164
C
MET
1
1
Y
1
C
GLY
165
C
GLY
2
1
Y
1
C
SER
166
C
SER
3
1
Y
1
C
SER
167
C
SER
4
1
Y
1
C
HIS
168
C
HIS
5
1
Y
1
C
HIS
169
C
HIS
6
1
Y
1
C
HIS
170
C
HIS
7
1
Y
1
C
HIS
171
C
HIS
8
1
Y
1
C
HIS
172
C
HIS
9
1
Y
1
C
HIS
173
C
HIS
10
1
Y
1
C
SER
174
C
SER
11
1
Y
1
C
SER
175
C
SER
12
1
Y
1
C
GLY
176
C
GLY
13
1
Y
1
C
LEU
177
C
LEU
14
1
Y
1
C
VAL
178
C
VAL
15
1
Y
1
C
PRO
179
C
PRO
16
1
Y
1
C
ARG
180
C
ARG
17
1
Y
1
C
GLY
181
C
GLY
18
1
Y
1
C
SER
182
C
SER
19
1
Y
1
C
HIS
183
C
HIS
20
1
Y
1
C
MET
184
C
MET
21
1
Y
1
C
ALA
185
C
ALA
22
1
Y
1
C
SER
186
C
SER
23
1
Y
1
C
ALA
187
C
ALA
24
1
Y
1
C
PRO
188
C
PRO
25
1
Y
1
C
ALA
189
C
ALA
26
1
Y
1
C
ILE
208
C
ILE
45
1
Y
1
C
SER
209
C
SER
46
1
Y
1
C
LEU
210
C
LEU
47
1
Y
1
C
ASN
211
C
ASN
48
1
Y
1
C
THR
282
C
THR
119
1
Y
1
C
GLU
283
C
GLU
120
1
Y
1
C
GLU
332
C
GLU
169
1
Y
1
C
SER
333
C
SER
170
1
Y
1
C
ASP
334
C
ASP
171
1
Y
1
C
ASP
379
C
ASP
216
1
Y
1
C
SER
380
C
SER
217
1
Y
1
D
MET
164
D
MET
1
1
Y
1
D
GLY
165
D
GLY
2
1
Y
1
D
SER
166
D
SER
3
1
Y
1
D
SER
167
D
SER
4
1
Y
1
D
HIS
168
D
HIS
5
1
Y
1
D
HIS
169
D
HIS
6
1
Y
1
D
HIS
170
D
HIS
7
1
Y
1
D
HIS
171
D
HIS
8
1
Y
1
D
HIS
172
D
HIS
9
1
Y
1
D
HIS
173
D
HIS
10
1
Y
1
D
SER
174
D
SER
11
1
Y
1
D
SER
175
D
SER
12
1
Y
1
D
GLY
176
D
GLY
13
1
Y
1
D
LEU
177
D
LEU
14
1
Y
1
D
VAL
178
D
VAL
15
1
Y
1
D
PRO
179
D
PRO
16
1
Y
1
D
ARG
180
D
ARG
17
1
Y
1
D
GLY
181
D
GLY
18
1
Y
1
D
SER
182
D
SER
19
1
Y
1
D
HIS
183
D
HIS
20
1
Y
1
D
MET
184
D
MET
21
1
Y
1
D
ALA
185
D
ALA
22
1
Y
1
D
SER
186
D
SER
23
1
Y
1
D
ALA
187
D
ALA
24
1
Y
1
D
PRO
188
D
PRO
25
1
Y
1
D
ALA
189
D
ALA
26
1
Y
1
D
LEU
190
D
LEU
27
1
Y
1
D
ILE
208
D
ILE
45
1
Y
1
D
SER
209
D
SER
46
1
Y
1
D
ASN
280
D
ASN
117
1
Y
1
D
ASP
281
D
ASP
118
1
Y
1
D
THR
282
D
THR
119
1
Y
1
D
SER
333
D
SER
170
1
Y
1
D
ASP
334
D
ASP
171
1
Y
1
A
TYR
447
0.064
SIDE CHAIN
1
A
GLU
238
-115.61
-88.91
1
A
ARG
239
81.30
-5.63
1
A
ASP
292
63.23
-160.69
1
A
LYS
293
-45.72
-73.62
1
A
CYS
354
-53.42
99.16
1
B
ALA
189
174.63
127.56
1
B
GLU
238
-71.30
-87.13
1
B
ARG
239
88.19
-6.55
1
B
ASP
292
55.20
-148.37
1
B
LYS
336
-153.28
-20.53
1
B
GLU
337
-143.40
-31.03
1
B
SER
443
