0.006464
0.000000
0.000637
0.000000
0.023781
0.000000
0.000000
0.000000
0.023941
0.00000
0.00000
0.00000
Nakabayashi, M.
Shimizu, M.
Ikura, T.
Ito, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
95.63
90.00
154.714
42.050
41.972
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C31 H50 O4
486.726
(1R,2Z,3R,5E,7E,9beta,17beta)-2-(2-hydroxyethylidene)-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-9-(prop-2-en-1-yl)-9,10-secoestra-5,7-diene-1,3-diol
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
O
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
C
N
397
N
C
N
398
R
C
N
399
N
C
N
400
R
C
N
401
N
C
N
402
N
C
N
403
R
C
N
404
R
C
N
405
N
C
N
406
N
C
N
407
N
C
N
408
S
C
N
409
N
C
N
410
N
C
N
411
N
C
N
412
N
C
N
413
N
C
N
414
N
C
N
415
N
C
N
416
N
C
N
417
R
C
N
418
N
O
N
419
N
C
N
420
R
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
Z
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
Z
doub
N
388
N
sing
N
389
E
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
56
6745
6760
10.1021/jm400537h
23944708
Crystal structures of hereditary vitamin D-resistant rickets-associated vitamin D receptor mutants R270L and W282R bound to 1,25-dihydroxyvitamin D3 and synthetic ligands.
2013
10.2210/pdb3vt9/pdb
pdb_00003vt9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
2008-02-28
SINGLE WAVELENGTH
M
x-ray
1
0.97800
1.0
BL-6A
Photon Factory
0.97800
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
30566.021
Vitamin D3 receptor
UNP RESIDUES 116-423
W282R
1
man
polymer
1570.898
COACTIVATOR PEPTIDE DRIP
1
syn
polymer
486.726
(1R,2Z,3R,5E,7E,9beta,17beta)-2-(2-hydroxyethylidene)-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-9-(prop-2-en-1-yl)-9,10-secoestra-5,7-diene-1,3-diol
1
syn
non-polymer
18.015
water
39
nat
water
VDR, 1,25-dihydroxyvitamin D3 receptor, Nuclear receptor subfamily 1 group I member 1
no
no
GSHMGSPNSPLKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSVTLDLSPLSMLPHLADLVSY
SIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSRDCGSQDYKYDVTDVSKAGHTLELIEPLIKF
QVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEE
HSKQYRSLSFQPENSMKLTPLVLEVFGNEIS
GSHMGSPNSPLKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSVTLDLSPLSMLPHLADLVSY
SIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSRDCGSQDYKYDVTDVSKAGHTLELIEPLIKF
QVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEE
HSKQYRSLSFQPENSMKLTPLVLEVFGNEIS
A
polypeptide(L)
no
no
KNHPMLMNLLKDN
KNHPMLMNLLKDN
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
rats
sample
Nr1i1, Vdr
10116
Rattus norvegicus
562
Escherichia coli
C41
Plasmid
pET14b
2.11
41.81
VAPOR DIFFUSION, HANGING DROP
7.0
MOPS-Na, sodium formate, PEG 4000, ethyleneglycol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-05-22
1
1
2013-09-11
1
2
2014-02-12
1
3
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2012-05-19
REL
REL
YI4
(1R,2Z,3R,5E,7E,9beta,17beta)-2-(2-hydroxyethylidene)-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-9-(prop-2-en-1-yl)-9,10-secoestra-5,7-diene-1,3-diol
HOH
water
PEPTIDE SYNTHESIS
sample
2ZLC
PDB
experimental model
YI4
500
3
YI4
YI4
500
A
HOH
1
4
HOH
HOH
601
A
HOH
2
4
HOH
HOH
602
A
HOH
3
4
HOH
HOH
603
A
HOH
4
4
HOH
HOH
604
A
HOH
5
4
HOH
HOH
605
A
HOH
6
4
HOH
HOH
606
A
HOH
7
4
HOH
HOH
607
A
HOH
8
4
HOH
HOH
608
A
HOH
9
4
HOH
HOH
609
A
HOH
10
4
HOH
HOH
610
A
HOH
11
4
HOH
HOH
611
A
HOH
12
4
HOH
HOH
612
A
HOH
13
4
HOH
HOH
613
A
HOH
14
4
HOH
HOH
614
A
HOH
15
4
HOH
HOH
615
A
HOH
16
4
HOH
HOH
616
A
HOH
17
4
HOH
HOH
617
A
HOH
19
4
HOH
HOH
618
A
HOH
20
4
HOH
HOH
619
A
HOH
21
4
HOH
HOH
620
A
HOH
22
4
HOH
HOH
621
A
HOH
23
4
HOH
HOH
622
A
HOH
24
4
HOH
HOH
623
A
HOH
25
4
HOH
HOH
624
A
HOH
26
4
HOH
HOH
625
A
HOH
27
4
HOH
HOH
626
A
HOH
28
4
HOH
HOH
627
A
HOH
29
4
HOH
HOH
628
A
HOH
30
4
HOH
HOH
629
A
HOH
31
4
HOH
HOH
630
A
HOH
32
4
HOH
HOH
631
A
HOH
33
4
HOH
HOH
632
A
HOH
34
4
HOH
HOH
633
A
HOH
35
4
HOH
HOH
634
A
HOH
36
4
HOH
HOH
635
A
HOH
37
4
HOH
HOH
636
A
HOH
38
4
HOH
HOH
637
A
HOH
39
4
HOH
HOH
638
A
HOH
18
4
HOH
HOH
701
C
n
1
106
A
n
2
107
A
n
3
108
A
n
4
109
A
n
5
110
A
n
6
111
A
n
7
112
A
n
8
113
A
n
9
114
A
n
10
115
A
n
11
116
A
n
12
117
A
n
13
118
A
n
14
119
A
n
15
120
A
n
16
121
A
n
17
122
A
LYS
123
n
18
LYS
123
A
LEU
124
n
19
LEU
124
A
SER
125
n
20
SER
125
A
GLU
126
n
21
GLU
126
A
GLU
127
n
22
GLU
127
A
GLN
128
n
23
GLN
128
A
GLN
129
n
24
GLN
129
A
HIS
130
n
25
HIS
130
A
ILE
131
n
26
ILE
131
A
ILE
132
n
27
ILE
132
A
ALA
133
n
28
ALA
133
A
ILE
134
n
29
ILE
134
A
LEU
135
n
30
LEU
135
A
LEU
136
n
31
LEU
136
A
ASP
137
n
32
ASP
137
A
ALA
138
n
33
ALA
138
A
HIS
139
n
34
HIS
139
A
HIS
140
n
35
HIS
