0.008410 0.004855 0.000000 0.000000 0.009711 0.000000 0.000000 0.000000 0.022198 0.00000 0.00000 0.00000 Yamaguchi, M. Matoba, K. Sawada, R. Fujioka, Y. Nakatogawa, H. Yamamoto, H. Kobashigawa, Y. Hoshida, H. Akada, R. Ohsumi, Y. Noda, N.N. Inagaki, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 118.908 118.908 45.050 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Nat.Struct.Mol.Biol. 1545-9985 19 1250 1256 10.1038/nsmb.2451 23142983 Noncanonical recognition and UBL loading of distinct E2s by autophagy-essential Atg7. 2012 10.2210/pdb3vx6/pdb pdb_00003vx6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-01-24 RAYONIX MX225HE Rotated-inclined double-crystal monochromator , Si (111) SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 BL41XU SPring-8 1.0000 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 32213.869 E1 1 man polymer 18.015 water 17 nat water no no GPHMMVSDLKFAPSFQSFVDSSFFHELSRLKLDIFKLDSDEKALYTQLDLNQFTSNVLAISLRDDSFQKPDNDEHNIILK GYLLNFNTIELFKNCNKIQFIKEKGQELLQRGLENDLNEIISFYMISFADLKKYKFYYWICMPSFQSDGATYQIISSKVI ASDSDISVSFIKQNVIIACVISGVIQKATPDNLKVCEKVVFKDFSHLKDIPSAVTKNILTVWSKLSPRETYTICFLRSDE SSFEAEIIINNGNNPSLKVSGWEKNGLGKLAPKSIDLSSLMDP GPHMMVSDLKFAPSFQSFVDSSFFHELSRLKLDIFKLDSDEKALYTQLDLNQFTSNVLAISLRDDSFQKPDNDEHNIILK GYLLNFNTIELFKNCNKIQFIKEKGQELLQRGLENDLNEIISFYMISFADLKKYKFYYWICMPSFQSDGATYQIISSKVI ASDSDISVSFIKQNVIIACVISGVIQKATPDNLKVCEKVVFKDFSHLKDIPSAVTKNILTVWSKLSPRETYTICFLRSDE SSFEAEIIINNGNNPSLKVSGWEKNGLGKLAPKSIDLSSLMDP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 4911 Kluyveromyces marxianus 562 Escherichia coli BL21 DE3 PLASMID pGBHPS 1 2.85 56.90 VAPOR DIFFUSION, SITTING DROP 5.6 2.0M ammonium sulfate, 0.2M potassium/sodium tartrate, 0.1M citrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond citation database_2 pdbx_initial_refinement_model repository Initial release Data collection Database references Refinement description 1 0 2012-11-14 1 1 2023-10-18 1 2 2023-11-08 _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _database_2.pdbx_DOI _database_2.pdbx_database_accession PDBJ Y PDBJ 2012-09-11 REL REL HOH water A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. 3VH1 PDB ENTRY 3VH1 PDB experimental model HOH 1 2 HOH HOH 301 A HOH 2 2 HOH HOH 302 A HOH 3 2 HOH HOH 303 A HOH 4 2 HOH HOH 304 A HOH 5 2 HOH HOH 305 A HOH 6 2 HOH HOH 306 A HOH 7 2 HOH HOH 307 A HOH 8 2 HOH HOH 308 A HOH 9 2 HOH HOH 309 A HOH 10 2 HOH HOH 310 A HOH 11 2 HOH HOH 311 A HOH 12 2 HOH HOH 312 A HOH 13 2 HOH HOH 313 A HOH 14 2 HOH HOH 314 A HOH 15 2 HOH HOH 315 A HOH 16 2 HOH HOH 316 A HOH 17 2 HOH HOH 317 A n 1 -3 A n 2 -2 A n 3 -1 A n 4 0 A n 5 1 A n 6 2 A n 7 3 A