0.022705 0.000000 0.000000 0.000000 0.013994 0.000000 0.000000 0.000000 0.005808 0.000000 0.000000 0.000000 Zhang, C. Srinivasan, Y. Arlow, D.H. Fung, J.J. Palmer, D. Zheng, Y. Green, H.F. Pandey, A. Dror, R.O. Shaw, D.E. Weis, W.I. Coughlin, S.R. Kobilka, B.K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 44.044 71.460 172.187 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C21 H40 O4 356.540 (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate 1-Oleoyl-R-glycerol non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C29 H33 F N2 O4 492.582 ethyl [(1R,3aR,4aR,6R,8aR,9S,9aS)-9-{(E)-2-[5-(3-fluorophenyl)pyridin-2-yl]ethenyl}-1-methyl-3-oxododecahydronaphtho[2,3-c]fur an-6-yl]carbamate vorapaxar non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N NA N 252 N C N 253 N C N 254 N C N 255 N C N 256 N C N 257 N C N 258 N C N 259 N C N 260 N C N 261 N C N 262 N C N 263 N C N 264 N C N 265 N C N 266 N C N 267 N C N 268 N C N 269 N C N 270 N C N 271 N C N 272 R C N 273 N O N 274 N O N 275 N O N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C N 345 N C N 346 N C N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C N 362 N O N 363 N O N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 R C N 376 N O N 377 N C N 378 N O N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 N C Y 393 N C Y 394 N C Y 395 N C Y 396 N N Y 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C N 402 N O N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N N N 416 S C N 417 N C N 418 N O N 419 N C Y 420 N C Y 421 N C Y 422 N C Y 423 N C Y 424 N C Y 425 N C N 426 N O N 427 N O N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N N N 440 S C N 441 N C N 442 N O N 443 N C N 444 N C N 445 N C N 446 N O N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N C N 459 N C N 460 N O N 461 N C N 462 N O N 463 N N N 464 R C N 465 N C N 466 N C N 467 N C N 468 R C N 469 R C N 470 N C N 471 R C N 472 N C N 473 N O N 474 N O N 475 R C N 476 N C N 477 S C N 478 S C N 479 N C N 480 N C Y 481 N C Y 482 N C Y 483 N C Y 484 N N Y 485 N C Y 486 N C Y 487 N C Y 488 N C Y 489 N C N 490 N F Y 491 N C Y 492 N C Y 493 N C N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 Z sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing Y 312 N doub Y 313 N sing Y 314 N sing N 315 N sing Y 316 N doub N 317 N sing Y 318 N doub N 319 N sing Y 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing Y 381 N doub Y 382 N sing Y 383 N sing N 384 N sing Y 385 N doub Y 386 N sing Y 387 N sing N 388 N sing Y 389 N sing Y 390 N doub N 391 N sing Y 392 N doub N 393 N sing Y 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing Y 409 N doub Y 410 N sing Y 411 N sing N 412 N sing Y 413 N doub N 414 N sing Y 415 N doub N 416 N sing Y 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing Y 440 N doub Y 441 N sing Y 442 N sing Y 443 N doub N 444 N sing Y 445 N doub Y 446 N sing N 447 N sing Y 448 N doub Y 449 N sing Y 450 N sing Y 451 N doub Y 452 N doub N 453 N sing Y 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 E doub N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N doub N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing UK Nature NATUAS 0006 0028-0836 492 387 392 10.1038/nature11701 23222541 High-resolution crystal structure of human protease-activated receptor 1 2012 10.2210/pdb3vw7/pdb pdb_00003vw7 93 1 CCD 2012-02-18 MARMOSAIC 300 mm CCD Double crystal cryo-cooled Si(111) SINGLE WAVELENGTH M x-ray 1 1.033 1.0 23-ID-B APS 1.033 SYNCHROTRON APS BEAMLINE 23-ID-B Chimera protein of residues 86-395 form Proteinase-activated receptor 1 (P25116, PAR1_HUMAN), Lyzosyme from Enterobacteria phage T4 (P00720, LYS_BPT4) and residues 303-395 from Proteinase-activated receptor 1 (P25116, PAR1_HUMAN) 54338.980 Proteinase-activated receptor 1, Lysozyme 3.2.1.17 N250G, N259S, D1020N, C1054T, C1097A 1 man polymer 492.582 ethyl [(1R,3aR,4aR,6R,8aR,9S,9aS)-9-{(E)-2-[5-(3-fluorophenyl)pyridin-2-yl]ethenyl}-1-methyl-3-oxododecahydronaphtho[2,3-c]fur an-6-yl]carbamate 1 syn non-polymer 356.540 (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate 9 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 