0.006529 0.000000 0.000698 0.000000 0.023493 0.000000 0.000000 0.000000 0.023841 0.00000 0.00000 0.00000 Nakabayashi, M. Shimizu, M. Ikura, T. Ito, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 96.10 90.00 153.174 42.565 42.184 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C28 H44 O4 S 476.712 (1R,2E,3R,5Z,7E)-17-{(1S)-1-[(2-ethyl-2-hydroxybutyl)sulfanyl]ethyl}-2-(2-hydroxyethylidene)-9,10-secoestra-5,7,16-triene-1,3-diol non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N C N 392 S C N 393 S C N 394 N C N 395 N C N 396 N C N 397 N C N 398 N C N 399 N C N 400 N C N 401 N C N 402 N C N 403 N O N 404 N S N 405 S C N 406 N C N 407 N C N 408 N C N 409 N C N 410 N C N 411 N C N 412 N C N 413 N C N 414 N C N 415 R C N 416 N O N 417 N C N 418 R C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 E doub N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 Z doub N 388 N sing N 389 E doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 56 6745 6760 10.1021/jm400537h 23944708 Crystal structures of hereditary vitamin D-resistant rickets-associated vitamin D receptor mutants R270L and W282R bound to 1,25-dihydroxyvitamin D3 and synthetic ligands. 2013 10.2210/pdb3vt5/pdb pdb_00003vt5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 2007-10-25 SINGLE WAVELENGTH M x-ray 1 0.97800 1.0 BL-6A Photon Factory 0.97800 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 30551.002 Vitamin D3 receptor UNP RESIDUES 116-423 R270L 1 man polymer 1570.898 COACTIVATOR PEPTIDE DRIP 1 syn polymer 476.712 (1R,2E,3R,5Z,7E)-17-{(1S)-1-[(2-ethyl-2-hydroxybutyl)sulfanyl]ethyl}-2-(2-hydroxyethylidene)-9,10-secoestra-5,7,16-triene-1,3-diol 1 syn non-polymer 18.015 water 24 nat water VDR, 1,25-dihydroxyvitamin D3 receptor, Nuclear receptor subfamily 1 group I member 1 no no GSHMGSPNSPLKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSVTLDLSPLSMLPHLADLVSY SIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLLSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKF QVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEE HSKQYRSLSFQPENSMKLTPLVLEVFGNEIS GSHMGSPNSPLKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSVTLDLSPLSMLPHLADLVSY SIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLLSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKF QVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEE HSKQYRSLSFQPENSMKLTPLVLEVFGNEIS A polypeptide(L) no no KNHPMLMNLLKDN KNHPMLMNLLKDN C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n rats sample Nr1i1, Vdr 10116 Rattus norvegicus 562 Escherichia coli C41 Plasmid pET14b 2.13 42.21 VAPOR DIFFUSION, HANGING DROP 7.0 MOPS-Na, sodium