0.014613
0.000000
0.000000
0.000000
0.014613
0.000000
0.000000
0.000000
0.004104
0.00000
0.00000
0.00000
Yokoyama, H.
Mizutani, R.
Satow, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
68.430
68.430
243.658
C10 H15 N2 O7 P
306.209
n
1-(2'-DEOXY-5'-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-5-METHYLPYRIMIDIN-2(1H)-ONE
DNA linking
C10 H17 N2 O9 P
340.224
n
5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Co H18 N6 3
161.116
COBALT HEXAMMINE(III)
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
C
N
6
R
C
N
7
N
O
N
8
R
C
N
9
N
N
N
10
N
C
N
11
N
O
N
12
N
N
N
13
N
C
N
14
N
C
N
15
N
C
N
16
N
C
N
17
N
C
N
18
S
C
N
19
N
O
N
20
N
O
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
N
47
N
N
N
48
N
C
N
49
N
O
N
50
N
N
N
51
N
C
N
52
N
O
N
53
R
C
N
54
N
C
N
55
N
O
N
56
N
C
N
57
N
O
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
N
N
96
N
C
N
97
N
N
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
R
C
N
150
N
C
N
151
N
O
N
152
N
C
N
153
N
S
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
O
N
163
N
P
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
C
N
168
R
C
N
169
N
O
N
170
S
C
N
171
N
O
N
172
N
C
N
173
R
C
Y
174
N
N
Y
175
N
C
Y
176
N
N
Y
177
N
C
Y
178
N
C
N
179
N
N
Y
180
N
N
Y
181
N
C
Y
182
N
N
Y
183
N
C
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
O
N
199
N
P
N
200
N
O
N
201
N
O
N
202
N
O
N
203
N
C
N
204
R
C
N
205
N
O
N
206
S
C
N
207
N
O
N
208
N
C
N
209
R
C
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
N
N
214
N
C
N
215
N
N
N
216
N
C
N
217
N
C
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
O
N
233
N
P
N
234
N
O
N
235
N
O
N
236
N
O
N
237
N
C
N
238
R
C
N
239
N
O
N
240
S
C
N
241
N
O
N
242
N
C
N
243
R
C
Y
244
N
N
Y
245
N
C
Y
246
N
N
Y
247
N
C
N
248
N
C
N
249
N
O
N
250
N
N
N
251
N
C
N
252
N
N
N
253
N
N
Y
254
N
C
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
O
N
270
N
P
N
271
N
O
N
272
N
O
N
273
N
O
N
274
N
C
N
275
R
C
N
276
N
O
N
277
S
C
N
278
N
O
N
279
N
C
N
280
R
C
N
281
N
N
N
282
N
C
N
283
N
O
N
284
N
N
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
N
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
C
N
331
N
C
N
332
N
O
N
333
N
O
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
N
C
N
346
N
C
N
347
N
O
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
Y
359
N
C
Y
360
N
N
Y
361
N
C
Y
362
N
C
Y
363
N
N
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
S
C
N
383
N
C
N
384
N
C
N
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
N
405
N
C
N
406
N
C
N
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
N
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
N
C
N
452
N
C
N
453
N
S
N
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
CO
N
468
N
N
N
469
N
N
N
470
N
N
N
471
N
N
N
472
N
N
N
473
N
N
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
N
N
493
S
C
N
494
N
C
N
495
N
O
N
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
Y
502
N
C
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
N
N
533
S
C
N
534
N
C
N
535
N
O
N
536
N
C
N
537
N
O
N
538
N
O
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
N
N
547
S
C
N
548
N
C
N
549
N
O
N
550
R
C
N
551
N
O
N
552
N
C
N
553
N
O
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
N
N
564
S
C
N
565
N
C
N
566
N
O
N
567
N
C
Y
568
N
C
Y
569
N
C
Y
570
N
C
Y
571
N
N
Y
572
N
C
Y
573
N
C
Y
574
N
C
Y
575
N
C
Y
576
N
C
N
577
N
O
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
H
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
N
N
591
S
C
N
592
N
C
N
593
N
O
N
594
N
C
Y
595
N
C
Y
596
N
C
Y
597
N
C
Y
598
N
C
Y
599
N
C
Y
600
N
C
N
601
N
O
N
602
N
O
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
N
N
615
S
C
N
616
N
C
N
617
N
O
N
618
N
C
N
619
N
C
N
620
N
C
N
621
N
O
N
622
N
H
N
623
N
H
N
624
N
H
N
625
N
H
N
626
N
H
N
627
N
H
N
628
N
H
N
629
N
H
N
630
N
H
N
631
N
H
N
632
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
doub
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
doub
N
21
N
doub
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
Y
187
N
sing
Y
188
N
doub
N
189
N
sing
Y
190
N
doub
N
191
N
sing
N
192
N
sing
Y
193
N
sing
Y
194
N
doub
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
sing
Y
256
N
sing
Y
257
N
doub
N
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
sing
Y
366
N
doub
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
doub
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
Y
497
N
doub
Y
498
N
sing
Y
499
N
sing
N
500
N
sing
Y
501
N
doub
N
502
N
sing
Y
503
N
doub
N
504
N
sing
Y
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