91 nat water PAR-1, Coagulation factor II receptor, Thrombin receptor, Endolysin, Lysis protein, Muramidase no no SGTAFISEDASGYLTSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYY FSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQ TIQVPGLGITTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFEMLRIDEGLRLKIYKNTE GYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINM VFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYANRSKKSRALFLSAAVFCIFI ICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCCKESSDPSCYHHHHHH HHHH SGTAFISEDASGYLTSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYY FSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQ TIQVPGLGITTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFEMLRIDEGLRLKIYKNTE GYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINM VFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYANRSKKSRALFLSAAVFCIFI ICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCCKESSDPSCYHHHHHH HHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 4 219 9606 Homo sapiens 7108 Spodoptera frugiperda baculovirus human sample 220 379 10665 Enterobacteria phage T4 7108 Spodoptera frugiperda baculovirus human sample 380 472 9606 Homo sapiens 7108 Spodoptera frugiperda baculovirus 18 2.49 50.67 0.1-0.2M sodium chloride, 100mM sodium phosphate pH 6.0-6.5, 25%-35% PEG 300, Lipidic cubic phase (in meso phase), temperature 293K 6.0-6.5 293 entity_src_gen pdbx_unobs_or_zero_occ_atoms software chem_comp chem_comp_atom chem_comp_bond database_2 entity pdbx_entity_nonpoly pdbx_initial_refinement_model pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_atoms struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Advisory Source and taxonomy Refinement description Advisory Data collection Database references Derived calculations Refinement description Structure summary 1 0 2012-12-12 1 1 2013-08-14 1 2 2017-08-16 1 3 2017-11-22 1 4 2023-11-08 _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version _chem_comp.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.pdbx_description _pdbx_entity_nonpoly.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBJ Y PDBJ 2012-08-07 REL REL VPX ethyl [(1R,3aR,4aR,6R,8aR,9S,9aS)-9-{(E)-2-[5-(3-fluorophenyl)pyridin-2-yl]ethenyl}-1-methyl-3-oxododecahydronaphtho[2,3-c]fur an-6-yl]carbamate OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate CL CHLORIDE ION NA SODIUM ION HOH water 3ODU PDB code 3ODU PDB experimental model VPX 2001 2 VPX VPX 2001 A MOG 4001 3 OLC OLC 2002 A MOG 4002 3 OLC OLC 2003 A MOG 4003 3 OLC OLC 2004 A MOG 4004 3 OLC OLC 2005 A MOG 4005 3 OLC OLC 2006 A MOG 4006 3 OLC OLC 2007 A MOG 4007 3 OLC OLC 2008 A MOG 4008 3 OLC OLC 2009 A MOG 4009 3 OLC OLC 2010 A CL 5001 4 CL CL 2011 A NA 5002 5 NA NA 2012 A HOH 3001 6 HOH HOH 3001 A HOH 3003 6 HOH HOH 3002 A HOH 3004 6 HOH HOH 3003 A HOH 3005 6 HOH HOH 3004 A HOH 3006 6 HOH HOH 3005 A HOH 3007 6 HOH HOH 3006 A HOH 3008 6 HOH HOH 3007 A HOH 3009 6 HOH HOH 3008 A HOH 3010 6 HOH HOH 3009 A HOH 3011 6 HOH HOH 3010 A HOH 3012 6 HOH HOH 3011 A HOH 3013 6 HOH HOH 3012 A HOH 3018 6 HOH HOH 3013 A HOH 3020 6 HOH HOH 3014 A HOH 3021 6 HOH HOH 3015 A HOH 3022 6 HOH HOH 3016 A HOH 3023 6 HOH HOH 3017 A HOH 3025 6 HOH HOH 3018 A HOH 3026 6 HOH HOH 3019 A HOH 3027 6 HOH HOH 3020 A HOH 3028 6 HOH HOH 3021 A HOH 3030 6 HOH HOH 3022 A HOH 3031 6 HOH HOH 3023 A HOH 3033 6 HOH HOH 3024 A HOH 3034 6 HOH HOH 3025 A HOH 3040 6 HOH HOH 3026 A HOH 3043 6 HOH HOH 3027 A HOH 3048 6 HOH HOH 3028 A HOH 3049 6 HOH HOH 3029 A HOH 3050 6 HOH HOH 3030 A HOH 3051 6 HOH HOH 3031 A HOH 3052 6 HOH HOH 3032 A HOH 3053 6 HOH HOH 3033 A HOH 3054 6 HOH HOH 3034 A HOH 3055 6 HOH HOH 3035 A HOH 3056 6 HOH HOH 3036 A HOH 3058 6 HOH HOH 3037 A HOH 3059 6 HOH HOH 3038 A HOH 3060 6 HOH HOH 3039 A HOH 3061 6 HOH HOH 3040 A HOH 3064 6 HOH HOH 3041 A HOH 3065 6 HOH HOH 3042 A HOH 3067 6 HOH HOH 3043 A HOH 3068 6 HOH HOH 3044 A HOH 3069 6 HOH HOH 3045 A HOH 3070 6 HOH HOH 3046 A HOH 3071 6 HOH HOH 3047 A HOH 3072 6 HOH HOH 3048 A HOH 3073 6 HOH HOH 3049 A HOH 3076 6 HOH HOH 3050 A HOH 3078 6 HOH HOH 3051 A HOH 3079 6 HOH HOH 3052 A HOH 3081 6 HOH HOH 3053 A HOH 