0.009820 0.000000 0.000000 0.000000 0.025558 0.000000 0.000000 0.000000 0.014854 0.00000 0.00000 0.00000 Niwa, H. Handa, N. Tomabechi, Y. Honda, K. Toyama, M. Ohsawa, N. Shirouzu, M. Kagechika, H. Hirano, T. Umehara, T. Yokoyama, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 101.836 39.126 67.322 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C22 H38 N8 O5 494.588 5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}-5'-deoxyadenosine non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N O N 184 N C N 185 S C N 186 N N N 187 N C N 188 N C N 189 N N N 190 N C N 191 N C N 192 N N N 193 N C N 194 N C N 195 N C N 196 N C N 197 N C N 198 N C N 199 N C N 200 R C N 201 N O N 202 R C N 203 R C N 204 N O N 205 S C N 206 N O Y 207 N N Y 208 N C Y 209 N N Y 210 N C Y 211 N C N 212 N N Y 213 N C Y 214 N N Y 215 N C Y 216 N N N 217 N O N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N C N 262 N C N 263 N C N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C N 283 N C N 284 N C N 285 N C N 286 N N N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C N 308 N C N 309 N S N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C N 351 N C N 352 N C N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C N 368 N O N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 R C N 382 N O N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N N Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N N N 422 S C N 423 N C N 424 N O N 425 N C Y 426 N C Y 427 N C Y 428 N C Y 429 N C Y 430 N C Y 431 N C N 432 N O N 433 N O N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N N N 446 S C N 447 N C N 448 N O N 449 N C N 450 N C N 451 N C N 452 N O N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing Y 173 N doub Y 174 N sing N 175 N sing Y 176 N sing Y 177 N doub Y 178 N doub Y 179 N sing Y 180 N sing Y 181 N sing Y 182 N doub N 183 N sing Y 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing Y 323 N doub Y 324 N sing Y 325 N sing N 326 N sing Y 327 N doub N 328 N sing Y 329 N doub N 330 N sing Y 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing Y 392 N doub Y 393 N sing Y 394 N sing N 395 N sing Y 396 N doub Y 397 N sing Y 398 N sing N 399 N sing Y 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing Y 420 N doub Y 421 N sing Y 422 N sing N 423 N sing Y 424 N doub N 425 N sing Y 426 N doub N 427 N sing Y 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N doub N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 69 595 602 10.1107/S0907444912052092 23519668 Structures of histone methyltransferase SET7/9 in complexes with adenosylmethionine derivatives 2013 10.2210/pdb3vv0/pdb pdb_00003vv0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-01-24 MARRESEARCH Si 111 SINGLE WAVELENGTH M x-ray 