doub
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
doub
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
doub
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
doub
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
Y
566
N
doub
Y
567
N
sing
Y
568
N
sing
N
569
N
sing
Y
570
N
doub
Y
571
N
sing
Y
572
N
sing
N
573
N
sing
Y
574
N
sing
Y
575
N
doub
N
576
N
sing
Y
577
N
doub
N
578
N
sing
Y
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
doub
N
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
Y
594
N
doub
Y
595
N
sing
Y
596
N
sing
N
597
N
sing
Y
598
N
doub
N
599
N
sing
Y
600
N
doub
N
601
N
sing
Y
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
doub
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
sing
N
622
N
sing
N
623
N
sing
N
624
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
69
504
512
10.1107/S0907444912050007
23519658
Structure of a double-stranded DNA (6-4) photoproduct in complex with the 64M-5 antibody Fab
2013
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
68
232
238
10.1107/S0907444912000327
22349224
Structure of the DNA (6-4) photoproduct dTT(6-4)TT in complex with the 64M-2 antibody Fab fragment implies increased antibody-binding affinity by the flanking nucleotides
2012
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
299
711
723
10.1006/jmbi.2000.3772
10835279
Crystal structure of the 64M-2 antibody Fab fragment in complex with a DNA dT(6-4)T photoproduct formed by ultraviolet radiation
2000
10.2210/pdb3vw3/pdb
pdb_00003vw3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2002-03-01
MAR CCD 165 mm
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.8000
1.0
BL41XU
SPring-8
0.8000
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
23993.572
Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain)
1
nat
polymer
23713.553
Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain)
1
nat
polymer
5638.668
DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)P*AP*TP*GP*GP*AP*CP*GP*G)-3')
1
syn
polymer
5396.507
DNA (5'-D(*CP*CP*CP*GP*TP*CP*CP*AP*TP*AP*AP*TP*CP*AP*CP*TP*CP*G)-3')
1
syn
polymer
161.116
COBALT HEXAMMINE(III)
1
syn
non-polymer
18.015
water
144
nat
water
no
no
DVLMTQTPLSLPVSLGDQASISCRSSQNIVHSNGYTYLEWYLQKPGQSPKLLIYTVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFRGSHVPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE
DVLMTQTPLSLPVSLGDQASISCRSSQNIVHSNGYTYLEWYLQKPGQSPKLLIYTVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFRGSHVPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE
L
polypeptide(L)
no
no
EVQLQQSGTVLARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGTIYPGNSDTTYSQKFKGKAKLTAVTSTSTAY
MELSSLTNEDSAVYYCSRRNYGSSYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
EVQLQQSGTVLARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGTIYPGNSDTTYSQKFKGKAKLTAVTSTSTAY
MELSSLTNEDSAVYYCSRRNYGSSYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
H
polypeptide(L)
no
yes
(DG)(DC)(DG)(DA)(DG)(DT)(DG)(DA)(64T)(5PY)(DA)(DT)(DG)(DG)(DA)(DC)(DG)(DG)
GCGAGTGATTATGGACGG
A
polydeoxyribonucleotide
no
no
(DC)(DC)(DC)(DG)(DT)(DC)(DC)(DA)(DT)(DA)(DA)(DT)(DC)(DA)(DC)(DT)(DC)(DG)
CCCGTCCATAATCACTCG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
hybridoma
sample
10090
Mus musculus
BALB/c
hybridoma
sample
10090
Mus musculus
BALB/c
1
2.43
49.34
VAPOR DIFFUSION, HANGING DROP
8.0
12% PEG 3350, 0.1M magnesium acetate, 10mM Cobalt hexamine chloride, 0.1M Tris-HCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
4.323
1
19
A
2
B
18
-1.472
A_DC2:DG18_B
1
-5.719
0.503
0.194
-0.073
11.922
1
19
A
3
B
17
-5.604
A_DG3:DC17_B
2
-12.755
0.522
0.050
-0.007
-3.002
1
20
A
4
B
16
-17.449
A_DA4:DT16_B
3
-12.717
0.502
-0.536
0.196
-11.126
1
19
A
5
B
15
-3.753
A_DG5:DC15_B
4
-9.072
0.218
-0.436
-0.026
-6.602
1
20
A
6
B
14
-4.019
A_DT6:DA14_B
5
-6.171
0.078
0.025
-0.116
8.730
1
19
A
7
B
13
-4.767
A_DG7:DC13_B
6
-4.723
0.273
0.508
-0.171
4.039
1
20
A
12
B
8
-3.326
A_DT12:DA8_B
7
5.943
0.133
-0.488
0.025
11.145
1
19
A
13
B
7
-2.012
A_DG13:DC7_B
8
-4.638
-0.413
0.289
0.011
6.549
1
19
A
14
B
6
-5.095
A_DG14:DC6_B
9
-13.528
0.172
0.340
0.052
-5.919
1
20
A
15
B
5
-7.861
A_DA15:DT5_B
10
-12.598
0.257
0.004
0.104
-0.766
1
19
A
16
B
4
-0.229
A_DC16:DG4_B
11
-1.698
0.076
0.190
0.241
10.855
1
19
A
17
B
3
-4.583
A_DG17:DC3_B
12
6.602
-0.200
0.193
-0.050
0.199
1
19
A
18
B
2
-6.982
A_DG18:DC2_B
13
1.126
0.399
-0.074
0.054
3.222
38.268
A
A
2
3
14.570
B
B
18
17
3.089
9.444
-1.098
0.546
AA_DC2DG3:DC17DG18_BB
1
-3.830
5.909
36.935
-0.334
1.201
3.549
40.408
A
A
3
4