3082 6 HOH HOH 3054 A HOH 3083 6 HOH HOH 3055 A HOH 3084 6 HOH HOH 3056 A HOH 3085 6 HOH HOH 3057 A HOH 3086 6 HOH HOH 3058 A HOH 3087 6 HOH HOH 3059 A HOH 3088 6 HOH HOH 3060 A HOH 3089 6 HOH HOH 3061 A HOH 3090 6 HOH HOH 3062 A HOH 3091 6 HOH HOH 3063 A HOH 3092 6 HOH HOH 3064 A HOH 3101 6 HOH HOH 3065 A HOH 3103 6 HOH HOH 3066 A HOH 3104 6 HOH HOH 3067 A HOH 3105 6 HOH HOH 3068 A HOH 3106 6 HOH HOH 3069 A HOH 3108 6 HOH HOH 3070 A HOH 3109 6 HOH HOH 3071 A HOH 3110 6 HOH HOH 3072 A HOH 3111 6 HOH HOH 3073 A HOH 3112 6 HOH HOH 3074 A HOH 3114 6 HOH HOH 3075 A HOH 3115 6 HOH HOH 3076 A HOH 3116 6 HOH HOH 3077 A HOH 3117 6 HOH HOH 3078 A HOH 3118 6 HOH HOH 3079 A HOH 3119 6 HOH HOH 3080 A HOH 3120 6 HOH HOH 3081 A HOH 3121 6 HOH HOH 3082 A HOH 3122 6 HOH HOH 3083 A HOH 3123 6 HOH HOH 3084 A HOH 3124 6 HOH HOH 3085 A HOH 3125 6 HOH HOH 3086 A HOH 3126 6 HOH HOH 3087 A HOH 3127 6 HOH HOH 3088 A HOH 3128 6 HOH HOH 3089 A HOH 3129 6 HOH HOH 3090 A HOH 3130 6 HOH HOH 3091 A n 1 83 A n 2 84 A n 3 85 A n 4 86 A n 5 87 A n 6 88 A n 7 89 A n 8 90 A ASP 91 n 9 ASP 91 A ALA 92 n 10 ALA 92 A SER 93 n 11 SER 93 A GLY 94 n 12 GLY 94 A TYR 95 n 13 TYR 95 A LEU 96 n 14 LEU 96 A THR 97 n 15 THR 97 A SER 98 n 16 SER 98 A SER 99 n 17 SER 99 A TRP 100 n 18 TRP 100 A LEU 101 n 19 LEU 101 A THR 102 n 20 THR 102 A LEU 103 n 21 LEU 103 A PHE 104 n 22 PHE 104 A VAL 105 n 23 VAL 105 A PRO 106 n 24 PRO 106 A SER 107 n 25 SER 107 A VAL 108 n 26 VAL 108 A TYR 109 n 27 TYR 109 A THR 110 n 28 THR 110 A GLY 111 n 29 GLY 111 A VAL 112 n 30 VAL 112 A PHE 113 n 31 PHE 113 A VAL 114 n 32 VAL 114 A VAL 115 n 33 VAL 115 A SER 116 n 34 SER 116 A LEU 117 n 35 LEU 117 A PRO 118 n 36 PRO 118 A LEU 119 n 37 LEU 119 A ASN 120 n 38 ASN 120 A ILE 121 n 39 ILE 121 A MET 122 n 40 MET 122 A ALA 123 n 41 ALA 123 A ILE 124 n 42 ILE 124 A VAL 125 n 43 VAL 125 A VAL 126 n 44 VAL 126 A PHE 127 n 45 PHE 127 A ILE 128 n 46 ILE 128 A LEU 129 n 47 LEU 129 A LYS 130 n 48 LYS 130 A MET 131 n 49 MET 131 A LYS 132 n 50 LYS 132 A VAL 133 n 51 VAL 133 A LYS 134 n 52 LYS 134 A LYS 135 n 53 LYS 135 A PRO 136 n 54 PRO 136 A ALA 137 n 55 ALA 137 A VAL 138 n 56 VAL 138 A VAL 139 n 57 VAL 139 A TYR 140 n 58 TYR 140 A MET 141 n 59 MET 141 A LEU 142 n 60 LEU 142 A HIS 143 n 61 HIS 143 A LEU 144 n 62 LEU 144 A ALA 145 n 63 ALA 145 A THR 146 n 64 THR 146 A ALA 147 n 65 ALA 147 A ASP 148 n 66 ASP 148 A VAL 149 n 67 VAL 149 A LEU 150 n 68 LEU 150 A PHE 151 n 69 PHE 151 A VAL 152 n 70 VAL 152 A SER 153 n 71 SER 153 A VAL 154 n 72 VAL 154 A LEU 155 n 73 LEU 155 A PRO 156 n 74 PRO 156 A PHE 157 n 75 PHE 157 A LYS 158 n 76 LYS 158 A ILE 159 n 77 ILE 159 A SER 160 n 78 SER 160 A TYR 161 n 79 TYR 161 A TYR 162 n 80 TYR 162 A PHE 163 n 81 PHE 163 A SER 164 n 82 SER 164 A GLY 165 n 83 GLY 165 A SER 166 n 84 SER 166 A ASP 167 n 85 ASP 167 A TRP 168 n 86 TRP 168 A GLN 169 n 87 GLN 169 A PHE 170 n 88 PHE 170 A GLY 171 n 89 GLY 171 A SER 172 n 90 SER 172 A GLU 173 n 91 GLU 173 A LEU 174 n 92 LEU 174 A CYS 175 n 93 CYS 175 A ARG 176 n 94 ARG 176 A PHE 177 n 95 PHE 177 A VAL 178 n 96 VAL 178 A THR 179 n 97 THR 179 A ALA 180 n 98 ALA 180 A ALA 181 n 99 ALA 181 A PHE 182 n 100 PHE 182 A TYR 183 n 101 TYR 183 A CYS 184 n 102 CYS 184 A ASN 185 n 103 ASN 185 A MET 186 n 104 MET 186 A TYR 187 n 105 TYR 187 A ALA 188 n 106 ALA 188 A SER 189 n 107 SER 189 A ILE 190 n 108 ILE 190 A LEU 191 n 109 LEU 191 A LEU 192 n 110 LEU 192 A MET 193 n 111 MET 193 A THR 194 n 112 THR 194 A VAL 195 n 113 VAL 195 A ILE 196 n 114 ILE 196 A SER 197 n 115 SER 197 A ILE 198 n 116 ILE 198 A ASP 199 n 117 ASP 199 A ARG 200 n 118 ARG 200 A PHE 201 n 119 PHE 201 A LEU 202 n 120 LEU 202 A ALA 203 n 121 ALA 203 A VAL 204 n 122 VAL 204 A VAL 205 n 123 VAL 205 A TYR 206 n 124 TYR 206 A PRO 207 n 125 PRO 207 A MET 208 n 126 MET 208 A n 127 209 A n 128 210 A n 129 211 A n 130 212 A n 131 213 A ARG 214 n 132 ARG 214 A THR 215 n 133 THR 215 A LEU 216 n 134 LEU 216 A GLY 217 n 135 GLY 217 A ARG 218 n 136 ARG 218 A ALA 219 n 137 ALA 219 A SER 220 n 138 SER 220 A PHE 221 n 139 PHE 221 A THR 222 n 140 THR 222 A CYS 223 n 141 CYS 223 A LEU 224 n 142 LEU 224 A ALA 225 n 143 ALA 225 A ILE 226 n 144 ILE 226 A TRP 