0.006934 0.004004 0.000000 -0.000000 0.008007 0.000000 0.000000 -0.000000 0.009398 0.00000 0.00000 0.00000 Kattner, C. Zaucha, J. Jaenecke, F. Zachariae, U. Tanabe, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 144.208 144.208 106.411 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cs 1 132.905 CESIUM ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CS N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N C N 81 N C N 82 N O N 83 N N N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N N N 115 N C N 116 N C N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N N N 125 S C N 126 N C N 127 N O N 128 N C Y 129 N C Y 130 N N Y 131 N C Y 132 N C Y 133 N N N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 S C N 153 N C N 154 N C N 155 N C N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N C N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N C N 199 N C N 200 N N N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N S N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N C N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 R C N 296 N O N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N N Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N C N 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing US Proteins PSFGEY 0867 0887-3585 81 830 840 10.1002/prot.24241 23255122 Identification of a cation transport pathway in Neisseria meningitidis PorB. 2013 10.2210/pdb3vy9/pdb pdb_00003vy9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-07-12 MARMOSAIC 225 mm CCD SINGLE WAVELENGTH M x-ray 1 0.918 1.0 14.1 BESSY 0.918 SYNCHROTRON BESSY BEAMLINE 14.1 38179.305 Outer membrane protein 1 man polymer 132.905 CESIUM ION 4 syn non-polymer 18.015 water 12 nat water no no MASMTGGQQMGRDLQVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKAS IAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSG SVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGY DANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDF SKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF MASMTGGQQMGRDLQVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKAS IAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSG SVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGY DANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDF SKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF X polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n W135 sample 487 Neisseria meningitidis 562 Escherichia coli BL21(DE3) plasmid pET21b 1 2.79 55.89 VAPOR DIFFUSION, HANGING DROP 6.0 30% Jeffamine M600, 50mM CsCl, 0.1M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2013-01-02 1 1 2013-10-09 1 2 2023-11-08 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id same protein complexed with cesium in different space group PDBJ Y PDBJ 2012-09-21 REL REL CS CESIUM ION HOH water A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. 