179.86
171.10
1
C
LYS
205
-96.23
35.97
1
C
GLU
238
-102.28
-81.15
1
C
ARG
239
70.49
-1.22
1
C
ASN
280
-20.33
-56.11
1
C
SER
285
-54.61
-5.14
1
C
ASP
292
58.07
-166.94
1
C
MET
382
-71.40
23.65
1
C
VAL
383
-158.93
-84.24
1
C
ASP
414
-140.33
37.91
1
D
LYS
192
-90.02
-67.48
1
D
SER
212
-176.83
148.68
1
D
LYS
214
176.00
131.13
1
D
GLU
237
-101.16
-109.32
1
D
ASP
292
61.65
-143.22
1
D
LYS
293
-87.63
-78.57
1
D
LYS
336
70.43
-54.84
1
D
ASP
394
-88.30
33.17
1
D
ILE
437
-55.72
-7.52
protein_rep.param
protein.top
water_rep.param
water.top
ion.param
ion.top
ligand2.param
ligand2.top
46.8
-3.98
6.40
5.57
3.01
14.02
0.97
0.270
0.004
0.212
0.212
2.30
48.15
4573
45278
10.1
83.8
RANDOM
1458641.52
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
3VQW
FLAT MODEL
48.6936
0.38657
0.38
0.30
5.00
0.47
0.40
2.30
48.15
164
8544
144
0
8236
0.007
1.5
23.2
0.87
1.38
1.50
2.36
2.00
1.97
2.00
3.01
2.50
0.356
0.015
0.314
2.44
587
5595
6
9.5
68.7
24.7
2.3
50
3VQX
45278
0.037
1
1.6
83.9
2.3
2.34
0.219
1
64.3
data collection
HKL-2000
phasing
MOLREP
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in triclinic crystal form
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
3
N
N
4
N
N
3
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
THR
191
A
THR
28
HELX_P
A
LEU
202
A
LEU
39
1
1
12
A
PRO
215
A
PRO
52
HELX_P
A
GLU
238
A
GLU
75
1
2
24
A
ASN
241
A
ASN
78
HELX_P
A
ARG
257
A
ARG
94
1
3
17
A
LEU
270
A
LEU
107
HELX_P
A
MET
276
A
MET
113
1
4
7
A
LEU
301
A
LEU
138
HELX_P
A
ASP
313
A
ASP
150
1
5
13
A
THR
355
A
THR
192
HELX_P
A
LEU
370
A
LEU
207
1
6
16
A
ILE
405
A
ILE
242
HELX_P
A
GLY
412
A
GLY
249
5
7
8
A
LEU
424
A
LEU
261
HELX_P
A
HIS
432
A
HIS
269
1
8
9
A
ASN
436
A
ASN
273
HELX_P
A
ALA
440
A
ALA
277
5
9
5
B
THR
191
B
THR
28
HELX_P
B
LEU
202
B
LEU
39
1
10
12
B
PRO
215
B
PRO
52
HELX_P
B
GLU
237
B
GLU
74
1
11
23
B
ASN
241
B
ASN
78
HELX_P
B
ARG
257
B
ARG
94
1
12
17
B
LEU
270
B
LEU
107
HELX_P
B
MET
276
B
MET
113
1
13
7
B
LEU
301
B
LEU
138
HELX_P
B
ASP
313
B
ASP
150
1
14
13
B
THR
355
B
THR
192
HELX_P
B
GLY
371
B
GLY
208
1
15
17
B
ILE
405
B
ILE
242
HELX_P
B
GLY
412
B
GLY
249
5
16
8
