0.014919
0.008613
0.000000
0.000000
0.017227
0.000000
0.000000
0.000000
0.021371
0.00000
0.00000
0.00000
Wachino, J.
Yamaguchi, Y.
Mori, S.
Arakawa, Y.
Shibayama, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
3
90.00
90.00
120.00
67.029
67.029
46.792
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C2 H4 O2 S
92.117
SULFANYLACETIC ACID
MERCAPTOACETIC ACID
non-polymer
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
O
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
S
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
S
N
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
NA
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
O
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
R
C
N
319
N
O
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
N
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
N
369
N
O
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
Y
256
N
doub
Y
257
N
sing
Y
258
N
sing
N
259
N
sing
Y
260
N
doub
N
261
N
sing
Y
262
N
doub
N
263
N
sing
Y
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
doub
Y
330
N
sing
Y
331
N
sing
N
332
N
sing
Y
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
Y
353
N
doub
Y
354
N
sing
Y
355
N
sing
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
US
Antimicrob.Agents Chemother.
AMACCQ
0788
0066-4804
57
101
109
10.1128/AAC.01264-12
23070156
Structural Insights into the Subclass B3 Metallo-beta-Lactamase SMB-1 and the Mode of Inhibition by the Common Metallo- -Lactamase Inhibitor Mercaptoacetate
2013
10.2210/pdb3vqz/pdb
pdb_00003vqz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2012-02-19
ADSC QUANTUM 210
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.00000
1.0
AR-NW12A
Photon Factory
1.00000
SYNCHROTRON
PHOTON FACTORY BEAMLINE AR-NW12A
27754.043
Metallo-beta-lactamase
3.5.2.6
UNP residues 19-280
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
92.117
SULFANYLACETIC ACID
1
syn
non-polymer
18.015
water
146
nat
water
no
no
QDRDWSSPQQPFTIYGNTHYVGTGGISAVLLSSPQGHILVDGTTEKGAQVVAANIRAMGFKLSDVKYILSTHSHEDHAGG
ISAMQKLTGATVLAGAANVDTLRTGVSPKSDPQFGSLSNFPGSAKVRAVADGELVKLGPLAVKAHATPGHTEGGITWTWQ
SCEQGKCKDVVFADSLTAVSADSYRFSDHPEVVASLRGSFEAVEKLSCDIAIAAHPEVNDMWTRQQRAAKEGNSAYVDNG
ACRAIAAAGRKRLETRLASEKR
QDRDWSSPQQPFTIYGNTHYVGTGGISAVLLSSPQGHILVDGTTEKGAQVVAANIRAMGFKLSDVKYILSTHSHEDHAGG
ISAMQKLTGATVLAGAANVDTLRTGVSPKSDPQFGSLSNFPGSAKVRAVADGELVKLGPLAVKAHATPGHTEGGITWTWQ
SCEQGKCKDVVFADSLTAVSADSYRFSDHPEVVASLRGSFEAVEKLSCDIAIAAHPEVNDMWTRQQRAAKEGNSAYVDNG
ACRAIAAAGRKRLETRLASEKR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
SMB-1
615
Serratia marcescens
562
