0.009820
0.000000
0.000000
0.000000
0.025558
0.000000
0.000000
0.000000
0.014854
0.00000
0.00000
0.00000
Niwa, H.
Handa, N.
Tomabechi, Y.
Honda, K.
Toyama, M.
Ohsawa, N.
Shirouzu, M.
Kagechika, H.
Hirano, T.
Umehara, T.
Yokoyama, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
101.836
39.126
67.322
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C22 H38 N8 O5
494.588
5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}-5'-deoxyadenosine
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
O
N
184
N
C
N
185
S
C
N
186
N
N
N
187
N
C
N
188
N
C
N
189
N
N
N
190
N
C
N
191
N
C
N
192
N
N
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
R
C
N
201
N
O
N
202
R
C
N
203
R
C
N
204
N
O
N
205
S
C
N
206
N
O
Y
207
N
N
Y
208
N
C
Y
209
N
N
Y
210
N
C
Y
211
N
C
N
212
N
N
Y
213
N
C
Y
214
N
N
Y
215
N
C
Y
216
N
N
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
N
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
S
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
N
368
N
O
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
R
C
N
382
N
O
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
N
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
N
432
N
O
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
N
C
N
450
N
C
N
451
N
C
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
doub
Y
174
N
sing
N
175
N
sing
Y
176
N
sing
Y
177
N
doub
Y
178
N
doub
Y
179
N
sing
Y
180
N
sing
Y
181
N
sing
Y
182
N
doub
N
183
N
sing
Y
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
69
595
602
10.1107/S0907444912052092
23519668
Structures of histone methyltransferase SET7/9 in complexes with adenosylmethionine derivatives
2013
10.2210/pdb3vv0/pdb
pdb_00003vv0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-01-24
MARRESEARCH
Si 111
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL32XU
SPring-8
SYNCHROTRON
SPRING-8 BEAMLINE BL32XU
29083.244
Histone-lysine N-methyltransferase SETD7
2.1.1.43
residues 111-366
1
man
polymer
494.588
5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}-5'-deoxyadenosine
1
syn
non-polymer
18.015
water
119
nat
water
Histone H3-K4 methyltransferase SETD7, H3-K4-HMTase SETD7, Lysine N-methyltransferase 7, SET domain-containing protein 7, SET7/9
no
no
GSSGSSGKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFE
LMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALN
GNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPG
KSGPEAPEWYQVELKAFQATQQK
GSSGSSGKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFE
LMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALN
GNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPG
KSGPEAPEWYQVELKAFQATQQK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SETD7, KIAA1717, KMT7, SET7, SET9
9606
Homo sapiens
CELL-FREE SYNTHESIS
plasmid
PX100709-08
1
2.31
46.66
VAPOR DIFFUSION, HANGING DROP
0.1M Tris-HCl pH8.3-8.5, 28-30% PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 277K
8.3-8.5
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Structure summary
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-03-27
1
1
2014-04-30
1
2
2016-09-28
1
3
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2012-07-10
REL
REL
KH3
5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}-5'-deoxyadenosine
HOH
water
1N6A
PDB
experimental model
KH3
401
2
KH3
KH3
401
A
HOH
1
3
HOH
HOH
501
A
HOH
2
3
HOH
HOH
502
A
HOH
3
3
HOH
HOH
503
A
HOH
4
3
HOH
HOH
504
A
HOH
5
3
HOH
HOH
505
A
HOH
6
3
HOH
HOH
506
A
HOH
7
3
HOH
HOH
507
A
HOH
8
3
HOH
HOH
508
A
HOH
9
3
HOH
HOH
509
A
HOH
10
3
HOH
HOH
510
A
HOH
11
3
HOH
HOH
511
A
HOH
12
3
HOH
HOH
512
A
HOH
13
3
HOH
HOH
513
A
HOH
14
3
HOH
HOH
514
A
HOH
15
3
HOH
HOH
515
A
HOH
16
3
HOH
HOH
516
A
HOH
17
3
HOH
HOH
517
A
HOH
18
3
HOH
HOH
518
A
HOH
19
3
HOH
HOH
519
A
HOH
20
3
HOH
HOH
520
A
HOH
21
3
HOH
HOH
521
A
HOH
22
3
HOH
HOH
522
A
HOH
23
3
HOH
HOH
523
A
HOH
24
3
HOH
HOH
524
A
HOH
25
3
HOH
HOH
525
A
HOH
26
3
HOH
HOH
526
A
HOH
27
3
HOH
HOH
527
A
HOH
28
3
HOH
HOH
528
A
HOH
29
3
HOH
HOH
529
A
HOH
30
3
HOH
HOH
530
A
HOH
31
3
HOH
HOH
531
A
HOH
32
3
HOH
HOH
532
A
HOH
33
3
HOH
HOH
533
A
HOH
34
3
HOH
HOH
534
A
HOH
35
3
HOH
HOH
535
A
HOH
36
3
HOH
HOH
536
A
HOH
37
3
HOH
HOH
537
A
HOH
38
3
HOH
HOH
538
A
HOH
39
3
HOH
HOH
539
A
HOH
40
3
HOH
HOH
540
A
HOH
41
3
HOH
HOH
541
A
HOH
42
3
HOH
HOH
542
A
HOH
43
3
HOH
HOH
543
A
HOH
44
3
HOH
HOH
544
A
HOH
45
3
HOH
HOH
545
A
HOH
46
3
HOH
HOH
546
A
HOH
47
3
HOH
HOH
547
A
HOH
48
3
HOH
HOH
548
A
HOH
49
3
HOH
HOH
549
A
HOH
50
3
HOH
HOH
550
A
HOH
51
3
HOH
HOH
551
A
HOH
52
3
HOH
HOH
552
A
HOH
53
3
HOH
HOH
553
A
HOH
54
3
HOH
HOH
554
A
HOH
55
3
HOH
HOH
555
A
HOH
56
3
HOH
HOH
556
A
HOH
