0.011213 0.000000 0.000000 0.000000 0.010658 0.000000 0.000000 0.000000 0.018065 0.00000 0.00000 0.00000 Otani, J. Arita, K. Kato, T. Kinoshita, M. Ariyoshi, M. Shirakawa, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 89.182 93.829 55.357 C10 H16 N3 O7 P 321.224 n 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C2 H3 O2 -1 59.044 ACETATE ION non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N C N 8 N O N 9 N N N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N C N 39 N O N 40 N O N 41 N C N 42 N H N 43 N H N 44 N H N 45 N N N 46 S C N 47 N C N 48 N O N 49 N C N 50 N O N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N C N 65 N N N 66 N C N 67 N N N 68 N N N 69 N O N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N N N 86 S C N 87 N C N 88 N O N 89 N C N 90 N C N 91 N O N 92 N N N 93 N O N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N N N 103 S C N 104 N C N 105 N O N 106 N C N 107 N C N 108 N O N 109 N O N 110 N O N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 R C N 120 N C N 121 N O N 122 N C N 123 N S N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N O N 133 N P N 134 N O N 135 N O N 136 N O N 137 N C N 138 R C N 139 N O N 140 S C N 141 N O N 142 N C N 143 R C Y 144 N N Y 145 N C Y 146 N N Y 147 N C Y 148 N C N 149 N N Y 150 N N Y 151 N C Y 152 N N Y 153 N C N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N P N 170 N O N 171 N O N 172 N O N 173 N C N 174 R C N 175 N O N 176 S C N 177 N O N 178 N C N 179 R C N 180 N N N 181 N C N 182 N O N 183 N N N 184 N C N 185 N N N 186 N C N 187 N C N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N O N 203 N P N 204 N O N 205 N O N 206 N O N 207 N C N 208 R C N 209 N O N 210 S C N 211 N O N 212 N C N 213 R C Y 214 N N Y 215 N C Y 216 N N Y 217 N C N 218 N C N 219 N O N 220 N N N 221 N C N 222 N N N 223 N N Y 224 N C N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N O N 240 N P N 241 N O N 242 N O N 243 N O N 244 N C N 245 R C N 246 N O N 247 S C N 248 N O N 249 N C N 250 R C N 251 N N N 252 N C N 253 N O N 254 N N N 255 N C N 256 N O N 257 N C N 258 N C N 259 N C N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N C N 276 N O N 277 N C N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 N C N 290 N C N 291 N C N 292 N O N 293 N N N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N C N 311 N C N 312 N O N 313 N O N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 N C N 326 N C N 327 N O N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C Y 339 N C Y 340 N N Y 341 N C Y 342 N C Y 343 N N N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N O N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 S C N 363 N C N 364 N C N 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C