-8.592
B
B
17
16
3.503
-5.915
-0.867
-0.524
AA_DG3DA4:DT16DC17_BB
2
-0.339
0.492
39.989
-0.038
1.215
3.468
39.487
A
A
4
5
1.324
B
B
16
15
3.535
0.894
1.027
-0.273
AA_DA4DG5:DC15DT16_BB
3
-2.202
3.261
39.418
-0.517
-1.798
2.898
27.304
A
A
5
6
17.362
B
B
15
14
3.184
8.060
-0.641
-0.686
AA_DG5DT6:DA14DC15_BB
4
-3.099
6.675
25.927
-3.370
0.621
2.984
35.114
A
A
6
7
0.908
B
B
14
13
2.985
0.546
-0.113
0.919
AA_DT6DG7:DC13DA14_BB
5
-5.193
8.638
34.736
1.449
-0.526
3.329
33.186
A
A
12
13
6.946
B
B
8
7
3.204
3.945
-0.135
1.378
AA_DT12DG13:DC7DA8_BB
6
-4.724
8.317
32.626
1.746
-0.562
3.309
37.466
A
A
13
14
7.166
B
B
7
6
3.387
4.592
-0.300
-0.499
AA_DG13DG14:DC6DC7_BB
7
-0.644
1.004
37.189
-1.395
0.381
3.488
36.337
A
A
14
15
-4.354
B
B
6
5
3.495
-2.713
-0.502
-0.215
AA_DG14DA15:DT5DC6_BB
8
0.942
-1.512
36.227
0.060
0.945
3.213
33.100
A
A
15
16
0.312
B
B
5
4
3.251
0.178
0.724
-0.974
AA_DA15DC16:DG4DT5_BB
9
-1.420
2.493
33.070
-1.739
-1.508
3.123
32.444
A
A
16
17
-1.857
B
B
4
3
3.102
-1.036
0.522
0.404
AA_DC16DG17:DC3DG4_BB
10
3.056
-5.479
32.287
0.897
-0.423
3.552
38.359
A
A
17
18
5.946
B
B
3
2
3.605
3.901
-0.661
-0.469
AA_DG17DG18:DC2DC3_BB
11
-0.636
0.970
38.162
-1.248
0.919
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-03-27
1
1
2014-04-30
1
2
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The related antibody Fab in complex with DNA (6-4) photoproduct
The related antibody Fab in complex with DNA (6-4) photoproduct
PDBJ
Y
PDBJ
2012-07-30
REL
REL
NCO
COBALT HEXAMMINE(III)
HOH
water
DNA with (6-4) photoproduct
sample
synthetic DNA
sample
1KEG
PDB entry 1KEG
PDB
experimental model
NCO
201
5
NCO
NCO
301
H
HOH
1
6
HOH
HOH
301
L
HOH
2
6
HOH
HOH
302
L
HOH
4
6
HOH
HOH
303
L
HOH
14
6
HOH
HOH
304
L
HOH
15
6
HOH
HOH
305
L
HOH
16
6
HOH
HOH
306
L
HOH
17
6
HOH
HOH
307
L
HOH
26
6
HOH
HOH
308
L
HOH
27
6
HOH
HOH
309
L
HOH
28
6
HOH
HOH
310
L
HOH
33
6
HOH
HOH
311
L
HOH
39
6
HOH
HOH
312
L
HOH
41
6
HOH
HOH
313
L
HOH
43
6
HOH
HOH
314
L
HOH
46
6
HOH
HOH
315
L
HOH
50
6
HOH
HOH
316
L
HOH
53
6
HOH
HOH
317
L
HOH
54
6
HOH
HOH
318
L
HOH
57
6
HOH
HOH
319
L
HOH
64
6
HOH
HOH
320
L
HOH
66
6
HOH
HOH
321
L
HOH
67
6
HOH
HOH
322
L
HOH
68
6
HOH
HOH
323
L
HOH
69
6
HOH
HOH
324
L
HOH
70
6
HOH
HOH
325
L
HOH
71
6
HOH
HOH
326
L
HOH
72
6
HOH
HOH
327
L
HOH
75
6
HOH
HOH
328
L
HOH
76
6
HOH
HOH
329
L
HOH
77
6
HOH
HOH
330
L
HOH
80
6
HOH
HOH
331
L
HOH
81
6
HOH
HOH
332
L
HOH
87
6
HOH
HOH
333
L
HOH
91
6
HOH
HOH
334
L
HOH
92
6
HOH
HOH
335
L
HOH
93
6
HOH
HOH
336
L
HOH
100
6
HOH
HOH
337
L
HOH
101
6
HOH
HOH
338
L
HOH
104
6
HOH
HOH
339
L
HOH
105
6
HOH
HOH
340
L
HOH
115
6
HOH
HOH
341
L
HOH
116
6
HOH
HOH
342
L
HOH
117
6
HOH
HOH
343
L
HOH
119
6
HOH
HOH
344
L
HOH
122
6
HOH
HOH
345
L
HOH
124
6
HOH
HOH
346
L
HOH
125
6
HOH
HOH
347
L
HOH
127
6
HOH
HOH
348
L
HOH
128
6
HOH
HOH
349
L
HOH
133
6
HOH
HOH
350
L
HOH
136
6
HOH
HOH
351
L
HOH
137
6
HOH
HOH
352
L
HOH
138
6
HOH
HOH
353
L
HOH
3
6
HOH
HOH
401
H
HOH
5
6
HOH
HOH
402
H
HOH
6
6
HOH
HOH
403
H
HOH
7
6
HOH
HOH
404
H
HOH
8
6
HOH
HOH
405
H
HOH
9
6
HOH
HOH
406
H
HOH
10
6
HOH
HOH
407
H
HOH
11
6
HOH
HOH
408
H
HOH
12
6
HOH
HOH
409
H
HOH
18
6
HOH
HOH
410
H
HOH
20
6
HOH
HOH
411
H
HOH
21
6
HOH
HOH
412
H
HOH
22
6
HOH
HOH
413
H
HOH
23
6
HOH
HOH
414
H
HOH
24
6
HOH
HOH
415
H
HOH
25
6
HOH
HOH
416
H
HOH
30
6
HOH
HOH
417
H
HOH
31
6
HOH
HOH
418
H
HOH
32
6
HOH
HOH
419
H
HOH
35
6
HOH
HOH
420
H
HOH
37
6
HOH
HOH
421
H
HOH
40
6
HOH
HOH
422
H
HOH
42
6
HOH
HOH
423
H
HOH
44
6
HOH
HOH
424
H
HOH
45
6
HOH
HOH
425
H
HOH
47
6
HOH
HOH
426
H
HOH
48
6
HOH
HOH
427
H
HOH
49
6
HOH
HOH
428
H
HOH
51
6
HOH
HOH
429
H
HOH
52
6
HOH
HOH
430
H
HOH
55
6
HOH
HOH
431
H
HOH
56
6
HOH
HOH
432
H
HOH
58
6
HOH
HOH
433
H
HOH
59
6
HOH
HOH
434
H
HOH
61
6
HOH
HOH
435
H
HOH
62
6
HOH
HOH
436
H
HOH
63
6
HOH
HOH
437
H
HOH
65
6
HOH
HOH
438
H
HOH
73
6
HOH
HOH
439
H
HOH
74
6
HOH
HOH
440
H
HOH
78
6
HOH
HOH
441
H
HOH
79
6
HOH
HOH
442
H
HOH
82
6
HOH
HOH
443
H
HOH
83
6
HOH
HOH
444
H
HOH
84
6
HOH
HOH
445
H
HOH
85
6
HOH
HOH
446
H
HOH
86
6
HOH
HOH
447
H
HOH
88
6
HOH
HOH
448
H
HOH
89
6
HOH
HOH
449
H
HOH
90
6
HOH
HOH
450
H
HOH
95
6
HOH
HOH
451
H
HOH
97
6
HOH
HOH
452
H
HOH
98
6
HOH
HOH
453
H
HOH
99
6
HOH
HOH
454
H
HOH
102
6
HOH
HOH
455
H
HOH
107
6
HOH
HOH
456
H
HOH
108
6
HOH
HOH
457
H
HOH
110
6
HOH
HOH
458
H
HOH
112
6
HOH
HOH
459
H
HOH
113
6
HOH
HOH
460
H
HOH
114
6
HOH
HOH
461
H
HOH
118
6
HOH
HOH
462
H
HOH
120
6
HOH
HOH
463
H
HOH
121
6
HOH
HOH
464
H
HOH
123
6
HOH
HOH
465
H
HOH
129
6
HOH
HOH
466
H
HOH
130
6
HOH
HOH
467
H
HOH
132
6
HOH
HOH
468
H
HOH
134
6
HOH
HOH
469
H
HOH
135
6
HOH
HOH
470
H
HOH
143
6
HOH
HOH
471
H