57
3
HOH
HOH
557
A
HOH
58
3
HOH
HOH
558
A
HOH
59
3
HOH
HOH
559
A
HOH
60
3
HOH
HOH
560
A
HOH
61
3
HOH
HOH
561
A
HOH
62
3
HOH
HOH
562
A
HOH
63
3
HOH
HOH
563
A
HOH
64
3
HOH
HOH
564
A
HOH
65
3
HOH
HOH
565
A
HOH
66
3
HOH
HOH
566
A
HOH
67
3
HOH
HOH
567
A
HOH
68
3
HOH
HOH
568
A
HOH
69
3
HOH
HOH
569
A
HOH
70
3
HOH
HOH
570
A
HOH
71
3
HOH
HOH
571
A
HOH
72
3
HOH
HOH
572
A
HOH
73
3
HOH
HOH
573
A
HOH
74
3
HOH
HOH
574
A
HOH
75
3
HOH
HOH
575
A
HOH
76
3
HOH
HOH
576
A
HOH
77
3
HOH
HOH
577
A
HOH
78
3
HOH
HOH
578
A
HOH
79
3
HOH
HOH
579
A
HOH
80
3
HOH
HOH
580
A
HOH
81
3
HOH
HOH
581
A
HOH
82
3
HOH
HOH
582
A
HOH
83
3
HOH
HOH
583
A
HOH
84
3
HOH
HOH
584
A
HOH
85
3
HOH
HOH
585
A
HOH
86
3
HOH
HOH
586
A
HOH
87
3
HOH
HOH
587
A
HOH
88
3
HOH
HOH
588
A
HOH
89
3
HOH
HOH
589
A
HOH
90
3
HOH
HOH
590
A
HOH
91
3
HOH
HOH
591
A
HOH
92
3
HOH
HOH
592
A
HOH
93
3
HOH
HOH
593
A
HOH
94
3
HOH
HOH
594
A
HOH
95
3
HOH
HOH
595
A
HOH
96
3
HOH
HOH
596
A
HOH
97
3
HOH
HOH
597
A
HOH
98
3
HOH
HOH
598
A
HOH
99
3
HOH
HOH
599
A
HOH
100
3
HOH
HOH
600
A
HOH
101
3
HOH
HOH
601
A
HOH
102
3
HOH
HOH
602
A
HOH
103
3
HOH
HOH
603
A
HOH
104
3
HOH
HOH
604
A
HOH
105
3
HOH
HOH
605
A
HOH
106
3
HOH
HOH
606
A
HOH
107
3
HOH
HOH
607
A
HOH
108
3
HOH
HOH
608
A
HOH
109
3
HOH
HOH
609
A
HOH
110
3
HOH
HOH
610
A
HOH
111
3
HOH
HOH
611
A
HOH
112
3
HOH
HOH
612
A
HOH
113
3
HOH
HOH
613
A
HOH
114
3
HOH
HOH
614
A
HOH
115
3
HOH
HOH
615
A
HOH
116
3
HOH
HOH
616
A
HOH
117
3
HOH
HOH
617
A
HOH
118
3
HOH
HOH
618
A
HOH
119
3
HOH
HOH
619
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
111
A
n
9
112
A
n
10
113
A
n
11
114
A
n
12
115
A
HIS
116
n
13
HIS
116
A
GLY
117
n
14
GLY
117
A
VAL
118
n
15
VAL
118
A
CYS
119
n
16
CYS
119
A
TRP
120
n
17
TRP
120
A
ILE
121
n
18
ILE
121
A
TYR
122
n
19
TYR
122
A
TYR
123
n
20
TYR
123
A
PRO
124
n
21
PRO
124
A
ASP
125
n
22
ASP
125
A
GLY
126
n
23
GLY
126
A
GLY
127
n
24
GLY
127
A
SER
128
n
25
SER
128
A
LEU
129
n
26
LEU
129
A
VAL
130
n
27
VAL
130
A
GLY
131
n
28
GLY
131
A
GLU
132
n
29
GLU
132
A
VAL
133
n
30
VAL
133
A
ASN
134
n
31
ASN
134
A
GLU
135
n
32
GLU
135
A
ASP
136
n
33
ASP
136
A
GLY
137
n
34
GLY
137
A
GLU
138
n
35
GLU
138
A
MET
139
n
36
MET
139
A
THR
140
n
37
THR
140
A
GLY
141
n
38
GLY
141
A
GLU
142
n
39
GLU
142
A
LYS
143
n
40
LYS
143
A
ILE
144
n
41
ILE
144
A
ALA
145
n
42
ALA
145
A
TYR
146
n
43
TYR
146
A
VAL
147