N 385 N C N 386 N C N 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N N N 403 S C N 404 N C N 405 N O N 406 N C N 407 N C N 408 N C N 409 N C N 410 N N N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N N N 428 S C N 429 N C N 430 N O N 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N C N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C N 455 N C N 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N N N 468 S C N 469 N C N 470 N O N 471 N C N 472 N O N 473 N O N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N N N 482 S C N 483 N C N 484 N O N 485 R C N 486 N O N 487 N C N 488 N O N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N N N 499 S C N 500 N C N 501 N O N 502 N C Y 503 N C Y 504 N C Y 505 N C Y 506 N N Y 507 N C Y 508 N C Y 509 N C Y 510 N C Y 511 N C N 512 N O N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N N N 526 S C N 527 N C N 528 N O N 529 N C Y 530 N C Y 531 N C Y 532 N C Y 533 N C Y 534 N C Y 535 N C N 536 N O N 537 N O N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N N N 550 S C N 551 N C N 552 N O N 553 N C N 554 N C N 555 N C N 556 N O N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N doub N 7 N sing N 8 N sing N 9 N sing N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing Y 150 N sing Y 151 N sing Y 152 N doub N 153 N sing Y 154 N sing Y 155 N sing Y 156 N doub N 157 N sing Y 158 N doub N 159 N sing N 160 N sing Y 161 N sing Y 162 N doub N 163 N sing Y 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing Y 223 N sing Y 224 N sing Y 225 N doub N 226 N sing Y 227 N sing N 228 N sing Y 229 N doub N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N doub N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing Y 342 N sing Y 343 N doub Y 344 N doub N 345 N sing Y 346 N sing N 347 N sing Y 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N doub N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N doub N 427 N sing N 428 N sing N 429 N sing N 430 N sing Y 431 N doub Y 432 N sing Y 433 N sing N 434 N sing Y 435 N doub N 436 N sing Y 437 N doub N 438 N sing Y 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N doub N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N doub N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N doub N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N doub N 496 N sing N 497 N sing N 498 N sing N 499 N sing Y 500 N doub Y 501 N sing Y 502 N sing N 503 N sing Y 504 N doub Y 505 N sing Y 506 N sing N 507 N sing Y 508 N sing Y 509 N doub N 510 N sing Y 511 N doub N 512 N sing Y 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N doub N 524 N sing N 525 N sing N 526 N sing N 527 N sing Y 528 N doub Y 529 N sing Y 530 N sing N 531 N sing Y 532 N doub