227 n 145 TRP 227 A ALA 228 n 146 ALA 228 A LEU 229 n 147 LEU 229 A ALA 230 n 148 ALA 230 A ILE 231 n 149 ILE 231 A ALA 232 n 150 ALA 232 A GLY 233 n 151 GLY 233 A VAL 234 n 152 VAL 234 A VAL 235 n 153 VAL 235 A PRO 236 n 154 PRO 236 A LEU 237 n 155 LEU 237 A LEU 238 n 156 LEU 238 A LEU 239 n 157 LEU 239 A LYS 240 n 158 LYS 240 A GLU 241 n 159 GLU 241 A GLN 242 n 160 GLN 242 A THR 243 n 161 THR 243 A ILE 244 n 162 ILE 244 A GLN 245 n 163 GLN 245 A VAL 246 n 164 VAL 246 A PRO 247 n 165 PRO 247 A GLY 248 n 166 GLY 248 A LEU 249 n 167 LEU 249 A GLY 250 n 168 GLY 250 A ILE 251 n 169 ILE 251 A THR 252 n 170 THR 252 A THR 253 n 171 THR 253 A CYS 254 n 172 CYS 254 A HIS 255 n 173 HIS 255 A ASP 256 n 174 ASP 256 A VAL 257 n 175 VAL 257 A LEU 258 n 176 LEU 258 A SER 259 n 177 SER 259 A GLU 260 n 178 GLU 260 A THR 261 n 179 THR 261 A LEU 262 n 180 LEU 262 A LEU 263 n 181 LEU 263 A GLU 264 n 182 GLU 264 A GLY 265 n 183 GLY 265 A TYR 266 n 184 TYR 266 A TYR 267 n 185 TYR 267 A ALA 268 n 186 ALA 268 A TYR 269 n 187 TYR 269 A TYR 270 n 188 TYR 270 A PHE 271 n 189 PHE 271 A SER 272 n 190 SER 272 A ALA 273 n 191 ALA 273 A PHE 274 n 192 PHE 274 A SER 275 n 193 SER 275 A ALA 276 n 194 ALA 276 A VAL 277 n 195 VAL 277 A PHE 278 n 196 PHE 278 A PHE 279 n 197 PHE 279 A PHE 280 n 198 PHE 280 A VAL 281 n 199 VAL 281 A PRO 282 n 200 PRO 282 A LEU 283 n 201 LEU 283 A ILE 284 n 202 ILE 284 A ILE 285 n 203 ILE 285 A SER 286 n 204 SER 286 A THR 287 n 205 THR 287 A VAL 288 n 206 VAL 288 A CYS 289 n 207 CYS 289 A TYR 290 n 208 TYR 290 A VAL 291 n 209 VAL 291 A SER 292 n 210 SER 292 A ILE 293 n 211 ILE 293 A ILE 294 n 212 ILE 294 A ARG 295 n 213 ARG 295 A CYS 296 n 214 CYS 296 A LEU 297 n 215 LEU 297 A SER 298 n 216 SER 298 A SER 299 n 217 SER 299 A SER 300 n 218 SER 300 A ALA 301 n 219 ALA 301 A ASN 1002 n 220 ASN 1002 A ILE 1003 n 221 ILE 1003 A PHE 1004 n 222 PHE 1004 A GLU 1005 n 223 GLU 1005 A MET 1006 n 224 MET 1006 A LEU 1007 n 225 LEU 1007 A ARG 1008 n 226 ARG 1008 A ILE 1009 n 227 ILE 1009 A ASP 1010 n 228 ASP 1010 A GLU 1011 n 229 GLU 1011 A GLY 1012 n 230 GLY 1012 A LEU 1013 n 231 LEU 1013 A ARG 1014 n 232 ARG 1014 A LEU 1015 n 233 LEU 1015 A LYS 1016 n 234 LYS 1016 A ILE 1017 n 235 ILE 1017 A TYR 1018 n 236 TYR 1018 A LYS 1019 n 237 LYS 1019 A ASN 1020 n 238 ASN 1020 A THR 1021 n 239 THR 1021 A GLU 1022 n 240 GLU 1022 A GLY 1023 n 241 GLY 1023 A TYR 1024 n 242 TYR 1024 A TYR 1025 n 243 TYR 1025 A THR 1026 n 244 THR 1026 A ILE 1027 n 245 ILE 1027 A GLY 1028 n 246 GLY 1028 A ILE 1029 n 247 ILE 1029 A GLY 1030 n 248 GLY 1030 A HIS 1031 n 249 HIS 1031 A LEU 1032 n 250 LEU 1032 A LEU 1033 n 251 LEU 1033 A THR 1034 n 252 THR 1034 A LYS 1035 n 253 LYS 1035 A SER 1036 n 254 SER 1036 A PRO 1037 n 255 PRO 1037 A SER 1038 n 256 SER 1038 A LEU 1039 n 257 LEU 1039 A ASN 1040 n 258 ASN 1040 A ALA 1041 n 259 ALA 1041 A ALA 1042 n 260 ALA 1042 A LYS 1043 n 261 LYS 1043 A SER 1044 n 262 SER 1044 A GLU 1045 n 263 GLU 1045 A LEU 1046 n 264 LEU 1046 A ASP 1047 n 265 ASP 1047 A LYS 1048 n 266 LYS 1048 A ALA 1049 n 267 ALA 1049 A ILE 1050 n 268 ILE 1050 A GLY 1051 n 269 GLY 1051 A ARG 1052 n 270 ARG 1052 A ASN 1053 n 271 ASN 1053 A THR 1054 n 272 THR 1054 A ASN 1055 n 273 ASN 1055 A GLY 1056 n 274 GLY 1056 A VAL 1057 n 275 VAL 1057 A ILE 1058 n 276 ILE 1058 A THR 1059 n 277 THR 1059 A LYS 1060 n 278 LYS 1060 A ASP 1061 n 279 ASP 1061 A GLU 1062 n 280 GLU 1062 A ALA 1063 n 281 ALA 1063 A GLU 1064 n 282 GLU 1064 A LYS 1065 n 283 LYS 1065 A LEU 1066 n 284 LEU 1066 A PHE 1067 n 285 PHE 1067 A ASN 1068 n 286 ASN 1068 A GLN 1069 n 287 GLN 1069 A ASP 1070 n 288 ASP 1070 A VAL 1071 n 289 VAL 1071 A ASP 1072 n 290 ASP 1072 A ALA 1073 n 291 ALA 1073 A ALA 1074 n 292 ALA 1074 A VAL 1075 n 293 VAL 1075 A ARG 1076 n 294 ARG 1076 A GLY 1077 n 295 GLY 1077 A ILE 1078 n 296 ILE 1078 A LEU 1079 n 297 LEU 1079 A ARG 1080 n 298 ARG 1080 A ASN 1081 n 299 ASN 1081 A ALA 1082 n 300 ALA 1082 A LYS 1083 n 301 LYS 1083 A LEU 1084 n 302 LEU 1084 A LYS 1085 n 303 LYS 1085 A PRO 1086 n 304 PRO 1086 A VAL 1087 n 305 VAL 1087 A TYR 1088 n 306 TYR 1088 A ASP 1089 n 307 ASP 1089 A SER 1090 n 308 SER 1090 A LEU 1091 n 309 LEU 1091 A ASP 1092 n 310 