B
LEU
424
B
LEU
261
HELX_P
B
ASP
433
B
ASP
270
1
17
10
B
ASN
436
B
ASN
273
HELX_P
B
ALA
440
B
ALA
277
5
18
5
C
THR
191
C
THR
28
HELX_P
C
LEU
202
C
LEU
39
1
19
12
C
PRO
215
C
PRO
52
HELX_P
C
GLU
238
C
GLU
75
1
20
24
C
ASN
241
C
ASN
78
HELX_P
C
ASP
256
C
ASP
93
1
21
16
C
LEU
270
C
LEU
107
HELX_P
C
MET
276
C
MET
113
1
22
7
C
LEU
301
C
LEU
138
HELX_P
C
ASP
313
C
ASP
150
1
23
13
C
THR
355
C
THR
192
HELX_P
C
GLY
371
C
GLY
208
1
24
17
C
ILE
405
C
ILE
242
HELX_P
C
GLY
412
C
GLY
249
5
25
8
C
LEU
424
C
LEU
261
HELX_P
C
ASP
433
C
ASP
270
1
26
10
C
ASN
436
C
ASN
273
HELX_P
C
ALA
441
C
ALA
278
5
27
6
D
LYS
192
D
LYS
29
HELX_P
D
LEU
202
D
LEU
39
1
28
11
D
PRO
215
D
PRO
52
HELX_P
D
GLU
237
D
GLU
74
1
29
23
D
ASN
241
D
ASN
78
HELX_P
D
ARG
257
D
ARG
94
1
30
17
D
LEU
270
D
LEU
107
HELX_P
D
MET
276
D
MET
113
1
31
7
D
LEU
284
D
LEU
121
HELX_P
D
ILE
288
D
ILE
125
5
32
5
D
LEU
301
D
LEU
138
HELX_P
D
ASP
313
D
ASP
150
1
33
13
D
THR
355
D
THR
192
HELX_P
D
GLY
371
D
GLY
208
1
34
17
D
PRO
406
D
PRO
243
HELX_P
D
TRP
411
D
TRP
248
1
35
6
D
LEU
424
D
LEU
261
HELX_P
D
HIS
432
D
HIS
269
1
36
9
D
ASN
436
D
ASN
273
HELX_P
D
ALA
440
D
ALA
277
5
37
5
LIGASE
Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, aminoacyl-tRNA synthetase, pyrrolysyl-tRNA synthetase, AMP, BocLys-AMP, LIGASE
A
ASP
318
A
ASP
155
1
A
PRO
319
A
PRO
156
-0.06
A
GLY
403
A
GLY
240
1
A
PRO
404
A
PRO
241
0.18
B
ASP
318
B
ASP
155
1
B
PRO
319
B
PRO
156
-0.01
B
GLY
403
B
GLY
240
1
B
PRO
404
B
PRO
241
0.07
C
ASP
318
C
ASP
155
1
C
PRO
319
C
PRO
156
-0.10
C
GLY
403
C
GLY
240
1
C
PRO
404
C
PRO
241
-0.13
D
ASP
318
D
ASP
155
1
D
PRO
319
D
PRO
156
0.02
D
GLY
403
D
GLY
240
1
D
PRO
404
D
PRO
241
0.07
3VQX
PDB
1
3VQX
164
454
3VQX
164
454
3VQX
A
1
1
291
164
454
3VQX
164
454
3VQX
B
1
1
291
164
454
3VQX
164
454
3VQX
C
1
1
291
164
454
3VQX
164
454
3VQX
D
1
1
291
7
3
2
7
3
2
7
3
2
7
3
2
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
260
A
LEU
97
A
ILE
262
A
ILE
99
A
ILE
320
A
ILE
157
A
TYR
329
A
TYR
166
A
GLU
341
A
GLU
178
A
MET
350
A
MET
187
A
TRP
417
A
TRP
254
A
GLY
423
A
GLY
260
A
LEU
395
A
LEU
232
A
VAL
402
A
VAL
239
A