formate, PEG 4000, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Database references Database references Data collection Database references Derived calculations Refinement description 1 0 2013-05-22 1 1 2013-09-11 1 2 2014-02-12 1 3 2023-11-08 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBJ Y PDBJ 2012-05-19 REL REL YI2 (1R,2E,3R,5Z,7E)-17-{(1S)-1-[(2-ethyl-2-hydroxybutyl)sulfanyl]ethyl}-2-(2-hydroxyethylidene)-9,10-secoestra-5,7,16-triene-1,3-diol HOH water PEPTIDE SYNTHESIS sample 2ZLC PDB experimental model YI2 500 3 YI2 YI2 500 A HOH 1 4 HOH HOH 601 A HOH 2 4 HOH HOH 602 A HOH 3 4 HOH HOH 603 A HOH 4 4 HOH HOH 604 A HOH 5 4 HOH HOH 605 A HOH 6 4 HOH HOH 606 A HOH 7 4 HOH HOH 607 A HOH 8 4 HOH HOH 608 A HOH 9 4 HOH HOH 609 A HOH 10 4 HOH HOH 610 A HOH 11 4 HOH HOH 611 A HOH 12 4 HOH HOH 612 A HOH 13 4 HOH HOH 613 A HOH 14 4 HOH HOH 614 A HOH 15 4 HOH HOH 615 A HOH 16 4 HOH HOH 616 A HOH 17 4 HOH HOH 617 A HOH 18 4 HOH HOH 618 A HOH 19 4 HOH HOH 619 A HOH 20 4 HOH HOH 620 A HOH 21 4 HOH HOH 621 A HOH 22 4 HOH HOH 622 A HOH 23 4 HOH HOH 623 A HOH 24 4 HOH HOH 624 A n 1 106 A n 2 107 A n 3 108 A n 4 109 A n 5 110 A n 6 111 A n 7 112 A n 8 113 A n 9 114 A n 10 115 A n 11 116 A n 12 117 A n 13 118 A n 14 119 A n 15 120 A n 16 121 A n 17 122 A LYS 123 n 18 LYS 123 A LEU 124 n 19 LEU 124 A SER 125 n 20 SER 125 A GLU 126 n 21 GLU 126 A GLU 127 n 22 GLU 127 A GLN 128 n 23 GLN 128 A GLN 129 n 24 GLN 129 A HIS 130 n 25 HIS 130 A ILE 131 n 26 ILE 131 A ILE 132 n 27 ILE 132 A ALA 133 n 28 ALA 133 A ILE 134 n 29 ILE 134 A LEU 135 n 30 LEU 135 A LEU 136 n 31 LEU 136 A ASP 137 n 32 ASP 137 A ALA 138 n 33 ALA 138 A HIS 139 n 34 HIS 139 A HIS 140 n 35 HIS 140 A LYS 141 n 36 LYS 141 A THR 142 n 37 THR 142 A TYR 143 n 38 TYR 143 A ASP 144 n 39 ASP 144 A PRO 145 n 40 PRO 145 A THR 146 n 41 THR 146 A TYR 147 n 42 TYR 147 A ALA 148 n 43 ALA 148 A ASP 149 n 44 ASP 149 A PHE 150 n 45 PHE 150 A ARG 151 n 46 ARG 151 A ASP 152 n 47 ASP 152 A PHE 153 n 48 PHE 153 A ARG 154 n 49 ARG 154 A PRO 155 n 50 PRO 155 A PRO 156 n 51 PRO 156 A VAL 157 n 52 VAL 157 A ARG 158 n 53 ARG 158 A MET 159 n 54 MET 159 A n 55 160 A n 56 161 A n 57 162 A n 58 163 A n 59 164 A n 60 212 A n 61 213 A n 62 214 A n 63 215 A n 64 216 A n 65 217 A SER 218 n 66 SER 218 A PRO 219 n 67 PRO 219 A LEU 220 n 68 LEU 220 A SER 221 n 69 SER 221 A MET 222 n 70 MET 222 A LEU 223 n 71 LEU 223 A PRO 224 n 72 PRO 224 A HIS 225 n 73 HIS 225 A LEU 226 n 74 LEU 226 A ALA 227 n 75 ALA 227 A ASP 228 n 76 ASP 228 A LEU 229 n 77 LEU 229 A VAL 230 n 78 VAL 230 A SER 231 n 79 SER 231 A TYR 232 n 80 TYR 232 A SER 233 n 81 SER 233 A ILE 234 n 82 ILE 