ASP 1092 A ALA 1093 n 311 ALA 1093 A VAL 1094 n 312 VAL 1094 A ARG 1095 n 313 ARG 1095 A ARG 1096 n 314 ARG 1096 A ALA 1097 n 315 ALA 1097 A ALA 1098 n 316 ALA 1098 A LEU 1099 n 317 LEU 1099 A ILE 1100 n 318 ILE 1100 A ASN 1101 n 319 ASN 1101 A MET 1102 n 320 MET 1102 A VAL 1103 n 321 VAL 1103 A PHE 1104 n 322 PHE 1104 A GLN 1105 n 323 GLN 1105 A MET 1106 n 324 MET 1106 A GLY 1107 n 325 GLY 1107 A GLU 1108 n 326 GLU 1108 A THR 1109 n 327 THR 1109 A GLY 1110 n 328 GLY 1110 A VAL 1111 n 329 VAL 1111 A ALA 1112 n 330 ALA 1112 A GLY 1113 n 331 GLY 1113 A PHE 1114 n 332 PHE 1114 A THR 1115 n 333 THR 1115 A ASN 1116 n 334 ASN 1116 A SER 1117 n 335 SER 1117 A LEU 1118 n 336 LEU 1118 A ARG 1119 n 337 ARG 1119 A MET 1120 n 338 MET 1120 A LEU 1121 n 339 LEU 1121 A GLN 1122 n 340 GLN 1122 A GLN 1123 n 341 GLN 1123 A LYS 1124 n 342 LYS 1124 A ARG 1125 n 343 ARG 1125 A TRP 1126 n 344 TRP 1126 A ASP 1127 n 345 ASP 1127 A GLU 1128 n 346 GLU 1128 A ALA 1129 n 347 ALA 1129 A ALA 1130 n 348 ALA 1130 A VAL 1131 n 349 VAL 1131 A ASN 1132 n 350 ASN 1132 A LEU 1133 n 351 LEU 1133 A ALA 1134 n 352 ALA 1134 A LYS 1135 n 353 LYS 1135 A SER 1136 n 354 SER 1136 A ARG 1137 n 355 ARG 1137 A TRP 1138 n 356 TRP 1138 A TYR 1139 n 357 TYR 1139 A ASN 1140 n 358 ASN 1140 A GLN 1141 n 359 GLN 1141 A THR 1142 n 360 THR 1142 A PRO 1143 n 361 PRO 1143 A ASN 1144 n 362 ASN 1144 A ARG 1145 n 363 ARG 1145 A ALA 1146 n 364 ALA 1146 A LYS 1147 n 365 LYS 1147 A ARG 1148 n 366 ARG 1148 A VAL 1149 n 367 VAL 1149 A ILE 1150 n 368 ILE 1150 A THR 1151 n 369 THR 1151 A THR 1152 n 370 THR 1152 A PHE 1153 n 371 PHE 1153 A ARG 1154 n 372 ARG 1154 A THR 1155 n 373 THR 1155 A GLY 1156 n 374 GLY 1156 A THR 1157 n 375 THR 1157 A TRP 1158 n 376 TRP 1158 A ASP 1159 n 377 ASP 1159 A ALA 1160 n 378 ALA 1160 A TYR 1161 n 379 TYR 1161 A ALA 303 n 380 ALA 303 A ASN 304 n 381 ASN 304 A ARG 305 n 382 ARG 305 A SER 306 n 383 SER 306 A LYS 307 n 384 LYS 307 A LYS 308 n 385 LYS 308 A SER 309 n 386 SER 309 A ARG 310 n 387 ARG 310 A ALA 311 n 388 ALA 311 A LEU 312 n 389 LEU 312 A PHE 313 n 390 PHE 313 A LEU 314 n 391 LEU 314 A SER 315 n 392 SER 315 A ALA 316 n 393 ALA 316 A ALA 317 n 394 ALA 317 A VAL 318 n 395 VAL 318 A PHE 319 n 396 PHE 319 A CYS 320 n 397 CYS 320 A ILE 321 n 398 ILE 321 A PHE 322 n 399 PHE 322 A ILE 323 n 400 ILE 323 A ILE 324 n 401 ILE 324 A CYS 325 n 402 CYS 325 A PHE 326 n 403 PHE 326 A GLY 327 n 404 GLY 327 A PRO 328 n 405 PRO 328 A THR 329 n 406 THR 329 A ASN 330 n 407 ASN 330 A VAL 331 n 408 VAL 331 A LEU 332 n 409 LEU 332 A LEU 333 n 410 LEU 333 A ILE 334 n 411 ILE 334 A ALA 335 n 412 ALA 335 A HIS 336 n 413 HIS 336 A TYR 337 n 414 TYR 337 A SER 338 n 415 SER 338 A PHE 339 n 416 PHE 339 A LEU 340 n 417 LEU 340 A SER 341 n 418 SER 341 A HIS 342 n 419 HIS 342 A THR 343 n 420 THR 343 A SER 344 n 421 SER 344 A THR 345 n 422 THR 345 A THR 346 n 423 THR 346 A GLU 347 n 424 GLU 347 A ALA 348 n 425 ALA 348 A ALA 349 n 426 ALA 349 A TYR 350 n 427 TYR 350 A PHE 351 n 428 PHE 351 A ALA 352 n 429 ALA 352 A TYR 353 n 430 TYR 353 A LEU 354 n 431 LEU 354 A LEU 355 n 432 LEU 355 A CYS 356 n 433 CYS 356 A VAL 357 n 434 VAL 357 A CYS 358 n 435 CYS 358 A VAL 359 n 436 VAL 359 A SER 360 n 437 SER 360 A SER 361 n 438 SER 361 A ILE 362 n 439 ILE 362 A SER 363 n 440 SER 363 A CYS 364 n 441 CYS 364 A CYS 365 n 442 CYS 365 A ILE 366 n 443 ILE 366 A ASP 367 n 444 ASP 367 A PRO 368 n 445 PRO 368 A LEU 369 n 446 LEU 369 A ILE 370 n 447 ILE 370 A TYR 371 n 448 TYR 371 A TYR 372 n 449 TYR 372 A TYR 373 n 450 TYR 373 A ALA 374 n 451 ALA 374 A SER 375 n 452 SER 375 A SER 376 n 453 SER 376 A GLU 377 n 454 GLU 377 A CYS 378 n 455 CYS 378 A n 456 379 A n 457 380 A n 458 381 A n 459 382 A n 460 383 A n 461 384 A n 462 385 A n 463 386 A n 464 387 A n 465 388 A n 466 389 A n 467 390 A n 468 391 A n 469 392 A n 470 393 A n 471 394 A n 472 395 A n 473 396 A n 474 397 A n 475 398 A n 476 399 A n 477 400 A n 478 401 A n 479 402 A n 480 403 A n 481 404 A n 482 405 A n 483 406 A n 484 407 A 0.1412 0.0366 0.0877 0.1779 -0.1284 0.1878 -0.0052 0.0371 -0.0278 -0.0658 0.0116 0.0405 0.0231 0.0034 -0.0030 0.2563 0.0145 0.0126 0.2252 -0.0069 0.2419 refined -4.0967 -8.5829 