N 533 N sing Y 534 N doub N 535 N sing Y 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N doub N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 288 6351 6362 10.1074/jbc.M112.431098 23316048 Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4 2013 10.2210/pdb3vxx/pdb pdb_00003vxx 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 95 1 CCD 2009-11-25 ADSC QUANTUM 210 SINGLE WAVELENGTH M x-ray 1 1.0 1.0 AR-NW12A Photon Factory 1.0 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 7829.089 Methyl-CpG-binding domain protein 4 3.2.2.- methyl CpG binding domain, UNP residues 69-136 1 man polymer 4263.809 DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3') 1 syn polymer 4325.828 DNA (5'-D(*GP*TP*CP*(5CM)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3') 1 syn polymer 59.044 ACETATE ION 6 syn non-polymer 62.068 1,2-ETHANEDIOL 3 syn non-polymer 18.015 water 123 nat water Methyl-CpG-binding protein MBD4, Mismatch-specific DNA N-glycosylase no no SGHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFTVLPKG SGHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFTVLPKG A polypeptide(L) no yes (DG)(DT)(DC)(DA)(DC)(DT)(DA)(DC)(5CM)(DG)(DG)(DA)(DC)(DA) GTCACTACCGGACA B polydeoxyribonucleotide no yes (DG)(DT)(DC)(5CM)(DG)(DG)(DT)(DA)(DG)(DT)(DG)(DA)(DC)(DT) GTCCGGTAGTGACT C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample Mbd4 10090 Mus musculus 562 Escherichia coli BL21(DE3) plasmid 1 3.53 65.12 VAPOR DIFFUSION, HANGING DROP 4.4 7% PEG 10000, 0.1M sodium acetate, 0.2M sodium chloride, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 -24.289 1 19 B 1 C 13 0.991 B_DG1:DC13_C 1 -16.683 -0.204 -0.021 -0.026 -11.881 1 20 B 2 C 12 -3.086 B_DT2:DA12_C 2 -9.124 -0.215 0.085 0.001 -2.031 1 19 B 3 C 11 1.764 B_DC3:DG11_C 3 -7.799 0.105 -0.223 -0.026 2.582 1 20 B 4 C 10 2.068 B_DA4:DT10_C 4 -10.531 0.169 0.075 -0.049 7.609 1 19 B 5 C 9 2.624 B_DC5:DG9_C 5 -16.011 0.554 -0.115 -0.167 -3.137 1 20 B 6 C 8 -0.206 B_DT6:DA8_C 6 -11.306 -0.085 0.022 -0.166 -9.830 1 20 B 7 C 7 1.235 B_DA7:DT7_C 7 -10.211 -0.121 -0.078 -0.107 -3.913 1 19 B 8 C 6 -2.251 B_DC8:DG6_C 8 -7.029 0.402 0.367 -0.124 4.408 1 19 B 9 C 5 -0.814 B_5CM9:DG5_C 9 -7.874 0.524 -0.166 -0.173 3.276 1 19 B 10 C 4 -5.182 B_DG10:5CM4_C 10 6.643 -0.469 0.034 -0.195 19.190 1 19 B 11 C 3 2.071 B_DG11:DC3_C 11 -3.020 -0.334 0.179 0.014 19.492 1 20 B 12 C 2 3.697 B_DA12:DT2_C 12 -21.036 -0.042 0.144 -0.147 13.527 1 19 B 13 C 1 0.915 B_DC13:DG1_C 13 -14.973 0.351 -0.099 -0.031 2.841 31.937 B B 1 2 8.796 C C 13 12 2.965 4.822 -0.911 -0.730 BB_DG1DT2:DA12DC13_CC 1 -0.598 1.091 31.574 -2.107 1.558 3.060 38.087 B B 2 3 2.463 C C 12 11 3.007 1.604 0.705 0.039 BB_DT2DC3:DG11DA12_CC 2 3.735 -5.733 37.878 -0.129 -0.640 3.031 