3A2R PDB experimental model CS 1 2 CS CS 401 X CS 2 2 CS CS 402 X CS 3 2 CS CS 403 X CS 4 2 CS CS 404 X HOH 3 3 HOH HOH 501 X HOH 4 3 HOH HOH 502 X HOH 6 3 HOH HOH 503 X HOH 7 3 HOH HOH 504 X HOH 8 3 HOH HOH 505 X HOH 9 3 HOH HOH 506 X HOH 10 3 HOH HOH 507 X HOH 12 3 HOH HOH 508 X HOH 14 3 HOH HOH 509 X HOH 15 3 HOH HOH 510 X HOH 21 3 HOH HOH 511 X HOH 29 3 HOH HOH 512 X n 1 -13 X n 2 -12 X n 3 -11 X n 4 -10 X n 5 -9 X n 6 -8 X n 7 -7 X n 8 -6 X n 9 -5 X n 10 -4 X n 11 -3 X n 12 -2 X n 13 -1 X n 14 0 X GLN 1 n 15 GLN 1 X VAL 2 n 16 VAL 2 X THR 3 n 17 THR 3 X LEU 4 n 18 LEU 4 X TYR 5 n 19 TYR 5 X GLY 6 n 20 GLY 6 X THR 7 n 21 THR 7 X ILE 8 n 22 ILE 8 X LYS 9 n 23 LYS 9 X ALA 10 n 24 ALA 10 X GLY 11 n 25 GLY 11 X VAL 12 n 26 VAL 12 X GLU 13 n 27 GLU 13 X VAL 14 n 28 VAL 14 X SER 15 n 29 SER 15 X ARG 16 n 30 ARG 16 X VAL 17 n 31 VAL 17 X LYS 18 n 32 LYS 18 X ASP 19 n 33 ASP 19 X ALA 20 n 34 ALA 20 X GLY 21 n 35 GLY 21 X THR 22 n 36 THR 22 X TYR 23 n 37 TYR 23 X LYS 24 n 38 LYS 24 X ALA 25 n 39 ALA 25 X GLN 26 n 40 GLN 26 X GLY 27 n 41 GLY 27 X GLY 28 n 42 GLY 28 X LYS 29 n 43 LYS 29 X SER 30 n 44 SER 30 X LYS 31 n 45 LYS 31 X THR 32 n 46 THR 32 X ALA 33 n 47 ALA 33 X THR 34 n 48 THR 34 X GLN 35 n 49 GLN 35 X ILE 36 n 50 ILE 36 X ALA 37 n 51 ALA 37 X ASP 38 n 52 ASP 38 X PHE 39 n 53 PHE 39 X GLY 40 n 54 GLY 40 X SER 41 n 55 SER 41 X LYS 42 n 56 LYS 42 X ILE 43 n 57 ILE 43 X GLY 44 n 58 GLY 44 X PHE 45 n 59 PHE 45 X LYS 46 n 60 LYS 46 X GLY 47 n 61 GLY 47 X GLN 48 n 62 GLN 48 X GLU 49 n 63 GLU 49 X ASP 50 n 64 ASP 50 X LEU 51 n 65 LEU 51 X GLY 52 n 66 GLY 52 X ASN 53 n 67 ASN 53 X GLY 54 n 68 GLY 54 X MET 55 n 69 MET 55 X LYS 56 n 70 LYS 56 X ALA 57 n 71 ALA 57 X ILE 58 n 72 ILE 58 X TRP 59 n 73 TRP 59 X GLN 60 n 74 GLN 60 X LEU 61 n 75 LEU 61 X GLU 62 n 76 GLU 62 X GLN 63 n 77 GLN 63 X LYS 64 n 78 LYS 64 X ALA 65 n 79 ALA 65 X SER 66 n 80 SER 66 X ILE 67 n 81 ILE 67 X ALA 68 n 82 ALA 68 X GLY 69 n 83 GLY 69 X THR 70 n 84 THR 70 X ASN 71 n 85 ASN 71 X SER 72 n 86 SER 72 X GLY 73 n 87 GLY 73 X TRP 74 n 88 TRP 74 X GLY 75 n 89 GLY 75 X ASN 76 n 90 ASN 76 X ARG 77 n 91 ARG 77 X GLN 78 n 92 GLN 78 X SER 79 n 93 SER 79 X PHE 80 n 94 PHE 80 X ILE 81 n 95 ILE 81 X GLY 82 n 96 GLY 82 X LEU 83 n 97 LEU 83 X LYS 84 n 98 LYS 84 X GLY 85 n 99 GLY 85 X GLY 86 n 100 GLY 86 X PHE 87 n 101 PHE 87 X GLY 88 n 102 GLY 88 X THR 89 n 103 THR 89 X VAL 90 n 104 VAL 90 X ARG 91 n 105 ARG 91 X ALA 92 n 106 ALA 92 X GLY 93 n 107 GLY 93 X ASN 94 n 108 ASN 94 X LEU 95 n 109 LEU 95 X ASN 96 n 110 ASN 96 X THR 97 n 111 THR 97 X VAL 98 n 112 VAL 98 X LEU 99 n 113 LEU 99 X LYS 100 n 114 LYS 100 X ASP 101 n 115 ASP 101 X SER 102 