HOH
144
6
HOH
HOH
472
H
HOH
13
6
HOH
HOH
101
A
HOH
29
6
HOH
HOH
102
A
HOH
36
6
HOH
HOH
103
A
HOH
96
6
HOH
HOH
104
A
HOH
103
6
HOH
HOH
105
A
HOH
109
6
HOH
HOH
106
A
HOH
131
6
HOH
HOH
107
A
HOH
139
6
HOH
HOH
108
A
HOH
140
6
HOH
HOH
109
A
HOH
141
6
HOH
HOH
110
A
HOH
142
6
HOH
HOH
111
A
HOH
19
6
HOH
HOH
101
B
HOH
34
6
HOH
HOH
102
B
HOH
38
6
HOH
HOH
103
B
HOH
60
6
HOH
HOH
104
B
HOH
94
6
HOH
HOH
105
B
HOH
106
6
HOH
HOH
106
B
HOH
111
6
HOH
HOH
107
B
HOH
126
6
HOH
HOH
108
B
n
1
1
L
VAL
2
n
2
VAL
2
L
LEU
3
n
3
LEU
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
THR
7
n
7
THR
7
L
PRO
8
n
8
PRO
8
L
LEU
9
n
9
LEU
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
PRO
12
n
12
PRO
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
ASP
17
n
17
ASP
17
L
GLN
18
n
18
GLN
18
L
ALA
19
n
19
ALA
19
L
SER
20
n
20
SER
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
ASN
27
n
28
A
ASN
27
L
ILE
27
n
29
B
ILE
27
L
VAL
27
n
30
C
VAL
27
L
HIS
27
n
31
D
HIS
27
L
SER
27
n
32
E
SER
27
L
ASN
28
n
33
ASN
28
L
GLY
29
n
34
GLY
29
L
TYR
30
n
35
TYR
30
L
THR
31
n
36
THR
31
L
TYR
32
n
37
TYR
32
L
LEU
33
n
38
LEU
33
L
GLU
34
n
39
GLU
34
L
TRP
35
n
40
TRP
35
L
TYR
36
n
41
TYR
36
L
LEU
37
n
42
LEU
37
L
GLN
38
n
43
GLN
38
L
LYS
39
n
44
LYS
39
L
PRO
40
n
45
PRO
40
L
GLY
41
n
46
GLY
41
L
GLN
42
n
47
GLN
42
L
SER
43
n
48
SER
43
L
PRO
44
n
49
PRO
44
L
LYS
45
n
50
LYS
45
L
LEU
46
n
51
LEU
46
L
LEU
47
n
52
LEU
47
L
ILE
48
n
53
ILE
48
L
TYR
49
n
54
TYR
49
L
THR
50
n
55
THR
50
L
VAL
51
n
56
VAL
51
L
SER
52
n
57
SER
52
L
ASN
53
n
58
ASN
53
L
ARG
54
n
59
ARG
54
L
PHE
55
n
60
PHE
55
L
SER
56
n
61
SER
56
L
GLY
57
n
62
GLY
57
L
VAL
58
n
63
VAL
58
L
PRO
59
n
64
PRO
59
L
ASP
60
n
65
ASP
60
L
ARG
61
n
66
ARG
61
L
PHE
62
n
67
PHE
62
L
SER
63
n
68
SER
63
L
GLY
64
n
69
GLY
64
L
SER
65
n
70
SER
65
L
GLY
66
n
71
GLY
66
L
SER
67
n
72
SER
67
L
GLY
68
n
73
GLY
68
L
THR
69
n
74
THR
69
L
ASP
70
n
75
ASP
70
L
PHE
71
n
76
PHE
71
L
THR
72
n
77
THR
72
L
LEU
73
n
78
LEU
73
L
LYS
74
n
79
LYS
74
L
ILE
75
n
80
ILE
75
L
SER
76
n
81
SER
76
L
ARG
77
n
82
ARG
77
L
VAL
78
n
83
VAL
78
L
GLU
79
n
84
GLU
79
L
ALA
80
n
85
ALA
80
L
GLU
81
n
86
GLU
81
L
ASP
82
n
87
ASP
82
L
LEU
83
n
88
LEU
83
L
GLY
84
n
89
GLY
84
L
VAL
85
n
90
VAL
85
L
TYR
86
n
91
TYR
86
L
TYR
87
n
92
TYR
87
L
CYS
88
n
93
CYS
88
L
PHE
89
n
94
PHE
89
L
ARG
90
n
95
ARG
90
L
GLY
91
n
96
GLY
91
L
SER
92
n
97
SER
92
L
HIS
93
n
98
HIS
93
L
VAL
94
n
99
VAL
94
L
PRO
95
n
100
PRO
95
L
THR
97
n
101
THR
97
L
PHE
98
n
102
PHE
98
L
GLY
99
n
103
GLY
99
L
GLY
100
n
104
GLY
100
L
GLY
101
n
105
GLY
101
L
THR
102
n
106
THR
102
L
LYS
103
n
107
LYS
103
L
LEU
104
n
108
LEU
104
L
GLU
105
n
109
GLU
105
L
ILE
106
n
110
ILE
106
L
LYS
107
n
111
LYS
107
L
ARG
108
n
112
ARG
108
L
ALA
109
n
113
ALA
109
L
ASP
110
n
114
ASP
110
L
ALA
111
n
115
ALA
111
L
ALA
112
n
116
ALA
112
L
PRO
113
n
117
PRO
113
L
THR
114
n
118
THR
114
L
VAL
115
n
119
VAL
115
L
SER
116
n
120
SER
116
L
ILE
117
n
121
ILE
117
L
PHE
118
n
122
PHE
118
L
PRO
119
n
123
PRO
119
L
PRO
120
n
124
PRO
120
L
SER
121
n
125
SER
121
L
SER
122
n
126
SER
122
L
GLU
123
n
127
GLU
123
L
GLN
124
n
128
GLN
124
L
LEU
125
n
129
LEU
125
L
THR
126
n
130
THR
126
L
SER
127
n
131
SER
127
L
GLY
128
n
132
GLY
128
L
GLY
129
n
133
GLY
129
L
ALA
130
n
134
ALA
130
L
SER
131
n
135
SER
131
L
VAL
132
n
136
VAL
132
L
VAL
133
n
137
VAL
133
L
CYS
134
n
138
CYS
134
L
PHE
135
n
139
PHE
135
L
LEU
136
n
140
LEU
136
L
ASN
137
n
141
ASN
137
L
ASN
138
n
142
ASN
138
L
PHE
139
n
143
PHE
139
L
TYR
140
n
144
TYR
140
L
PRO
141
n
145
PRO
141
L
LYS
142
n
146
LYS
142
L
ASP
143
n
147
ASP
143
L
ILE
144
n
148
ILE
144
L
ASN
145
n
149
ASN
145
L
VAL
146
n
150
VAL
146
L
LYS
147
n
151
LYS
147
L
TRP
148
n
152
TRP
148
L
LYS
149
n
153
LYS
149
L
ILE
150
n
154
ILE
150
L
ASP
151
n
155
ASP
151
L
GLY
152
n
156
GLY
152
L
SER
153
n
157
SER
153
L
GLU
154
n
158
GLU
154
L
ARG
155
n
159
ARG
155
L
GLN
156
n
160
GLN
156
L
ASN
157
n
161
ASN
157
L
GLY
158
n
162
GLY
158
L
VAL
159
n
163
VAL
159
L
LEU
160
n
164
LEU
160
L
ASN
161
n
165
ASN
161
L
SER
162
n
166
SER
162
L
TRP
163
n
167
TRP
163
L
THR
164
n
168
THR
164
L
ASP
165
n
169
ASP
165
L
GLN
166
n
170
GLN
166
L
ASP
167
n
171
ASP
167
L
SER
168
n
172
SER
168
L
LYS
169
n
173
LYS
169
L
ASP
170
n
174
ASP
170
L
SER
171
n
175
SER
171
L
THR
172
n
176
THR
172
L
TYR
173
n
177
TYR
173
L
SER
174
n
178
SER
174
L
MET
175
n
179
MET
175
L
SER
176
n
180
SER
176
L
SER
177
n
181
SER
177
L
THR
178
n
182
THR
178
L
LEU
179
n
183
LEU
179
L
THR
180
n
184
THR
180
L
LEU
181
n
185
LEU
181
L
THR
182
n
186
THR
182
L
LYS
183
n
187
LYS
183
L
ASP
184
n
188