ASP 4 n 8 ASP 4 A LEU 5 n 9 LEU 5 A LYS 6 n 10 LYS 6 A PHE 7 n 11 PHE 7 A ALA 8 n 12 ALA 8 A PRO 9 n 13 PRO 9 A SER 10 n 14 SER 10 A PHE 11 n 15 PHE 11 A GLN 12 n 16 GLN 12 A SER 13 n 17 SER 13 A PHE 14 n 18 PHE 14 A VAL 15 n 19 VAL 15 A ASP 16 n 20 ASP 16 A SER 17 n 21 SER 17 A SER 18 n 22 SER 18 A PHE 19 n 23 PHE 19 A PHE 20 n 24 PHE 20 A HIS 21 n 25 HIS 21 A GLU 22 n 26 GLU 22 A LEU 23 n 27 LEU 23 A SER 24 n 28 SER 24 A ARG 25 n 29 ARG 25 A LEU 26 n 30 LEU 26 A LYS 27 n 31 LYS 27 A LEU 28 n 32 LEU 28 A ASP 29 n 33 ASP 29 A ILE 30 n 34 ILE 30 A PHE 31 n 35 PHE 31 A LYS 32 n 36 LYS 32 A LEU 33 n 37 LEU 33 A ASP 34 n 38 ASP 34 A SER 35 n 39 SER 35 A ASP 36 n 40 ASP 36 A GLU 37 n 41 GLU 37 A LYS 38 n 42 LYS 38 A ALA 39 n 43 ALA 39 A LEU 40 n 44 LEU 40 A TYR 41 n 45 TYR 41 A THR 42 n 46 THR 42 A GLN 43 n 47 GLN 43 A LEU 44 n 48 LEU 44 A ASP 45 n 49 ASP 45 A LEU 46 n 50 LEU 46 A ASN 47 n 51 ASN 47 A GLN 48 n 52 GLN 48 A PHE 49 n 53 PHE 49 A THR 50 n 54 THR 50 A SER 51 n 55 SER 51 A ASN 52 n 56 ASN 52 A VAL 53 n 57 VAL 53 A LEU 54 n 58 LEU 54 A ALA 55 n 59 ALA 55 A ILE 56 n 60 ILE 56 A SER 57 n 61 SER 57 A LEU 58 n 62 LEU 58 A ARG 59 n 63 ARG 59 A ASP 60 n 64 ASP 60 A ASP 61 n 65 ASP 61 A SER 62 n 66 SER 62 A PHE 63 n 67 PHE 63 A GLN 64 n 68 GLN 64 A LYS 65 n 69 LYS 65 A PRO 66 n 70 PRO 66 A ASP 67 n 71 ASP 67 A n 72 68 A n 73 69 A n 74 70 A HIS 71 n 75 HIS 71 A ASN 72 n 76 ASN 72 A ILE 73 n 77 ILE 73 A ILE 74 n 78 ILE 74 A LEU 75 n 79 LEU 75 A LYS 76 n 80 LYS 76 A GLY 77 n 81 GLY 77 A TYR 78 n 82 TYR 78 A LEU 79 n 83 LEU 79 A LEU 80 n 84 LEU 80 A ASN 81 n 85 ASN 81 A PHE 82 n 86 PHE 82 A ASN 83 n 87 ASN 83 A THR 84 n 88 THR 84 A ILE 85 n 89 ILE 85 A GLU 86 n 90 GLU 86 A LEU 87 n 91 LEU 87 A PHE 88 n 92 PHE 88 A LYS 89 n 93 LYS 89 A ASN 90 n 94 ASN 90 A CYS 91 n 95 CYS 91 A ASN 92 n 96 ASN 92 A LYS 93 n 97 LYS 93 A ILE 94 n 98 ILE 94 A GLN 95 n 99 GLN 95 A PHE 96 n 100 PHE 96 A ILE 97 n 101 ILE 97 A LYS 98 n 102 LYS 98 A GLU 99 n 103 GLU 99 A LYS 100 n 104 LYS 100 A GLY 101 n 105 GLY 101 A GLN 102 n 106 GLN 102 A GLU 103 n 107 GLU 103 A LEU 104 n 108 LEU 104 A LEU 105 n 109 LEU 105 A GLN 106 n 110 GLN 106 A ARG 107 n 111 ARG 107 A GLY 108 n 112 GLY 108 A LEU 109 n 113 LEU 109 A GLU 110 n 114 GLU 110 A ASN 111 n 115 ASN 111 A ASP 112 n 116 ASP 112 A LEU 113 n 117 LEU 113 A ASN 114 n 118 ASN 114 A GLU 115 n 119 GLU 115 A ILE 116 n 120 ILE 116 A ILE 117 n 121 ILE 117 A SER 118 n 122 SER 118 A PHE 119 n 123 PHE 119 A TYR 120 n 124 TYR 120 A MET 121 n 125 MET 121 A ILE 122 n 126 ILE 122 A SER 123 n 127 SER 123 A PHE 124 n 128 PHE 124 A ALA 125 n 129 ALA 125 A ASP 126 n 130 ASP 126 A LEU 127 n 131 LEU 