140
A
LYS
141
n
36
LYS
141
A
THR
142
n
37
THR
142
A
TYR
143
n
38
TYR
143
A
ASP
144
n
39
ASP
144
A
PRO
145
n
40
PRO
145
A
THR
146
n
41
THR
146
A
TYR
147
n
42
TYR
147
A
ALA
148
n
43
ALA
148
A
ASP
149
n
44
ASP
149
A
PHE
150
n
45
PHE
150
A
ARG
151
n
46
ARG
151
A
ASP
152
n
47
ASP
152
A
PHE
153
n
48
PHE
153
A
ARG
154
n
49
ARG
154
A
PRO
155
n
50
PRO
155
A
PRO
156
n
51
PRO
156
A
VAL
157
n
52
VAL
157
A
ARG
158
n
53
ARG
158
A
MET
159
n
54
MET
159
A
n
55
160
A
n
56
161
A
n
57
162
A
n
58
163
A
n
59
164
A
n
60
212
A
n
61
213
A
n
62
214
A
n
63
215
A
n
64
216
A
n
65
217
A
SER
218
n
66
SER
218
A
PRO
219
n
67
PRO
219
A
LEU
220
n
68
LEU
220
A
SER
221
n
69
SER
221
A
MET
222
n
70
MET
222
A
LEU
223
n
71
LEU
223
A
PRO
224
n
72
PRO
224
A
HIS
225
n
73
HIS
225
A
LEU
226
n
74
LEU
226
A
ALA
227
n
75
ALA
227
A
ASP
228
n
76
ASP
228
A
LEU
229
n
77
LEU
229
A
VAL
230
n
78
VAL
230
A
SER
231
n
79
SER
231
A
TYR
232
n
80
TYR
232
A
SER
233
n
81
SER
233
A
ILE
234
n
82
ILE
234
A
GLN
235
n
83
GLN
235
A
LYS
236
n
84
LYS
236
A
VAL
237
n
85
VAL
237
A
ILE
238
n
86
ILE
238
A
GLY
239
n
87
GLY
239
A
PHE
240
n
88
PHE
240
A
ALA
241
n
89
ALA
241
A
LYS
242
n
90
LYS
242
A
MET
243
n
91
MET
243
A
ILE
244
n
92
ILE
244
A
PRO
245
n
93
PRO
245
A
GLY
246
n
94
GLY
246
A
PHE
247
n
95
PHE
247
A
ARG
248
n
96
ARG
248
A
ASP
249
n
97
ASP
249
A
LEU
250
n
98
LEU
250
A
THR
251
n
99
THR
251
A
SER
252
n
100
SER
252
A
ASP
253
n
101
ASP
253
A
ASP
254
n
102
ASP
254
A
GLN
255
n
103
GLN
255
A
ILE
256
n
104
ILE
256
A
VAL
257
n
105
VAL
257
A
LEU
258
n
106
LEU
258
A
LEU
259
n
107
LEU
259
A
LYS
260
n
108
LYS
260
A
SER
261
n
109
SER
261
A
SER
262
n
110
SER
262
A
ALA
263
n
111
ALA
263
A
ILE
264
n
112
ILE
264
A
GLU
265
n
113
GLU
265
A
VAL
266
n
114
VAL
266
A
ILE
267
n
115
ILE
267
A
MET
268
n
116
MET
268
A
LEU
269
n
117
LEU
269
A
ARG
270
n
118
ARG
270
A
SER
271
n
119
SER
271
A
ASN
272
n
120
ASN
272
A
GLN
273
n
121
GLN
273
A
SER
274
n
122
SER
274
A
PHE
275
n
123
PHE
275
A
THR
276
n
124
THR
276
A
MET
277
n
125
MET
277
A
ASP
278
n
126
ASP
278
A
n
127
279
A
n
128
280
A
n
129
281
A
n
130
282
A
n
131
283
A
n
132
284
A
n
133
285
A
SER
286
n
134
SER
286
A
GLN
287
n
135
GLN
287
A
ASP
288
n
136
ASP
288
A
TYR
289
n
137
TYR
289
A
LYS
290
n
138
LYS
290
A
TYR
291
n
139
TYR
291
A
ASP
292
n
140
ASP
292
A
VAL
293
n
141
VAL
293
A
THR
294
n
142
THR
294