ASP
184
L
GLU
185
n
189
GLU
185
L
TYR
186
n
190
TYR
186
L
GLU
187
n
191
GLU
187
L
ARG
188
n
192
ARG
188
L
HIS
189
n
193
HIS
189
L
ASN
190
n
194
ASN
190
L
SER
191
n
195
SER
191
L
TYR
192
n
196
TYR
192
L
THR
193
n
197
THR
193
L
CYS
194
n
198
CYS
194
L
GLU
195
n
199
GLU
195
L
ALA
196
n
200
ALA
196
L
THR
197
n
201
THR
197
L
HIS
198
n
202
HIS
198
L
LYS
199
n
203
LYS
199
L
THR
200
n
204
THR
200
L
SER
201
n
205
SER
201
L
THR
202
n
206
THR
202
L
SER
203
n
207
SER
203
L
PRO
204
n
208
PRO
204
L
ILE
205
n
209
ILE
205
L
VAL
206
n
210
VAL
206
L
LYS
207
n
211
LYS
207
L
SER
208
n
212
SER
208
L
PHE
209
n
213
PHE
209
L
ASN
210
n
214
ASN
210
L
ARG
211
n
215
ARG
211
L
ASN
212
n
216
ASN
212
L
n
217
213
L
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
THR
9
n
9
THR
9
H
VAL
10
n
10
VAL
10
H
LEU
11
n
11
LEU
11
H
ALA
12
n
12
ALA
12
H
ARG
13
n
13
ARG
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
ALA
16
n
16
ALA
16
H
SER
17
n
17
SER
17
H
VAL
18
n
18
VAL
18
H
LYS
19
n
19
LYS
19
H
MET
20
n
20
MET
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
ALA
24
n
24
ALA
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
THR
28
n
28
THR
28
H
PHE
29
n
29
PHE
29
H
THR
30
n
30
THR
30
H
ASN
31
n
31
ASN
31
H
TYR
32
n
32
TYR
32
H
TRP
33
n
33
TRP
33
H
MET
34
n
34
MET
34
H
HIS
35
n
35
HIS
35
H
TRP
36
n
36
TRP
36
H
ILE
37
n
37
ILE
37
H
LYS
38
n
38
LYS
38
H
GLN
39
n
39
GLN
39
H
ARG
40
n
40
ARG
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
GLN
43
n
43
GLN
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
ILE
48
n
48
ILE
48
H
GLY
49
n
49
GLY
49
H
THR
50
n
50
THR
50
H
ILE
51
n
51
ILE
51
H
TYR
52
n
52
TYR
52
H
PRO
52
n
53
A
PRO
52
H
GLY
53
n
54
GLY
53
H
ASN
54
n
55
ASN
54
H
SER
55
n
56
SER
55
H
ASP
56
n
57
ASP
56
H
THR
57
n
58
THR
57
H
THR
58
n
59
THR
58
H
TYR
59
n
60
TYR
59
H
SER
60
n
61
SER
60
H
GLN
61
n
62
GLN
61
H
LYS
62
n
63
LYS
62
H
PHE
63
n
64
PHE
63
H
LYS
64
n
65
LYS
64
H
GLY
65
n
66
GLY
65
H
LYS
66
n
67
LYS
66
H
ALA
67
n
68
ALA
67
H
LYS
68
n
69
LYS
68
H
LEU
69
n
70
LEU
69
H
THR
70
n
71
THR
70
H
ALA
71
n
72
ALA
71
H
VAL
72
n
73
VAL
72
H
THR
73
n
74
THR
73
H
SER
74
n
75
SER
74
H
THR
75
n
76
THR
75
H
SER
76
n
77
SER
76
H
THR
77
n
78
THR
77
H
ALA
78
n
79
ALA
78
H
TYR
79
n
80
TYR
79
H
MET
80
n
81
MET
80
H
GLU
81
n
82
GLU
81
H
LEU
82
n
83
LEU
82
H
SER
82
n
84
A
SER
82
H
SER
82
n
85
B
SER
82
H
LEU
82
n
86
C
LEU
82
H
THR
83
n
87
THR
83
H
ASN
84
n
88
ASN
84
H
GLU
85
n
89
GLU
85
H
ASP
86
n
90
ASP
86
H
SER
87
n
91
SER
87
H
ALA
88
n
92
ALA
88
H
VAL
89
n
93
VAL
89
H
TYR
90
n
94
TYR
90
H
TYR
91
n
95
TYR
91
H
CYS
92
n
96
CYS
92
H
SER
93
n
97
SER
93
H
ARG
94
n
98
ARG
94
H
ARG
95
n
99
ARG
95
H
ASN
96
n
100
ASN
96
H
TYR
97
n
101
TYR
97
H
GLY
98
n
102
GLY
98
H
SER
99
n
103
SER
99
H
SER
100
n
104
SER
100
H
TYR
100
n
105
I
TYR
100
H
ALA
100
n
106
J
ALA
100
H
MET
100
n
107
K
MET
100
H
ASP
101
n
108
ASP
101
H
TYR
102
n
109
TYR
102
H
TRP
103
n
110
TRP
103
H
GLY
104
n
111
GLY
104
H
GLN
105
n
112
GLN
105
H
GLY
106
n
113
GLY
106
H
THR
107
n
114
THR
107
H
SER
108
n
115
SER
108
H
VAL
109
n
116
VAL
109
H
THR
110
n
117
THR
110
H
VAL
111
n
118
VAL
111
H
SER
112
n
119
SER
112
H
SER
113
n
120
SER
113
H
ALA
114
n
121
ALA
114
H
LYS
115
n
122
LYS
115
H
THR
116
n
123
THR
116
H
THR
117
n
124
THR
117
H
PRO
118
n
125
PRO
118
H
PRO
119
n
126
PRO
119
H
SER
120
n
127
SER
120
H
VAL
121
n
128
VAL
121
H
TYR
122
n
129
TYR
122
H
PRO
123
n
130
PRO
123
H
LEU
124
n
131
LEU
124
H
ALA
125
n
132
ALA
125
H
PRO
126
n
133
PRO
126
H
GLY
127
n
134
GLY
127
H
SER
128
n
135
SER
128
H
ALA
129
n
136
ALA
129
H
ALA
130
n
137
ALA
130
H
GLN
133
n
138
GLN
133
H
THR
134
n
139
THR
134
H
n
140
135
H
SER
136
n
141
SER
136
H
MET
137
n
142
MET
137
H
VAL
138
n
143
VAL
138
H
THR
139
n
144
THR
139
H
LEU
140
n
145
LEU
140
H
GLY
141
n
146
GLY
141
H
CYS
142
n
147
CYS
142
H
LEU
143
n
148
LEU
143
H
VAL
144
n
149
VAL
144
H
LYS
145
n
150
LYS
145
H
GLY
146
n
151
GLY
146
H
TYR
147
n
152
TYR
147
H
PHE
148
n
153
PHE
148
H
PRO
149
n
154
PRO
149
H
GLU
150
n
155
GLU
150
H
PRO
151
n
156
PRO
151
H
VAL
152
n
157
VAL
152
H
THR
153
n
158
THR
153
H
VAL
154
n
159
VAL
154
H
THR
156
n
160
THR
156
H
TRP
157
n
161
TRP
157
H
ASN
162
n
162
ASN
162
H
SER
163
n
163
SER
163
H
GLY
164
n
164
GLY
164
H
SER
165
n
165
SER
165
H
LEU
166
n
166
LEU
166
H
SER
167
n
167
SER
167
H
SER
168
n
168
SER
168
H
GLY
169
n
169
GLY
169
H
VAL
171
n
170
VAL
171
H
HIS
172
n
171
HIS
172
H
THR
173
n
172
THR
173
H
PHE
174
n
173
PHE
174
H
PRO
175
n
174
PRO
175
H
ALA
176
n
175
ALA
176
H
VAL
177
n
176
VAL
177
H
LEU
178
n
177
LEU
178
H
GLN
179
n
178
GLN
179
H
SER
180
n