Escherichia coli
plasmid
1
2.19
43.75
VAPOR DIFFUSION, HANGING DROP
6.0
26% PEG 6000, 1.0M Lithium Chloride, 0.1M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
atom_site
chem_comp_atom
chem_comp_bond
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
Atomic model
Data collection
Derived calculations
1
0
2013-02-13
1
1
2023-11-08
2
0
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_atom_site.auth_atom_id
_atom_site.label_atom_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_struct_conn.ptnr2_label_atom_id
PDBJ
Y
PDBJ
2012-04-02
REL
REL
ZN
ZINC ION
NA
SODIUM ION
MCR
SULFANYLACETIC ACID
HOH
water
3VPE
PDB ENTRY 3VPE
PDB
experimental model
ZN
301
2
ZN
ZN
301
A
ZN
302
2
ZN
ZN
302
A
NA
303
3
NA
NA
303
A
NA
304
3
NA
NA
304
A
MCR
305
4
MCR
MCR
305
A
HOH
401
5
HOH
HOH
401
A
HOH
402
5
HOH
HOH
402
A
HOH
403
5
HOH
HOH
403
A
HOH
404
5
HOH
HOH
404
A
HOH
405
5
HOH
HOH
405
A
HOH
406
5
HOH
HOH
406
A
HOH
407
5
HOH
HOH
407
A
HOH
408
5
HOH
HOH
408
A
HOH
409
5
HOH
HOH
409
A
HOH
410
5
HOH
HOH
410
A
HOH
411
5
HOH
HOH
411
A
HOH
412
5
HOH
HOH
412
A
HOH
413
5
HOH
HOH
413
A
HOH
414
5
HOH
HOH
414
A
HOH
415
5
HOH
HOH
415
A
HOH
416
5
HOH
HOH
416
A
HOH
417
5
HOH
HOH
417
A
HOH
418
5
HOH
HOH
418
A
HOH
419
5
HOH
HOH
419
A
HOH
420
5
HOH
HOH
420
A
HOH
421
5
HOH
HOH
421
A
HOH
422
5
HOH
HOH
422
A
HOH
423
5
HOH
HOH
423
A
HOH
424
5
HOH
HOH
424
A
HOH
425
5
HOH
HOH
425
A
HOH
426
5
HOH
HOH
426
A
HOH
427
5
HOH
HOH
427
A
HOH
428
5
HOH
HOH
428
A
HOH
429
5
HOH
HOH
429
A
HOH
430
5
HOH
HOH
430
A
HOH
431
5
HOH
HOH
431
A
HOH
432
5
HOH
HOH
432
A
HOH
433
5
HOH
HOH
433
A
HOH
434
5
HOH
HOH
434
A
HOH
435
5
HOH
HOH
435
A
HOH
436
5
HOH
HOH
436
A
HOH
437
5
HOH
HOH
437
A
HOH
438
5
HOH
HOH
438
A
HOH
439
5
HOH
HOH
439
A
HOH
440
5
HOH
HOH
440
A
HOH
441
5
HOH
HOH
441
A
HOH
442
5
HOH
HOH
442
A
HOH
443
5
HOH
HOH
443
A
HOH
444
5
HOH
HOH
444
A
HOH
445
5
HOH
HOH
445
A
HOH
446
5
HOH
HOH
446
A
HOH
447
5
HOH
HOH
447
A
HOH
448
5
HOH
HOH
448
A
HOH
449
5
HOH
HOH
449
A
HOH
450
5
HOH
HOH
450
A
HOH
451
5
HOH
HOH
451
A
HOH
452
5
HOH
HOH
452
A
HOH
453
5
HOH
HOH
453
A
HOH
454
5
HOH
HOH
454
A
HOH
455
5
HOH
HOH
455
A
HOH
456
5
HOH
HOH
456
A
HOH
457
5
HOH
HOH
457
A
HOH
458
5
HOH
HOH
458
A
HOH
459
5
HOH
HOH
459
A
HOH
460
5
HOH
HOH
460
A
HOH
461
5
HOH
HOH
461
A
HOH
462
5
HOH
HOH
462
A
HOH
463
5
HOH
HOH
463
A
HOH
464
5
HOH
HOH
464
A
HOH
465
5
HOH
HOH
465
A
HOH
466
5
HOH
HOH
466
A
HOH
467
5
HOH
HOH
467
A
HOH
468
5
HOH
HOH
468
A
HOH
469
5
HOH
HOH
469
A
HOH
470
5
HOH
HOH
470
A
HOH
471
5
HOH
HOH
471
A
HOH
472
5
HOH
HOH
472
A
HOH
473
5
HOH
HOH
473
A
HOH
474
5
HOH
HOH
474
A
HOH
475
5
HOH
HOH
475
A
HOH
476
5
HOH
HOH
476