A
ASP
295
n
143
ASP
295
A
VAL
296
n
144
VAL
296
A
SER
297
n
145
SER
297
A
LYS
298
n
146
LYS
298
A
ALA
299
n
147
ALA
299
A
GLY
300
n
148
GLY
300
A
HIS
301
n
149
HIS
301
A
THR
302
n
150
THR
302
A
LEU
303
n
151
LEU
303
A
GLU
304
n
152
GLU
304
A
LEU
305
n
153
LEU
305
A
ILE
306
n
154
ILE
306
A
GLU
307
n
155
GLU
307
A
PRO
308
n
156
PRO
308
A
LEU
309
n
157
LEU
309
A
ILE
310
n
158
ILE
310
A
LYS
311
n
159
LYS
311
A
PHE
312
n
160
PHE
312
A
GLN
313
n
161
GLN
313
A
VAL
314
n
162
VAL
314
A
GLY
315
n
163
GLY
315
A
LEU
316
n
164
LEU
316
A
LYS
317
n
165
LYS
317
A
LYS
318
n
166
LYS
318
A
LEU
319
n
167
LEU
319
A
ASN
320
n
168
ASN
320
A
LEU
321
n
169
LEU
321
A
HIS
322
n
170
HIS
322
A
GLU
323
n
171
GLU
323
A
GLU
324
n
172
GLU
324
A
GLU
325
n
173
GLU
325
A
HIS
326
n
174
HIS
326
A
VAL
327
n
175
VAL
327
A
LEU
328
n
176
LEU
328
A
LEU
329
n
177
LEU
329
A
MET
330
n
178
MET
330
A
ALA
331
n
179
ALA
331
A
ILE
332
n
180
ILE
332
A
CYS
333
n
181
CYS
333
A
ILE
334
n
182
ILE
334
A
VAL
335
n
183
VAL
335
A
SER
336
n
184
SER
336
A
PRO
337
n
185
PRO
337
A
ASP
338
n
186
ASP
338
A
ARG
339
n
187
ARG
339
A
PRO
340
n
188
PRO
340
A
GLY
341
n
189
GLY
341
A
VAL
342
n
190
VAL
342
A
GLN
343
n
191
GLN
343
A
ASP
344
n
192
ASP
344
A
ALA
345
n
193
ALA
345
A
LYS
346
n
194
LYS
346
A
LEU
347
n
195
LEU
347
A
VAL
348
n
196
VAL
348
A
GLU
349
n
197
GLU
349
A
ALA
350
n
198
ALA
350
A
ILE
351
n
199
ILE
351
A
GLN
352
n
200
GLN
352
A
ASP
353
n
201
ASP
353
A
ARG
354
n
202
ARG
354
A
LEU
355
n
203
LEU
355
A
SER
356
n
204
SER
356
A
ASN
357
n
205
ASN
357
A
THR
358
n
206
THR
358
A
LEU
359
n
207
LEU
359
A
GLN
360
n
208
GLN
360
A
THR
361
n
209
THR
361
A
TYR
362
n
210
TYR
362
A
ILE
363
n
211
ILE
363
A
ARG
364
n
212
ARG
364
A
CYS
365
n
213
CYS
365
A
ARG
366
n
214
ARG
366
A
HIS
367
n
215
HIS
367
A
PRO
368
n
216
PRO
368
A
PRO
369
n
217
PRO
369
A
PRO
370
n
218
PRO
370
A
GLY
371
n
219
GLY
371
A
SER
372
n
220
SER
372
A
HIS
373
n
221
HIS
373
A
GLN
374
n
222
GLN
374
A
LEU
375
n
223
LEU
375
A
TYR
376
n
224
TYR
376
A
ALA
377
n
225
ALA
377
A
LYS
378
n
226
LYS
378
A
MET
379
n
227
MET
379
A
ILE
380
n
228
ILE
380
A
GLN
381
n
229
GLN
381
A
LYS
382
n
230
LYS
382
A
LEU
383
n
231
LEU
383
A
ALA
384
n
232
ALA
384
A
ASP
385
n
233
ASP
385
A
LEU
386
n
234
LEU
386
A
ARG
387
n
235
ARG
387
A
SER
388
n
236
SER
388
A
LEU
389
n
237
LEU
389
A
ASN
390