n
44
VAL
147
A
TYR
148
n
45
TYR
148
A
PRO
149
n
46
PRO
149
A
ASP
150
n
47
ASP
150
A
GLU
151
n
48
GLU
151
A
ARG
152
n
49
ARG
152
A
THR
153
n
50
THR
153
A
ALA
154
n
51
ALA
154
A
LEU
155
n
52
LEU
155
A
TYR
156
n
53
TYR
156
A
GLY
157
n
54
GLY
157
A
LYS
158
n
55
LYS
158
A
PHE
159
n
56
PHE
159
A
ILE
160
n
57
ILE
160
A
ASP
161
n
58
ASP
161
A
GLY
162
n
59
GLY
162
A
GLU
163
n
60
GLU
163
A
MET
164
n
61
MET
164
A
ILE
165
n
62
ILE
165
A
GLU
166
n
63
GLU
166
A
GLY
167
n
64
GLY
167
A
LYS
168
n
65
LYS
168
A
LEU
169
n
66
LEU
169
A
ALA
170
n
67
ALA
170
A
THR
171
n
68
THR
171
A
LEU
172
n
69
LEU
172
A
MET
173
n
70
MET
173
A
SER
174
n
71
SER
174
A
THR
175
n
72
THR
175
A
GLU
176
n
73
GLU
176
A
GLU
177
n
74
GLU
177
A
GLY
178
n
75
GLY
178
A
ARG
179
n
76
ARG
179
A
PRO
180
n
77
PRO
180
A
HIS
181
n
78
HIS
181
A
PHE
182
n
79
PHE
182
A
GLU
183
n
80
GLU
183
A
LEU
184
n
81
LEU
184
A
MET
185
n
82
MET
185
A
PRO
186
n
83
PRO
186
A
GLY
187
n
84
GLY
187
A
ASN
188
n
85
ASN
188
A
SER
189
n
86
SER
189
A
VAL
190
n
87
VAL
190
A
TYR
191
n
88
TYR
191
A
HIS
192
n
89
HIS
192
A
PHE
193
n
90
PHE
193
A
ASP
194
n
91
ASP
194
A
LYS
195
n
92
LYS
195
A
SER
196
n
93
SER
196
A
THR
197
n
94
THR
197
A
SER
198
n
95
SER
198
A
SER
199
n
96
SER
199
A
CYS
200
n
97
CYS
200
A
ILE
201
n
98
ILE
201
A
SER
202
n
99
SER
202
A
THR
203
n
100
THR
203
A
ASN
204
n
101
ASN
204
A
ALA
205
n
102
ALA
205
A
LEU
206
n
103
LEU
206
A
LEU
207
n
104
LEU
207
A
PRO
208
n
105
PRO
208
A
ASP
209
n
106
ASP
209
A
PRO
210
n
107
PRO
210
A
TYR
211
n
108
TYR
211
A
GLU
212
n
109
GLU
212
A
SER
213
n
110
SER
213
A
GLU
214
n
111
GLU
214
A
ARG
215
n
112
ARG
215
A
VAL
216
n
113
VAL
216
A
TYR
217
n
114
TYR
217
A
VAL
218
n
115
VAL
218
A
ALA
219
n
116
ALA
219
A
GLU
220
n
117
GLU
220
A
SER
221
n
118
SER
221
A
LEU
222
n
119
LEU
222
A
ILE
223
n
120
ILE
223
A
SER
224
n
121
SER
224
A
SER
225
n
122
SER
225
A
ALA
226
n
123
ALA
226
A
GLY
227
n
124
GLY
227
A
GLU
228
n
125
GLU
228
A
GLY
229
n
126
GLY
229
A
LEU
230
n
127
LEU
230
A
PHE
231
n
128
PHE
231
A
SER
232
n
129
SER
232
A
LYS
233
n
130
LYS
233
A
VAL
234
n
131
VAL
234
A
ALA
235
n
132
ALA
235
A
VAL
236
n
133
VAL
236
A
GLY
237
n
134
GLY
237
A
PRO
238
n
135
PRO
238
A
ASN
239
n
136
ASN
239
A
THR
240
n
137
THR
240
A
VAL
241
n
138
VAL
241
A
MET
242
n
139
MET
242
A
SER
243
n
140
SER
243
A
PHE
244
n
141
PHE
244
A