A
HOH
477
5
HOH
HOH
477
A
HOH
478
5
HOH
HOH
478
A
HOH
479
5
HOH
HOH
479
A
HOH
480
5
HOH
HOH
480
A
HOH
481
5
HOH
HOH
481
A
HOH
482
5
HOH
HOH
482
A
HOH
483
5
HOH
HOH
483
A
HOH
484
5
HOH
HOH
484
A
HOH
485
5
HOH
HOH
485
A
HOH
486
5
HOH
HOH
486
A
HOH
487
5
HOH
HOH
487
A
HOH
488
5
HOH
HOH
488
A
HOH
489
5
HOH
HOH
489
A
HOH
490
5
HOH
HOH
490
A
HOH
491
5
HOH
HOH
491
A
HOH
492
5
HOH
HOH
492
A
HOH
493
5
HOH
HOH
493
A
HOH
494
5
HOH
HOH
494
A
HOH
495
5
HOH
HOH
495
A
HOH
496
5
HOH
HOH
496
A
HOH
497
5
HOH
HOH
497
A
HOH
498
5
HOH
HOH
498
A
HOH
499
5
HOH
HOH
499
A
HOH
500
5
HOH
HOH
500
A
HOH
501
5
HOH
HOH
501
A
HOH
502
5
HOH
HOH
502
A
HOH
503
5
HOH
HOH
503
A
HOH
504
5
HOH
HOH
504
A
HOH
505
5
HOH
HOH
505
A
HOH
506
5
HOH
HOH
506
A
HOH
507
5
HOH
HOH
507
A
HOH
508
5
HOH
HOH
508
A
HOH
509
5
HOH
HOH
509
A
HOH
510
5
HOH
HOH
510
A
HOH
511
5
HOH
HOH
511
A
HOH
512
5
HOH
HOH
512
A
HOH
513
5
HOH
HOH
513
A
HOH
514
5
HOH
HOH
514
A
HOH
515
5
HOH
HOH
515
A
HOH
516
5
HOH
HOH
516
A
HOH
517
5
HOH
HOH
517
A
HOH
518
5
HOH
HOH
518
A
HOH
519
5
HOH
HOH
519
A
HOH
520
5
HOH
HOH
520
A
HOH
521
5
HOH
HOH
521
A
HOH
522
5
HOH
HOH
522
A
HOH
523
5
HOH
HOH
523
A
HOH
524
5
HOH
HOH
524
A
HOH
525
5
HOH
HOH
525
A
HOH
526
5
HOH
HOH
526
A
HOH
527
5
HOH
HOH
527
A
HOH
528
5
HOH
HOH
528
A
HOH
529
5
HOH
HOH
529
A
HOH
530
5
HOH
HOH
530
A
HOH
531
5
HOH
HOH
531
A
HOH
532
5
HOH
HOH
532
A
HOH
533
5
HOH
HOH
533
A
HOH
534
5
HOH
HOH
534
A
HOH
535
5
HOH
HOH
535
A
HOH
536
5
HOH
HOH
536
A
HOH
537
5
HOH
HOH
537
A
HOH
538
5
HOH
HOH
538
A
HOH
539
5
HOH
HOH
539
A
HOH
540
5
HOH
HOH
540
A
HOH
541
5
HOH
HOH
541
A
HOH
542
5
HOH
HOH
542
A
HOH
543
5
HOH
HOH
543
A
HOH
544
5
HOH
HOH
544
A
HOH
545
5
HOH
HOH
545
A
HOH
546
5
HOH
HOH
546
A
n
1
1
A
n
2
2
A
ARG
3
n
3
ARG
3
A
ASP
4
n
4
ASP
4
A
TRP
5
n
5
TRP
5
A
SER
6
n
6
SER
6
A
SER
7
n
7
SER
7
A
PRO
8
n
8
PRO
8
A
GLN
9
n
9
GLN
9
A
GLN
10
n
10
GLN
10
A
PRO
11
n
11
PRO
11
A
PHE
12
n
12
PHE
12
A
THR
13
n
13
THR
13
A
ILE
14
n
14
ILE
14
A
TYR
15
n
15
TYR
15
A
GLY
16
n
16
GLY
16
A
ASN
17
n
17
ASN
17
A
THR
18
n
18
THR
18
A
HIS
19
n
19
HIS
19
A
TYR
20
n
20
TYR
20
A
VAL
21
n
21
VAL
21
A
GLY
22
n
22
GLY
22
A
THR
23
n
23
THR
23
A
GLY
24
n
24
GLY
24
A
GLY
25
n
25
GLY
25
A
ILE
26
n
26
ILE
26
A
SER
27
n
27
SER
27
A
ALA
28
n
28
ALA
28
A
VAL
29
n
29
VAL
29
A
LEU
30
n
30
LEU
30
A
LEU
31
n
31
LEU
31
A
SER
32
n
32
SER
32
A
SER
33
n
33
SER
33
A
PRO
34
n
34
PRO
34
A
GLN
35
n
35
GLN
35
A
GLY
36
n
36
GLY
36
A
HIS
37
n
37
HIS
37
A
ILE
38
n
38
ILE
38
A
LEU
39
n
39
LEU
39
A
VAL
40
n
40
VAL
40
A
ASP
41
n
41
ASP
41
A
GLY
42
n
42
GLY
42
A
THR
43
n
43
THR
43
A
THR
44
n
44
THR
44
A
GLU
45
n
45
GLU
45
A
LYS
46