234 A GLN 235 n 83 GLN 235 A LYS 236 n 84 LYS 236 A VAL 237 n 85 VAL 237 A ILE 238 n 86 ILE 238 A GLY 239 n 87 GLY 239 A PHE 240 n 88 PHE 240 A ALA 241 n 89 ALA 241 A LYS 242 n 90 LYS 242 A MET 243 n 91 MET 243 A ILE 244 n 92 ILE 244 A PRO 245 n 93 PRO 245 A GLY 246 n 94 GLY 246 A PHE 247 n 95 PHE 247 A ARG 248 n 96 ARG 248 A ASP 249 n 97 ASP 249 A LEU 250 n 98 LEU 250 A THR 251 n 99 THR 251 A SER 252 n 100 SER 252 A ASP 253 n 101 ASP 253 A ASP 254 n 102 ASP 254 A GLN 255 n 103 GLN 255 A ILE 256 n 104 ILE 256 A VAL 257 n 105 VAL 257 A LEU 258 n 106 LEU 258 A LEU 259 n 107 LEU 259 A LYS 260 n 108 LYS 260 A SER 261 n 109 SER 261 A SER 262 n 110 SER 262 A ALA 263 n 111 ALA 263 A ILE 264 n 112 ILE 264 A GLU 265 n 113 GLU 265 A VAL 266 n 114 VAL 266 A ILE 267 n 115 ILE 267 A MET 268 n 116 MET 268 A LEU 269 n 117 LEU 269 A LEU 270 n 118 LEU 270 A SER 271 n 119 SER 271 A ASN 272 n 120 ASN 272 A GLN 273 n 121 GLN 273 A SER 274 n 122 SER 274 A PHE 275 n 123 PHE 275 A THR 276 n 124 THR 276 A MET 277 n 125 MET 277 A ASP 278 n 126 ASP 278 A ASP 279 n 127 ASP 279 A MET 280 n 128 MET 280 A SER 281 n 129 SER 281 A TRP 282 n 130 TRP 282 A ASP 283 n 131 ASP 283 A CYS 284 n 132 CYS 284 A GLY 285 n 133 GLY 285 A SER 286 n 134 SER 286 A GLN 287 n 135 GLN 287 A ASP 288 n 136 ASP 288 A TYR 289 n 137 TYR 289 A LYS 290 n 138 LYS 290 A TYR 291 n 139 TYR 291 A ASP 292 n 140 ASP 292 A VAL 293 n 141 VAL 293 A THR 294 n 142 THR 294 A ASP 295 n 143 ASP 295 A VAL 296 n 144 VAL 296 A SER 297 n 145 SER 297 A LYS 298 n 146 LYS 298 A ALA 299 n 147 ALA 299 A GLY 300 n 148 GLY 300 A HIS 301 n 149 HIS 301 A THR 302 n 150 THR 302 A LEU 303 n 151 LEU 303 A GLU 304 n 152 GLU 304 A LEU 305 n 153 LEU 305 A ILE 306 n 154 ILE 306 A GLU 307 n 155 GLU 307 A PRO 308 n 156 PRO 308 A LEU 309 n 157 LEU 309 A ILE 310 n 158 ILE 310 A LYS 311 n 159 LYS 311 A PHE 312 n 160 PHE 312 A GLN 313 n 161 GLN 313 A VAL 314 n 162 VAL 314 A GLY 315 n 163 GLY 315 A LEU 316 n 164 LEU 316 A LYS 317 n 165 LYS 317 A LYS 318 n 166 LYS 318 A LEU 319 n 167 LEU 319 A ASN 320 n 168 ASN 320 A LEU 321 n 169 LEU 321 A HIS 322 n 170 HIS 322 A GLU 323 n 171 GLU 323 A GLU 324 n 172 GLU 324 A GLU 325 n 173 GLU 325 A HIS 326 n 174 HIS 326 A VAL 327 n 175 VAL 327 A LEU 328 n 176 LEU 328 A LEU 329 n 177 LEU 329 A MET 330 n 178 MET 330 A ALA 331 n 179 ALA 331 A ILE 332 n 180 ILE 332 A CYS 333 n 181 CYS 333 A ILE 334 n 182 ILE 334 A VAL 335 n 183 VAL 335 A SER 336 n 184 SER 336 A PRO 337 n 185 PRO 337 A ASP 338 n 186 ASP 338 A ARG 339 n 187 ARG 339 A PRO 340 n 188 PRO 340 A GLY 341 n 189 GLY 341 A VAL 342 n 190 VAL 342 A GLN 343 n 191 GLN 343 A ASP 344 n 192 ASP 344 A ALA 345 