TYR
245
n
142
TYR
245
A
ASN
246
n
143
ASN
246
A
GLY
247
n
144
GLY
247
A
VAL
248
n
145
VAL
248
A
ARG
249
n
146
ARG
249
A
ILE
250
n
147
ILE
250
A
THR
251
n
148
THR
251
A
HIS
252
n
149
HIS
252
A
GLN
253
n
150
GLN
253
A
GLU
254
n
151
GLU
254
A
VAL
255
n
152
VAL
255
A
ASP
256
n
153
ASP
256
A
SER
257
n
154
SER
257
A
ARG
258
n
155
ARG
258
A
ASP
259
n
156
ASP
259
A
TRP
260
n
157
TRP
260
A
ALA
261
n
158
ALA
261
A
LEU
262
n
159
LEU
262
A
ASN
263
n
160
ASN
263
A
GLY
264
n
161
GLY
264
A
ASN
265
n
162
ASN
265
A
THR
266
n
163
THR
266
A
LEU
267
n
164
LEU
267
A
SER
268
n
165
SER
268
A
LEU
269
n
166
LEU
269
A
ASP
270
n
167
ASP
270
A
GLU
271
n
168
GLU
271
A
GLU
272
n
169
GLU
272
A
THR
273
n
170
THR
273
A
VAL
274
n
171
VAL
274
A
ILE
275
n
172
ILE
275
A
ASP
276
n
173
ASP
276
A
VAL
277
n
174
VAL
277
A
PRO
278
n
175
PRO
278
A
GLU
279
n
176
GLU
279
A
PRO
280
n
177
PRO
280
A
TYR
281
n
178
TYR
281
A
ASN
282
n
179
ASN
282
A
HIS
283
n
180
HIS
283
A
VAL
284
n
181
VAL
284
A
SER
285
n
182
SER
285
A
LYS
286
n
183
LYS
286
A
TYR
287
n
184
TYR
287
A
CYS
288
n
185
CYS
288
A
ALA
289
n
186
ALA
289
A
SER
290
n
187
SER
290
A
LEU
291
n
188
LEU
291
A
GLY
292
n
189
GLY
292
A
HIS
293
n
190
HIS
293
A
LYS
294
n
191
LYS
294
A
ALA
295
n
192
ALA
295
A
ASN
296
n
193
ASN
296
A
HIS
297
n
194
HIS
297
A
SER
298
n
195
SER
298
A
PHE
299
n
196
PHE
299
A
THR
300
n
197
THR
300
A
PRO
301
n
198
PRO
301
A
ASN
302
n
199
ASN
302
A
CYS
303
n
200
CYS
303
A
ILE
304
n
201
ILE
304
A
TYR
305
n
202
TYR
305
A
ASP
306
n
203
ASP
306
A
MET
307
n
204
MET
307
A
PHE
308
n
205
PHE
308
A
VAL
309
n
206
VAL
309
A
HIS
310
n
207
HIS
310
A
PRO
311
n
208
PRO
311
A
ARG
312
n
209
ARG
312
A
PHE
313
n
210
PHE
313
A
GLY
314
n
211
GLY
314
A
PRO
315
n
212
PRO
315
A
ILE
316
n
213
ILE
316
A
LYS
317
n
214
LYS
317
A
CYS
318
n
215
CYS
318
A
ILE
319
n
216
ILE
319
A
ARG
320
n
217
ARG
320
A
THR
321
n
218
THR
321
A
LEU
322
n
219
LEU
322
A
ARG
323
n
220
ARG
323
A
ALA
324
n
221
ALA
324
A
VAL
325
n
222
VAL
325
A
GLU
326
n
223
GLU
326
A
ALA
327
n
224
ALA
327
A
ASP
328
n
225
ASP
328
A
GLU
329
n
226
GLU
329
A
GLU
330
n
227
GLU
330
A
LEU
331
n
228
LEU
331
A
THR
332
n
229
THR
332
A
VAL
333
n
230
VAL
333
A
ALA
334
n
231
ALA
334
A
TYR
335
n
232
TYR
335
A
GLY
336
n
233
GLY
336
A
TYR
337
n
234
TYR
337
A
n
235
338
A
n
236
339
A
n
237
340
A
n
238
341
A
n
239
342