1 1.0 BL32XU SPring-8 SYNCHROTRON SPRING-8 BEAMLINE BL32XU 29083.244 Histone-lysine N-methyltransferase SETD7 2.1.1.43 residues 111-366 1 man polymer 494.588 5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}-5'-deoxyadenosine 1 syn non-polymer 18.015 water 119 nat water Histone H3-K4 methyltransferase SETD7, H3-K4-HMTase SETD7, Lysine N-methyltransferase 7, SET domain-containing protein 7, SET7/9 no no GSSGSSGKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFE LMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALN GNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPG KSGPEAPEWYQVELKAFQATQQK GSSGSSGKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFE LMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALN GNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPG KSGPEAPEWYQVELKAFQATQQK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample SETD7, KIAA1717, KMT7, SET7, SET9 9606 Homo sapiens CELL-FREE SYNTHESIS plasmid PX100709-08 1 2.31 46.66 VAPOR DIFFUSION, HANGING DROP 0.1M Tris-HCl pH8.3-8.5, 28-30% PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 277K 8.3-8.5 277 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Database references Structure summary Data collection Database references Derived calculations Refinement description 1 0 2013-03-27 1 1 2014-04-30 1 2 2016-09-28 1 3 2023-11-08 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBJ Y PDBJ 2012-07-10 REL REL KH3 5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}-5'-deoxyadenosine HOH water 1N6A PDB experimental model KH3 401 2 KH3 KH3 401 A HOH 1 3 HOH HOH 501 A HOH 2 3 HOH HOH 502 A HOH 3 3 HOH HOH 503 A HOH 4 3 HOH HOH 504 A HOH 5 3 HOH HOH 505 A HOH 6 3 HOH HOH 506 A HOH 7 3 HOH HOH 507 A HOH 8 3 HOH HOH 508 A HOH 9 3 HOH HOH 509 A HOH 10 3 HOH HOH 510 A HOH 11 3 HOH HOH 511 A HOH 12 3 HOH HOH 512 A HOH 13 3 HOH HOH 513 A HOH 14 3 HOH HOH 514 A HOH 15 3 HOH HOH 515 A HOH 16 3 HOH HOH 516 A HOH 17 3 HOH HOH 517 A HOH 18 3 HOH HOH 518 A HOH 19 3 HOH HOH 519 A HOH 20 3 HOH HOH 520 A HOH 21 3 HOH HOH 521 A HOH 22 3 HOH HOH 522 A HOH 23 3 HOH HOH 523 A HOH 24 3 HOH HOH 524 A HOH 25 3 HOH HOH 525 A HOH 26 3 HOH HOH 526 A HOH 27 3 HOH HOH 527 A HOH 28 3 HOH HOH 528 A HOH 29 3 HOH HOH 529 A HOH 30 3 HOH HOH 530 A HOH 31 3 HOH HOH 531 A HOH 32 3 HOH HOH 532 A HOH 33 3 HOH HOH 533 A HOH 34 3 HOH HOH 534 A HOH 35 3 HOH HOH 535 A HOH 36 3 HOH HOH 536 A HOH 37 3 HOH HOH 537 A HOH 38 3 HOH HOH 538 A HOH 39 3 HOH HOH 539 A HOH 40 3 HOH HOH 540 A HOH 41 3 HOH HOH 541 A HOH 42 3 HOH HOH 542 A HOH 43 3 HOH HOH 543 A HOH 44 3 HOH HOH 544 A HOH 45 3 HOH HOH 545 A HOH 46 3 HOH HOH 546 A HOH 47 3 HOH HOH 547 A HOH 48 3 HOH HOH 548 A HOH 49 3 HOH HOH 549 A HOH 50 3 HOH HOH 550 A HOH 51 3 HOH HOH 551 A HOH 52 3 HOH HOH 552 A HOH 53 