179
SER
180
H
ASP
183
n
180
ASP
183
H
LEU
184
n
181
LEU
184
H
TYR
185
n
182
TYR
185
H
THR
186
n
183
THR
186
H
LEU
187
n
184
LEU
187
H
SER
188
n
185
SER
188
H
SER
189
n
186
SER
189
H
SER
190
n
187
SER
190
H
VAL
191
n
188
VAL
191
H
THR
192
n
189
THR
192
H
n
190
193
H
n
191
194
H
n
192
195
H
SER
196
n
193
SER
196
H
THR
199
n
194
THR
199
H
TRP
200
n
195
TRP
200
H
PRO
202
n
196
PRO
202
H
SER
203
n
197
SER
203
H
GLU
204
n
198
GLU
204
H
THR
205
n
199
THR
205
H
VAL
206
n
200
VAL
206
H
THR
207
n
201
THR
207
H
CYS
208
n
202
CYS
208
H
ASN
209
n
203
ASN
209
H
VAL
210
n
204
VAL
210
H
ALA
211
n
205
ALA
211
H
HIS
212
n
206
HIS
212
H
PRO
213
n
207
PRO
213
H
ALA
214
n
208
ALA
214
H
SER
215
n
209
SER
215
H
SER
216
n
210
SER
216
H
THR
217
n
211
THR
217
H
LYS
218
n
212
LYS
218
H
VAL
219
n
213
VAL
219
H
ASP
220
n
214
ASP
220
H
LYS
221
n
215
LYS
221
H
LYS
222
n
216
LYS
222
H
ILE
223
n
217
ILE
223
H
VAL
226
n
218
VAL
226
H
PRO
227
n
219
PRO
227
H
ARG
228
n
220
ARG
228
H
DG
1
n
1
DG
1
A
DC
2
n
2
DC
2
A
DG
3
n
3
DG
3
A
DA
4
n
4
DA
4
A
DG
5
n
5
DG
5
A
DT
6
n
6
DT
6
A
DG
7
n
7
DG
7
A
DA
8
n
8
DA
8
A
64T
9
n
9
64T
9
A
5PY
10
n
10
5PY
10
A
DA
11
n
11
DA
11
A
DT
12
n
12
DT
12
A
DG
13
n
13
DG
13
A
DG
14
n
14
DG
14
A
DA
15
n
15
DA
15
A
DC
16
n
16
DC
16
A
DG
17
n
17
DG
17
A
DG
18
n
18
DG
18
A
DC
1
n
1
DC
1
B
DC
2
n
2
DC
2
B
DC
3
n
3
DC
3
B
DG
4
n
4
DG
4
B
DT
5
n
5
DT
5
B
DC
6
n
6
DC
6
B
DC
7
n
7
DC
7
B
DA
8
n
8
DA
8
B
DT
9
n
9
DT
9
B
DA
10
n
10
DA
10
B
DA
11
n
11
DA
11
B
DT
12
n
12
DT
12
B
DC
13
n
13
DC
13
B
DA
14
n
14
DA
14
B
DC
15
n
15
DC
15
B
DT
16
n
16
DT
16
B
DC
17
n
17
DC
17
B
DG
18
n
18
DG
18
B
author_and_software_defined_assembly
PISA
4
tetrameric
8000
-18
25090
A
64T
9
5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE
C
64T
9
DT
A
5PY
10
C
5PY
10
DT
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
N
THR
7
A
N
THR
7
L
O
SER
22
A
O
SER
22
L
N
CYS
23
A
N
CYS
23
L
O
PHE
71
A
O
PHE
76
L
O
THR
72
A
O
THR
77
L
N
SER
65
A
N
SER
70
L
N
LEU
11
A
N
LEU
11
L
O
LYS
103
A
O
LYS
107
L
O
LEU
104
A
O
LEU
108
L
N
GLY
84
A
N
GLY
89
L
O
PHE
89
A
O
PHE
94
L
N
GLU
34
A
N
GLU
39
L
N
LEU
37
A
N
LEU
42
L
O
LYS
45
A
O
LYS
50
L
N
TYR
49
A
N
TYR
54
L
O
ASN
53
A
O
ASN
58
L
N
LEU
11
A
N
LEU
11
L
O
LYS
103
A
O
LYS
107
L
O
LEU
104
A
O
LEU
108
L
N
GLY
84
A
N
GLY
89
L
N
ARG
90
A
N
ARG
95
L
O
THR
97
A
O
THR
101
L
N
PHE
118
A
N
PHE
122
L
O
VAL
133
A
O
VAL
137
L
N
VAL
132
A
N
VAL
136
L
O
LEU
179
A
O
LEU
183
L
O
THR
178
A
O
THR
182
L
N
LEU
160
A
N
LEU
164
L
O
ARG
155
A
O
ARG
159
L
N
TRP
148
A
N
TRP
152
L
N
LYS
147
A
N
LYS
151
L
O
GLU
195
A
O
GLU
199
L
N
CYS
194
A
N
CYS
198
L
O
LYS
207
A
O
LYS
211
H
N
GLN
5
B
N
GLN
5
H
O
LYS
23
B
O
LYS
23
H
N
CYS
22
B
N
CYS
22
H
O
ALA
78
B
O
ALA
79
H
O
TYR
79
B
O
TYR
80
H
N
THR
70
B
N
THR
71
H
N
ALA
12
B
N
ALA
12
H
O
THR
110
B
O
THR
117
H
O
VAL
109
B
O
VAL
116
H
N
ALA
88
B
N
ALA
92
H
O
TYR
91
B
O
TYR
95
H
N
ILE
37
B
N
ILE
37
H
N
MET
34
B
N
MET
34
H
O
ILE
51
B
O
ILE
51
H
N
THR
50
B
N
THR
50
H
O
THR
58
B
O
THR
59
H
N
ALA
12
B
N
ALA
12
H
O
THR
110
B
O
THR
117
H
O
VAL
109
B
O
VAL
116
H
N
ALA
88
B
N
ALA
92
H
N
ASN
96
B
N
ASN
100
J
H
O
ALA
100
B
O
ALA
106
H
N
LEU
124
B
N
LEU
131
H
O
GLY
141
B
O
GLY
146
H
N
VAL
144
B
N
VAL
149
H
O
LEU
187
B
O
LEU
184
H
O
SER
190
B
O
SER
187
H
N
HIS
172
B
N
HIS
171
H
N
LEU
124
B
N
LEU
131
H
O
GLY
141
B
O
GLY
146
H
N
VAL
144
B
N
VAL
149
H
O
LEU
187
B
O
LEU
184
H
O
THR
186
B
O
THR
183
H
N
VAL
177
B
N
VAL
176
H
N
THR
153
B
N
THR
158
H
O
ALA
211
B
O
ALA
205
H
N
CYS
208
B
N
CYS
202
H
O
LYS
221
B
O
LYS
215
1
L
CG
LEU
3
A
CG
LEU
3
0
Y
1
L
CD1
LEU
3
A
CD1
LEU
3
0
Y
1
L
CD2
LEU
3
A
CD2
LEU
3
0
Y
1
L
CG
ARG
24
A
CG
ARG
24
0
Y
1
L
CD
ARG
24
A
CD
ARG
24
0
Y
1
L
NE
ARG
24
A
NE
ARG
24
0
Y
1
L
CZ
ARG
24
A
CZ
ARG
24
0
Y
1
L
NH1
ARG
24
A
NH1
ARG
24
0
Y
1
L
NH2
ARG
24
A
NH2
ARG
24
0
Y
1
L
OG
SER
63
A
OG
SER
68
0
Y
1
L
CG1
ILE
106
A
CG1
ILE
110
0
Y
1
L
CG2
ILE
106
A
CG2
ILE
110
0
Y
1
L
CD1
ILE
106
A
CD1
ILE
110
0
Y
1
L
CG
LEU
125
A
CG
LEU
129
0
Y
1
L
CD1
LEU
125
A
CD1
LEU
129
0
Y
1
L
CD2
LEU
125
A
CD2
LEU
129
0
Y
1
L
OG1
THR
126
A
OG1
THR
130
0
Y
1
L
CG2
THR
126
A
CG2
THR
130
0
Y
1
L
OG
SER
127
A
OG
SER
131
0
Y
1
L
CG
GLN
156
A
CG
GLN
160
0
Y
1
L
CD
GLN
156
A
CD
GLN
160
0
Y
1
L
OE1
GLN
156
A
OE1
GLN
160
0
Y
1
L
NE2
GLN
156
A
NE2
GLN
160
0
Y
1
L
CG
ASN
157
A
CG
ASN
161
0
Y
1
L
OD1
ASN
157
A
OD1
ASN
161
0
Y
1
L
ND2
ASN
157
A
ND2
ASN
161
0
Y
1
L
CG
LEU
181
A
CG
LEU
185
0
Y
1
L
CD1
LEU
181
A
CD1
LEU
185
0
Y
1
L
CD2
LEU
181
A
CD2
LEU
185
0
Y
1
L
CG
LYS
183
A
CG
LYS
187
0
Y
1
L
CD
LYS
183
A
CD
LYS
187
0
Y
1
L
CE
LYS
183
A
CE
LYS
187
0
Y
1
L
NZ