n 116 SER 102 X GLY 103 n 117 GLY 103 X ASP 104 n 118 ASP 104 X ASN 105 n 119 ASN 105 X VAL 106 n 120 VAL 106 X ASN 107 n 121 ASN 107 X ALA 108 n 122 ALA 108 X TRP 109 n 123 TRP 109 X GLU 110 n 124 GLU 110 X SER 111 n 125 SER 111 X GLY 112 n 126 GLY 112 X SER 113 n 127 SER 113 X ASN 114 n 128 ASN 114 X THR 115 n 129 THR 115 X GLU 116 n 130 GLU 116 X ASP 117 n 131 ASP 117 X VAL 118 n 132 VAL 118 X LEU 119 n 133 LEU 119 X GLY 120 n 134 GLY 120 X LEU 121 n 135 LEU 121 X GLY 122 n 136 GLY 122 X THR 123 n 137 THR 123 X ILE 124 n 138 ILE 124 X GLY 125 n 139 GLY 125 X ARG 126 n 140 ARG 126 X VAL 127 n 141 VAL 127 X GLU 128 n 142 GLU 128 X SER 129 n 143 SER 129 X ARG 130 n 144 ARG 130 X GLU 131 n 145 GLU 131 X ILE 132 n 146 ILE 132 X SER 133 n 147 SER 133 X VAL 134 n 148 VAL 134 X ARG 135 n 149 ARG 135 X TYR 136 n 150 TYR 136 X ASP 137 n 151 ASP 137 X SER 138 n 152 SER 138 X PRO 139 n 153 PRO 139 X VAL 140 n 154 VAL 140 X PHE 141 n 155 PHE 141 X ALA 142 n 156 ALA 142 X GLY 143 n 157 GLY 143 X PHE 144 n 158 PHE 144 X SER 145 n 159 SER 145 X GLY 146 n 160 GLY 146 X SER 147 n 161 SER 147 X VAL 148 n 162 VAL 148 X GLN 149 n 163 GLN 149 X TYR 150 n 164 TYR 150 X VAL 151 n 165 VAL 151 X PRO 152 n 166 PRO 152 X ARG 153 n 167 ARG 153 X ASP 154 n 168 ASP 154 X ASN 155 n 169 ASN 155 X ALA 156 n 170 ALA 156 X ASN 157 n 171 ASN 157 X ASP 158 n 172 ASP 158 X VAL 159 n 173 VAL 159 X ASP 160 n 174 ASP 160 X LYS 161 n 175 LYS 161 X TYR 162 n 176 TYR 162 X LYS 163 n 177 LYS 163 X HIS 164 n 178 HIS 164 X THR 165 n 179 THR 165 X LYS 166 n 180 LYS 166 X SER 167 n 181 SER 167 X SER 168 n 182 SER 168 X ARG 169 n 183 ARG 169 X GLU 170 n 184 GLU 170 X SER 171 n 185 SER 171 X TYR 172 n 186 TYR 172 X HIS 173 n 187 HIS 173 X ALA 174 n 188 ALA 174 X GLY 175 n 189 GLY 175 X LEU 176 n 190 LEU 176 X LYS 177 n 191 LYS 177 X TYR 178 n 192 TYR 178 X GLU 179 n 193 GLU 179 X ASN 180 n 194 ASN 180 X ALA 181 n 195 ALA 181 X GLY 182 n 196 GLY 182 X PHE 183 n 197 PHE 183 X PHE 184 n 198 PHE 184 X GLY 185 n 199 GLY 185 X GLN 186 n 200 GLN 186 X TYR 187 n 201 TYR 187 X ALA 188 n 202 ALA 188 X GLY 189 n 203 GLY 189 X SER 190 n 204 SER 190 X PHE 191 n 205 PHE 191 X ALA 192 n 206 ALA 192 X LYS 193 n 207 LYS 193 X TYR 194 n 208 TYR 194 X ALA 195 n 209 ALA 195 X ASP 196 n 210 ASP 196 X LEU 197 n 211 LEU 197 X ASN 198 n 212 ASN 198 X THR 199 n 213 THR 199 X ASP 200 n 214 ASP 200 X ALA 201 n 215 ALA 201 X GLU 202 n 216 GLU 202 X ARG 203 n 217 ARG 203 X VAL 204 n 218 VAL 204 X ALA 205 n 219 ALA 205 X VAL 206 n 220 VAL 206 X ASN 207 n 221 ASN 207 X THR 208 n 222 THR 208 X ALA 209 n 223 ALA 209 X ASN 210 n 224 ASN 210 X ALA 211 n 225 ALA 211 X HIS 212 n 226 HIS 212 X PRO 213 n 227 PRO 213 X VAL 214 n 228 VAL 214 X LYS 215 n 229 LYS 215 X ASP 216 n 230 ASP 216 X TYR 217 n 231 