3 HOH HOH 553 A HOH 54 3 HOH HOH 554 A HOH 55 3 HOH HOH 555 A HOH 56 3 HOH HOH 556 A HOH 57 3 HOH HOH 557 A HOH 58 3 HOH HOH 558 A HOH 59 3 HOH HOH 559 A HOH 60 3 HOH HOH 560 A HOH 61 3 HOH HOH 561 A HOH 62 3 HOH HOH 562 A HOH 63 3 HOH HOH 563 A HOH 64 3 HOH HOH 564 A HOH 65 3 HOH HOH 565 A HOH 66 3 HOH HOH 566 A HOH 67 3 HOH HOH 567 A HOH 68 3 HOH HOH 568 A HOH 69 3 HOH HOH 569 A HOH 70 3 HOH HOH 570 A HOH 71 3 HOH HOH 571 A HOH 72 3 HOH HOH 572 A HOH 73 3 HOH HOH 573 A HOH 74 3 HOH HOH 574 A HOH 75 3 HOH HOH 575 A HOH 76 3 HOH HOH 576 A HOH 77 3 HOH HOH 577 A HOH 78 3 HOH HOH 578 A HOH 79 3 HOH HOH 579 A HOH 80 3 HOH HOH 580 A HOH 81 3 HOH HOH 581 A HOH 82 3 HOH HOH 582 A HOH 83 3 HOH HOH 583 A HOH 84 3 HOH HOH 584 A HOH 85 3 HOH HOH 585 A HOH 86 3 HOH HOH 586 A HOH 87 3 HOH HOH 587 A HOH 88 3 HOH HOH 588 A HOH 89 3 HOH HOH 589 A HOH 90 3 HOH HOH 590 A HOH 91 3 HOH HOH 591 A HOH 92 3 HOH HOH 592 A HOH 93 3 HOH HOH 593 A HOH 94 3 HOH HOH 594 A HOH 95 3 HOH HOH 595 A HOH 96 3 HOH HOH 596 A HOH 97 3 HOH HOH 597 A HOH 98 3 HOH HOH 598 A HOH 99 3 HOH HOH 599 A HOH 100 3 HOH HOH 600 A HOH 101 3 HOH HOH 601 A HOH 102 3 HOH HOH 602 A HOH 103 3 HOH HOH 603 A HOH 104 3 HOH HOH 604 A HOH 105 3 HOH HOH 605 A HOH 106 3 HOH HOH 606 A HOH 107 3 HOH HOH 607 A HOH 108 3 HOH HOH 608 A HOH 109 3 HOH HOH 609 A HOH 110 3 HOH HOH 610 A HOH 111 3 HOH HOH 611 A HOH 112 3 HOH HOH 612 A HOH 113 3 HOH HOH 613 A HOH 114 3 HOH HOH 614 A HOH 115 3 HOH HOH 615 A HOH 116 3 HOH HOH 616 A HOH 117 3 HOH HOH 617 A HOH 118 3 HOH HOH 618 A HOH 119 3 HOH HOH 619 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 111 A n 9 112 A n 10 113 A n 11 114 A n 12 115 A HIS 116 n 13 HIS 116 A GLY 117 n 14 GLY 117 A VAL 118 n 15 VAL 118 A CYS 119 n 16 CYS 119 A TRP 120 n 17 TRP 120 A ILE 121 n 18 ILE 121 A TYR 122 n 19 TYR 122 A TYR 123 n 20 TYR 123 A PRO 124 n 21 PRO 124 A ASP 125 n 22 ASP 125 A GLY 126 n 23 GLY 126 A GLY 127 n 24 GLY 127 A SER 128 n 25 SER 128 A LEU 129 n 26 LEU 129 A VAL 130 n 27 VAL 130 A GLY 131 n 28 GLY 131 A GLU 132 n 29 GLU 132 A VAL 133 n 30 VAL 133 A ASN 134 n 31 ASN 134 A GLU 135 n 32 GLU 135 A ASP 136 n 33 ASP 136 A GLY 137 n 34 GLY 137 A GLU 138 n 35 GLU 138 A MET 139 n 36 MET 139 A THR 140 n 37 THR 140 A GLY 141 n 38 GLY 141 A GLU 142 n 39 GLU 142 A LYS 143 n 40 LYS 143 A ILE 144 n 41 ILE 144 A ALA 145 n 42 ALA 145 A TYR 146 n 43 TYR 146 A VAL 147 n 44 VAL 147 A TYR 148 n 45 TYR 148 A PRO 149 n 46 PRO 149 A ASP 150 n 47 ASP 150 A GLU 151 n 48 GLU 151 A ARG 152 n 49 ARG 152 A THR 153 n 50 THR 153 A ALA 154 n 51 ALA 154 A LEU 155 n 52 LEU 155 A TYR 156 n 53 TYR 156 A GLY 157 n 54 GLY 157 A LYS 158 n 55 LYS 158 A PHE 159 n 56 PHE 159 A ILE 160 n 57 ILE 160 A ASP 161 n 58 ASP 161 A GLY 162 n 59 GLY 162 A GLU 163 n 60 GLU 163 A MET 164 