n
238
ASN
390
A
GLU
391
n
239
GLU
391
A
GLU
392
n
240
GLU
392
A
HIS
393
n
241
HIS
393
A
SER
394
n
242
SER
394
A
LYS
395
n
243
LYS
395
A
GLN
396
n
244
GLN
396
A
TYR
397
n
245
TYR
397
A
ARG
398
n
246
ARG
398
A
SER
399
n
247
SER
399
A
LEU
400
n
248
LEU
400
A
SER
401
n
249
SER
401
A
PHE
402
n
250
PHE
402
A
GLN
403
n
251
GLN
403
A
PRO
404
n
252
PRO
404
A
GLU
405
n
253
GLU
405
A
ASN
406
n
254
ASN
406
A
SER
407
n
255
SER
407
A
MET
408
n
256
MET
408
A
LYS
409
n
257
LYS
409
A
LEU
410
n
258
LEU
410
A
THR
411
n
259
THR
411
A
PRO
412
n
260
PRO
412
A
LEU
413
n
261
LEU
413
A
VAL
414
n
262
VAL
414
A
LEU
415
n
263
LEU
415
A
GLU
416
n
264
GLU
416
A
VAL
417
n
265
VAL
417
A
PHE
418
n
266
PHE
418
A
GLY
419
n
267
GLY
419
A
ASN
420
n
268
ASN
420
A
n
269
421
A
n
270
422
A
n
271
423
A
LYS
625
n
1
LYS
625
C
ASN
626
n
2
ASN
626
C
HIS
627
n
3
HIS
627
C
PRO
628
n
4
PRO
628
C
MET
629
n
5
MET
629
C
LEU
630
n
6
LEU
630
C
MET
631
n
7
MET
631
C
ASN
632
n
8
ASN
632
C
LEU
633
n
9
LEU
633
C
LEU
634
n
10
LEU
634
C
LYS
635
n
11
LYS
635
C
n
12
636
C
n
13
637
C
software_defined_assembly
PISA
2
dimeric
author_defined_assembly
1
monomeric
1020
-10
12150
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
106
A
GLY
1
1
Y
1
A
SER
107
A
SER
2
1
Y
1
A
HIS
108
A
HIS
3
1
Y
1
A
MET
109
A
MET
4
1
Y
1
A
GLY
110
A
GLY
5
1
Y
1
A
SER
111
A
SER
6
1
Y
1
A
PRO
112
A
PRO
7
1
Y
1
A
ASN
113
A
ASN
8
1
Y
1
A
SER
114
A
SER
9
1
Y
1
A
PRO
115
A
PRO
10
1
Y
1
A
LEU
116
A
LEU
11
1
Y
1
A
LYS
117
A
LYS
12
1
Y
1
A
ASP
118
A
ASP
13
1
Y
1
A
SER
119
A
SER
14
1
Y
1
A
LEU
120
A
LEU
15
1
Y
1
A
ARG
121
A
ARG
16
1
Y
1
A
PRO
122
A
PRO
17
1
Y
1
A
ASP
160
A
ASP
55
1
Y
1
A
GLY
161
A
GLY
56
1
Y
1
A
SER
162
A
SER
57
1
Y
1
A
THR
163
A
THR
58
1
Y
1
A
GLY
164
A
GLY
59
1
Y
1
A
SER
212
A
SER
60
1
Y
1
A
VAL
213
A
VAL
61
1
Y
1
A
THR
214
A
THR
62
1
Y
1
A
LEU
215
A
LEU
63
1
Y
1
A
ASP
216
A
ASP
64
1
Y
1
A
LEU
217
A
LEU
65
1
Y
1
A
ASP
279
A
ASP
127
1
Y
1
A
MET
280
A
MET
128
1
Y
1
A
SER
281
A
SER
129
1
Y
1
A
ARG
282
A
ARG
130
1
Y
1
A
ASP
283
A
ASP
131
1
Y
1
A
CYS
284
A
CYS
132
1
Y
1
A
GLY
285
A
GLY
133
1
Y
1
A
GLU
421
A
GLU
269
1
Y
1
A
ILE
422
A
ILE
270
1
Y
1
A
SER
423
A
SER
271
1
Y
1
C
ASP
636
B
ASP
12
1
Y
1
C
ASN
637
B
ASN
13
1
Y
1
A
TYR
289
-96.75
31.19
protein.param
protein.top
water_rep.param
water.top
YI4_3.param
YI4_3.top
35.2
-12.75