LYS
183
A
NZ
LYS
187
0
Y
1
L
OG1
THR
197
A
OG1
THR
201
0
Y
1
L
CG2
THR
197
A
CG2
THR
201
0
Y
1
L
CG
ASN
212
A
CG
ASN
216
0
Y
1
L
OD1
ASN
212
A
OD1
ASN
216
0
Y
1
L
ND2
ASN
212
A
ND2
ASN
216
0
Y
1
H
OG
SER
113
B
OG
SER
120
0
Y
1
H
CG1
VAL
144
B
CG1
VAL
149
0
Y
1
H
CG2
VAL
144
B
CG2
VAL
149
0
Y
1
H
OG
SER
167
B
OG
SER
167
0
Y
1
H
OG1
THR
199
B
OG1
THR
194
0
Y
1
H
CG2
THR
199
B
CG2
THR
194
0
Y
1
H
OG
SER
203
B
OG
SER
197
0
Y
1
H
CG
GLU
204
B
CG
GLU
198
0
Y
1
H
CD
GLU
204
B
CD
GLU
198
0
Y
1
H
OE1
GLU
204
B
OE1
GLU
198
0
Y
1
H
OE2
GLU
204
B
OE2
GLU
198
0
Y
1
H
OG1
THR
205
B
OG1
THR
199
0
Y
1
H
CG2
THR
205
B
CG2
THR
199
0
Y
1
H
OG1
THR
207
B
OG1
THR
201
0
Y
1
H
CG2
THR
207
B
CG2
THR
201
0
Y
1
H
CG
ASN
209
B
CG
ASN
203
0
Y
1
H
OD1
ASN
209
B
OD1
ASN
203
0
Y
1
H
ND2
ASN
209
B
ND2
ASN
203
0
Y
1
H
OG
SER
215
B
OG
SER
209
0
Y
1
H
OG
SER
216
B
OG
SER
210
0
Y
1
H
OG1
THR
217
B
OG1
THR
211
0
Y
1
H
CG2
THR
217
B
CG2
THR
211
0
Y
1
H
CG
ASP
220
B
CG
ASP
214
0
Y
1
H
OD1
ASP
220
B
OD1
ASP
214
0
Y
1
H
OD2
ASP
220
B
OD2
ASP
214
0
Y
1
H
CG
LYS
222
B
CG
LYS
216
0
Y
1
H
CD
LYS
222
B
CD
LYS
216
0
Y
1
H
CE
LYS
222
B
CE
LYS
216
0
Y
1
H
NZ
LYS
222
B
NZ
LYS
216
0
Y
1
H
CG1
ILE
223
B
CG1
ILE
217
0
Y
1
H
CG2
ILE
223
B
CG2
ILE
217
0
Y
1
H
CD1
ILE
223
B
CD1
ILE
217
0
Y
1
L
ASP
1
A
ASP
1
1
Y
1
L
GLU
213
A
GLU
217
1
Y
1
H
ASN
135
B
ASN
140
1
Y
1
H
VAL
193
B
VAL
190
1
Y
1
H
PRO
194
B
PRO
191
1
Y
1
H
SER
195
B
SER
192
1
Y
1
2.28
0.30
108.30
110.58
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
E
1
L
SER
27
-58.73
-2.24
1
L
VAL
51
71.45
-53.08
1
L
ARG
61
-66.51
2.97
1
L
HIS
93
62.81
-118.97
1
L
PRO
113
-57.96
108.57
1
L
SER
116
-160.37
112.62
1
L
ASN
138
45.18
86.80
1
L
ASP
151
70.99
44.43
1
L
ASN
190
-135.95
-38.25
1
L
PRO
204
-57.00
175.16
1
L
ARG
211
-51.99
23.71
1
H
THR
9
-37.74
153.14
1
H
ASN
54
-142.37
13.89
1
H
SER
74
-49.45
-16.88
1
H
ALA
88
173.33
-179.08
1
H
SER
100
178.84
141.56
J
1
H
ALA
100
-179.98
-172.16
1
H
SER
128
59.35
71.49
1
H
ALA
129
-146.08
-2.84
1
H
PRO
149
-103.10
-169.22
1
H
GLN
179
-114.96
76.52
1
H
SER
180
68.35
87.33
1
H
ASP
183
60.27
-14.96
1
H
PRO
227
-44.45
174.19
protein_rep.param
protein.top
dna-rna_rep.param
dna-rna.top
t64b.param
t64b.top
water_rep.param
water.top
nco_xplor_par.txt
nco_xplor_top.txt
54.8
-7.77
0.00
0.00
-7.77
0.00
15.53
BULK SOLVENT MODEL USED
0.290
0.006
0.247
0.247
2.50
28.26
1993
20294
9.8
96.6
RANDOM
573129.69
0.000000
1
RESTRAINED
THROUGHOUT
3.0
MOLECULAR REPLACEMENT
PDB entry 1KEG
Engh & Huber
FLAT MODEL
48.1259
0.3
0.44
0.35
5.00
0.44
0.26
2.50
28.26
144
4190
7
732
3307
0.009
1.4
25.6
1.12
4.86
1.50
7.01
2.00
7.02
2.00
9.40
2.50
0.421
0.023
0.324
2.66
322
2916
6
9.9
95.1
49.1
2.5
30.0
3VW3
20541
0.054
1
60.7
10.5
97.1
0.240
2.50
2.59
16.0
1
97.2
data reduction
DENZO
refinement
CNS
data scaling
SCALEPACK
phasing
CNS
Antibody 64M-5 Fab in complex with a double-stranded DNA (6-4) photoproduct
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
L
GLU
79
A
GLU
84
HELX_P
L
LEU
83
A
LEU
88
5
1
5
L
SER
121
A
SER
125
HELX_P
L
SER
127
A
SER
131
1
2
7
L
LYS
183
A
LYS
187
HELX_P
L
HIS
189
A
HIS
193
1
3
7
H
THR
28
B
THR
28
HELX_P
H
TYR
32
B
TYR
32
5
4
5
H
GLN
61
B
GLN
62
HELX_P
H
LYS
64
B
LYS
65
5
5
4
H
THR
73
B
THR
74
HELX_P
H
THR
75
B
THR
76
5
6
3
H
THR
83
B
THR
87
HELX_P
H
SER
87
B
SER
91
5
7
5
disulf
2.040
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
93
1_555
disulf
2.031
L
CYS
134
A
SG
CYS
138
1_555
L
CYS
194
A
SG
CYS
198
1_555
disulf
2.043
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
96
1_555
disulf
2.034
H
CYS
142
B
SG
CYS
147
1_555
H
CYS
208
B
SG
CYS
202
1_555
covale
1.595
both
A
DA
8
C
O3'
DA
8
1_555
A
64T
9
C
P
64T
9
1_555
covale
1.598
both
A
64T
9
C
O3'
64T
9
1_555
A
5PY
10
C
P
5PY
10
1_555
covale
1.527
none
A
64T
9
C
C6
64T
9
1_555
A
5PY
10
C
C4
5PY
10
1_555
covale
1.605
both
A
5PY
10
C
O3'
5PY
10
1_555
A
DA
11
C
P
DA
11
1_555
hydrog
WATSON-CRICK
A
DC
2
C
N3
DC
2
1_555
B
DG
18
D
N1
DG
18
1_555
hydrog
WATSON-CRICK
A
DC
2
C
N4
DC
2
1_555
B
DG
18
D
O6
DG
18
1_555
hydrog
WATSON-CRICK
A
DC
2
C
O2
DC
2
1_555
B
DG
18
D
N2
DG
18
1_555
hydrog
WATSON-CRICK
A
DG
3
C
N1
DG
3
1_555
B
DC
17
D
N3
DC
17
1_555
hydrog
WATSON-CRICK
A
DG
3
C
N2
DG
3
1_555
B
DC
17
D
O2
DC
17
1_555
hydrog
WATSON-CRICK
A
DG
3
C
O6
DG
3
1_555
B
DC
17
D
N4
DC
17
1_555
hydrog
WATSON-CRICK
A
DA
4
C
N1
DA
4
1_555
B
DT
16
D
N3
DT
16
1_555
hydrog
WATSON-CRICK
A
DA
4
C
N6
DA
4
1_555
B
DT
16
D
O4
DT
16
1_555
hydrog
WATSON-CRICK
A
DG
5
C
N1
DG
5
1_555
B
DC
15
D
N3
DC
15
1_555
hydrog
WATSON-CRICK
A
DG
5
C
N2
DG
5
1_555
B
DC
15
D
O2