n 61 MET 164 A ILE 165 n 62 ILE 165 A GLU 166 n 63 GLU 166 A GLY 167 n 64 GLY 167 A LYS 168 n 65 LYS 168 A LEU 169 n 66 LEU 169 A ALA 170 n 67 ALA 170 A THR 171 n 68 THR 171 A LEU 172 n 69 LEU 172 A MET 173 n 70 MET 173 A SER 174 n 71 SER 174 A THR 175 n 72 THR 175 A GLU 176 n 73 GLU 176 A GLU 177 n 74 GLU 177 A GLY 178 n 75 GLY 178 A ARG 179 n 76 ARG 179 A PRO 180 n 77 PRO 180 A HIS 181 n 78 HIS 181 A PHE 182 n 79 PHE 182 A GLU 183 n 80 GLU 183 A LEU 184 n 81 LEU 184 A MET 185 n 82 MET 185 A PRO 186 n 83 PRO 186 A GLY 187 n 84 GLY 187 A ASN 188 n 85 ASN 188 A SER 189 n 86 SER 189 A VAL 190 n 87 VAL 190 A TYR 191 n 88 TYR 191 A HIS 192 n 89 HIS 192 A PHE 193 n 90 PHE 193 A ASP 194 n 91 ASP 194 A LYS 195 n 92 LYS 195 A SER 196 n 93 SER 196 A THR 197 n 94 THR 197 A SER 198 n 95 SER 198 A SER 199 n 96 SER 199 A CYS 200 n 97 CYS 200 A ILE 201 n 98 ILE 201 A SER 202 n 99 SER 202 A THR 203 n 100 THR 203 A ASN 204 n 101 ASN 204 A ALA 205 n 102 ALA 205 A LEU 206 n 103 LEU 206 A LEU 207 n 104 LEU 207 A PRO 208 n 105 PRO 208 A ASP 209 n 106 ASP 209 A PRO 210 n 107 PRO 210 A TYR 211 n 108 TYR 211 A GLU 212 n 109 GLU 212 A SER 213 n 110 SER 213 A GLU 214 n 111 GLU 214 A ARG 215 n 112 ARG 215 A VAL 216 n 113 VAL 216 A TYR 217 n 114 TYR 217 A VAL 218 n 115 VAL 218 A ALA 219 n 116 ALA 219 A GLU 220 n 117 GLU 220 A SER 221 n 118 SER 221 A LEU 222 n 119 LEU 222 A ILE 223 n 120 ILE 223 A SER 224 n 121 SER 224 A SER 225 n 122 SER 225 A ALA 226 n 123 ALA 226 A GLY 227 n 124 GLY 227 A GLU 228 n 125 GLU 228 A GLY 229 n 126 GLY 229 A LEU 230 n 127 LEU 230 A PHE 231 n 128 PHE 231 A SER 232 n 129 SER 232 A LYS 233 n 130 LYS 233 A VAL 234 n 131 VAL 234 A ALA 235 n 132 ALA 235 A VAL 236 n 133 VAL 236 A GLY 237 n 134 GLY 237 A PRO 238 n 135 PRO 238 A ASN 239 n 136 ASN 239 A THR 240 n 137 THR 240 A VAL 241 n 138 VAL 241 A MET 242 n 139 MET 242 A SER 243 n 140 SER 243 A PHE 244 n 141 PHE 244 A TYR 245 n 142 TYR 245 A ASN 246 n 143 ASN 246 A GLY 247 n 144 GLY 247 A VAL 248 n 145 VAL 248 A ARG 249 n 146 ARG 249 A ILE 250 n 147 ILE 250 A THR 251 n 148 THR 251 A HIS 252 n 149 HIS 252 A GLN 253 n 150 GLN 253 A GLU 254 n 151 GLU 254 A VAL 255 n 152 VAL 255 A ASP 256 n 153 ASP 256 A SER 257 n 154 SER 257 A ARG 258 n 155 ARG 258 A ASP 259 n 156 ASP 259 A TRP 260 n 157 TRP 260 A ALA 261 n 158 ALA 261 A LEU 262 n 159 LEU 262 A ASN 263 n 160 ASN 263 A GLY 264 n 161 GLY 264 A ASN 265 n 162 ASN 265 A THR 266 n 163 THR 266 A LEU 267 n 164 LEU 267 A SER 268 n 165 SER 268 A LEU 269 n 166 LEU 269 A ASP 270 n 167 ASP 270 A GLU 271 n 168 GLU 271 A GLU 272 n 169 GLU 272 A THR 273 n 170 THR 273 A VAL 274 n 171 VAL 274 A ILE 275 n 172 ILE 275 A ASP 276 n 173 ASP 276 A VAL 277 n 174 VAL 277 A PRO 278 n 175 PRO 278 A GLU 279 n 176 GLU 279 A PRO 280 n 177 PRO 280 A TYR 