0.00
-3.64
12.07
0.00
0.68
0.250
0.008
0.198
0.198
2.35
35.29
1087
10561
10.3
92.6
RANDOM
116145.05
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
2ZLC
FLAT MODEL
33.1422
0.348529
0.35
0.26
5.00
0.35
0.22
2.35
35.29
39
2035
35
0
1961
0.004
0.7
19.1
0.72
1.40
1.50
2.34
2.00
4.85
4.00
6.10
5.00
0.335
0.027
0.234
2.50
153
1419
6
9.7
84.2
24.8
2.35
50.00
3VT9
10561
1
2.35
2.43
1
data collection
HKL-2000
refinement
CNS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Crystal structures of rat VDR-LBD with W282R mutation
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
SER
125
A
SER
20
HELX_P
A
LYS
141
A
LYS
36
1
1
17
A
TYR
147
A
TYR
42
HELX_P
A
PHE
153
A
PHE
48
5
2
7
A
MET
222
A
MET
70
HELX_P
A
LYS
242
A
LYS
90
1
3
21
A
GLY
246
A
GLY
94
HELX_P
A
LEU
250
A
LEU
98
5
4
5
A
THR
251
A
THR
99
HELX_P
A
ASN
272
A
ASN
120
1
5
22
A
SER
286
A
SER
134
HELX_P
A
LYS
290
A
LYS
138
5
6
5
A
ASP
292
A
ASP
140
HELX_P
A
LYS
298
A
LYS
146
1
7
7
A
THR
302
A
THR
150
HELX_P
A
LEU
319
A
LEU
167
1
8
18
A
HIS
322
A
HIS
170
HELX_P
A
VAL
335
A
VAL
183
1
9
14
A
ASP
344
A
ASP
192
HELX_P
A
HIS
367
A
HIS
215
1
10
24
A
GLN
374
A
GLN
222
HELX_P
A
SER
401
A
SER
249
1
11
28
A
GLN
403
A
GLN
251
HELX_P
A
MET
408
A
MET
256
1
12
6
A
THR
411
A
THR
259
HELX_P
A
GLY
419
A
GLY
267
1
13
9
C
HIS
627
B
HIS
3
HELX_P
C
LEU
634
B
LEU
10
1
14
8
HORMONE RECEPTOR
Transcription, HORMONE RECEPTOR
A
PRO
369
A
PRO
217
1
A
PRO
370
A
PRO
218
-0.01
VDR_RAT
UNP
1
116
P13053
LKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSYSPRPTLSFSGNSSSSSSDLYTTSLDMMEP
SGFSNLDLNGEDSDDPSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSF
TMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRL
SNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEIS
3VT9
PDB
2
3VT9
116
423
3VT9
116
423
P13053
A
1
11
271
625
637
3VT9
625
637
3VT9
C
2
1
13
1
expression tag
GLY
106
3VT9
A
P13053
UNP
1
1
expression tag
SER
107
3VT9
A
P13053
UNP
2
1
expression tag
HIS
108
3VT9
A
P13053
UNP
3
1
expression tag
MET
109
3VT9
A
P13053
UNP
4
1
expression tag
GLY
110
3VT9
A
P13053
UNP
5
1
expression tag
SER
111
3VT9
A
P13053
UNP
6
1
expression tag
PRO
112
3VT9
A
P13053
UNP
7
1
expression tag
ASN
113
3VT9
A
P13053
UNP
8
1
expression tag
SER
114
3VT9
A
P13053
UNP
9
1
expression tag
PRO
115
3VT9
A
P13053
UNP
10
1
SER
deletion
3VT9
A
P13053