27.7598 X-RAY DIFFRACTION A 91 A 5002 X-RAY DIFFRACTION 1 all author_and_software_defined_assembly PISA 1 monomeric A ASP 148 A OD2 ASP 66 1_555 A NA 2012 M NA NA 1_555 A SER 189 A OG SER 107 1_555 98.1 A ASP 148 A OD2 ASP 66 1_555 A NA 2012 M NA NA 1_555 A ASP 367 A OD2 ASP 444 1_555 77.4 A SER 189 A OG SER 107 1_555 A NA 2012 M NA NA 1_555 A ASP 367 A OD2 ASP 444 1_555 157.7 A ASP 148 A OD2 ASP 66 1_555 A NA 2012 M NA NA 1_555 A HOH 3065 N O HOH 1_555 84.5 A SER 189 A OG SER 107 1_555 A NA 2012 M NA NA 1_555 A HOH 3065 N O HOH 1_555 83.6 A ASP 367 A OD2 ASP 444 1_555 A NA 2012 M NA NA 1_555 A HOH 3065 N O HOH 1_555 117.2 A ASP 148 A OD2 ASP 66 1_555 A NA 2012 M NA NA 1_555 A HOH 3066 N O HOH 1_555 158.3 A SER 189 A OG SER 107 1_555 A NA 2012 M NA NA 1_555 A HOH 3066 N O HOH 1_555 97.5 A ASP 367 A OD2 ASP 444 1_555 A NA 2012 M NA NA 1_555 A HOH 3066 N O HOH 1_555 82.5 A HOH 3065 N O HOH 1_555 A NA 2012 M NA NA 1_555 A HOH 3066 N O HOH 1_555 112.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 246 A N VAL 164 A O ILE 251 A O ILE 169 A N ARG 1014 A N ARG 232 A O GLY 1028 A O GLY 246 A N TYR 1025 A N TYR 243 A O LEU 1033 A O LEU 251 1 A CD LYS 132 A CD LYS 50 0 Y 1 A CE LYS 132 A CE LYS 50 0 Y 1 A NZ LYS 132 A NZ LYS 50 0 Y 1 A CD1 LEU 216 A CD1 LEU 134 0 Y 1 A CD2 LEU 216 A CD2 LEU 134 0 Y 1 A CG LEU 297 A CG LEU 215 0 Y 1 A CD1 LEU 297 A CD1 LEU 215 0 Y 1 A CD2 LEU 297 A CD2 LEU 215 0 Y 1 A CG TYR 1024 A CG TYR 242 0 Y 1 A CD1 TYR 1024 A CD1 TYR 242 0 Y 1 A CD2 TYR 1024 A CD2 TYR 242 0 Y 1 A CE1 TYR 1024 A CE1 TYR 242 0 Y 1 A CE2 TYR 1024 A CE2 TYR 242 0 Y 1 A CZ TYR 1024 A CZ TYR 242 0 Y 1 A OH TYR 1024 A OH TYR 242 0 Y 1 A CD LYS 1048 A CD LYS 266 0 Y 1 A CE LYS 1048 A CE LYS 266 0 Y 1 A NZ LYS 1048 A NZ LYS 266 0 Y 1 A CG ARG 1137 A CG ARG 355 0 Y 1 A CD ARG 1137 A CD ARG 355 0 Y 1 A NE ARG 1137 A NE ARG 355 0 Y 1 A CZ ARG 1137 A CZ ARG 355 0 Y 1 A NH1 ARG 1137 A NH1 ARG 355 0 Y 1 A NH2 ARG 1137 A NH2 ARG 355 0 Y 1 A CD LYS 1147 A CD LYS 365 0 Y 1 A CE LYS 1147 A CE LYS 365 0 Y 1 A NZ LYS 1147 A NZ LYS 365 0 Y 1 A CG ARG 305 A CG ARG 382 0 Y 1 A CD ARG 305 A CD ARG 382 0 Y 1 A NE ARG 305 A NE ARG 382 0 Y 1 A CZ ARG 305 A CZ ARG 382 0 Y 1 A NH1 ARG 305 A NH1 ARG 382 0 Y 1 A NH2 ARG 305 A NH2 ARG 382 0 Y 1 A C8 OLC 2002 C C8 OLC 0 N 1 A C13 OLC 2002 C C13 OLC 0 N 1 A C14 OLC 2002 C C14 OLC 0 N 1 A C13 OLC 2003 D C13 OLC 0 N 1 A C14 OLC 2003 D C14 OLC 0 N 1 A C4 OLC 2004 E C4 OLC 0 N 1 A C3 OLC 2004 E C3 OLC 0 N 1 A C2 OLC 2004 E C2 OLC 0 N 1 A O20 OLC 2006 G O20 OLC 0 N 1 A C8 OLC 2010 K C8 OLC 0 N 1 A C7 OLC 2010 K C7 OLC 0 N 1 A C2 OLC 2010 K C2 OLC 0 N 1 A C1 OLC 2010 K C1 OLC 0 N 1 A SER 83 A SER 1 1 Y 1 A GLY 84 A GLY 2 1 Y 1 A THR 85 A THR 3 1 Y 1 A ALA 86 A ALA 4 1 Y 1 A PHE 87 A PHE 5 1 Y 1 A ILE 88 A ILE 6 1 Y 1 A SER 89 A SER 7 1 Y 1 A GLU 90 A GLU 8 1 Y 1 A GLN 209 A GLN 127 1 Y 1 A SER 210 A SER 128 1 Y 1 A LEU 211 A LEU 129 1 Y 1 A SER 212 A SER 130 1 Y 1 A TRP 213 A TRP 131 1 Y 1 A GLN 379 A GLN 456 1 Y 1 A ARG 380 A ARG 457 1 Y 1 A TYR 381 A TYR 458 1 Y 1 A VAL 382 A VAL 459 1 Y 1 A TYR 383 A TYR 460 1 Y 1 A SER 384 A SER 461 1 Y 1 A ILE 385 A ILE 462 1 Y 1 A LEU 386 A LEU 463 1 Y 1 A CYS 387 A CYS 464 1 Y 1 A CYS 388 A CYS 465 1 Y 1 A LYS 389 A LYS 466 1 Y 1 A GLU 390 A GLU 467 1 Y 1 A SER 391 A SER 468 1 Y 1 A SER 392 A SER 469 1 Y 1 A ASP 393 A ASP 470 1 Y 1 A PRO 394 A PRO 471 1 Y 1 A SER 395 A SER 472 1 Y 1 A CYS 396 A CYS 473 1 Y 1 A TYR 397 A TYR 474 1 Y 1 A HIS 398 A HIS 475 1 Y 1 A HIS 399 A HIS 476 1 Y 1 A HIS 400 A HIS 477 1 Y 1 A HIS 401 A HIS 478 1 Y 1 A HIS 402 A HIS 479 1 Y 1 A HIS 403 A HIS 480 1 Y 1 A HIS 404 A HIS 481 1 Y 1 A HIS 405 A HIS 482 1 Y 1 A HIS 406 A HIS 483 1 Y 1 A HIS 407 A HIS 484 1 Y 1 A A O N ASN GLY 1020 1023 2.14 1 A ARG 1125 14.02 1 A A C N LYS ARG 1124 1125 0.213 0.023 1.336 1.549 Y 1 A LEU 103 -129.81 -63.66 1 A MET 131 -34.49 -30.43 1 A TYR 206 -116.19 77.41 1 A LEU 1033 -90.81 -66.42 1 A PHE 1114 -97.96 33.18 1 A LYS 1124 83.23 10.12 1 A SER 338 -102.10 -78.10 224.910 46.5549 19.340 25.2010 -0.0000 -0.0000 -8.8018 0.0000 -16.3993 0.2350 0.2180 0.2188 0.2188 2.20 28.2730 1306 28455 25921 5.0400 91.0100 1.000 0.000 