281 n 178 TYR 281 A ASN 282 n 179 ASN 282 A HIS 283 n 180 HIS 283 A VAL 284 n 181 VAL 284 A SER 285 n 182 SER 285 A LYS 286 n 183 LYS 286 A TYR 287 n 184 TYR 287 A CYS 288 n 185 CYS 288 A ALA 289 n 186 ALA 289 A SER 290 n 187 SER 290 A LEU 291 n 188 LEU 291 A GLY 292 n 189 GLY 292 A HIS 293 n 190 HIS 293 A LYS 294 n 191 LYS 294 A ALA 295 n 192 ALA 295 A ASN 296 n 193 ASN 296 A HIS 297 n 194 HIS 297 A SER 298 n 195 SER 298 A PHE 299 n 196 PHE 299 A THR 300 n 197 THR 300 A PRO 301 n 198 PRO 301 A ASN 302 n 199 ASN 302 A CYS 303 n 200 CYS 303 A ILE 304 n 201 ILE 304 A TYR 305 n 202 TYR 305 A ASP 306 n 203 ASP 306 A MET 307 n 204 MET 307 A PHE 308 n 205 PHE 308 A VAL 309 n 206 VAL 309 A HIS 310 n 207 HIS 310 A PRO 311 n 208 PRO 311 A ARG 312 n 209 ARG 312 A PHE 313 n 210 PHE 313 A GLY 314 n 211 GLY 314 A PRO 315 n 212 PRO 315 A ILE 316 n 213 ILE 316 A LYS 317 n 214 LYS 317 A CYS 318 n 215 CYS 318 A ILE 319 n 216 ILE 319 A ARG 320 n 217 ARG 320 A THR 321 n 218 THR 321 A LEU 322 n 219 LEU 322 A ARG 323 n 220 ARG 323 A ALA 324 n 221 ALA 324 A VAL 325 n 222 VAL 325 A GLU 326 n 223 GLU 326 A ALA 327 n 224 ALA 327 A ASP 328 n 225 ASP 328 A GLU 329 n 226 GLU 329 A GLU 330 n 227 GLU 330 A LEU 331 n 228 LEU 331 A THR 332 n 229 THR 332 A VAL 333 n 230 VAL 333 A ALA 334 n 231 ALA 334 A TYR 335 n 232 TYR 335 A GLY 336 n 233 GLY 336 A TYR 337 n 234 TYR 337 A n 235 338 A n 236 339 A n 237 340 A n 238 341 A n 239 342 A n 240 343 A n 241 344 A n 242 345 A n 243 346 A n 244 347 A n 245 348 A n 246 349 A PRO 350 n 247 PRO 350 A GLU 351 n 248 GLU 351 A TRP 352 n 249 TRP 352 A TYR 353 n 250 TYR 353 A GLN 354 n 251 GLN 354 A VAL 355 n 252 VAL 355 A GLU 356 n 253 GLU 356 A LEU 357 n 254 LEU 357 A LYS 358 n 255 LYS 358 A ALA 359 n 256 ALA 359 A PHE 360 n 257 PHE 360 A GLN 361 n 258 GLN 361 A ALA 362 n 259 ALA 362 A n 260 363 A n 261 364 A n 262 365 A n 263 366 A 5.5709 0.1637 0.1149 3.7791 0.9311 2.2403 0.2335 -0.4399 0.5021 0.3797 0.1292 -0.8566 0.0363 0.6008 -0.1758 0.1956 -0.0325 -0.0014 0.3288 -0.0572 0.4201 refined -4.7059 7.0455 -13.1603 X-RAY DIFFRACTION 2.5908 -0.8420 0.2514 3.4538 0.1409 1.8329 0.1759 -0.1584 0.6001 -0.3152 -0.3065 -0.0813 -0.0548 -0.0040 -0.0240 0.2045 0.0102 0.0766 0.1131 -0.0018 0.1440 refined -18.4616 10.1522 -20.9854 X-RAY DIFFRACTION 1.3671 -0.3004 0.0251 1.4513 -1.3274 1.9884 -0.0943 -0.3386 -0.2484 0.3779 -0.1224 0.7965 0.4983 -0.7880 -0.0665 0.3810 -0.1829 0.2413 0.5645 -0.0955 0.3648 refined -33.2385 0.5667 -8.8511 X-RAY DIFFRACTION 2.8211 -0.2512 0.2521 4.1955 -0.5423 2.9850 0.1877 -0.4540 -0.0329 0.2429 -0.2118 0.8403 0.2266 -0.3648 0.0269 0.2425 -0.0550 0.0581 0.3153 -0.0412 0.2749 refined -28.6302 2.0572 -15.8179 X-RAY DIFFRACTION 3.4599 -0.3936 -0.6536 3.9857 0.3146 3.1895 -0.1123 -0.0134 -0.3302 -0.8898 -0.3927 1.6709 0.2563 -0.9134 -0.1710 0.4806 -0.0716 -0.1488 0.4134 -0.1469 0.6559 refined -36.1576 -7.1519 -26.0566 X-RAY DIFFRACTION A 116 A 162 X-RAY DIFFRACTION 1 chain 'A' and (resseq 116:162) A 163 A 240 X-RAY DIFFRACTION 2 chain 'A' and (resseq 163:240) A 241 A 262 X-RAY DIFFRACTION 3 chain 'A' and (resseq 241:262) A 263 A 321 X-RAY DIFFRACTION 4 chain 'A' and (resseq 263:321) A 322 A 362 X-RAY DIFFRACTION 5 chain 'A' and (resseq 322:362) author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 121 A N ILE 18 A O LEU 129 A O LEU 26 A N SER 128 A N SER 25 A O VAL 147 A O VAL 44 A N ILE 144 A N ILE 41 A O GLY 157 A O GLY 54 A N TYR 156 A N TYR 53 A O LYS 168 A O LYS 65 A N SER 174 A N SER 71 A O HIS 181 A O HIS 78 A N ILE 121 A N ILE 18 A O LEU 129 A O LEU 26 A N SER 128 A N SER 25 A O VAL 147 A O VAL 44 A N ILE 144 A N ILE 41 A O GLY 157 A O GLY 54 A N TYR 156 A N TYR 53 A O LYS 168 A O LYS 65 A N GLY 167 A N GLY 64 A O TYR 191 A O TYR 88 A N ALA 219 A N ALA 116 A O GLY 229 A O GLY 126 A N LEU 230 A N LEU 127 A O LEU 331 A O LEU 228 A O VAL 333 A O VAL 230 A N ASN 296 A N ASN 193 A N MET 242 A N MET 139 A O ILE 319 A O ILE 216 A O ILE 316 A O ILE 213 A N PHE 308 A N PHE 205 A N ILE 250 A N ILE 147 A O VAL 274 A O VAL 171 A O ILE 275 A O ILE 172 A N LEU 267 A N LEU 164 1 A GLY 1 A GLY 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A SER 3 A SER 3 1 Y 1 A GLY 4 A GLY 4 1 Y 1 A SER 5 A SER 5 1 Y 1 A SER 6 A SER 6 1 Y 1 A GLY 7 A GLY 7 1 Y 1 A LYS 111 A LYS 8 1 Y 1 A ASP 112 A ASP 9 1 Y 1 A ASN 113 A ASN 10 1 Y 1 A ILE 114 A ILE 11 1 Y 1 A ARG 115 A ARG 12 1 Y 1 A ASP 338 A ASP 235 1 Y 1 A HIS 339 A HIS 236 1 Y 1 A SER 340 A SER 237 1 Y 1 A PRO 341 A PRO 238 1 Y 1 A PRO 342 A PRO 239 1 Y 1 A GLY 343 A GLY 240 1 Y 1 A LYS 344 A LYS 241 1 Y 1 A SER 345 A SER 242 1 Y 1 A GLY 346 A GLY 243 1 Y 1 A PRO 347 A PRO 244 1 Y 1 A GLU 348 A GLU 245 1 Y 1 A ALA 349 A ALA 246 1 Y 1 A THR 363 A THR 260 1 Y 1 A GLN 364 A GLN 261 1 Y 1 A GLN 365 A GLN 262 1 Y 1 A LYS 366 A LYS 263 1 Y 1 A ARG 152 -140.35 -47.94 1 A ASP 194 -146.76 53.82 1 A THR 197 -115.15 -168.78 1 A SER 202 -176.08 147.38 119.320 47.0282 17.770 6.6979 -0.0000 -0.0000 -5.9808 -0.0000 -0.7171 0.2318 0.1863 0.1888 2.001 28.176 1120 18802 5.96 99.86 1.000 1.000 0.22 1 1.33 MOLECULAR REPLACEMENT 20.6300 0.86 1.10 1n6a ML FLAT BULK SOLVENT MODEL 60.860 0.400 2.001 28.176 119 2002 35 0 1848 0.008 1934 1.084 2628 14.435 702 0.073 281 0.004 338 0.2917 0.2357 2.0922 155 2126 8 99.00 0.2645 0.2121 2.2025 142 2153 8 100.00 0.2488 0.2002 2.3404 135 2184 8 100.00 0.2699 0.1907 2.5210 136 2193 8 100.00 0.2330 0.1973 2.7745 152 2187 8 100.00 0.2695 0.1967 3.1756 128 2206 8 100.00 0.2169 0.1699 3.9990 134 2258 8 100.00 0.1997 0.1773 28.1793 138 2375 8 100.00 33.370 2.00 