A
n
240
343
A
n
241
344
A
n
242
345
A
n
243
346
A
n
244
347
A
n
245
348
A
n
246
349
A
PRO
350
n
247
PRO
350
A
GLU
351
n
248
GLU
351
A
TRP
352
n
249
TRP
352
A
TYR
353
n
250
TYR
353
A
GLN
354
n
251
GLN
354
A
VAL
355
n
252
VAL
355
A
GLU
356
n
253
GLU
356
A
LEU
357
n
254
LEU
357
A
LYS
358
n
255
LYS
358
A
ALA
359
n
256
ALA
359
A
PHE
360
n
257
PHE
360
A
GLN
361
n
258
GLN
361
A
ALA
362
n
259
ALA
362
A
n
260
363
A
n
261
364
A
n
262
365
A
n
263
366
A
5.5709
0.1637
0.1149
3.7791
0.9311
2.2403
0.2335
-0.4399
0.5021
0.3797
0.1292
-0.8566
0.0363
0.6008
-0.1758
0.1956
-0.0325
-0.0014
0.3288
-0.0572
0.4201
refined
-4.7059
7.0455
-13.1603
X-RAY DIFFRACTION
2.5908
-0.8420
0.2514
3.4538
0.1409
1.8329
0.1759
-0.1584
0.6001
-0.3152
-0.3065
-0.0813
-0.0548
-0.0040
-0.0240
0.2045
0.0102
0.0766
0.1131
-0.0018
0.1440
refined
-18.4616
10.1522
-20.9854
X-RAY DIFFRACTION
1.3671
-0.3004
0.0251
1.4513
-1.3274
1.9884
-0.0943
-0.3386
-0.2484
0.3779
-0.1224
0.7965
0.4983
-0.7880
-0.0665
0.3810
-0.1829
0.2413
0.5645
-0.0955
0.3648
refined
-33.2385
0.5667
-8.8511
X-RAY DIFFRACTION
2.8211
-0.2512
0.2521
4.1955
-0.5423
2.9850
0.1877
-0.4540
-0.0329
0.2429
-0.2118
0.8403
0.2266
-0.3648
0.0269
0.2425
-0.0550
0.0581
0.3153
-0.0412
0.2749
refined
-28.6302
2.0572
-15.8179
X-RAY DIFFRACTION
3.4599
-0.3936
-0.6536
3.9857
0.3146
3.1895
-0.1123
-0.0134
-0.3302
-0.8898
-0.3927
1.6709
0.2563
-0.9134
-0.1710
0.4806
-0.0716
-0.1488
0.4134
-0.1469
0.6559
refined
-36.1576
-7.1519
-26.0566
X-RAY DIFFRACTION
A
116
A
162
X-RAY DIFFRACTION
1
chain 'A' and (resseq 116:162)
A
163
A
240
X-RAY DIFFRACTION
2
chain 'A' and (resseq 163:240)
A
241
A
262
X-RAY DIFFRACTION
3
chain 'A' and (resseq 241:262)
A
263
A
321
X-RAY DIFFRACTION
4
chain 'A' and (resseq 263:321)
A
322
A
362
X-RAY DIFFRACTION
5
chain 'A' and (resseq 322:362)
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
121
A
N
ILE
18
A
O
LEU
129
A
O
LEU
26
A
N
SER
128
A
N
SER
25
A
O
VAL
147
A
O
VAL
44
A
N
ILE
144
A
N
ILE
41
A
O
GLY
157
A
O
GLY
54
A
N
TYR
156
A
N
TYR
53
A
O
LYS
168
A
O
LYS
65
A
N
SER
174
A
N
SER
71
A
O
HIS
181
A
O
HIS
78
A
N
ILE
121
A
N
ILE
18
A
O
LEU
129
A
O
LEU
26
A
N
SER
128
A
N
SER
25
A
O
VAL
147
A
O
VAL
44
A
N
ILE
144
A
N
ILE
41
A
O
GLY
157
A
O
GLY
54
A
N
TYR
156
A
N
TYR
53
A
O
LYS
168
A
O
LYS
65
A
N
GLY
167
A
N
GLY
64
A
O
TYR