n 193 ALA 345 A LYS 346 n 194 LYS 346 A LEU 347 n 195 LEU 347 A VAL 348 n 196 VAL 348 A GLU 349 n 197 GLU 349 A ALA 350 n 198 ALA 350 A ILE 351 n 199 ILE 351 A GLN 352 n 200 GLN 352 A ASP 353 n 201 ASP 353 A ARG 354 n 202 ARG 354 A LEU 355 n 203 LEU 355 A SER 356 n 204 SER 356 A ASN 357 n 205 ASN 357 A THR 358 n 206 THR 358 A LEU 359 n 207 LEU 359 A GLN 360 n 208 GLN 360 A THR 361 n 209 THR 361 A TYR 362 n 210 TYR 362 A ILE 363 n 211 ILE 363 A ARG 364 n 212 ARG 364 A CYS 365 n 213 CYS 365 A ARG 366 n 214 ARG 366 A HIS 367 n 215 HIS 367 A PRO 368 n 216 PRO 368 A PRO 369 n 217 PRO 369 A PRO 370 n 218 PRO 370 A GLY 371 n 219 GLY 371 A SER 372 n 220 SER 372 A HIS 373 n 221 HIS 373 A GLN 374 n 222 GLN 374 A LEU 375 n 223 LEU 375 A TYR 376 n 224 TYR 376 A ALA 377 n 225 ALA 377 A LYS 378 n 226 LYS 378 A MET 379 n 227 MET 379 A ILE 380 n 228 ILE 380 A GLN 381 n 229 GLN 381 A LYS 382 n 230 LYS 382 A LEU 383 n 231 LEU 383 A ALA 384 n 232 ALA 384 A ASP 385 n 233 ASP 385 A LEU 386 n 234 LEU 386 A ARG 387 n 235 ARG 387 A SER 388 n 236 SER 388 A LEU 389 n 237 LEU 389 A ASN 390 n 238 ASN 390 A GLU 391 n 239 GLU 391 A GLU 392 n 240 GLU 392 A HIS 393 n 241 HIS 393 A SER 394 n 242 SER 394 A LYS 395 n 243 LYS 395 A GLN 396 n 244 GLN 396 A TYR 397 n 245 TYR 397 A ARG 398 n 246 ARG 398 A SER 399 n 247 SER 399 A LEU 400 n 248 LEU 400 A SER 401 n 249 SER 401 A PHE 402 n 250 PHE 402 A GLN 403 n 251 GLN 403 A PRO 404 n 252 PRO 404 A GLU 405 n 253 GLU 405 A ASN 406 n 254 ASN 406 A SER 407 n 255 SER 407 A MET 408 n 256 MET 408 A LYS 409 n 257 LYS 409 A LEU 410 n 258 LEU 410 A THR 411 n 259 THR 411 A PRO 412 n 260 PRO 412 A LEU 413 n 261 LEU 413 A VAL 414 n 262 VAL 414 A LEU 415 n 263 LEU 415 A GLU 416 n 264 GLU 416 A VAL 417 n 265 VAL 417 A PHE 418 n 266 PHE 418 A GLY 419 n 267 GLY 419 A ASN 420 n 268 ASN 420 A n 269 421 A n 270 422 A n 271 423 A LYS 625 n 1 LYS 625 C ASN 626 n 2 ASN 626 C HIS 627 n 3 HIS 627 C PRO 628 n 4 PRO 628 C MET 629 n 5 MET 629 C LEU 630 n 6 LEU 630 C MET 631 n 7 MET 631 C ASN 632 n 8 ASN 632 C LEU 633 n 9 LEU 633 C LEU 634 n 10 LEU 634 C LYS 635 n 11 LYS 635 C n 12 636 C n 13 637 C software_defined_assembly PISA 2 dimeric author_defined_assembly 1 monomeric 1070 -8 11870 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 276 A N THR 124 A O SER 281 A O SER 129 A N TRP 282 A N TRP 130 A O TYR 291 A O TYR 139 1 A GLY 106 A GLY 1 1 Y 1 A SER 107 A SER 2 1 Y 1 A HIS 108 A HIS 3 1 Y 1 A MET 109 A MET 4 1 Y 1 A GLY 110 A GLY 5 1 Y 1 A SER 111 A SER 6 1 Y 1 A PRO 112 A PRO 7 1 Y 1 A ASN 113 A ASN 8 1 Y 1 A SER 114 A SER 9 1 Y 1 A PRO 115 A PRO 10 1 Y 1 A LEU 116 A LEU 11 1 Y 1 A LYS 117 A LYS 