TYR 217 X GLN 218 n 232 GLN 218 X VAL 219 n 233 VAL 219 X HIS 220 n 234 HIS 220 X ARG 221 n 235 ARG 221 X VAL 222 n 236 VAL 222 X VAL 223 n 237 VAL 223 X ALA 224 n 238 ALA 224 X GLY 225 n 239 GLY 225 X TYR 226 n 240 TYR 226 X ASP 227 n 241 ASP 227 X ALA 228 n 242 ALA 228 X ASN 229 n 243 ASN 229 X ASP 230 n 244 ASP 230 X LEU 231 n 245 LEU 231 X TYR 232 n 246 TYR 232 X VAL 233 n 247 VAL 233 X SER 234 n 248 SER 234 X VAL 235 n 249 VAL 235 X ALA 236 n 250 ALA 236 X GLY 237 n 251 GLY 237 X GLN 238 n 252 GLN 238 X TYR 239 n 253 TYR 239 X GLU 240 n 254 GLU 240 X ALA 241 n 255 ALA 241 X ALA 242 n 256 ALA 242 X LYS 243 n 257 LYS 243 X ASN 244 n 258 ASN 244 X ASN 245 n 259 ASN 245 X GLU 246 n 260 GLU 246 X VAL 247 n 261 VAL 247 X GLY 248 n 262 GLY 248 X SER 249 n 263 SER 249 X ILE 250 n 264 ILE 250 X LYS 251 n 265 LYS 251 X GLY 252 n 266 GLY 252 X LYS 253 n 267 LYS 253 X LYS 254 n 268 LYS 254 X HIS 255 n 269 HIS 255 X GLU 256 n 270 GLU 256 X GLN 257 n 271 GLN 257 X THR 258 n 272 THR 258 X GLN 259 n 273 GLN 259 X VAL 260 n 274 VAL 260 X ALA 261 n 275 ALA 261 X ALA 262 n 276 ALA 262 X THR 263 n 277 THR 263 X ALA 264 n 278 ALA 264 X ALA 265 n 279 ALA 265 X TYR 266 n 280 TYR 266 X ARG 267 n 281 ARG 267 X PHE 268 n 282 PHE 268 X GLY 269 n 283 GLY 269 X ASN 270 n 284 ASN 270 X VAL 271 n 285 VAL 271 X THR 272 n 286 THR 272 X PRO 273 n 287 PRO 273 X ARG 274 n 288 ARG 274 X VAL 275 n 289 VAL 275 X SER 276 n 290 SER 276 X TYR 277 n 291 TYR 277 X ALA 278 n 292 ALA 278 X HIS 279 n 293 HIS 279 X GLY 280 n 294 GLY 280 X PHE 281 n 295 PHE 281 X LYS 282 n 296 LYS 282 X ALA 283 n 297 ALA 283 X LYS 284 n 298 LYS 284 X VAL 285 n 299 VAL 285 X ASN 286 n 300 ASN 286 X GLY 287 n 301 GLY 287 X VAL 288 n 302 VAL 288 X LYS 289 n 303 LYS 289 X ASP 290 n 304 ASP 290 X ALA 291 n 305 ALA 291 X ASN 292 n 306 ASN 292 X TYR 293 n 307 TYR 293 X GLN 294 n 308 GLN 294 X TYR 295 n 309 TYR 295 X ASP 296 n 310 ASP 296 X GLN 297 n 311 GLN 297 X VAL 298 n 312 VAL 298 X ILE 299 n 313 ILE 299 X VAL 300 n 314 VAL 300 X GLY 301 n 315 GLY 301 X ALA 302 n 316 ALA 302 X ASP 303 n 317 ASP 303 X TYR 304 n 318 TYR 304 X ASP 305 n 319 ASP 305 X PHE 306 n 320 PHE 306 X SER 307 n 321 SER 307 X LYS 308 n 322 LYS 308 X ARG 309 n 323 ARG 309 X THR 310 n 324 THR 310 X SER 311 n 325 SER 311 X ALA 312 n 326 ALA 312 X LEU 313 n 327 LEU 313 X VAL 314 n 328 VAL 314 X SER 315 n 329 SER 315 X ALA 316 n 330 ALA 316 X GLY 317 n 331 GLY 317 X TRP 318 n 332 TRP 318 X LEU 319 n 333 LEU 319 X LYS 320 n 334 LYS 320 X GLN 321 n 335 GLN 321 X GLY 322 n 336 GLY 322 X LYS 323 n 337 LYS 323 X GLY 324 n 338 GLY 324 X ALA 325 n 339 ALA 325 X GLY 326 n 340 GLY 326 X LYS 327 n 341 LYS 327 X VAL 328 n 342 VAL 328 X GLU 329 n 343 GLU 329 X GLN 330 n 344 GLN 330 X THR 331 n 345 THR 331 X ALA 332 n 346 ALA 332 