0.8116 0.2600 RANDOM 1 0.000 MOLECULAR REPLACEMENT 24.9600 0.8300 1.1000 PDB code 3ODU ML FLAT BULK SOLVENT MODEL 59.4320 0.3440 2.20 28.2730 91 3824 263 0 3470 0.008 3809 0.948 5111 0.060 586 0.006 611 14.965 1453 0.3808 0.3184 2.2874 110 2190 2300 9 75.0000 0.3101 0.2846 2.3915 136 2533 2669 9 85.0000 0.2611 0.2508 2.5175 141 2627 2768 9 89.0000 0.2337 0.2307 2.6751 133 2721 2854 9 92.0000 0.2455 0.2186 2.8814 165 2761 2926 9 93.0000 0.2713 0.2233 3.1711 159 2850 3009 9 95.0000 0.2553 0.2116 3.6291 143 2922 3065 9 97.0000 0.2074 0.1840 4.5692 161 2894 3055 9 96.0000 0.1828 0.2078 28.2755 158 3117 3275 9 97.0000 2.200 30.000 3VW7 28455 27181 1 1 0.135 1.284 1 7.200 4.800 95.600 0.575 2.200 2.250 1585 0.935 1 3.300 85.700 0.537 2.250 2.310 1717 0.968 1 3.600 91.700 0.504 2.310 2.370 1755 0.997 1 4.300 94.900 0.466 2.370 2.440 1782 1.010 1 4.600 95.700 0.404 2.440 2.520 1786 1.118 1 4.900 96.100 0.379 2.520 2.610 1809 1.093 1 4.900 96.300 0.301 2.610 2.710 1801 1.210 1 5.000 96.400 0.267 2.710 2.840 1801 1.245 1 5.100 97.000 0.241 2.840 2.990 1863 1.350 1 5.200 97.500 0.204 2.990 3.170 1840 1.390 1 5.200 97.700 0.153 3.170 3.420 1856 1.384 1 5.300 98.000 0.113 3.420 3.760 1875 1.352 1 5.300 98.500 0.103 3.760 4.300 1885 1.629 1 5.300 98.500 0.085 4.300 5.420 1783 1.576 1 5.100 91.000 0.066 5.420 30.000 2043 1.503 1 5.100 98.600 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.7_650 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection Locally modified Blu-Ice GUI interface to EPICS control data reduction HKL-2000 phasing PHENIX (phaser) Crystal structure of human protease-activated receptor 1 (PAR1) bound with antagonist vorapaxar at 2.2 angstrom 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N 6 N N A ASP 91 A ASP 9 HELX_P A THR 97 A THR 15 1 1 7 A SER 98 A SER 16 HELX_P A LEU 103 A LEU 21 1 2 6 A LEU 103 A LEU 21 HELX_P A MET 131 A MET 49 1 3 29 A LYS 132 A LYS 50 HELX_P A LYS 134 A LYS 52 5 4 3 A LYS 135 A LYS 53 HELX_P A SER 153 A SER 71 1 5 19 A VAL 154 A VAL 72 HELX_P A SER 164 A SER 82 1 6 11 A GLY 171 A GLY 89 HELX_P A TYR 206 A TYR 124 1 7 36 A THR 215 A THR 133 HELX_P A LEU 239 A LEU 157 1 8 25 A GLU 264 A GLU 182 HELX_P A LEU 297 A LEU 215 1 9 34 A ASN 1002 A ASN 220 HELX_P A GLY 1012 A GLY 230 1 10 11 A SER 1038 A SER 256 HELX_P A GLY 1051 A GLY 269 1 11 14 A THR 1059 A THR 277 HELX_P A ARG 1080 A ARG 298 1 12 22 A LEU 1084 A LEU 302 HELX_P A ASP 1089 A ASP 307 1 13 6 A ASP 1092 A ASP 310 HELX_P A GLY 1113 A GLY 331 1 14 22 A PHE 1114 A PHE 332 HELX_P A GLN 1123 A GLN 341 1 15 10 A ARG 1125 A ARG 343 HELX_P A ALA 1134 A ALA 352 1 16 10 A SER 1136 A SER 354 HELX_P A THR 1142 A THR 360 1 17 7 A THR 1142 A THR 360 HELX_P A GLY 1156 A GLY 374 1 18 15 A TRP 1158 A TRP 376 HELX_P A ASN 304 A ASN 381 1 19 6 A ASN 304 A ASN 381 HELX_P A CYS 325 A CYS 402 1 20 22 A PHE 326 A PHE 403 HELX_P A PHE 339 A PHE 416 1 21 14 A THR 346 A THR 423 HELX_P A SER 361 A SER 438 1 22 16 A ILE 362 A ILE 439 HELX_P A ALA 374 A ALA 451 1 23 13 disulf 2.042 A CYS 175 A SG CYS 93 1_555 A CYS 254 A SG CYS 172 1_555 metalc 2.817 A ASP 148 A OD2 ASP 66 1_555 A NA 2012 M NA NA 1_555 metalc 2.569 A SER 189 A OG SER 107 1_555 A NA 2012 M NA NA 1_555 metalc 2.400 A ASP 367 A OD2 ASP 444 1_555 A NA 2012 M NA NA 1_555 metalc 2.333 A NA 2012 M NA NA 1_555 A HOH 3065 N O HOH 1_555 metalc 2.429 A NA 2012 M NA NA 1_555 A HOH 3066 N O HOH 1_555 Signaling protein/antagonist High resolution structure, protease-activated receptor 1, inactive conformation, antagonist vorapaxar, G protein-coupled receptor, signaling protein, membrane protein, thrombin receptor-antagonist complex, Signaling protein-antagonist complex PAR1_HUMAN UNP 1 86 P25116 AFISEDASGYLTSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSG SDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQ VPGLNITTCHDVLNETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSA LYS_BPT4 UNP 1 2 P00720 NIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRN AKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAY PAR1_HUMAN UNP 1 303 P25116 ANRSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYV YSILCCKESSDPS 86 301 3VW7 86 301 P25116 