50.0 3VV0 18855 -3.0 0.081 1 25.7 7.0 100 2.00 2.07 2.8 0.718 1 6.7 100 data collection HKL-2000 phasing PHASER refinement PHENIX (phenix.refine: 1.7.3_928) data reduction HKL-2000 data scaling HKL-2000 Crystal structure of histone methyltransferase SET7/9 in complex with DAAM-3 1 N N 2 N N 3 N N A ASP 209 A ASP 106 HELX_P A GLU 214 A GLU 111 1 1 6 A THR 251 A THR 148 HELX_P A SER 257 A SER 154 1 2 7 A ASP 259 A ASP 156 HELX_P A ASN 263 A ASN 160 5 3 5 A LEU 291 A LEU 188 HELX_P A ALA 295 A ALA 192 5 4 5 A GLU 351 A GLU 248 HELX_P A ALA 362 A ALA 259 1 5 12 TRANSFERASE/TRANSFERASE INHIBITOR SET domain, transferase, adenosylmethionine binding, TRANSFERASE-TRANSFERASE INHIBITOR complex A GLU 279 A GLU 176 1 A PRO 280 A PRO 177 1.14 SETD7_HUMAN UNP 1 111 Q8WTS6 KDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSV YHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLD EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAP EWYQVELKAFQATQQK 111 366 3VV0 111 366 Q8WTS6 A 1 8 263 1 expression tag GLY 1 3VV0 A Q8WTS6 UNP 1 1 expression tag SER 2 3VV0 A Q8WTS6 UNP 2 1 expression tag SER 3 3VV0 A Q8WTS6 UNP 3 1 expression tag GLY 4 3VV0 A Q8WTS6 UNP 4 1 expression tag SER 5 3VV0 A Q8WTS6 UNP 5 1 expression tag SER 6 3VV0 A Q8WTS6 UNP 6 1 expression tag GLY 7 3VV0 A Q8WTS6 UNP 7 6 6 4 3 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 118 A VAL 15 A TYR 122 A TYR 19 A SER 128 A SER 25 A GLU 132 A GLU 29 A GLY 141 A GLY 38 A VAL 147 A VAL 44 A THR 153 A THR 50 A ILE 160 A ILE 57 A GLU 163 A GLU 60 A GLU 176 A GLU 73 A ARG 179 A ARG 76 A LEU 184 A LEU 81 A VAL 118 A VAL 15 A TYR 122 A TYR 19 A SER 128 A SER 25 A GLU 132 A GLU 29 A GLY 141 A GLY 38 A VAL 147 A VAL 44 A THR 153 A THR 50 A ILE 160 A ILE 57 A GLU 163 A GLU 60 A GLU 176 A GLU 73 A VAL 190 A VAL 87 A TYR 191 A TYR 88 A VAL 216 A VAL 113 A GLU 220 A GLU 117 A GLU 228 A GLU 125 A SER 232 A SER 129 A GLU 330 A GLU 227 A VAL 333 A VAL 230 A ASN 296 A ASN 193 A HIS 297 A HIS 194 A VAL 241 A VAL 138 A TYR 245 A TYR 142 A GLY 314 A GLY 211 A THR 321 A THR 218 A CYS 303 A CYS 200 A HIS 310 A HIS 207 A VAL 248 A VAL 145 A ILE 250 A ILE 147 A VAL 274 A VAL 171 A ASP 276 A ASP 173 A LEU 267 A LEU 164 A SER 268 A SER 165 BINDING SITE FOR RESIDUE KH3 A 401 A KH3 401 Software 17 A ILE 223 A ILE 120 17 1_555 A ALA 226 A ALA 123 17 1_555 A GLU 228 A GLU 125 17 1_555 A TYR 245 A TYR 142 17 1_555 A GLY 264 A GLY 161 17 1_555 A ASN 265 A ASN 162 17 1_555 A THR 266 A THR 163 17 1_555 A LEU 267 A LEU 164 17 1_555 A HIS 293 A HIS 190 17 1_555 A LYS 294 A LYS 191 17 1_555 A ASN 296 A ASN 193 17 1_555 A HIS 297 A HIS 194 17 1_555 A TYR 305 A TYR 202 17 1_555 A TYR 335 A TYR 232 17 1_555 A TRP 352 A TRP 249 17 1_555 A GLU 356 A GLU 253 17 1_555 A HOH 606 C HOH 17 1_555 18 P 21 21 2