30.781 B B 3 4 23.683 C C 11 10 3.255 12.235 0.055 0.098 BB_DC3DA4:DT10DG11_CC 3 -1.324 2.564 28.268 -2.217 -0.363 3.139 33.599 B B 4 5 2.367 C C 10 9 3.131 1.367 0.696 -0.694 BB_DA4DC5:DG9DT10_CC 4 2.241 -3.880 33.499 -1.415 -0.851 3.227 32.580 B B 5 6 14.919 C C 9 8 3.508 8.270 -0.040 -0.616 BB_DC5DT6:DA8DG9_CC 5 3.129 -5.644 31.389 -2.611 0.643 3.370 34.005 B B 6 7 12.672 C C 8 7 3.503 7.352 0.196 -0.288 BB_DT6DA7:DT7DA8_CC 6 1.923 -3.315 33.169 -1.741 -0.009 3.241 33.451 B B 7 8 3.967 C C 7 6 3.251 2.280 -0.563 -0.499 BB_DA7DC8:DG6DT7_CC 7 -2.278 3.964 33.299 -1.241 0.603 3.265 31.331 B B 8 9 -0.091 C C 6 5 3.161 -0.049 0.923 0.001 BB_DC85CM9:DG5DG6_CC 8 4.938 -9.181 30.949 0.010 -0.788 3.578 36.545 B B 9 10 -7.467 C C 5 4 3.583 -4.665 -0.138 -0.190 BB_5CM9DG10:5CM4DG5_CC 9 -3.169 5.073 36.122 0.406 -0.262 3.090 30.987 B B 10 11 6.785 C C 4 3 3.179 3.605 0.045 -0.269 BB_DG10DG11:DC35CM4_CC 10 -4.461 8.397 30.464 -1.175 -0.916 3.246 33.850 B B 11 12 6.696 C C 3 2 3.298 3.879 -0.596 -0.735 BB_DG11DA12:DT2DC3_CC 11 -4.679 8.077 33.316 -1.893 0.263 3.240 34.117 B B 12 13 9.776 C C 2 1 3.509 5.708 0.279 -1.263 BB_DA12DC13:DG1DT2_CC 12 -1.647 2.821 33.611 -3.094 -0.747 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2013-01-16 1 1 2013-08-14 1 2 2023-11-08 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBJ Y PDBJ 2012-09-21 REL REL ACT ACETATE ION EDO 1,2-ETHANEDIOL HOH water chemical synthesis sample chemical synthesis sample 3VXV PDB ENTRY 3VXV PDB experimental model ACT 1 4 ACT ACT 201 A ACT 2 4 ACT ACT 202 A ACT 5 4 ACT ACT 203 A ACT 6 4 ACT ACT 204 A EDO 10 5 EDO EDO 205 A EDO 12 5 EDO EDO 206 A EDO 13 5 EDO EDO 207 A ACT 4 4 ACT ACT 101 B ACT 3 4 ACT ACT 101 C HOH 2 6 HOH HOH 301 A HOH 3 6 HOH HOH 302 A HOH 7 6 HOH HOH 303 A HOH 11 6 HOH HOH 304 A HOH 12 6 HOH HOH 305 A HOH 14 6 HOH HOH 306 A HOH 16 6 HOH HOH 307 A HOH 19 6 HOH HOH 308 A HOH 24 6 HOH HOH 309 A HOH 26 6 HOH HOH 310 A HOH 27 6 HOH HOH 311 A HOH 28 6 HOH HOH 312 A HOH 34 6 HOH HOH 313 A HOH 36 6 HOH HOH 314 A HOH 39 6 HOH HOH 315 A HOH 40 6 HOH HOH 316 A HOH 42 6 HOH HOH 317 A HOH 44 6 HOH HOH 318 A HOH 46 6 HOH HOH 319 A HOH 47 6 HOH HOH 320 A HOH 49 6 HOH HOH 321 A HOH 52 6 HOH HOH 322 A HOH 53 6 HOH HOH 323 A HOH 54 6 HOH HOH 324 A HOH 58 6 HOH HOH 325 A HOH 63 6 HOH HOH 326 A HOH 64 6 HOH HOH 327 A HOH 65 6 HOH HOH 328 A HOH 68 6 HOH HOH 329 A HOH 70 6 HOH HOH 330 A HOH 72 6 HOH HOH 331 A HOH 75 6 HOH HOH 332 A HOH 80 6 HOH HOH 333 A HOH 83 6 HOH HOH 334 A HOH 84 6 HOH HOH 335 A HOH 87 6 HOH HOH 336 A HOH 94 6 HOH HOH 337 A HOH 96 6 HOH HOH 338 A HOH 99 6 HOH HOH 339 A HOH 100 6 HOH HOH 340 A HOH 101 6 HOH HOH 341 A HOH 104 6 HOH HOH 342 A HOH 105 6 HOH HOH 343 A HOH 106 6 HOH HOH 344 A HOH 108 6 HOH HOH 345 A