UNP
165
1
TYR
deletion
3VT9
A
P13053
UNP
166
1
SER
deletion
3VT9
A
P13053
UNP
167
1
PRO
deletion
3VT9
A
P13053
UNP
168
1
ARG
deletion
3VT9
A
P13053
UNP
169
1
PRO
deletion
3VT9
A
P13053
UNP
170
1
THR
deletion
3VT9
A
P13053
UNP
171
1
LEU
deletion
3VT9
A
P13053
UNP
172
1
SER
deletion
3VT9
A
P13053
UNP
173
1
PHE
deletion
3VT9
A
P13053
UNP
174
1
SER
deletion
3VT9
A
P13053
UNP
175
1
GLY
deletion
3VT9
A
P13053
UNP
176
1
ASN
deletion
3VT9
A
P13053
UNP
177
1
SER
deletion
3VT9
A
P13053
UNP
178
1
SER
deletion
3VT9
A
P13053
UNP
179
1
SER
deletion
3VT9
A
P13053
UNP
180
1
SER
deletion
3VT9
A
P13053
UNP
181
1
SER
deletion
3VT9
A
P13053
UNP
182
1
SER
deletion
3VT9
A
P13053
UNP
183
1
ASP
deletion
3VT9
A
P13053
UNP
184
1
LEU
deletion
3VT9
A
P13053
UNP
185
1
TYR
deletion
3VT9
A
P13053
UNP
186
1
THR
deletion
3VT9
A
P13053
UNP
187
1
THR
deletion
3VT9
A
P13053
UNP
188
1
SER
deletion
3VT9
A
P13053
UNP
189
1
LEU
deletion
3VT9
A
P13053
UNP
190
1
ASP
deletion
3VT9
A
P13053
UNP
191
1
MET
deletion
3VT9
A
P13053
UNP
192
1
MET
deletion
3VT9
A
P13053
UNP
193
1
GLU
deletion
3VT9
A
P13053
UNP
194
1
PRO
deletion
3VT9
A
P13053
UNP
195
1
SER
deletion
3VT9
A
P13053
UNP
196
1
GLY
deletion
3VT9
A
P13053
UNP
197
1
PHE
deletion
3VT9
A
P13053
UNP
198
1
SER
deletion
3VT9
A
P13053
UNP
199
1
ASN
deletion
3VT9
A
P13053
UNP
200
1
LEU
deletion
3VT9
A
P13053
UNP
201
1
ASP
deletion
3VT9
A
P13053
UNP
202
1
LEU
deletion
3VT9
A
P13053
UNP
203
1
ASN
deletion
3VT9
A
P13053
UNP
204
1
GLY
deletion
3VT9
A
P13053
UNP
205
1
GLU
deletion
3VT9
A
P13053
UNP
206
1
ASP
deletion
3VT9
A
P13053
UNP
207
1
SER
deletion
3VT9
A
P13053
UNP
208
1
ASP
deletion
3VT9
A
P13053
UNP
209
1
ASP
deletion
3VT9
A
P13053
UNP
210
1
PRO
deletion
3VT9
A
P13053
UNP
211
1
TRP
engineered mutation
ARG
282
3VT9
A
P13053
UNP
282
130
BINDING SITE FOR RESIDUE YI4 A 500
A
YI4
500
Software
16
A
TYR
143
A
TYR
38
16
1_555
A
ASP
144
A
ASP
39
16
1_555
A
TYR
147
A
TYR
42
16
1_555
A
PHE
150
A
PHE
45
16
1_555
A
LEU
223
A
LEU
71
16
1_555
A
VAL
230
A
VAL
78
16
1_555
A
TYR
232
A
TYR
80
16
1_555
A
SER
233
A
SER
81
16
1_555
A
ARG
270
A
ARG
118
16
1_555
A
SER
271
A
SER
119
16
1_555
A
SER
274
A
SER
122
16
1_555
A
VAL
296
A
VAL
144
16
1_555
A
HIS
301
A
HIS
149
16
1_555
A
LEU
305
A
LEU
153
16
1_555
A
HIS
393
A
HIS
241
16
1_555
A
HOH
602
D
HOH
16
1_555
5
C 1 2 1