n
46
LYS
46
A
GLY
47
n
47
GLY
47
A
ALA
48
n
48
ALA
48
A
GLN
49
n
49
GLN
49
A
VAL
50
n
50
VAL
50
A
VAL
51
n
51
VAL
51
A
ALA
52
n
52
ALA
52
A
ALA
53
n
53
ALA
53
A
ASN
54
n
54
ASN
54
A
ILE
55
n
55
ILE
55
A
ARG
56
n
56
ARG
56
A
ALA
57
n
57
ALA
57
A
MET
58
n
58
MET
58
A
GLY
59
n
59
GLY
59
A
PHE
60
n
60
PHE
60
A
LYS
61
n
61
LYS
61
A
LEU
62
n
62
LEU
62
A
SER
63
n
63
SER
63
A
ASP
64
n
64
ASP
64
A
VAL
65
n
65
VAL
65
A
LYS
66
n
66
LYS
66
A
TYR
67
n
67
TYR
67
A
ILE
68
n
68
ILE
68
A
LEU
69
n
69
LEU
69
A
SER
70
n
70
SER
70
A
THR
71
n
71
THR
71
A
HIS
72
n
72
HIS
72
A
SER
73
n
73
SER
73
A
HIS
74
n
74
HIS
74
A
GLU
75
n
75
GLU
75
A
ASP
76
n
76
ASP
76
A
HIS
77
n
77
HIS
77
A
ALA
78
n
78
ALA
78
A
GLY
79
n
79
GLY
79
A
GLY
80
n
80
GLY
80
A
ILE
81
n
81
ILE
81
A
SER
82
n
82
SER
82
A
ALA
83
n
83
ALA
83
A
MET
84
n
84
MET
84
A
GLN
85
n
85
GLN
85
A
LYS
86
n
86
LYS
86
A
LEU
87
n
87
LEU
87
A
THR
88
n
88
THR
88
A
GLY
89
n
89
GLY
89
A
ALA
90
n
90
ALA
90
A
THR
91
n
91
THR
91
A
VAL
92
n
92
VAL
92
A
LEU
93
n
93
LEU
93
A
ALA
94
n
94
ALA
94
A
GLY
95
n
95
GLY
95
A
ALA
96
n
96
ALA
96
A
ALA
97
n
97
ALA
97
A
ASN
98
n
98
ASN
98
A
VAL
99
n
99
VAL
99
A
ASP
100
n
100
ASP
100
A
THR
101
n
101
THR
101
A
LEU
102
n
102
LEU
102
A
ARG
103
n
103
ARG
103
A
THR
104
n
104
THR
104
A
GLY
105
n
105
GLY
105
A
VAL
106
n
106
VAL
106
A
SER
107
n
107
SER
107
A
PRO
108
n
108
PRO
108
A
LYS
109
n
109
LYS
109
A
SER
110
n
110
SER
110
A
ASP
111
n
111
ASP
111
A
PRO
112
n
112
PRO
112
A
GLN
113
n
113
GLN
113
A
PHE
114
n
114
PHE
114
A
GLY
115
n
115
GLY
115
A
n
116
116
A
n
117
117
A
SER
118
n
118
SER
118
A
ASN
119
n
119
ASN
119
A
PHE
120
n
120
PHE
120
A
PRO
121
n
121
PRO
121
A
GLY
122
n
122
GLY
122
A
SER
123
n
123
SER
123
A
ALA
124
n
124
ALA
124
A
LYS
125
n
125
LYS
125
A
VAL
126
n
126
VAL
126
A
ARG
127
n
127
ARG
127
A
ALA
128
n
128
ALA
128
A
VAL
129
n
129
VAL
129
A
ALA
130
n
130
ALA
130
A
ASP
131
n
131
ASP
131
A
GLY
132
n
132
GLY
132
A
GLU
133
n
133
GLU
133
A
LEU
134
n
134
LEU
134
A
VAL
135
n
135
VAL
135
A
LYS
136
n
136
LYS
136
A
LEU
137
n
137
LEU
137
A
GLY
138
n
138
GLY
138
A
PRO
139
n
139
PRO
139
A
LEU
140
n
140
LEU
140
A
ALA
141
n
141
ALA
141
A
VAL
142
n
142
VAL
142
A
LYS
143
n
143
LYS
143
A
ALA
144
n
144
ALA
144
A
HIS
145
n
145
HIS
145
A
ALA
146
n
146
ALA
146
A
THR
147
n
147
THR
147
A
PRO
148
n
148
PRO
148
A
GLY
149
n
149
GLY
149
A
HIS
150
n
150
HIS
150
A
THR
151
n
151
THR
151
A
GLU
152
n
152
GLU
152
A
GLY
153
n
153
GLY
153
A
GLY
154
n
154
GLY
154
A
ILE
155
n
155
ILE
155
A
THR
156
n
156
THR
156
A
TRP
157
n
157
TRP
157
A
THR
158
n
158
THR
158
A
TRP
159
n
159
TRP
159
A
GLN
160
n
160
GLN
160
A
SER
161
n
161
SER