HOH 109 6 HOH HOH 346 A HOH 110 6 HOH HOH 347 A HOH 116 6 HOH HOH 348 A HOH 119 6 HOH HOH 349 A HOH 123 6 HOH HOH 350 A HOH 32 6 HOH HOH 351 A HOH 15 6 HOH HOH 352 A HOH 8 6 HOH HOH 201 B HOH 9 6 HOH HOH 202 B HOH 10 6 HOH HOH 203 B HOH 17 6 HOH HOH 204 B HOH 18 6 HOH HOH 205 B HOH 20 6 HOH HOH 206 B HOH 22 6 HOH HOH 207 B HOH 30 6 HOH HOH 208 B HOH 38 6 HOH HOH 209 B HOH 41 6 HOH HOH 210 B HOH 45 6 HOH HOH 211 B HOH 48 6 HOH HOH 212 B HOH 51 6 HOH HOH 213 B HOH 55 6 HOH HOH 214 B HOH 61 6 HOH HOH 215 B HOH 62 6 HOH HOH 216 B HOH 66 6 HOH HOH 217 B HOH 69 6 HOH HOH 218 B HOH 76 6 HOH HOH 219 B HOH 79 6 HOH HOH 220 B HOH 88 6 HOH HOH 221 B HOH 89 6 HOH HOH 222 B HOH 90 6 HOH HOH 223 B HOH 93 6 HOH HOH 224 B HOH 97 6 HOH HOH 225 B HOH 102 6 HOH HOH 226 B HOH 111 6 HOH HOH 227 B HOH 112 6 HOH HOH 228 B HOH 114 6 HOH HOH 229 B HOH 115 6 HOH HOH 230 B HOH 117 6 HOH HOH 231 B HOH 122 6 HOH HOH 232 B HOH 92 6 HOH HOH 201 C HOH 1 6 HOH HOH 202 C HOH 4 6 HOH HOH 203 C HOH 5 6 HOH HOH 204 C HOH 6 6 HOH HOH 205 C HOH 13 6 HOH HOH 206 C HOH 21 6 HOH HOH 207 C HOH 23 6 HOH HOH 208 C HOH 25 6 HOH HOH 209 C HOH 29 6 HOH HOH 210 C HOH 31 6 HOH HOH 211 C HOH 33 6 HOH HOH 212 C HOH 35 6 HOH HOH 213 C HOH 37 6 HOH HOH 214 C HOH 43 6 HOH HOH 215 C HOH 50 6 HOH HOH 216 C HOH 56 6 HOH HOH 217 C HOH 57 6 HOH HOH 218 C HOH 59 6 HOH HOH 219 C HOH 60 6 HOH HOH 220 C HOH 67 6 HOH HOH 221 C HOH 71 6 HOH HOH 222 C HOH 73 6 HOH HOH 223 C HOH 74 6 HOH HOH 224 C HOH 77 6 HOH HOH 225 C HOH 78 6 HOH HOH 226 C HOH 81 6 HOH HOH 227 C HOH 82 6 HOH HOH 228 C HOH 85 6 HOH HOH 229 C HOH 86 6 HOH HOH 230 C HOH 91 6 HOH HOH 231 C HOH 95 6 HOH HOH 232 C HOH 98 6 HOH HOH 233 C HOH 103 6 HOH HOH 234 C HOH 107 6 HOH HOH 235 C HOH 113 6 HOH HOH 236 C HOH 118 6 HOH HOH 237 C HOH 120 6 HOH HOH 238 C HOH 121 6 HOH HOH 239 C n 1 68 A n 2 69 A n 3 70 A n 4 71 A PRO 72 n 5 PRO 72 A VAL 73 n 6 VAL 73 A PRO 74 n 7 PRO 74 A CYS 75 n 8 CYS 75 A GLY 76 n 9 GLY 76 A TRP 77 n 10 TRP 77 A GLU 78 n 11 GLU 78 A ARG 79 n 12 ARG 79 A VAL 80 n 13 VAL 80 A VAL 81 n 14 VAL 81 A LYS 82 n 15 LYS 82 A GLN 83 n 16 GLN 83 A ARG 84 n 17 ARG 84 A LEU 85 n 18 LEU 85 A SER 86 n 19 SER 86 A GLY 87 n 20 GLY 87 A LYS 88 n 21 LYS 88 A THR 89 n 22 THR 89 A ALA 90 n 23 ALA 90 A GLY 91 n 24 GLY 91 A LYS 92 n 25 LYS 92 A PHE 93 n 26 PHE 93 A ASP 94 n 27 ASP 94 A VAL 95 n 28 VAL 95 A TYR 96 n 29 TYR 96 A PHE 97 n 30 PHE 97 A ILE 98 n 31 ILE 98 A SER 99 n 32 SER 99 A PRO 100 n 33 PRO 100 A GLN 101 n 34 GLN 101 A GLY 102 n 35 GLY 102 A LEU 103 n 36 LEU 103 A LYS 104 n 37 LYS 104 A PHE 105 n 38 PHE 105 A ARG 106 n 39 ARG 106 A SER 107 n 40 SER 107 A LYS 108 n 41 LYS 108 A ARG 109 n 42 ARG 109 A SER 110 n 43 SER 110 A LEU 111 n 44 LEU 111 A ALA 112 n 45 ALA 112 A ASN 113 n 46 ASN 113 