127 A LYS 128 n 132 LYS 128 A LYS 129 n 133 LYS 129 A TYR 130 n 134 TYR 130 A LYS 131 n 135 LYS 131 A PHE 132 n 136 PHE 132 A TYR 133 n 137 TYR 133 A TYR 134 n 138 TYR 134 A TRP 135 n 139 TRP 135 A ILE 136 n 140 ILE 136 A CYS 137 n 141 CYS 137 A MET 138 n 142 MET 138 A PRO 139 n 143 PRO 139 A SER 140 n 144 SER 140 A PHE 141 n 145 PHE 141 A GLN 142 n 146 GLN 142 A SER 143 n 147 SER 143 A ASP 144 n 148 ASP 144 A GLY 145 n 149 GLY 145 A ALA 146 n 150 ALA 146 A THR 147 n 151 THR 147 A TYR 148 n 152 TYR 148 A GLN 149 n 153 GLN 149 A ILE 150 n 154 ILE 150 A ILE 151 n 155 ILE 151 A SER 152 n 156 SER 152 A SER 153 n 157 SER 153 A LYS 154 n 158 LYS 154 A VAL 155 n 159 VAL 155 A ILE 156 n 160 ILE 156 A ALA 157 n 161 ALA 157 A SER 158 n 162 SER 158 A ASP 159 n 163 ASP 159 A SER 160 n 164 SER 160 A ASP 161 n 165 ASP 161 A ILE 162 n 166 ILE 162 A SER 163 n 167 SER 163 A VAL 164 n 168 VAL 164 A SER 165 n 169 SER 165 A PHE 166 n 170 PHE 166 A ILE 167 n 171 ILE 167 A LYS 168 n 172 LYS 168 A GLN 169 n 173 GLN 169 A ASN 170 n 174 ASN 170 A VAL 171 n 175 VAL 171 A ILE 172 n 176 ILE 172 A ILE 173 n 177 ILE 173 A ALA 174 n 178 ALA 174 A CYS 175 n 179 CYS 175 A VAL 176 n 180 VAL 176 A ILE 177 n 181 ILE 177 A SER 178 n 182 SER 178 A GLY 179 n 183 GLY 179 A VAL 180 n 184 VAL 180 A ILE 181 n 185 ILE 181 A GLN 182 n 186 GLN 182 A LYS 183 n 187 LYS 183 A ALA 184 n 188 ALA 184 A THR 185 n 189 THR 185 A PRO 186 n 190 PRO 186 A ASP 187 n 191 ASP 187 A ASN 188 n 192 ASN 188 A LEU 189 n 193 LEU 189 A LYS 190 n 194 LYS 190 A VAL 191 n 195 VAL 191 A CYS 192 n 196 CYS 192 A GLU 193 n 197 GLU 193 A LYS 194 n 198 LYS 194 A VAL 195 n 199 VAL 195 A VAL 196 n 200 VAL 196 A PHE 197 n 201 PHE 197 A LYS 198 n 202 LYS 198 A ASP 199 n 203 ASP 199 A PHE 200 n 204 PHE 200 A SER 201 n 205 SER 201 A HIS 202 n 206 HIS 202 A LEU 203 n 207 LEU 203 A LYS 204 n 208 LYS 204 A ASP 205 n 209 ASP 205 A ILE 206 n 210 ILE 206 A PRO 207 n 211 PRO 207 A SER 208 n 212 SER 208 A ALA 209 n 213 ALA 209 A VAL 210 n 214 VAL 210 A THR 211 n 215 THR 211 A LYS 212 n 216 LYS 212 A ASN 213 n 217 ASN 213 A ILE 214 n 218 ILE 214 A LEU 215 n 219 LEU 215 A THR 216 n 220 THR 216 A VAL 217 n 221 VAL 217 A TRP 218 n 222 TRP 218 A SER 219 n 223 SER 219 A LYS 220 n 224 LYS 220 A LEU 221 n 225 LEU 221 A SER 222 n 226 SER 222 A PRO 223 n 227 PRO 223 A ARG 224 n 228 ARG 224 A GLU 225 n 229 GLU 225 A THR 226 n 230 THR 226 A TYR 227 n 231 TYR 227 A THR 228 n 232 THR 228 A ILE 229 n 233 ILE 229 A CYS 230 n 234 CYS 230 A PHE 231 n 235 PHE 231 A LEU 232 n 236 LEU 232 A ARG 233 n 237 ARG 233 A SER 234 n 238 SER 234 A ASP 235 n 239 ASP 235 A GLU 236 n 240 GLU 236 A SER 237 n 241 SER 