A 1 4 219 2 161 3VW7 1002 1161 P00720 A 2 220 379 303 395 3VW7 303 395 P25116 A 3 380 472 1 expression tag SER 83 3VW7 A P25116 UNP 1 1 expression tag GLY 84 3VW7 A P25116 UNP 2 1 expression tag THR 85 3VW7 A P25116 UNP 3 1 ASN engineered mutation GLY 250 3VW7 A P25116 UNP 250 168 1 ASN engineered mutation SER 259 3VW7 A P25116 UNP 259 177 2 ASP engineered mutation ASN 1020 3VW7 A P00720 UNP 20 238 2 CYS engineered mutation THR 1054 3VW7 A P00720 UNP 54 272 2 CYS engineered mutation ALA 1097 3VW7 A P00720 UNP 97 315 3 expression tag CYS 396 3VW7 A P25116 UNP 473 3 expression tag TYR 397 3VW7 A P25116 UNP 474 3 expression tag HIS 398 3VW7 A P25116 UNP 475 3 expression tag HIS 399 3VW7 A P25116 UNP 476 3 expression tag HIS 400 3VW7 A P25116 UNP 477 3 expression tag HIS 401 3VW7 A P25116 UNP 478 3 expression tag HIS 402 3VW7 A P25116 UNP 479 3 expression tag HIS 403 3VW7 A P25116 UNP 480 3 expression tag HIS 404 3VW7 A P25116 UNP 481 3 expression tag HIS 405 3VW7 A P25116 UNP 482 3 expression tag HIS 406 3VW7 A P25116 UNP 483 3 expression tag HIS 407 3VW7 A P25116 UNP 484 2 3 anti-parallel anti-parallel anti-parallel A THR 243 A THR 161 A VAL 246 A VAL 164 A ILE 251 A ILE 169 A CYS 254 A CYS 172 A ARG 1014 A ARG 232 A LYS 1019 A LYS 237 A TYR 1025 A TYR 243 A GLY 1028 A GLY 246 A HIS 1031 A HIS 249 A THR 1034 A THR 252 BINDING SITE FOR RESIDUE VPX A 2001 A VPX 2001 Software 16 BINDING SITE FOR RESIDUE OLC A 2002 A OLC 2002 Software 5 BINDING SITE FOR RESIDUE OLC A 2003 A OLC 2003 Software 4 BINDING SITE FOR RESIDUE OLC A 2004 A OLC 2004 Software 10 BINDING SITE FOR RESIDUE OLC A 2005 A OLC 2005 Software 8 BINDING SITE FOR RESIDUE OLC A 2006 A OLC 2006 Software 6 BINDING SITE FOR RESIDUE OLC A 2007 A OLC 2007 Software 6 BINDING SITE FOR RESIDUE OLC A 2008 A OLC 2008 Software 5 BINDING SITE FOR RESIDUE OLC A 2009 A OLC 2009 Software 4 BINDING SITE FOR RESIDUE OLC A 2010 A OLC 2010 Software 4 BINDING SITE FOR RESIDUE CL A 2011 A CL 2011 Software 2 BINDING SITE FOR RESIDUE NA A 2012 A NA 2012 Software 6 A TYR 183 A TYR 101 16 1_555 A TYR 187 A TYR 105 16 1_555 A PRO 236 A PRO 154 16 1_555 A HIS 255 A HIS 173 16 1_555 A ASP 256 A ASP 174 16 1_555 A VAL 257 A VAL 175 16 1_555 A LEU 258 A LEU 176 16 1_555 A PHE 271 A PHE 189 16 1_555 A ARG 1080 A ARG 298 16 2_455 A LEU 332 A LEU 409 16 1_555 A LEU 333 A LEU 410 16 1_555 A TYR 337 A TYR 414 16 1_555 A ALA 349 A ALA 426 16 1_555 A TYR 350 A TYR 427 16 1_555 A TYR 353 A TYR 430 16 1_555 A HOH 3004 N HOH 16 1_555 A PHE 157 A PHE 75 5 3_555 A TYR 206 A TYR 124 5 1_555 A ILE 284 A ILE 202 5 1_555 A ARG 295 A ARG 213 5 1_555 A OLC 2003 D OLC 5 1_555 A SER 160 A SER 78 4 3_555 A SER 164 A SER 82 4 3_555 A OLC 2002 C OLC 4 1_555 A OLC 2004 E OLC 4 3_555 A PHE 113 A PHE 31 10 1_555 A PRO 156 A PRO 74 10 1_555 A SER 160 A SER 78 10 1_555 A PHE 163 A PHE 81 10 1_555 A SER 164 A SER 82 10 1_555 A LEU 202 A LEU 120 10 3_545 A LEU 229 A LEU 147 10 3_545 A PHE 278 A PHE 196 10 3_545 A OLC 2003 D OLC 10 3_545 A OLC 2010 K OLC 10 3_545 A MET 122 A MET 40 8 1_555 A VAL 126 A VAL 44 8 1_555 A PHE 127 A PHE 45 8 1_555 A CYS 365 A CYS 442 8 1_555 A PRO 368 A PRO 445 8 1_555 A TYR 371 A TYR 448 8 1_555 A TYR 372 A TYR 449 8 1_555 A SER 375 A SER 452 8 1_555 A TRP 100 A TRP 18 6 1_555 A PRO 328 A PRO 405 6 1_555 A ALA 348 A ALA 425 6 1_555 A PHE 351 A PHE 428 6 1_555 A CYS 356 A CYS 433 6 1_555 A HOH 3067 N HOH 6 1_555 A GLY 327 A GLY 404 6 1_555 A PRO 328 A PRO 405 6 1_555 A THR 343 A THR 420 6 1_555 A THR 346 A THR 423 6 1_555 A ALA 348 A ALA 425 6 1_555 A CYS 356 A CYS 433 6 1_555 A VAL 139 A VAL 57 5 1_555 A HIS 143 A HIS 61 5 1_555 A SER 220 A SER 138 5 1_555 A LEU 224 A LEU 142 5 1_555 A ALA 228 A ALA 146 5 1_555 A PRO 236 A PRO 154 4 1_555 A LYS 240 A LYS 158 4 1_555 A TYR 270 A TYR 188 4 1_555 A PHE 271 A PHE 189 4 1_555 A PHE 163 A PHE 81 4 3_555 A PHE 221 A PHE 139 4 1_555 A THR 222 A THR 140 4 1_555 A OLC 2004 E OLC 4 3_555 A LYS 135 A LYS 53 2 1_555 A LYS 307 A LYS 384 2 1_555 A LEU 144 A LEU 62 6 1_555 A ASP 148 A ASP 66 6 1_555 A SER 189 A SER 107 6 1_555 A ASP 367 A ASP 444 6 1_555 A HOH 3065 N HOH 6 1_555 A HOH 3066 N HOH 6 1_555 19 P 21 21 21