A TYR 114 n 47 TYR 114 A LEU 115 n 48 LEU 115 A LEU 116 n 49 LEU 116 A LYS 117 n 50 LYS 117 A ASN 118 n 51 ASN 118 A GLY 119 n 52 GLY 119 A GLU 120 n 53 GLU 120 A THR 121 n 54 THR 121 A PHE 122 n 55 PHE 122 A LEU 123 n 56 LEU 123 A LYS 124 n 57 LYS 124 A PRO 125 n 58 PRO 125 A GLU 126 n 59 GLU 126 A ASP 127 n 60 ASP 127 A PHE 128 n 61 PHE 128 A ASN 129 n 62 ASN 129 A PHE 130 n 63 PHE 130 A THR 131 n 64 THR 131 A VAL 132 n 65 VAL 132 A LEU 133 n 66 LEU 133 A PRO 134 n 67 PRO 134 A n 68 135 A n 69 136 A DG 1 n 1 DG 1 B DT 2 n 2 DT 2 B DC 3 n 3 DC 3 B DA 4 n 4 DA 4 B DC 5 n 5 DC 5 B DT 6 n 6 DT 6 B DA 7 n 7 DA 7 B DC 8 n 8 DC 8 B 5CM 9 n 9 5CM 9 B DG 10 n 10 DG 10 B DG 11 n 11 DG 11 B DA 12 n 12 DA 12 B DC 13 n 13 DC 13 B DA 14 n 14 DA 14 B DG 1 n 1 DG 1 C DT 2 n 2 DT 2 C DC 3 n 3 DC 3 C 5CM 4 n 4 5CM 4 C DG 5 n 5 DG 5 C DG 6 n 6 DG 6 C DT 7 n 7 DT 7 C DA 8 n 8 DA 8 C DG 9 n 9 DG 9 C DT 10 n 10 DT 10 C DG 11 n 11 DG 11 C DA 12 n 12 DA 12 C DC 13 n 13 DC 13 C DT 14 n 14 DT 14 C 0.1975 -0.2888 0.2369 0.6312 -0.0399 0.7690 0.0093 0.1466 0.0347 -0.1660 0.0460 -0.0066 -0.0516 0.0524 -0.0326 0.2086 -0.0364 -0.0034 0.2184 0.0066 0.1876 refined 3.4960 12.0971 4.4118 X-RAY DIFFRACTION 2.3468 1.4976 0.1516 1.1846 0.3444 0.2642 -0.1097 -0.3115 -0.3255 -0.2639 -0.0099 -0.2258 -0.1719 -0.1087 0.0512 0.2592 -0.0793 -0.0121 0.2831 0.1062 0.3023 refined 18.9353 11.7890 -13.9496 X-RAY DIFFRACTION 1.2729 -0.3261 0.4259 0.5810 -0.5276 0.4689 -0.2826 -0.0808 0.1478 -0.2369 0.1178 -0.1358 0.0670 -0.0054 0.1290 0.2233 -0.0566 0.0195 0.3830 -0.0170 0.2568 refined 22.7568 13.1583 -11.3946 X-RAY DIFFRACTION A 72 A 134 X-RAY DIFFRACTION 1 (chain 'A' and (resseq 72:134)) B 1 B 14 X-RAY DIFFRACTION 2 (chain 'B' and (resseq 1:14)) C 1 C 14 X-RAY DIFFRACTION 3 (chain 'C' and (resseq 1:14)) author_and_software_defined_assembly PISA 3 trimeric 5080 -4 10280 B 5CM 9 B 5CM 9 DC C 5CM 4 C 5CM 4 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 80 A N VAL 13 A O TYR 96 A O TYR 29 A N PHE 97 A N PHE 30 A O PHE 105 A O PHE 38 1 B HOH 207 N HOH 1 A SER 68 A SER 1 1 Y 1 A GLY 69 A GLY 2 1 Y 1 A HIS 70 A HIS 3 1 Y 1 A LYS 71 A LYS 4 1 Y 1 A LYS 135 A LYS 68 1 Y 1 A GLY 136 A GLY 69 1 Y 1 C C O2 O DT HOH 7 234 2.17 1 2.26 0.30 108.30 110.56 B B B O4' C1' N9 DA DA DA 4 4 4 N 1 2.36 0.30 108.30 110.66 B B B O4' C1' N1 DC DC DC 5 5 5 N 1 -3.14 0.40 104.50 101.36 C C C O4' C4' C3' DC DC DC 3 3 3 N 1 2.68 0.30 108.30 110.98 C C C O4' C1' N9 DG DG DG 11 11 11 N 1 2.34 0.30 108.30 110.64 C C C O4' C1' N9 DA DA DA 12 12 12 N 78.830 20.150 -13.1184 0.0000 0.0000 11.4286 -0.0000 1.6898 0.2145 0.1955 0.1965 2.204 28.339 574 12027 4.77 99.54 1.000 0.460 0.34 1 1.34 MOLECULAR REPLACEMENT 25.1500 0.60 0.90 PDB ENTRY 3VXV ML FLAT BULK SOLVENT