237 A SER 238 n 242 SER 238 A PHE 239 n 243 PHE 239 A GLU 240 n 244 GLU 240 A ALA 241 n 245 ALA 241 A GLU 242 n 246 GLU 242 A ILE 243 n 247 ILE 243 A ILE 244 n 248 ILE 244 A ILE 245 n 249 ILE 245 A ASN 246 n 250 ASN 246 A ASN 247 n 251 ASN 247 A GLY 248 n 252 GLY 248 A ASN 249 n 253 ASN 249 A ASN 250 n 254 ASN 250 A PRO 251 n 255 PRO 251 A SER 252 n 256 SER 252 A LEU 253 n 257 LEU 253 A LYS 254 n 258 LYS 254 A VAL 255 n 259 VAL 255 A SER 256 n 260 SER 256 A GLY 257 n 261 GLY 257 A TRP 258 n 262 TRP 258 A GLU 259 n 263 GLU 259 A LYS 260 n 264 LYS 260 A n 265 261 A n 266 262 A n 267 263 A n 268 264 A n 269 265 A LEU 266 n 270 LEU 266 A ALA 267 n 271 ALA 267 A PRO 268 n 272 PRO 268 A LYS 269 n 273 LYS 269 A SER 270 n 274 SER 270 A ILE 271 n 275 ILE 271 A ASP 272 n 276 ASP 272 A LEU 273 n 277 LEU 273 A SER 274 n 278 SER 274 A SER 275 n 279 SER 275 A LEU 276 n 280 LEU 276 A n 281 277 A n 282 278 A n 283 279 A author_defined_assembly 1 monomeric software_defined_assembly PISA 2 dimeric 1320 -9 23580 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 6_554 -x,-x+y,-z-2/3 crystal symmetry operation 0.0000000000 0.0000000000 -30.0333333333 A N PHE 14 A N PHE 18 A O LEU 58 A O LEU 62 A N LYS 38 A N LYS 42 A O LEU 79 A O LEU 83 A N LEU 80 A N LEU 84 A O MET 121 A O MET 125 A N PHE 124 A N PHE 128 A O TYR 133 A O TYR 137 A N SER 140 A N SER 144 A O SER 256 A O SER 260 A N LYS 38 A N LYS 42 A O LEU 79 A O LEU 83 A N LEU 80 A N LEU 84 A O MET 121 A O MET 125 A N PHE 124 A N PHE 128 A O TYR 133 A O TYR 137 A N TYR 134 A N TYR 138 A O LYS 269 A O LYS 273 A N SER 152 A N SER 156 A O GLU 242 A O GLU 246 A O ILE 243 A O ILE 247 A N TYR 227 A N TYR 231 A O CYS 230 A O CYS 234 A N PHE 197 A N PHE 201 A O VAL 196 A O VAL 200 A N ALA 174 A N ALA 178 A N CYS 175 A N CYS 179 A O GLN 182 A O GLN 186 1 A CG PHE 31 A CG PHE 35 1 Y 1 A CD1 PHE 31 A CD1 PHE 35 1 Y 1 A CD2 PHE 31 A CD2 PHE 35 1 Y 1 A CE1 PHE 31 A CE1 PHE 35 1 Y 1 A CE2 PHE 31 A CE2 PHE 35 1 Y 1 A CZ PHE 31 A CZ PHE 35 1 Y 1 A CG LYS 32 A CG LYS 36 1 Y 1 A CD LYS 32 A CD LYS 36 1 Y 1 A CE LYS 32 A CE LYS 36 1 Y 1 A NZ LYS 32 A NZ LYS 36 1 Y 1 A CG LYS 168 A CG LYS 172 1 Y 1 A CD LYS 168 A CD LYS 172 1 Y 1 A CE LYS 168 A CE LYS 172 1 Y 1 A NZ LYS 168 A NZ LYS 172 1 Y 1 A CG LYS 204 A CG LYS 208 1 Y 1 A CD LYS 204 A CD LYS 208 1 Y 1 A CE LYS 204 A CE LYS 208 1 Y 1 A NZ LYS 204 A NZ LYS 208 1 Y 1 A CG LYS 260 A CG LYS 264 1 Y 1 A CD LYS 260 A CD LYS 264 1 Y 1 A CE LYS 260 A CE LYS 264 1 Y 1 A NZ LYS 260 A NZ LYS 264 1 Y 1 A GLY -3 A GLY 1 1 Y 1 A PRO -2 A PRO 2 1 Y 1 A HIS -1 A HIS 3 1 Y 1 A MET 0 A MET 4 1 Y 1 A MET 1 A MET 5 1 Y 1 A VAL 2 A VAL 6 1 Y 1 A