161
A
CYS
162
n
162
CYS
162
A
GLU
163
n
163
GLU
163
A
GLN
164
n
164
GLN
164
A
GLY
165
n
165
GLY
165
A
LYS
166
n
166
LYS
166
A
CYS
167
n
167
CYS
167
A
LYS
168
n
168
LYS
168
A
ASP
169
n
169
ASP
169
A
VAL
170
n
170
VAL
170
A
VAL
171
n
171
VAL
171
A
PHE
172
n
172
PHE
172
A
ALA
173
n
173
ALA
173
A
ASP
174
n
174
ASP
174
A
SER
175
n
175
SER
175
A
LEU
176
n
176
LEU
176
A
THR
177
n
177
THR
177
A
ALA
178
n
178
ALA
178
A
VAL
179
n
179
VAL
179
A
SER
180
n
180
SER
180
A
ALA
181
n
181
ALA
181
A
ASP
182
n
182
ASP
182
A
SER
183
n
183
SER
183
A
TYR
184
n
184
TYR
184
A
ARG
185
n
185
ARG
185
A
PHE
186
n
186
PHE
186
A
SER
187
n
187
SER
187
A
ASP
188
n
188
ASP
188
A
HIS
189
n
189
HIS
189
A
PRO
190
n
190
PRO
190
A
GLU
191
n
191
GLU
191
A
VAL
192
n
192
VAL
192
A
VAL
193
n
193
VAL
193
A
ALA
194
n
194
ALA
194
A
SER
195
n
195
SER
195
A
LEU
196
n
196
LEU
196
A
ARG
197
n
197
ARG
197
A
GLY
198
n
198
GLY
198
A
SER
199
n
199
SER
199
A
PHE
200
n
200
PHE
200
A
GLU
201
n
201
GLU
201
A
ALA
202
n
202
ALA
202
A
VAL
203
n
203
VAL
203
A
GLU
204
n
204
GLU
204
A
LYS
205
n
205
LYS
205
A
LEU
206
n
206
LEU
206
A
SER
207
n
207
SER
207
A
CYS
208
n
208
CYS
208
A
ASP
209
n
209
ASP
209
A
ILE
210
n
210
ILE
210
A
ALA
211
n
211
ALA
211
A
ILE
212
n
212
ILE
212
A
ALA
213
n
213
ALA
213
A
ALA
214
n
214
ALA
214
A
HIS
215
n
215
HIS
215
A
PRO
216
n
216
PRO
216
A
GLU
217
n
217
GLU
217
A
VAL
218
n
218
VAL
218
A
ASN
219
n
219
ASN
219
A
ASP
220
n
220
ASP
220
A
MET
221
n
221
MET
221
A
TRP
222
n
222
TRP
222
A
THR
223
n
223
THR
223
A
ARG
224
n
224
ARG
224
A
GLN
225
n
225
GLN
225
A
GLN
226
n
226
GLN
226
A
ARG
227
n
227
ARG
227
A
ALA
228
n
228
ALA
228
A
ALA
229
n
229
ALA
229
A
LYS
230
n
230
LYS
230
A
GLU
231
n
231
GLU
231
A
GLY
232
n
232
GLY
232
A
ASN
233
n
233
ASN
233
A
SER
234
n
234
SER
234
A
ALA
235
n
235
ALA
235
A
TYR
236
n
236
TYR
236
A
VAL
237
n
237
VAL
237
A
ASP
238
n
238
ASP
238
A
ASN
239
n
239
ASN
239
A
GLY
240
n
240
GLY
240
A
ALA
241
n
241
ALA
241
A
CYS
242
n
242
CYS
242
A
ARG
243
n
243
ARG
243
A
ALA
244
n
244
ALA
244
A
ILE
245
n
245
ILE
245
A
ALA
246
n
246
ALA
246
A
ALA
247
n
247
ALA
247
A
ALA
248
n
248
ALA
248
A
GLY
249
n
249
GLY
249
A
ARG
250
n
250
ARG
250
A
LYS
251
n
251
LYS
251
A
ARG
252
n
252
ARG
252
A
LEU
253
n
253
LEU
253
A
GLU
254
n
254
GLU
254
A
THR
255
n
255
THR
255
A
ARG
256
n
256
ARG
256
A
LEU
257
n
257
LEU
257
A
ALA
258
n
258
ALA
258
A
SER
259
n
259
SER
259
A
GLU
260
n
260
GLU
260
A
LYS
261
n
261
LYS
261
A
n
262
262
A
author_and_software_defined_assembly
PISA
1
monomeric
A
GLN
9
A
O
GLN
9
1_555
A
NA
304
E
NA
NA
1_555
A
ASN
54
A
OD1
ASN
54
1_555
65.1
A
GLN
9
A
O
GLN
9
1_555
A
NA
304
E
NA