MODEL 42.734 0.347 2.204 28.339 123 1240 36 570 511 0.006 1201 1.193 1727 23.213 471 0.062 183 0.006 126 0.3409 0.2721 2.4257 142 2830 2972 4 100.0000 0.3333 0.2601 2.7764 141 2828 2969 4 100.0000 0.2073 0.1913 3.4970 133 2858 2991 4 100.0000 0.1738 0.1684 28.3414 158 2937 3095 4 99.0000 41.310 2.2 50 3VXX 12096 12048 1.0 1.0 0.078 1 12.4 7.2 99.6 0.477 2.2 2.28 4.5 1 7.3 99.9 data collection HKL-2000 phasing MOLREP refinement PHENIX (phenix.refine: 1.6.4_486) data reduction HKL-2000 data scaling HKL-2000 Crystal structure of methyl CpG binding domain of MBD4 in complex with the 5mCG/5mCG sequence 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 5 N N 5 N N 5 N N 4 N N 4 N N 6 N N 6 N N 6 N N A SER 107 A SER 40 HELX_P A GLY 119 A GLY 52 1 1 13 A LYS 124 A LYS 57 HELX_P A PHE 128 A PHE 61 5 2 5 disulf 2.056 A CYS 75 A SG CYS 8 1_555 A CYS 75 A SG CYS 8 3_555 covale 1.600 both B DC 8 B O3' DC 8 1_555 B 5CM 9 B P 5CM 9 1_555 covale 1.606 both B 5CM 9 B O3' 5CM 9 1_555 B DG 10 B P DG 10 1_555 covale 1.607 both C DC 3 C O3' DC 3 1_555 C 5CM 4 C P 5CM 4 1_555 covale 1.618 both C 5CM 4 C O3' 5CM 4 1_555 C DG 5 C P DG 5 1_555 hydrog WATSON-CRICK B DG 1 B N1 DG 1 1_555 C DC 13 C N3 DC 13 1_555 hydrog WATSON-CRICK B DG 1 B N2 DG 1 1_555 C DC 13 C O2 DC 13 1_555 hydrog WATSON-CRICK B DG 1 B O6 DG 1 1_555 C DC 13 C N4 DC 13 1_555 hydrog WATSON-CRICK B DT 2 B N3 DT 2 1_555 C DA 12 C N1 DA 12 1_555 hydrog WATSON-CRICK B DT 2 B O4 DT 2 1_555 C DA 12 C N6 DA 12 1_555 hydrog WATSON-CRICK B DC 3 B N3 DC 3 1_555 C DG 11 C N1 DG 11 1_555 hydrog WATSON-CRICK B DC 3 B N4 DC 3 1_555 C DG 11 C O6 DG 11 1_555 hydrog WATSON-CRICK B DC 3 B O2 DC 3 1_555 C DG 11 C N2 DG 11 1_555 hydrog WATSON-CRICK B DA 4 B N1 DA 4 1_555 C DT 10 C N3 DT 10 1_555 hydrog WATSON-CRICK B DA 4 B N6 DA 4 1_555 C DT 10 C O4 DT 10 1_555 hydrog WATSON-CRICK B DC 5 B N3 DC 5 1_555 C DG 9 C N1 DG 9 1_555 hydrog WATSON-CRICK B DC 5 B N4 DC 5 1_555 C DG 9 C O6 DG 9 1_555 hydrog WATSON-CRICK B DC 5 B O2 DC 5 1_555 C DG 9 C N2 DG 9 1_555 hydrog WATSON-CRICK B DT 6 B N3 DT 6 1_555 C DA 8 C N1 DA 8 1_555 hydrog WATSON-CRICK B DT 6 B O4 DT 6 1_555 C DA 8 C N6 DA 8 1_555 hydrog WATSON-CRICK B DA 7 B N1 DA 7 1_555 C DT 7 C N3 DT 7 1_555 hydrog WATSON-CRICK B DA 7 B N6 DA 7 1_555 C DT 7 C O4 DT 7 1_555 hydrog WATSON-CRICK B DC 8 B N3 DC 8 1_555 C DG 6 C N1 DG 6 1_555 hydrog WATSON-CRICK B DC 8 B N4 DC 8 1_555 C DG 6 C O6 DG 6 1_555 hydrog WATSON-CRICK B DC 8 B O2 DC 8 1_555 C DG 6 C N2 DG 6 1_555 hydrog WATSON-CRICK B 5CM 9 B N3 5CM 9 1_555 C DG 5 C N1 DG 5 1_555 hydrog WATSON-CRICK B 5CM 9 B N4 5CM 9 1_555 C DG 5 C O6 DG 5 1_555 hydrog WATSON-CRICK B 5CM 9 B O2 5CM 9 1_555 C DG 5 C N2 DG 5 1_555 hydrog WATSON-CRICK B DG 10 B N1 DG 10 1_555 C 5CM 4 C N3 