SER 3 A SER 7 1 Y 1 A ASN 68 A ASN 72 1 Y 1 A ASP 69 A ASP 73 1 Y 1 A GLU 70 A GLU 74 1 Y 1 A ASN 261 A ASN 265 1 Y 1 A GLY 262 A GLY 266 1 Y 1 A LEU 263 A LEU 267 1 Y 1 A GLY 264 A GLY 268 1 Y 1 A LYS 265 A LYS 269 1 Y 1 A MET 277 A MET 281 1 Y 1 A ASP 278 A ASP 282 1 Y 1 A PRO 279 A PRO 283 1 Y 1 A PHE 31 -64.98 70.11 1 A ASN 47 -91.86 -65.53 1 A ASN 52 68.90 -5.97 1 A ARG 59 -110.07 -161.59 1 A SER 62 -55.13 -3.88 1 A ASN 92 -65.83 86.89 1 A ASN 111 -129.30 -79.94 1 A LYS 128 -90.83 -76.22 1 A ASP 205 56.34 11.38 1 A GLU 236 91.03 -8.06 1 A SER 274 -158.12 44.92 protein_rep.param protein.top dna-rna_rep.param dna-rna.top water_rep.param water.top ion.param ion.top carbohydrate.param carbohydrate.top 49.7 4.98 0.00 0.00 4.98 0.00 -9.97 BULK SOLVENT MODEL USED 0.268 0.008 0.224 0.228 0.224 2.60 38.92 1168 11354 10.3 98.8 RANDOM 97156.18 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 3VH1 Engh & Huber FLAT MODEL 31.4125 0.38 0.44 0.34 5.00 0.52 0.39 2.60 38.92 17 2130 0 0 2113 0.009 1.5 24.7 0.86 1.27 1.50 2.17 2.00 1.77 2.00 2.72 2.50 0.347 0.025 0.303 2.76 193 1600 1793 6 10.8 94.4 62.1 2.60 38.92 3VX6 12559 12144 0 -3 0.065 1 19.2 20.0 96.7 2.60 2.69 8.6 1251 0.300 1 19.6 67.0 data collection HKL-2000 phasing MOLREP refinement CNS 1.3 data reduction HKL-2000 data scaling HKL-2000 Crystal structure of Kluyveromyces marxianus Atg7NTD 1 N N 2 N N A ASP 16 A ASP 20 HELX_P A ILE 30 A ILE 34 1 1 15 A ARG 59 A ARG 63 HELX_P A GLN 64 A GLN 68 5 2 6 A THR 84 A THR 88 HELX_P A CYS 91 A CYS 95 1 3 8 A ASN 92 A ASN 96 HELX_P A ASN 111 A ASN 115 1 4 20 A ASP 112 A ASP 116 HELX_P A ILE 117 A ILE 121 5 5 6 A SER 160 A SER 164 HELX_P A LYS 168 A LYS 172 1 6 9 A THR 185 A THR 189 HELX_P A CYS 192 A CYS 196 1 7 8 A VAL 210 A VAL 214 HELX_P A SER 222 A SER 226 1 8 13 LIGASE E2 binding, E1, Ligase 3VX6 PDB 1 3VX6 -3 279 3VX6 -3 279 3VX6 A 1 1 283 2 5 5 6 parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A GLN 12 A GLN 16 A VAL 15 A VAL 19 A ALA 55 A ALA 59 A LEU 58 A LEU 62 A ASP 36 A ASP 40 A GLN 43 A GLN 47 A ILE 74 A ILE 78 A PHE 82 A PHE 86 A PHE 119 A PHE 123 A ASP 126 A ASP 130 A LYS 131 A LYS 135 A SER 140 A SER 144 A SER 256 A SER 260 A TRP 258 A TRP 262 A ASP 36 A ASP 40 A GLN 43 A GLN 47 A ILE 74 A ILE 78 A PHE 82 A PHE 86 A PHE 119 A PHE 123 A ASP 126 A ASP 130 A LYS 131 A LYS 135 A SER 140 A SER 144 A LYS 269 A LYS 273 A ILE 271 A ILE 275 A THR 147 A THR 151 A VAL 155 A VAL 159 A PHE 239 A PHE 243 A ASN 246 A ASN 250 A TYR 227 A TYR 231 A LEU 232 A LEU 236 A LYS 194 A LYS 198 A LYS 198 A LYS 202 A ILE 173 A ILE 177 A ILE 177 A ILE 181 A VAL 180 A VAL 184 A GLN 182 A GLN 186 152 P 31 2 1