X SER 333 n 347 SER 333 X MET 334 n 348 MET 334 X VAL 335 n 349 VAL 335 X GLY 336 n 350 GLY 336 X LEU 337 n 351 LEU 337 X ARG 338 n 352 ARG 338 X HIS 339 n 353 HIS 339 X LYS 340 n 354 LYS 340 X PHE 341 n 355 PHE 341 X author_defined_assembly 1 monomeric software_defined_assembly PISA 3 trimeric 11320 -409 40790 X TRP 109 A O TRP 123 1_555 X CS 403 D CS CS 1_555 X GLU 110 A OE1 GLU 124 1_555 76.5 X GLY 125 A O GLY 139 1_555 X CS 401 B CS CS 1_555 X GLU 128 A O GLU 142 1_555 72.3 X ARG 130 A O ARG 144 1_555 X CS 402 C CS CS 1_555 X GLU 131 A OE2 GLU 145 1_555 71.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 X O ALA 37 A O ALA 51 X N GLY 11 A N GLY 25 X N GLY 6 A N GLY 20 X O PHE 341 A O PHE 355 X O ALA 332 A O ALA 346 X N GLY 317 A N GLY 331 X O LYS 320 A O LYS 334 X N ASP 296 A N ASP 310 X O GLY 301 A O GLY 315 X N ARG 274 A N ARG 288 X O TYR 277 A O TYR 291 X N ALA 262 A N ALA 276 X O ALA 265 A O ALA 279 X N TYR 232 A N TYR 246 X O LYS 243 A O LYS 257 X N LYS 215 A N LYS 229 X O HIS 212 A O HIS 226 X N LEU 197 A N LEU 211 X O GLY 185 A O GLY 199 X N TYR 178 A N TYR 192 X O HIS 173 A O HIS 187 X N GLN 149 A N GLN 163 X O TYR 150 A O TYR 164 X N VAL 134 A N VAL 148 X O ARG 135 A O ARG 149 X N ARG 91 A N ARG 105 X O GLY 88 A O GLY 102 X N GLY 85 A N GLY 99 X O LYS 84 A O LYS 98 X N LYS 56 A N LYS 70 X O LEU 61 A O LEU 75 X N PHE 45 A N PHE 59 X O GLY 44 A O GLY 58 X N TYR 5 A N TYR 19 X N ALA 283 A N ALA 297 X O ASP 290 A O ASP 304 1 X HOH 501 F HOH 1 X MET -13 A MET 1 1 Y 1 X ALA -12 A ALA 2 1 Y 1 X SER -11 A SER 3 1 Y 1 X MET -10 A MET 4 1 Y 1 X THR -9 A THR 5 1 Y 1 X GLY -8 A GLY 6 1 Y 1 X GLY -7 A GLY 7 1 Y 1 X GLN -6 A GLN 8 1 Y 1 X GLN -5 A GLN 9 1 Y 1 X MET -4 A MET 10 1 Y 1 X GLY -3 A GLY 11 1 Y 1 X ARG -2 A ARG 12 1 Y 1 X ASP -1 A ASP 13 1 Y 1 X LEU 0 A LEU 14 1 Y 1 X X ND2 OE1 ASN GLU 198 202 1.94 1 X X ND2 CG2 ASN ILE 244 250 1.99 1 X X OH OE2 TYR GLU 239 256 2.12 1 X X CG2 OD1 ILE ASN 250 286 2.18 1 X X NE O ARG HOH 153 509 2.18 1 X X NE2 O GLN TYR 257 293 2.19 1 17.56 2.00 110.40 127.96 X X X CB CA C LYS LYS LYS 323 323 323 N 1 15.67 1.80 110.60 126.27 X X X N CA CB LYS LYS LYS 327 327 327 N 1 X X CB OG SER SER 30 30 0.079 0.013 1.418 1.497 N 1 X X CG CD2 HIS HIS 164 164 0.059 0.009 1.354 1.413 N 1 X X CE2 CD2 TRP TRP 318 318 0.073 0.012 1.409 1.482 N 1 X X OE1 OG1 GLU THR 49 310 2.07 1_555 2_555 1 X X CD1 CD2 ILE LEU 81 337 2.13 1_555 2_555 1 X X OE2 CD GLU ARG 49 309 2.16 1_555 2_555 1 X GLN 26 -37.67 118.52 1 X ASN 207 83.74 -1.19 1 X ASN 210 79.37 -8.75 1 X LYS 251 -38.04 131.03 51.341 0.05 0.03 0.00 0.05 -0.00 -0.08 0.914 0.845 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT 0.28067 0.23538 0.23988 0.23988 2.63 50 1192 10770 10.0 93.74 RANDOM 1 THROUGHOUT 10.3 MOLECULAR REPLACEMENT 1.832 