5CM 4 1_555 hydrog WATSON-CRICK B DG 10 B N2 DG 10 1_555 C 5CM 4 C O2 5CM 4 1_555 hydrog WATSON-CRICK B DG 10 B O6 DG 10 1_555 C 5CM 4 C N4 5CM 4 1_555 hydrog WATSON-CRICK B DG 11 B N1 DG 11 1_555 C DC 3 C N3 DC 3 1_555 hydrog WATSON-CRICK B DG 11 B N2 DG 11 1_555 C DC 3 C O2 DC 3 1_555 hydrog WATSON-CRICK B DG 11 B O6 DG 11 1_555 C DC 3 C N4 DC 3 1_555 hydrog WATSON-CRICK B DA 12 B N1 DA 12 1_555 C DT 2 C N3 DT 2 1_555 hydrog WATSON-CRICK B DA 12 B N6 DA 12 1_555 C DT 2 C O4 DT 2 1_555 hydrog WATSON-CRICK B DC 13 B N3 DC 13 1_555 C DG 1 C N1 DG 1 1_555 hydrog WATSON-CRICK B DC 13 B N4 DC 13 1_555 C DG 1 C O6 DG 1 1_555 hydrog WATSON-CRICK B DC 13 B O2 DC 13 1_555 C DG 1 C N2 DG 1 1_555 HYDROLASE/DNA methyl CpG binding domain, protein-DNA complex, versatile base recognition, HYDROLASE-DNA complex MBD4_MOUSE UNP 1 69 Q9Z2D7 GHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFTVLPKG 3VXX PDB 2 3VXX 3VXX PDB 3 3VXX 69 136 3VXX 69 136 Q9Z2D7 A 1 2 69 1 14 3VXX 1 14 3VXX B 2 1 14 1 14 3VXX 1 14 3VXX C 3 1 14 1 expression tag SER 68 3VXX A Q9Z2D7 UNP 1 3 anti-parallel anti-parallel A GLU 78 A GLU 11 A GLN 83 A GLN 16 A PHE 93 A PHE 26 A ILE 98 A ILE 31 A LYS 104 A LYS 37 A PHE 105 A PHE 38 BINDING SITE FOR RESIDUE ACT A 201 A ACT 201 Software 7 BINDING SITE FOR RESIDUE ACT A 202 A ACT 202 Software 6 BINDING SITE FOR RESIDUE ACT A 203 A ACT 203 Software 4 BINDING SITE FOR RESIDUE ACT A 204 A ACT 204 Software 3 BINDING SITE FOR RESIDUE EDO A 205 A EDO 205 Software 6 BINDING SITE FOR RESIDUE EDO A 206 A EDO 206 Software 5 BINDING SITE FOR RESIDUE EDO A 207 A EDO 207 Software 2 BINDING SITE FOR RESIDUE ACT B 101 B ACT 101 Software 5 BINDING SITE FOR RESIDUE ACT C 101 C ACT 101 Software 3 A GLU 120 A GLU 53 7 1_555 A GLU 120 A GLU 53 7 3_555 A PHE 122 A PHE 55 7 1_555 B DG 1 B DG 1 7 8_455 B ACT 101 K ACT 7 8_455 C DT 14 C DT 14 7 6_555 C DT 14 C DT 14 7 8_455 A LYS 92 A LYS 25 6 1_555 A PHE 93 A PHE 26 6 1_555 A ASP 94 A ASP 27 6 1_555 A HOH 331 M HOH 6 1_555 B DC 8 B DC 8 6 1_555 B HOH 211 N HOH 6 1_555 A VAL 73 A VAL 6 4 1_555 A PRO 74 A PRO 7 4 1_555 A GLY 76 A GLY 9 4 1_555 A TRP 77 A TRP 10 4 1_555 A GLN 101 A GLN 34 3 1_555 A ASN 118 A ASN 51 3 1_555 A GLU 120 A GLU 53 3 1_555 A GLN 83 A GLN 16 6 1_555 A ARG 84 A ARG 17 6 1_555 A LEU 85 A LEU 18 6 1_555 A HOH 319 M HOH 6 1_555 C DC 3 C DC 3 6 1_555 C 5CM 4 C 5CM 4 6 1_555 A PHE 93 A PHE 26 5 1_555 A PHE 130 A PHE 63 5 3_555 A THR 131 A THR 64 5 3_555 A VAL 132 A VAL 65 5 3_555 B DA 7 B DA 7 5 1_555 A LEU 133 A LEU 66 2 1_555 A PRO 134 A PRO 67 2 1_555 A ACT 201 D ACT 5 8_555 B DT 2 B DT 2 5 1_555 B DC 3 B DC 3 5 1_555 C DC 13 C DC 13 5 1_555 C DT 14 C DT 14 5 3_654 B DC 13 B DC 13 3 1_555 C DT 2 C DT 2 3 1_555 C DC 3 C DC 3 3 1_555 20 C 2 2 21