191
A
O
TYR
88
A
N
ALA
219
A
N
ALA
116
A
O
GLY
229
A
O
GLY
126
A
N
LEU
230
A
N
LEU
127
A
O
LEU
331
A
O
LEU
228
A
O
VAL
333
A
O
VAL
230
A
N
ASN
296
A
N
ASN
193
A
N
MET
242
A
N
MET
139
A
O
ILE
319
A
O
ILE
216
A
O
ILE
316
A
O
ILE
213
A
N
PHE
308
A
N
PHE
205
A
N
ILE
250
A
N
ILE
147
A
O
VAL
274
A
O
VAL
171
A
O
ILE
275
A
O
ILE
172
A
N
LEU
267
A
N
LEU
164
1
A
GLY
1
A
GLY
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
SER
3
A
SER
3
1
Y
1
A
GLY
4
A
GLY
4
1
Y
1
A
SER
5
A
SER
5
1
Y
1
A
SER
6
A
SER
6
1
Y
1
A
GLY
7
A
GLY
7
1
Y
1
A
LYS
111
A
LYS
8
1
Y
1
A
ASP
112
A
ASP
9
1
Y
1
A
ASN
113
A
ASN
10
1
Y
1
A
ILE
114
A
ILE
11
1
Y
1
A
ARG
115
A
ARG
12
1
Y
1
A
ASP
338
A
ASP
235
1
Y
1
A
HIS
339
A
HIS
236
1
Y
1
A
SER
340
A
SER
237
1
Y
1
A
PRO
341
A
PRO
238
1
Y
1
A
PRO
342
A
PRO
239
1
Y
1
A
GLY
343
A
GLY
240
1
Y
1
A
LYS
344
A
LYS
241
1
Y
1
A
SER
345
A
SER
242
1
Y
1
A
GLY
346
A
GLY
243
1
Y
1
A
PRO
347
A
PRO
244
1
Y
1
A
GLU
348
A
GLU
245
1
Y
1
A
ALA
349
A
ALA
246
1
Y
1
A
THR
363
A
THR
260
1
Y
1
A
GLN
364
A
GLN
261
1
Y
1
A
GLN
365
A
GLN
262
1
Y
1
A
LYS
366
A
LYS
263
1
Y
1
A
ARG
152
-140.35
-47.94
1
A
ASP
194
-146.76
53.82
1
A
THR
197
-115.15
-168.78
1
A
SER
202
-176.08
147.38
119.320
47.0282
17.770
6.6979
-0.0000
-0.0000
-5.9808
-0.0000
-0.7171
0.2318
0.1863
0.1888
2.001
28.176
1120
18802
5.96
99.86
1.000
1.000
0.22
1
1.33
MOLECULAR REPLACEMENT
20.6300
0.86
1.10
1n6a
ML
FLAT BULK SOLVENT MODEL
60.860
0.400
2.001
28.176
119
2002
35
0
1848
0.008
1934
1.084
2628
14.435
702
0.073
281
0.004
338
0.2917
0.2357
2.0922
155
2126
8
99.00
0.2645
0.2121
2.2025
142
2153
8
100.00
0.2488
0.2002
2.3404
135
2184
8
100.00
0.2699
0.1907
2.5210
136
2193
8
100.00
0.2330
0.1973
2.7745
152
2187
8
100.00
0.2695
0.1967
3.1756
128
2206
8
100.00
0.2169
0.1699
3.9990
134
2258
8
100.00
0.1997
0.1773
28.1793
138
2375
8
100.00
33.370
2.00
50.0
3VV0
18855
-3.0
0.081
1
25.7
7.0
100
2.00
2.07
2.8
0.718
1
6.7
100
data collection
HKL-2000
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.7.3_928)
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of histone methyltransferase SET7/9 in complex with DAAM-3
1
N
N
2
N
N
3
N
N
A
ASP
209
A
ASP
106
HELX_P
A
GLU
214
A
GLU
111
1
1
6
A
THR
251
A
THR
148
HELX_P
A
SER
257
A
SER
154
1
2
7
A
ASP
259
A
ASP
156
HELX_P
A
ASN
263
A
ASN
160
5
3
5
A
LEU
291
A
LEU
188