GLY
385
A
GLY
222
A
HIS
392
A
HIS
229
A
LYS
375
A
LYS
212
A
CYS
381
A
CYS
218
A
LEU
267
A
LEU
104
A
PRO
269
A
PRO
106
A
PHE
295
A
PHE
132
A
LEU
297
A
LEU
134
A
ARG
290
A
ARG
127
A
VAL
291
A
VAL
128
A
TYR
446
A
TYR
283
A
TYR
447
A
TYR
284
A
ILE
450
A
ILE
287
A
SER
451
A
SER
288
B
LEU
260
B
LEU
97
B
ILE
262
B
ILE
99
B
ILE
320
B
ILE
157
B
TYR
329
B
TYR
166
B
GLU
341
B
GLU
178
B
MET
350
B
MET
187
B
TRP
417
B
TRP
254
B
GLY
423
B
GLY
260
B
LEU
395
B
LEU
232
B
VAL
402
B
VAL
239
B
LEU
388
B
LEU
225
B
HIS
392
B
HIS
229
B
LYS
375
B
LYS
212
B
VAL
377
B
VAL
214
B
LEU
267
B
LEU
104
B
PRO
269
B
PRO
106
B
PHE
295
B
PHE
132
B
LEU
297
B
LEU
134
B
ARG
290
B
ARG
127
B
VAL
291
B
VAL
128
B
TYR
446
B
TYR
283
B
TYR
447
B
TYR
284
B
ILE
450
B
ILE
287
B
SER
451
B
SER
288
C
LEU
260
C
LEU
97
C
ILE
262
C
ILE
99
C
ILE
320
C
ILE
157
C
TYR
329
C
TYR
166
C
GLU
341
C
GLU
178
C
MET
350
C
MET
187
C
TRP
417
C
TRP
254
C
GLY
423
C
GLY
260
C
LEU
395
C
LEU
232
C
VAL
402
C
VAL
239
C
ASP
386
C
ASP
223
C
HIS
392
C
HIS
229
C
LYS
375
C
LYS
212
C
ILE
376
C
ILE
213
C
LEU
267
C
LEU
104
C
PRO
269
C
PRO
106
C
PHE
295
C
PHE
132
C
LEU
297
C
LEU
134
C
ARG
290
C
ARG
127
C
VAL
291
C
VAL
128
C
TYR
446
C
TYR
283
C
TYR
447
C
TYR
284
C
ILE
450
C
ILE
287
C
SER
451
C
SER
288
D
LEU
260
D
LEU
97
D
ILE
262
D
ILE
99
D
ILE
320
D
ILE
157
D
TYR
329
D
TYR
166
D
GLU
341
D
GLU
178
D
MET
350
D
MET
187
D
TRP
417
D
TRP
254
D
GLY
423
D
GLY
260
D
LEU
395
D
LEU
232
D
VAL
402
D
VAL
239
D
ASP
386
D
ASP
223
D
HIS
392
D
HIS
229
D
LYS
375
D
LYS
212
D
ASP
379
D
ASP
216
D
LEU
267
D
LEU
104
D
PRO
269
D
PRO
106
D
PHE
295
D
PHE
132
D
LEU
297
D
LEU
134
D
PHE
289
D
PHE
126
D
VAL
291
D
VAL
128
D
TYR
446
D
TYR
283
D
TYR
447
D
TYR
284
D
ILE
450
D
ILE
287
D
SER
451
D
SER
288
BINDING SITE FOR RESIDUE AMP A 501
A
AMP
501
Software
11
BINDING SITE FOR RESIDUE PO4 A 502
A
PO4
502
Software
3
BINDING SITE FOR RESIDUE AMP B 501
B
AMP
501
Software
12
BINDING SITE FOR RESIDUE PO4 B 502
B
PO4
502
Software
3
BINDING SITE FOR RESIDUE BLK C 601
C
BLK
601
Software
14
BINDING SITE FOR RESIDUE PO4 C 602
C
PO4
602
Software
4
BINDING SITE FOR RESIDUE BLK D 501
D