NA
1_555
A
HOH
498
G
O
HOH
1_555
82.1
A
ASN
54
A
OD1
ASN
54
1_555
A
NA
304
E
NA
NA
1_555
A
HOH
498
G
O
HOH
1_555
115.2
A
GLN
9
A
O
GLN
9
1_555
A
NA
304
E
NA
NA
1_555
A
HOH
529
G
O
HOH
1_555
163.9
A
ASN
54
A
OD1
ASN
54
1_555
A
NA
304
E
NA
NA
1_555
A
HOH
529
G
O
HOH
1_555
113.8
A
HOH
498
G
O
HOH
1_555
A
NA
304
E
NA
NA
1_555
A
HOH
529
G
O
HOH
1_555
111.4
A
SER
70
A
O
SER
70
1_555
A
NA
303
D
NA
NA
1_555
A
THR
71
A
O
THR
71
1_555
75.5
A
SER
70
A
O
SER
70
1_555
A
NA
303
D
NA
NA
1_555
A
GLY
153
A
O
GLY
153
1_555
156.2
A
THR
71
A
O
THR
71
1_555
A
NA
303
D
NA
NA
1_555
A
GLY
153
A
O
GLY
153
1_555
86.3
A
SER
70
A
O
SER
70
1_555
A
NA
303
D
NA
NA
1_555
A
HOH
505
G
O
HOH
1_555
93.0
A
THR
71
A
O
THR
71
1_555
A
NA
303
D
NA
NA
1_555
A
HOH
505
G
O
HOH
1_555
82.5
A
GLY
153
A
O
GLY
153
1_555
A
NA
303
D
NA
NA
1_555
A
HOH
505
G
O
HOH
1_555
99.7
A
HIS
72
A
NE2
HIS
72
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
74
A
ND1
HIS
74
1_555
95.2
A
HIS
72
A
NE2
HIS
72
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
150
A
NE2
HIS
150
1_555
97.7
A
HIS
74
A
ND1
HIS
74
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
150
A
NE2
HIS
150
1_555
98.9
A
HIS
72
A
NE2
HIS
72
1_555
A
ZN
301
B
ZN
ZN
1_555
A
MCR
305
F
S2
MCR
1_555
129.6
A
HIS
74
A
ND1
HIS
74
1_555
A
ZN
301
B
ZN
ZN
1_555
A
MCR
305
F
S2
MCR
1_555
117.3
A
HIS
150
A
NE2
HIS
150
1_555
A
ZN
301
B
ZN
ZN
1_555
A
MCR
305
F
S2
MCR
1_555
112.6
A
ASP
76
A
OD2
ASP
76
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
77
A
NE2
HIS
77
1_555
96.4
A
ASP
76
A
OD2
ASP
76
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
215
A
NE2
HIS
215
1_555
94.0
A
HIS
77
A
NE2
HIS
77
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
215
A
NE2
HIS
215
1_555
111.4
A
ASP
76
A
OD2
ASP
76
1_555
A
ZN
302
C
ZN
ZN
1_555
A
MCR
305
F
S2
MCR
1_555
101.7
A
HIS
77
A
NE2
HIS
77
1_555
A
ZN
302
C
ZN
ZN
1_555
A
MCR
305
F
S2
MCR
1_555
123.1
A
HIS
215
A
NE2
HIS
215
1_555
A
ZN
302
C
ZN
ZN
1_555
A
MCR
305
F
S2
MCR
1_555
120.3
A
ASP
76
A
OD2
ASP
76
1_555
A
ZN
302
C
ZN
ZN
1_555
A
MCR
305
F
O
MCR
1_555
169.9
A
HIS
77
A
NE2
HIS
77
1_555
A
ZN
302
C
ZN
ZN
1_555
A
MCR
305
F
O
MCR
1_555
92.9
A
HIS
215
A
NE2
HIS
215
1_555
A
ZN
302
C
ZN
ZN
1_555
A
MCR
305
F
O
MCR
1_555
86.1
A
MCR
305
F
S2
MCR
1_555
A
ZN
302
C
ZN
ZN
1_555
A
MCR
305
F
O
MCR
1_555
69.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
12
A
N
PHE
12
A
O
TYR
20
A
O
TYR
20
A
N
HIS
19
A
N
HIS
19
A
O
LEU
30
A
O
LEU
30
A
N
LEU
31
A
N
LEU
31
A
O
ILE
38
A
O
ILE
38
A
N
LEU
39
A
N
LEU
39
A
O
LEU
69
A
O
LEU
69
A
N
ILE
68
A
N
ILE
68
A
O
THR
91
A
O
THR
91
A
N
VAL
92
A
N
VAL
92
A
O
ARG
127
A
O
ARG
127