12 1 Y 1 A ASP 118 A ASP 13 1 Y 1 A SER 119 A SER 14 1 Y 1 A LEU 120 A LEU 15 1 Y 1 A ARG 121 A ARG 16 1 Y 1 A PRO 122 A PRO 17 1 Y 1 A ASP 160 A ASP 55 1 Y 1 A GLY 161 A GLY 56 1 Y 1 A SER 162 A SER 57 1 Y 1 A THR 163 A THR 58 1 Y 1 A GLY 164 A GLY 59 1 Y 1 A SER 212 A SER 60 1 Y 1 A VAL 213 A VAL 61 1 Y 1 A THR 214 A THR 62 1 Y 1 A LEU 215 A LEU 63 1 Y 1 A ASP 216 A ASP 64 1 Y 1 A LEU 217 A LEU 65 1 Y 1 A GLU 421 A GLU 269 1 Y 1 A ILE 422 A ILE 270 1 Y 1 A SER 423 A SER 271 1 Y 1 C ASP 636 B ASP 12 1 Y 1 C ASN 637 B ASN 13 1 Y 1 A CYS 284 -108.37 62.55 1 A GLN 343 -98.24 -66.89 1 A LEU 410 -78.46 -168.36 protein.param protein.top water_rep.param water.top YI2.param YI2.top 53.0 -14.46 0.00 -9.17 23.86 0.00 -9.39 0.266 0.007 0.224 0.224 2.11 41.00 1453 14420 10.1 90.9 RANDOM 171489.52 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT 2ZLC FLAT MODEL 55.0151 0.359544 0.36 0.29 5.00 0.41 0.40 2.11 41.00 24 2069 33 0 2012 0.005 0.7 19.2 0.69 1.51 1.50 2.48 2.00 4.82 4.00 6.11 5.00 0.367 0.027 0.356 2.23 182 1801 6 9.2 74.9 25.2 2.11 50.00 3VT5 14420 1 2.11 2.18 1 data collection HKL-2000 refinement CNS data reduction HKL-2000 data scaling HKL-2000 phasing CNS Crystal structures of rat VDR-LBD with R270L mutation 1 N N 2 N N 3 N N 4 N N A SER 125 A SER 20 HELX_P A TYR 143 A TYR 38 1 1 19 A TYR 147 A TYR 42 HELX_P A PHE 153 A PHE 48 5 2 7 A MET 222 A MET 70 HELX_P A MET 243 A MET 91 1 3 22 A GLY 246 A GLY 94 HELX_P A LEU 250 A LEU 98 5 4 5 A THR 251 A THR 99 HELX_P A ASN 272 A ASN 120 1 5 22 A ASP 292 A ASP 140 HELX_P A LYS 298 A LYS 146 1 6 7 A THR 302 A THR 150 HELX_P A LEU 319 A LEU 167 1 7 18 A HIS 322 A HIS 170 HELX_P A VAL 335 A VAL 183 1 8 14 A ASP 344 A ASP 192 HELX_P A HIS 367 A HIS 215 1 9 24 A GLN 374 A GLN 222 HELX_P A GLN 403 A GLN 251 1 10 30 A GLN 403 A GLN 251 HELX_P A MET 408 A MET 256 1 11 6 A THR 411 A THR 259 HELX_P A GLY 419 A GLY 267 1 12 9 C HIS 627 B HIS 3 HELX_P C LYS 635 B LYS 11 1 13 9 HORMONE RECEPTOR Transcription, HORMONE RECEPTOR A PRO 369 A PRO 217 1 A PRO 370 A PRO 218 0.27 VDR_RAT UNP 1 116 P13053 LKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSYSPRPTLSFSGNSSSSSSDLYTTSLDMMEP SGFSNLDLNGEDSDDPSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSF TMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRL SNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEIS 3VT5 PDB 2 3VT5 116 423 3VT5 116 423 P13053 A 1 11 271 625 637 3VT5 625 637 3VT5 C 2 1 13 1 expression tag GLY 106 3VT5 A P13053 UNP 1 1 expression tag SER 107 3VT5 A P13053 UNP 2 1 expression tag HIS 108 3VT5 A P13053 UNP 3 1 expression tag MET 109 3VT5 A P13053 UNP 4 1 expression tag