BLK
501
Software
19
BINDING SITE FOR RESIDUE PO4 D 502
D
PO4
502
Software
4
A
ARG
330
A
ARG
167
11
1_555
A
GLU
332
A
GLU
169
11
1_555
A
GLU
337
A
GLU
174
11
1_555
A
HIS
338
A
HIS
175
11
1_555
A
LEU
339
A
LEU
176
11
1_555
A
MET
344
A
MET
181
11
1_555
A
GLU
396
A
GLU
233
11
1_555
A
LEU
397
A
LEU
234
11
1_555
A
SER
399
A
SER
236
11
1_555
A
GLY
423
A
GLY
260
11
1_555
A
ARG
426
A
ARG
263
11
1_555
A
ARG
310
A
ARG
147
3
1_555
A
LYS
311
A
LYS
148
3
1_555
A
ARG
314
A
ARG
151
3
1_555
B
ARG
330
B
ARG
167
12
1_555
B
GLU
332
B
GLU
169
12
1_555
B
GLU
337
B
GLU
174
12
1_555
B
HIS
338
B
HIS
175
12
1_555
B
LEU
339
B
LEU
176
12
1_555
B
PHE
342
B
PHE
179
12
1_555
B
MET
344
B
MET
181
12
1_555
B
GLU
396
B
GLU
233
12
1_555
B
LEU
397
B
LEU
234
12
1_555
B
SER
399
B
SER
236
12
1_555
B
GLY
423
B
GLY
260
12
1_555
B
ARG
426
B
ARG
263
12
1_555
B
ARG
310
B
ARG
147
3
1_555
B
LYS
311
B
LYS
148
3
1_555
B
ARG
314
B
ARG
151
3
1_555
C
ALA
302
C
ALA
139
14
1_555
C
TYR
306
C
TYR
143
14
1_555
C
ARG
330
C
ARG
167
14
1_555
C
HIS
338
C
HIS
175
14
1_555
C
LEU
339
C
LEU
176
14
1_555
C
MET
344
C
MET
181
14
1_555
C
ASN
346
C
ASN
183
14
1_555
C
GLU
396
C
GLU
233
14
1_555
C
LEU
397
C
LEU
234
14
1_555
C
SER
399
C
SER
236
14
1_555
C
VAL
401
C
VAL
238
14
1_555
C
TRP
417
C
TRP
254
14
1_555
C
GLY
423
C
GLY
260
14
1_555
C
ARG
426
C
ARG
263
14
1_555
C
ARG
310
C
ARG
147
4
1_555
C
LYS
311
C
LYS
148
4
1_555
C
ARG
314
C
ARG
151
4
1_555
D
ASN
453
D
ASN
290
4
1_555
D
ALA
302
D
ALA
139
19
1_555
D
TYR
306
D
TYR
143
19
1_555
D
ARG
330
D
ARG
167
19
1_555
D
GLU
332
D
GLU
169
19
1_555
D
HIS
338
D
HIS
175
19
1_555
D
LEU
339
D
LEU
176
19
1_555
D
PHE
342
D
PHE
179
19
1_555
D
MET
344
D
MET
181
19
1_555
D
ASN
346
D
ASN
183
19
1_555
D
CYS
348
D
CYS
185
19
1_555
D
GLU
396
D
GLU
233
19
1_555
D
LEU
397
D
LEU
234
19
1_555
D
SER
399
D
SER
236
19
1_555
D
TRP
417
D
TRP
254
19
1_555
D
GLY
421
D
GLY
258
19
1_555
D
GLY
423
D
GLY
260
19
1_555
D
ARG
426
D
ARG
263
19
1_555
D
HOH
601
P
HOH
19
1_555
D
HOH
608
P
HOH
19
1_555
C
ASN
453
C
ASN
290
4
1_555
D
ARG
310
D
ARG
147
4
1_555
D
LYS
311
D
LYS
148
4
1_555
D
ARG
314
D
ARG
151
4
1_555
1
P 1