A
N
VAL
135
A
N
VAL
135
A
O
VAL
142
A
O
VAL
142
A
N
LYS
143
A
N
LYS
143
A
O
THR
158
A
O
THR
158
A
N
TRP
159
A
N
TRP
159
A
O
VAL
170
A
O
VAL
170
A
N
VAL
171
A
N
VAL
171
A
O
ILE
210
A
O
ILE
210
1
A
GLN
1
A
GLN
1
1
Y
1
A
ASP
2
A
ASP
2
1
Y
1
A
SER
116
A
SER
116
1
Y
1
A
LEU
117
A
LEU
117
1
Y
1
A
ARG
262
A
ARG
262
1
Y
1
A
TYR
15
-162.16
119.94
1
A
ASP
41
76.90
160.48
1
A
THR
43
57.86
-145.85
1
A
ASP
238
-169.01
103.49
27.940
-1.67
-0.84
0.00
-1.67
0.00
2.51
0.956
0.926
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.22379
0.16740
0.17010
2.20
29.02
570
11951
11367
4.8
99.96
5.251
0.137
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.304
0.213
0.80
0.80
1.20
PDB ENTRY 3VPE
MAXIMUM LIKELIHOOD
MASK
2.20
29.02
146
2062
9
0
1907
0.008
0.019
1950
1.178
1.937
2643
6.178
5.000
255
32.582
23.875
80
15.407
15.000
308
18.341
15.000
12
0.075
0.200
296
0.005
0.021
1479
0.294
0.164
2.257
40
873
20
100.00
2.2
50.0
3VQZ
11951
0
0
1
11.3
100
0.290
2.20
2.24
621
1
11.4
100.0
data collection
HKL-2000
phasing
AMoRE
refinement
REFMAC
5.6.0117
data reduction
HKL-2000
data scaling
SCALEPACK
Crystal structure of metallo-beta-lactamase, SMB-1, in a complex with mercaptoacetic acid
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
GLY
47
A
GLY
47
HELX_P
A
MET
58
A
MET
58
1
1
12
A
LYS
61
A
LYS
61
HELX_P
A
SER
63
A
SER
63
5
2
3
A
HIS
74
A
HIS
74
HELX_P
A
GLY
79
A
GLY
79
1
3
6
A
GLY
80
A
GLY
80
HELX_P
A
GLY
89
A
GLY
89
1
4
10
A
ASN
98
A
ASN
98
HELX_P
A
GLY
105
A
GLY
105
1
5
8
A
ARG
185
A
ARG
185
HELX_P
A
ASP
188
A
ASP
188
5
6
4
A
HIS
189
A
HIS
189
HELX_P
A
LYS
205
A
LYS
205
1
7
17
A
HIS
215
A
HIS
215
HELX_P
A
ASN
219
A
ASN
219
5
8
5
A
ASP
220
A
ASP
220
HELX_P
A
GLY
232
A
GLY
232
1
9
13
A
ASN
233
A
ASN
233
HELX_P
A
VAL
237
A
VAL
237
5
10
5
A
GLY
240
A
GLY
240
HELX_P
A
LYS
261
A
LYS
261
1
11
22
disulf
2.065
A
CYS
162
A
SG
CYS
162
1_555
A
CYS
167
A
SG
CYS
167
1_555
disulf
2.054
A
CYS
208
A
SG
CYS
208
1_555
A
CYS
242
A
SG
CYS
242
1_555
metalc
3.107
A
GLN
9
A
O
GLN
9
1_555
A
NA
304
E
NA
NA
1_555
metalc
2.731
A
ASN
54
A
OD1
ASN
54
1_555
A
NA
304
E
NA
NA
1_555
metalc
2.551
A
SER
70
A
O
SER
70
1_555
A
NA
303
D
NA
NA
1_555
metalc
2.688
A
THR
71
A
O
THR
71
1_555
A
NA
303
D
NA
NA
1_555
metalc
2.098
A
HIS
72
A
NE2
HIS
72
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.019
A
HIS
74
A
ND1
HIS
74
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.051
A
ASP
76
A
OD2
ASP
76
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.014
A
HIS
77
A
NE2
HIS
77
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.057
A
HIS
150
A
NE2
HIS
150
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.924