DC
15
1_555
hydrog
WATSON-CRICK
A
DG
5
C
O6
DG
5
1_555
B
DC
15
D
N4
DC
15
1_555
hydrog
WATSON-CRICK
A
DT
6
C
N3
DT
6
1_555
B
DA
14
D
N1
DA
14
1_555
hydrog
WATSON-CRICK
A
DT
6
C
O4
DT
6
1_555
B
DA
14
D
N6
DA
14
1_555
hydrog
WATSON-CRICK
A
DG
7
C
N1
DG
7
1_555
B
DC
13
D
N3
DC
13
1_555
hydrog
WATSON-CRICK
A
DG
7
C
N2
DG
7
1_555
B
DC
13
D
O2
DC
13
1_555
hydrog
WATSON-CRICK
A
DG
7
C
O6
DG
7
1_555
B
DC
13
D
N4
DC
13
1_555
hydrog
WATSON-CRICK
A
DT
12
C
N3
DT
12
1_555
B
DA
8
D
N1
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
12
C
O4
DT
12
1_555
B
DA
8
D
N6
DA
8
1_555
hydrog
WATSON-CRICK
A
DG
13
C
N1
DG
13
1_555
B
DC
7
D
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
13
C
N2
DG
13
1_555
B
DC
7
D
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
13
C
O6
DG
13
1_555
B
DC
7
D
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
14
C
N1
DG
14
1_555
B
DC
6
D
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
14
C
N2
DG
14
1_555
B
DC
6
D
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
14
C
O6
DG
14
1_555
B
DC
6
D
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DA
15
C
N1
DA
15
1_555
B
DT
5
D
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
15
C
N6
DA
15
1_555
B
DT
5
D
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DC
16
C
N3
DC
16
1_555
B
DG
4
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
16
C
N4
DC
16
1_555
B
DG
4
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
16
C
O2
DC
16
1_555
B
DG
4
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
17
C
N1
DG
17
1_555
B
DC
3
D
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
17
C
N2
DG
17
1_555
B
DC
3
D
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
17
C
O6
DG
17
1_555
B
DC
3
D
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
18
C
N1
DG
18
1_555
B
DC
2
D
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
18
C
N2
DG
18
1_555
B
DC
2
D
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
18
C
O6
DG
18
1_555
B
DC
2
D
N4
DC
2
1_555
IMMUNE SYSTEM/DNA
Protein-DNA complex, DNA (6-4) photoproduct, Immunoglobulin, IMMUNE SYSTEM-DNA complex
L
THR
7
A
THR
7
1
L
PRO
8
A
PRO
8
-0.40
L
TYR
140
A
TYR
144
1
L
PRO
141
A
PRO
145
0.09
H
PHE
148
B
PHE
153
1
H
PRO
149
B
PRO
154
-0.35
H
GLU
150
B
GLU
155
1
H
PRO
151
B
PRO
156
-0.31
H
TRP
200
B
TRP
195
1
H
PRO
202
B
PRO
196
-0.67
3VW3
PDB
1
3VW3
3VW3
PDB
2
3VW3
3VW3
PDB
3
3VW3
3VW3
PDB
4
3VW3
1
213
3VW3
1
213
3VW3
L
1
1
217
1
228
3VW3
1
228
3VW3
H
2
1
220
1
18
3VW3
1
18
3VW3
A
3
1
18
1
18
3VW3
1
18
3VW3
B
4
1
18
4
6
4
4
4
4
6
4
4
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
A
MET
4
L
THR
7
A
THR
7
L
ALA
19
A
ALA
19
L
SER
25
A
SER
25
L
ASP
70
A
ASP
75
L
ILE
75
A
ILE
80
L
PHE
62
A
PHE
67
L
SER
67
A
SER
72
L
SER
10
A
SER
10
L
VAL
13
A
VAL
13
L
THR
102
A
THR
106
L
ILE
106
A
ILE
110
L
GLY
84
A
GLY
89
L
ARG
90
A
ARG
95
L
LEU
33
A
LEU
38
L
GLN
38
A
GLN
43
L
LYS
45
A
LYS
50
L
TYR
49
A
TYR
54
L
ASN
53
A
ASN
58
L
ARG
54
A
ARG
59
L
SER
10
A
SER
10
L
VAL
13
A
VAL
13
L
THR
102
A
THR
106
L
ILE
106
A
ILE
110
L
GLY
84
A
GLY
89
L
ARG
90
A
ARG
95
L
THR
97
A
THR
101
L
PHE
98
A
PHE
102
L
THR
114
A
THR
118
L
PHE
118
A
PHE
122
L
GLY
129
A
GLY
133
L
PHE
139
A
PHE
143
L
TYR
173
A
TYR
177
L
THR
182
A
THR
186
L
VAL
159
A
VAL
163
L
THR
164
A
THR
168
L
SER
153
A
SER
157
L
ARG
155
A
ARG
159
L
ILE
144
A
ILE
148
L
ILE
150
A
ILE
154
L
SER
191
A
SER
195
L
HIS
198
A
HIS
202
L
ILE
205
A
ILE
209
L
ASN
210
A
ASN
214
H
GLN
3
B
GLN
3
H
GLN
6
B
GLN
6
H
VAL
18
B
VAL
18
H
SER
25
B
SER
25
H
THR
77
B
THR
78
H
LEU
82
B
LEU
83
H
ALA
67
B
ALA
68
H
VAL
72
B
VAL
73
H
VAL
10
B
VAL
10
H
ALA
12
B
ALA
12
H
THR
107
B
THR
114
H
VAL
111
B
VAL
118
H
ALA
88
B
ALA
92
H
ASN
96
B
ASN
100
H
MET
34
B
MET
34
H
GLN
39
B
GLN
39
H
GLU
46
B
GLU
46
H
ILE
51
B
ILE
51
H
THR
57
B
THR
58
H
TYR
59
B
TYR
60
H
VAL
10
B
VAL
10
H
ALA
12
B
ALA
12
H
THR
107
B
THR
114
H
VAL
111
B
VAL
118
H
ALA
88
B
ALA
92
H
ASN
96
B
ASN
100
H
ALA
100
B
ALA
106
H
TRP
103
B
TRP
110
J
H
TYR
122
B
TYR
129
H
LEU
124
B
LEU
131
H
LEU
140
B
LEU
145
H
TYR
147
B
TYR
152
H
TYR
185
B
TYR
182
H
VAL
191
B
VAL
188
H
VAL
171
B
VAL
170
H
THR
173
B
THR
172
H
TYR
122
B
TYR
129
H
LEU
124
B
LEU
131
H
LEU
140
B
LEU
145
H
TYR
147
B
TYR
152
H
TYR
185
B
TYR
182
H
VAL
191
B
VAL
188
H
VAL
177
B
VAL
176
H
LEU
178
B
LEU
177
H
THR
153
B
THR
158
H
TRP
157
B
TRP
161
H
THR
207
B
THR
201
H
HIS
212
B
HIS
206
H
THR
217
B
THR
211
H
LYS
222
B
LYS
216
BINDING SITE FOR RESIDUE NCO H 301
H
NCO
301
Software
4
A
DA
11
C
DA
11
4
1_555
H
ASP
56
B
ASP
57
4
1_555
H
THR
57
B
THR
58
4
1_555
H
THR
58
B
THR
59
4
1_555
96
P 43 21 2