GLY 110 3VT5 A P13053 UNP 5 1 expression tag SER 111 3VT5 A P13053 UNP 6 1 expression tag PRO 112 3VT5 A P13053 UNP 7 1 expression tag ASN 113 3VT5 A P13053 UNP 8 1 expression tag SER 114 3VT5 A P13053 UNP 9 1 expression tag PRO 115 3VT5 A P13053 UNP 10 1 SER deletion 3VT5 A P13053 UNP 165 1 TYR deletion 3VT5 A P13053 UNP 166 1 SER deletion 3VT5 A P13053 UNP 167 1 PRO deletion 3VT5 A P13053 UNP 168 1 ARG deletion 3VT5 A P13053 UNP 169 1 PRO deletion 3VT5 A P13053 UNP 170 1 THR deletion 3VT5 A P13053 UNP 171 1 LEU deletion 3VT5 A P13053 UNP 172 1 SER deletion 3VT5 A P13053 UNP 173 1 PHE deletion 3VT5 A P13053 UNP 174 1 SER deletion 3VT5 A P13053 UNP 175 1 GLY deletion 3VT5 A P13053 UNP 176 1 ASN deletion 3VT5 A P13053 UNP 177 1 SER deletion 3VT5 A P13053 UNP 178 1 SER deletion 3VT5 A P13053 UNP 179 1 SER deletion 3VT5 A P13053 UNP 180 1 SER deletion 3VT5 A P13053 UNP 181 1 SER deletion 3VT5 A P13053 UNP 182 1 SER deletion 3VT5 A P13053 UNP 183 1 ASP deletion 3VT5 A P13053 UNP 184 1 LEU deletion 3VT5 A P13053 UNP 185 1 TYR deletion 3VT5 A P13053 UNP 186 1 THR deletion 3VT5 A P13053 UNP 187 1 THR deletion 3VT5 A P13053 UNP 188 1 SER deletion 3VT5 A P13053 UNP 189 1 LEU deletion 3VT5 A P13053 UNP 190 1 ASP deletion 3VT5 A P13053 UNP 191 1 MET deletion 3VT5 A P13053 UNP 192 1 MET deletion 3VT5 A P13053 UNP 193 1 GLU deletion 3VT5 A P13053 UNP 194 1 PRO deletion 3VT5 A P13053 UNP 195 1 SER deletion 3VT5 A P13053 UNP 196 1 GLY deletion 3VT5 A P13053 UNP 197 1 PHE deletion 3VT5 A P13053 UNP 198 1 SER deletion 3VT5 A P13053 UNP 199 1 ASN deletion 3VT5 A P13053 UNP 200 1 LEU deletion 3VT5 A P13053 UNP 201 1 ASP deletion 3VT5 A P13053 UNP 202 1 LEU deletion 3VT5 A P13053 UNP 203 1 ASN deletion 3VT5 A P13053 UNP 204 1 GLY deletion 3VT5 A P13053 UNP 205 1 GLU deletion 3VT5 A P13053 UNP 206 1 ASP deletion 3VT5 A P13053 UNP 207 1 SER deletion 3VT5 A P13053 UNP 208 1 ASP deletion 3VT5 A P13053 UNP 209 1 ASP deletion 3VT5 A P13053 UNP 210 1 PRO deletion 3VT5 A P13053 UNP 211 1 ARG engineered mutation LEU 270 3VT5 A P13053 UNP 270 118 3 anti-parallel anti-parallel A PHE 275 A PHE 123 A THR 276 A THR 124 A SER 281 A SER 129 A ASP 283 A ASP 131 A LYS 290 A LYS 138 A TYR 291 A TYR 139 BINDING SITE FOR RESIDUE YI2 A 500 A YI2 500 Software 13 A TYR 143 A TYR 38 13 1_555 A LEU 223 A LEU 71 13 1_555 A VAL 230 A VAL 78 13 1_555 A TYR 232 A TYR 80 13 1_555 A SER 233 A SER 81 13 1_555 A SER 271 A SER 119 13 1_555 A SER 274 A SER 122 13 1_555 A TRP 282 A TRP 130 13 1_555 A CYS 284 A CYS 132 13 1_555 A VAL 296 A VAL 144 13 1_555 A HIS 301 A HIS 149 13 1_555 A HIS 393 A HIS 241 13 1_555 A HOH 622 D HOH 13 1_555 5 C 1 2 1