A
GLY
153
A
O
GLY
153
1_555
A
NA
303
D
NA
NA
1_555
metalc
2.014
A
HIS
215
A
NE2
HIS
215
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.179
A
ZN
301
B
ZN
ZN
1_555
A
MCR
305
F
S2
MCR
1_555
metalc
2.393
A
ZN
302
C
ZN
ZN
1_555
A
MCR
305
F
S2
MCR
1_555
metalc
2.601
A
ZN
302
C
ZN
ZN
1_555
A
MCR
305
F
O
MCR
1_555
metalc
2.730
A
NA
303
D
NA
NA
1_555
A
HOH
505
G
O
HOH
1_555
metalc
2.593
A
NA
304
E
NA
NA
1_555
A
HOH
498
G
O
HOH
1_555
metalc
2.867
A
NA
304
E
NA
NA
1_555
A
HOH
529
G
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
hydrolase, HYDROLASE-HYDROLASE INHIBITOR complex
G5ELM3_SERMA
UNP
1
19
G5ELM3
QDRDWSSPQQPFTIYGNTHYVGTGGISAVLLSSPQGHILVDGTTEKGAQVVAANIRAMGFKLSDVKYILSTHSHEDHAGG
ISAMQKLTGATVLAGAANVDTLRTGVSPKSDPQFGSLSNFPGSAKVRAVADGELVKLGPLAVKAHATPGHTEGGITWTWQ
SCEQGKCKDVVFADSLTAVSADSYRFSDHPEVVASLRGSFEAVEKLSCDIAIAAHPEVNDMWTRQQRAAKEGNSAYVDNG
ACRAIAAAGRKRLETRLASEKR
19
280
3VQZ
1
262
G5ELM3
A
1
1
262
7
5
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
PHE
12
A
PHE
12
A
TYR
15
A
TYR
15
A
THR
18
A
THR
18
A
TYR
20
A
TYR
20
A
VAL
29
A
VAL
29
A
LEU
31
A
LEU
31
A
HIS
37
A
HIS
37
A
VAL
40
A
VAL
40
A
VAL
65
A
VAL
65
A
LEU
69
A
LEU
69
A
THR
91
A
THR
91
A
GLY
95
A
GLY
95
A
VAL
126
A
VAL
126
A
VAL
129
A
VAL
129
A
LEU
134
A
LEU
134
A
LEU
137
A
LEU
137
A
LEU
140
A
LEU
140
A
ALA
146
A
ALA
146
A
ILE
155
A
ILE
155
A
GLU
163
A
GLU
163
A
LYS
166
A
LYS
166
A
ALA
173
A
ALA
173
A
ILE
210
A
ILE
210
A
ALA
213
A
ALA
213
BINDING SITE FOR RESIDUE ZN A 301
A
ZN
301
Software
5
BINDING SITE FOR RESIDUE ZN A 302
A
ZN
302
Software
5
BINDING SITE FOR RESIDUE NA A 303
A
NA
303
Software
7
BINDING SITE FOR RESIDUE NA A 304
A
NA
304
Software
5
BINDING SITE FOR RESIDUE MCR A 305
A
MCR
305
Software
11
A
HIS
72
A
HIS
72
5
1_555
A
HIS
74
A
HIS
74
5
1_555
A
HIS
150
A
HIS
150
5
1_555
A
ZN
302
C
ZN
5
1_555
A
MCR
305
F
MCR
5
1_555
A
ASP
76
A
ASP
76
5
1_555
A
HIS
77
A
HIS
77
5
1_555
A
HIS
215
A
HIS
215
5
1_555
A
ZN
301
B
ZN
5
1_555
A
MCR
305
F
MCR
5
1_555
A
SER
70
A
SER
70
7
1_555
A
THR
71
A
THR
71
7
1_555
A
ALA
94
A
ALA
94
7
1_555
A
GLY
95
A
GLY
95
7
1_555
A
GLY
153
A
GLY
153
7
1_555
A
ILE
155
A
ILE
155
7
1_555
A
HOH
505
G
HOH
7
1_555
A
GLN
9
A
GLN
9
5
1_555
A
VAL
50
A
VAL
50
5
1_555
A
ASN
54
A
ASN
54
5
1_555
A
HOH
498
G
HOH
5
1_555
A
HOH
529
G
HOH
5
1_555
A
HIS
72
A
HIS
72
11
1_555
A
HIS
74
A
HIS
74
11
1_555
A
ASP
76
A
ASP
76
11
1_555
A
HIS
77
A
HIS
77
11
1_555
A
HIS
150
A
HIS
150
11
1_555
A
SER
175
A
SER
175
11
1_555
A
THR
177
A
THR
177
11
1_555
A
HIS
215
A
HIS
215
11
1_555
A
ZN
301
B
ZN
11
1_555
A
ZN
302
C
ZN
11
1_555
A
HOH
433
G
HOH
11
1_555
144
P 31