HELX_P
A
ALA
295
A
ALA
192
5
4
5
A
GLU
351
A
GLU
248
HELX_P
A
ALA
362
A
ALA
259
1
5
12
TRANSFERASE/TRANSFERASE INHIBITOR
SET domain, transferase, adenosylmethionine binding, TRANSFERASE-TRANSFERASE INHIBITOR complex
A
GLU
279
A
GLU
176
1
A
PRO
280
A
PRO
177
1.14
SETD7_HUMAN
UNP
1
111
Q8WTS6
KDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSV
YHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLD
EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAP
EWYQVELKAFQATQQK
111
366
3VV0
111
366
Q8WTS6
A
1
8
263
1
expression tag
GLY
1
3VV0
A
Q8WTS6
UNP
1
1
expression tag
SER
2
3VV0
A
Q8WTS6
UNP
2
1
expression tag
SER
3
3VV0
A
Q8WTS6
UNP
3
1
expression tag
GLY
4
3VV0
A
Q8WTS6
UNP
4
1
expression tag
SER
5
3VV0
A
Q8WTS6
UNP
5
1
expression tag
SER
6
3VV0
A
Q8WTS6
UNP
6
1
expression tag
GLY
7
3VV0
A
Q8WTS6
UNP
7
6
6
4
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
118
A
VAL
15
A
TYR
122
A
TYR
19
A
SER
128
A
SER
25
A
GLU
132
A
GLU
29
A
GLY
141
A
GLY
38
A
VAL
147
A
VAL
44
A
THR
153
A
THR
50
A
ILE
160
A
ILE
57
A
GLU
163
A
GLU
60
A
GLU
176
A
GLU
73
A
ARG
179
A
ARG
76
A
LEU
184
A
LEU
81
A
VAL
118
A
VAL
15
A
TYR
122
A
TYR
19
A
SER
128
A
SER
25
A
GLU
132
A
GLU
29
A
GLY
141
A
GLY
38
A
VAL
147
A
VAL
44
A
THR
153
A
THR
50
A
ILE
160
A
ILE
57
A
GLU
163
A
GLU
60
A
GLU
176
A
GLU
73
A
VAL
190
A
VAL
87
A
TYR
191
A
TYR
88
A
VAL
216
A
VAL
113
A
GLU
220
A
GLU
117
A
GLU
228
A
GLU
125
A
SER
232
A
SER
129
A
GLU
330
A
GLU
227
A
VAL
333
A
VAL
230
A
ASN
296
A
ASN
193
A
HIS
297
A
HIS
194
A
VAL
241
A
VAL
138
A
TYR
245
A
TYR
142
A
GLY
314
A
GLY
211
A
THR
321
A
THR
218
A
CYS
303
A
CYS
200
A
HIS
310
A
HIS
207
A
VAL
248
A
VAL
145
A
ILE
250
A
ILE
147
A
VAL
274
A
VAL
171
A
ASP
276
A
ASP
173
A
LEU
267
A
LEU
164
A
SER
268
A
SER
165
BINDING SITE FOR RESIDUE KH3 A 401
A
KH3
401
Software
17
A
ILE
223
A
ILE
120
17
1_555
A
ALA
226
A
ALA
123
17
1_555
A
GLU
228
A
GLU
125
17
1_555
A
TYR
245
A
TYR
142
17
1_555
A
GLY
264
A
GLY
161
17
1_555
A
ASN
265
A
ASN
162
17
1_555
A
THR
266
A
THR
163
17
1_555
A
LEU
267
A
LEU
164
17
1_555
A
HIS
293
A
HIS
190
17
1_555
A
LYS
294
A
LYS
191
17
1_555
A
ASN
296
A
ASN
193
17
1_555
A
HIS
297
A
HIS
194
17
1_555
A
TYR
305
A
TYR
202
17
1_555
A
TYR
335
A
TYR
232
17
1_555
A
TRP
352
A
TRP
249
17
1_555
A
GLU
356
A
GLU
253
17
1_555
A
HOH
606
C
HOH
17
1_555
18
P 21 21 2