0.385 0.80 0.80 1.20 3A2R MAXIMUM LIKELIHOOD MASK 2.63 50 12 2609 4 0 2593 0.017 0.019 2642 1.908 1.922 3562 7.692 5.000 340 35.307 24.444 126 24.153 15.000 431 22.638 15.000 14 0.101 0.200 374 0.008 0.020 2047 0.342 0.342 2.700 70 599 20 71.32 2.63 81.00 3VY9 11968 10.3 1.86 1 94.3 2.63 2.7 1 76.3 data collection HKL-2000 phasing PHASES refinement REFMAC 5.6.0117 data reduction HKL-2000 data scaling HKL-2000 Crystal structure of PorB from Neisseria meningitidis in complex with cesium ion, space group H32 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N X ALA 25 A ALA 39 HELX_P X LYS 29 A LYS 43 5 1 5 X THR 97 A THR 111 HELX_P X GLY 103 A GLY 117 1 2 7 X ASP 104 A ASP 118 HELX_P X VAL 106 A VAL 120 5 3 3 X GLY 112 A GLY 126 HELX_P X GLU 116 A GLU 130 5 4 5 X THR 123 A THR 137 HELX_P X GLU 128 A GLU 142 5 5 6 X PRO 152 A PRO 166 HELX_P X ASN 157 A ASN 171 1 6 6 X ASP 158 A ASP 172 HELX_P X LYS 161 A LYS 175 5 7 4 X ALA 291 A ALA 305 HELX_P X TYR 293 A TYR 307 5 8 3 metalc 2.779 X TRP 109 A O TRP 123 1_555 X CS 403 D CS CS 1_555 metalc 3.289 X GLU 110 A OE1 GLU 124 1_555 X CS 403 D CS CS 1_555 metalc 3.113 X GLY 125 A O GLY 139 1_555 X CS 401 B CS CS 1_555 metalc 3.170 X GLU 128 A O GLU 142 1_555 X CS 401 B CS CS 1_555 metalc 2.798 X ARG 130 A O ARG 144 1_555 X CS 402 C CS CS 1_555 metalc 2.537 X GLU 131 A OE2 GLU 145 1_555 X CS 402 C CS CS 1_555 MEMBRANE PROTEIN Beta-barrel, porin, channel, outer membrane protein, MEMBRANE PROTEIN 3VY9 PDB 1 3VY9 -13 341 3VY9 -13 341 3VY9 X 1 1 355 18 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel X ALA 33 A ALA 47 X ASP 38 A ASP 52 X VAL 2 A VAL 16 X ASP 19 A ASP 33 X LYS 327 A LYS 341 X PHE 341 A PHE 355 X THR 310 A THR 324 X GLY 322 A GLY 336 X TYR 295 A TYR 309 X ASP 305 A ASP 319 X VAL 271 A VAL 285 X GLY 280 A GLY 294 X LYS 254 A LYS 268 X TYR 266 A TYR 280 X LEU 231 A LEU 245 X ASN 244 A ASN 258 X HIS 212 A HIS 226 X ALA 228 A ALA 242 X PHE 183 A PHE 197 X LEU 197 A LEU 211 X SER 171 A SER 185 X ASN 180 A ASN 194 X PHE 144 A PHE 158 X VAL 151 A VAL 165 X ARG 130 A ARG 144 X ASP 137 A ASP 151 X GLY 88 A GLY 102 X ASN 96 A ASN 110 X ARG 77 A ARG 91 X GLY 85 A GLY 99 X LYS 56 A LYS 70 X LYS 64 A LYS 78 X LYS 42 A LYS 56 X ASP 50 A ASP 64 X VAL 2 A VAL 16 X ASP 19 A ASP 33 X ALA 283 A ALA 297 X VAL 285 A VAL 299 X VAL 288 A VAL 302 X ASP 290 A ASP 304 BINDING SITE FOR RESIDUE CS X 401 X CS 401 Software 2 BINDING SITE FOR RESIDUE CS X 402 X CS 402 Software 2 BINDING SITE FOR RESIDUE CS X 403 X CS 403 Software 2 BINDING SITE FOR RESIDUE CS X 404 X CS 404 Software 1 X GLY 125 A GLY 139 2 1_555 X GLU 128 A GLU 142 2 1_555 X ARG 130 A ARG 144 2 1_555 X GLU 131 A GLU 145 2 1_555 X TRP 109 A TRP 123 2 1_555 X GLU 110 A GLU 124 2 1_555 X ASN 114 A ASN 128 1 1_555 155 H 3 2